RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2575
         (165 letters)



>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein
           PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 274

 Score = 87.7 bits (217), Expect = 3e-22
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 45  ACEHIHSNEIILTLGYSKIVELFLKNAA-QHRKFQCIVMENSPENKGHELAVSLAKSKIQ 103
             + I   ++I+T  +S  V   ++ A  + ++F+ I+ E+SP+ +G  LA  L  S I+
Sbjct: 102 GAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE 161

Query: 104 TVLIPDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPYPC 157
             +I D+ M       +  I+G   +  +G + +  GT+ +ALA    +IP+  
Sbjct: 162 FEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYV 215


>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
           [TaxId: 5664]}
          Length = 374

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 47  EHIHSNEIILTLGYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAV-SLAKSKIQTV 105
             I +   + T  Y   + +  +     +  +    E  P N+G  L V    +  I   
Sbjct: 173 LTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCT 232

Query: 106 LIPDSAMFGLIS--RVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHYSIPY 155
           LI D A   L+   +++ +++G   +  NG   +  GT+ +A++A+ + +  
Sbjct: 233 LICDGAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKL 284


>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
           isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
          Length = 340

 Score = 52.0 bits (124), Expect = 4e-09
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 44  QACEHIHSNEIILTLGYSKIV---------ELFLKNAAQHRKFQCIVMENSPENKGHELA 94
              + I     ILT   +  +          +        ++ +    E  P  +G  L 
Sbjct: 137 NGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLT 196

Query: 95  VS-LAKSKIQTVLIPDSAM--FGLISRVNKIIIGTHTVMANGGLRSVCGTHAVALAAQHY 151
              L K  I+  +I D+          ++ +++G   +  NG   +  GT+++A+ A+  
Sbjct: 197 AWELMKDGIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRN 256

Query: 152 SIPY 155
           +IP+
Sbjct: 257 NIPF 260


>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima
           [TaxId: 2336]}
          Length = 161

 Score = 26.0 bits (57), Expect = 1.7
 Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 59  GYSKIVELFLKNAAQHRKFQCIVMENSPENKGHELAVSLA-KSKIQTVLIPDSAM-FGLI 116
           G+S+ V    +   +      +V      ++ + LAVS+      Q +++ +      ++
Sbjct: 1   GFSRAVRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIV 60

Query: 117 SRVNKIIIGTHTVM 130
             + +   G  T++
Sbjct: 61  EFLKQNEAGRVTIL 74


>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 105

 Score = 24.3 bits (52), Expect = 4.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 1  MPKEIKSKSQEDDNYQESLHKLVV 24
          M K+I+SK+   +    +  KLVV
Sbjct: 1  MVKQIESKTAFQEALDAAGDKLVV 24


>d2j2ja1 b.21.1.1 (A:361-542) Adenovirus fiber protein "knob" domain
           {Canine adenovirus 2 [TaxId: 10514]}
          Length = 182

 Score = 24.4 bits (53), Expect = 6.6
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 108 PDSAMFGLISRVNKIIIGTHTVMANGGLRSVCGTH 142
           P    F  ++R + ++    + +  GG R V  T 
Sbjct: 21  PVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQ 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 549,283
Number of extensions: 21790
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 9
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)