BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2576
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec
6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351)
From Thermotoga Maritima At 2.5 A Resolution
Length = 481
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 32 YDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELV 73
Y Q+ F F +PE+ YE + L V P DYV ++V
Sbjct: 140 YSQEXFEKFDTPERRREYEEKGLRPAVFFKXPRKDYVLNDVV 181
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 17 VLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEH-RDLVSKVQVFNPEYDYVPPELVSL 75
V APL + C D PE+V R S V VFNP +D P +L+S
Sbjct: 291 VAAPLSTFDTKVKCGADIPIEER--DPEEVRQISGVRTAPSNVPVFNPAFDITPHDLISG 348
Query: 76 FIS 78
I+
Sbjct: 349 IIT 351
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 16 IVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVSL 75
++ A YK P+ + + + PE E + ++V+NP +D PPE V +
Sbjct: 238 MIAAETYKFHPETMLVEIEMRDPTEVIPED----ELKTWPKNIEVWNPAFDVTPPEYVDV 293
Query: 76 FIS 78
I+
Sbjct: 294 IIT 296
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 58 VQVFNPEYDYVPPELVSLFIS 78
++V+NP +D PPE V + I+
Sbjct: 288 IEVWNPAFDVTPPEYVDVIIT 308
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 58 VQVFNPEYDYVPPELVSLFIS 78
++V+NP +D PPE V + I+
Sbjct: 273 IEVWNPAFDVTPPEYVDVIIT 293
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 58 VQVFNPEYDYVPPELVSLFIS 78
++V+NP +D PPE V + I+
Sbjct: 272 IEVWNPAFDVTPPEYVDVIIT 292
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 58 VQVFNPEYDYVPPELVSLFIS 78
++V+NP +D PPE V + I+
Sbjct: 271 IEVWNPAFDVTPPEYVDVIIT 291
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 58 VQVFNPEYDYVPPELVSLFIS 78
++V+NP +D PPE V + I+
Sbjct: 288 IEVWNPAFDVTPPEYVDVIIT 308
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli
pdb|2FSG|B Chain B, Complex Seca:atp From Escherichia Coli
Length = 853
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 32 YDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPE 64
Y +++F+ F + + L YE +SKVQV PE
Sbjct: 795 YKRESFSXFAAXLESLKYEVISTLSKVQVRXPE 827
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex
Length = 828
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 32 YDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPE 64
Y +++F+ F + + L YE +SKVQV PE
Sbjct: 795 YKRESFSMFAAMLESLKYEVISTLSKVQVRMPE 827
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSF|B Chain B, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSH|A Chain A, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSH|B Chain B, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSI|A Chain A, Complex Seca:adp From Escherichia Coli
pdb|2FSI|B Chain B, Complex Seca:adp From Escherichia Coli
Length = 853
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 32 YDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPE 64
Y +++F+ F + + L YE +SKVQV PE
Sbjct: 795 YKRESFSMFAAMLESLKYEVISTLSKVQVRMPE 827
>pdb|2AXV|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AXV|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AXV|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AXV|D Chain D, Structure Of Prgx Y153c Mutant
Length = 317
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 27 QFLCSYDQDTF---NNFISPEKVLSYE--HRDLVSKVQVFNPEYDYVPPELVSLFISN 79
QFL + D++ N I+ K++ E HR LV ++ + + + PP+ V+++ N
Sbjct: 244 QFLTDKNIDSYLNAVNIINIFKIIGKEDIHRSLVEELTKISAKEKFTPPKEVTMYYEN 301
>pdb|2GRM|A Chain A, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|B Chain B, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|C Chain C, Crystal Structure Of PrgxICF10 COMPLEX
Length = 317
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 27 QFLCSYDQDTF---NNFISPEKVLSYE--HRDLVSKVQVFNPEYDYVPPELVSLFISN 79
QFL + D++ N I+ K++ E HR LV ++ + + + PP+ V+++ N
Sbjct: 244 QFLTDKNIDSYLNAVNIINIFKIIGKEDIHRSLVEELTKISAKEKFTPPKEVTMYYEN 301
>pdb|2AW6|A Chain A, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2AW6|B Chain B, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2GRL|A Chain A, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|B Chain B, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|C Chain C, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|D Chain D, Crystal Structure Of DctICF10 COMPLEX
Length = 317
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 27 QFLCSYDQDTF---NNFISPEKVLSYE--HRDLVSKVQVFNPEYDYVPPELVSLFISN 79
QFL + D++ N I+ K++ E HR LV ++ + + + PP+ V+++ N
Sbjct: 244 QFLTDKNIDSYLNAVNIINIFKIIGKEDIHRSLVEELTKISAKEKFTPPKEVTMYYEN 301
>pdb|2AWI|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AWI|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AWI|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AWI|D Chain D, Structure Of Prgx Y153c Mutant
pdb|2AWI|E Chain E, Structure Of Prgx Y153c Mutant
pdb|2AWI|F Chain F, Structure Of Prgx Y153c Mutant
pdb|2AWI|G Chain G, Structure Of Prgx Y153c Mutant
pdb|2AWI|H Chain H, Structure Of Prgx Y153c Mutant
pdb|2AWI|I Chain I, Structure Of Prgx Y153c Mutant
pdb|2AWI|J Chain J, Structure Of Prgx Y153c Mutant
pdb|2AWI|K Chain K, Structure Of Prgx Y153c Mutant
pdb|2AWI|L Chain L, Structure Of Prgx Y153c Mutant
Length = 317
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 27 QFLCSYDQDTF---NNFISPEKVLSYE--HRDLVSKVQVFNPEYDYVPPELVSLFISN 79
QFL + D++ N I+ K++ E HR LV ++ + + + PP+ V+++ N
Sbjct: 244 QFLTDKNIDSYLNAVNIINIFKIIGKEDIHRSLVEELTKISAKEKFTPPKEVTMYYEN 301
>pdb|2AXU|A Chain A, Structure Of Prgx
pdb|2AXU|B Chain B, Structure Of Prgx
pdb|2AXU|C Chain C, Structure Of Prgx
pdb|2AXU|D Chain D, Structure Of Prgx
pdb|2AXU|E Chain E, Structure Of Prgx
pdb|2AXU|F Chain F, Structure Of Prgx
pdb|2AXU|G Chain G, Structure Of Prgx
pdb|2AXU|H Chain H, Structure Of Prgx
pdb|2AXU|I Chain I, Structure Of Prgx
pdb|2AXU|J Chain J, Structure Of Prgx
pdb|2AXU|K Chain K, Structure Of Prgx
pdb|2AXU|L Chain L, Structure Of Prgx
Length = 317
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 27 QFLCSYDQDTF---NNFISPEKVLSYE--HRDLVSKVQVFNPEYDYVPPELVSLFISN 79
QFL + D++ N I+ K++ E HR LV ++ + + + PP+ V+++ N
Sbjct: 244 QFLTDKNIDSYLNAVNIINIFKIIGKEDIHRSLVEELTKISAKEKFTPPKEVTMYYEN 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,465,234
Number of Sequences: 62578
Number of extensions: 85871
Number of successful extensions: 139
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 18
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)