BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2576
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q90511|EI2BB_TAKRU Translation initiation factor eIF-2B subunit beta OS=Takifugu
rubripes GN=eif2b2 PE=3 SV=1
Length = 355
Score = 79.3 bits (194), Expect = 7e-15, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVS 74
+IV AP++KLSPQF ++DTF+ F+SP +VL + +++SKV V P +DYVPPEL++
Sbjct: 269 LIVCAPMFKLSPQF--PNEEDTFHKFVSPHEVLPFTEGEILSKVNVHCPVFDYVPPELIT 326
Query: 75 LFISN 79
LFISN
Sbjct: 327 LFISN 331
>sp|P49770|EI2BB_HUMAN Translation initiation factor eIF-2B subunit beta OS=Homo sapiens
GN=EIF2B2 PE=1 SV=3
Length = 351
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVS 74
+IV AP++KLSPQF ++D+F+ F++PE+VL + D++ KV V P +DYVPPEL++
Sbjct: 265 LIVCAPMFKLSPQF--PNEEDSFHKFVAPEEVLPFTEGDILEKVSVHCPVFDYVPPELIT 322
Query: 75 LFISN 79
LFISN
Sbjct: 323 LFISN 327
>sp|Q5E9B4|EI2BB_BOVIN Translation initiation factor eIF-2B subunit beta OS=Bos taurus
GN=EIF2B2 PE=2 SV=1
Length = 351
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVS 74
+IV AP++KLSPQF ++D+F+ F++PE+VL + D++ KV V P +DYVPPEL++
Sbjct: 265 LIVCAPMFKLSPQF--PNEEDSFHKFVAPEEVLPFTEGDILEKVSVHCPVFDYVPPELIT 322
Query: 75 LFISN 79
LFISN
Sbjct: 323 LFISN 327
>sp|Q62818|EI2BB_RAT Translation initiation factor eIF-2B subunit beta OS=Rattus
norvegicus GN=Eif2b2 PE=2 SV=1
Length = 351
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVS 74
+IV AP++KLSPQF ++D+F+ F++PE+VL + D++ KV V P +DYVPP+L++
Sbjct: 265 LIVCAPMFKLSPQF--PSEEDSFHKFVAPEEVLPFTEGDILEKVSVHCPVFDYVPPDLIT 322
Query: 75 LFISN 79
LFISN
Sbjct: 323 LFISN 327
>sp|Q99LD9|EI2BB_MOUSE Translation initiation factor eIF-2B subunit beta OS=Mus musculus
GN=Eif2b2 PE=2 SV=1
Length = 351
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVS 74
+IV AP++KLSPQF ++D+F+ F++PE+VL + D++ KV V P +DYVPP+L++
Sbjct: 265 LIVCAPMFKLSPQF--PSEEDSFHKFVAPEEVLPFTEGDILEKVSVHCPVFDYVPPDLIT 322
Query: 75 LFISN 79
LFISN
Sbjct: 323 LFISN 327
>sp|Q28690|EI2BB_RABIT Translation initiation factor eIF-2B subunit beta OS=Oryctolagus
cuniculus GN=EIF2B2 PE=1 SV=1
Length = 351
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 49/65 (75%), Gaps = 2/65 (3%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVS 74
+IV AP++KLSPQF ++D+F+ F++PE+VL + D++ KV P +DYVPPEL++
Sbjct: 265 LIVCAPMFKLSPQF--PNEEDSFHKFVAPEEVLPFTEGDILDKVGCHCPVFDYVPPELIT 322
Query: 75 LFISN 79
LFISN
Sbjct: 323 LFISN 327
>sp|Q54EY2|EI2BB_DICDI Translation initiation factor eIF-2B subunit beta OS=Dictyostelium
discoideum GN=eif2b2 PE=3 SV=1
Length = 388
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVS 74
++V LYKL P L +YDQDTFNNF SP + L +E + + V +NP +DYV P+LVS
Sbjct: 300 IVVCTGLYKLCP--LYAYDQDTFNNFGSPGEYLKFEEAEFLENVHSYNPTFDYVAPDLVS 357
Query: 75 LFISN 79
LFI+N
Sbjct: 358 LFITN 362
>sp|Q9UT76|EI2BB_SCHPO Probable translation initiation factor eIF-2B subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif222 PE=1 SV=1
Length = 393
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVS 74
V+V + +YKLSP + YD ++ SP+K++S+ DL+S+ ++ NP YDY+PP+LV
Sbjct: 307 VVVCSGIYKLSPVY--PYDLESIIQLSSPDKIMSFNEGDLISRAEILNPYYDYIPPDLVD 364
Query: 75 LFISN 79
LFI+N
Sbjct: 365 LFITN 369
>sp|P32502|EI2BB_YEAST Translation initiation factor eIF-2B subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GCD7 PE=1
SV=1
Length = 381
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 10 SPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVP 69
+PV+ V A LYKLSP L +D + F F +++L D ++ N DYVP
Sbjct: 290 TPVFAV---AGLYKLSP--LYPFDVEKFVEFGGSQRILP--RMDPRKRLDTVNQITDYVP 342
Query: 70 PELVSLFISN 79
PE + ++I+N
Sbjct: 343 PENIDIYITN 352
>sp|P26538|VL2_HPV58 Minor capsid protein L2 OS=Human papillomavirus type 58 GN=L2 PE=3
SV=1
Length = 472
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 14 QVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDL 54
QV V+ P + SP L +YD F F +PE L ++H D+
Sbjct: 234 QVKVVDPAFLTSPHRLVTYDNPAFEGF-NPEDTLQFQHSDI 273
>sp|Q9YE84|MTNA_AERPE Putative methylthioribose-1-phosphate isomerase OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=APE_0686 PE=3 SV=1
Length = 370
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 52 RDLVSKVQVFNPEYDYVPPELVSLFISN 79
R + V+ +NP +D PPEL++ FI++
Sbjct: 325 RITLGDVEAYNPSFDVTPPELITAFITD 352
>sp|P06418|VL2_HPV33 Minor capsid protein L2 OS=Human papillomavirus type 33 GN=L2 PE=3
SV=1
Length = 467
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 14 QVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDL 54
QV V+ P + SP L +YD F +F PE L ++H D+
Sbjct: 234 QVKVVDPAFLTSPHKLITYDNPAFESF-DPEDTLQFQHSDI 273
>sp|Q9KR70|Y1773_VIBCH Kelch domain-containing protein VC_1773 OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_1773
PE=4 SV=1
Length = 356
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 29/78 (37%)
Query: 4 LGSNLCSPVYQVIVLAPLYKLSPQ---FLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQV 60
LG++ CS LSP F YD+DTFNNF+S +SK+ V
Sbjct: 116 LGASCCS-------------LSPTEIIFFGGYDKDTFNNFLSE-----------ISKIDV 151
Query: 61 FNPEYDYVPPELVSLFIS 78
Y EL+++F+S
Sbjct: 152 TKEPNKY--KELITIFMS 167
>sp|Q8U4G6|EI2B2_PYRFU Putative translation initiation factor eIF-2B subunit 2
OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=PF0122 PE=3 SV=2
Length = 324
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSK-VQVFNPEYDYVPPELV 73
V++ A YK P+ + Q P +V+ E + K ++V NP +D PPE +
Sbjct: 232 VMIAAETYKFHPETMLG--QLVEIEMRDPTEVVPKEELETWPKNIEVLNPAFDVTPPEYI 289
Query: 74 SLFIS 78
+ I+
Sbjct: 290 DVIIT 294
>sp|O57947|EI2B2_PYRHO Putative translation initiation factor eIF-2B subunit 2
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=PH0208 PE=3 SV=1
Length = 324
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEH-RDLVSKVQVFNPEYDYVPPELV 73
V++ A YK P + Q P +V+ E R ++V+NP +D PPE +
Sbjct: 232 VMIAAETYKFHPATMLG--QLVEIEMRDPTEVIPEEELRTWPKNIEVWNPAFDVTPPEYI 289
Query: 74 SLFIS 78
+ I+
Sbjct: 290 DVIIT 294
>sp|Q4JB92|MTNA_SULAC Putative methylthioribose-1-phosphate isomerase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_0539 PE=3 SV=1
Length = 367
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 20 PLYKLSPQ----FLCSYDQDTFNNFISPEKVLSYEHRDLVSK-VQVFNPEYDYVPPELVS 74
P Y L+P + + DQ SP++V S + + K V+V+NP +D PP+ VS
Sbjct: 286 PFYALAPSSTFDMISTVDQVKIEER-SPDEVRSIKGVYISPKEVKVYNPVFDVTPPKYVS 344
Query: 75 LFIS 78
I+
Sbjct: 345 AIIT 348
>sp|Q9V281|EI2B2_PYRAB Putative translation initiation factor eIF-2B subunit 2
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=aIF-2BII
PE=3 SV=1
Length = 324
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 15 VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSK-VQVFNPEYDYVPPELV 73
V++ A YK P+ + Q P +V+ E K ++V+NP +D PPE +
Sbjct: 232 VMIAAETYKFHPETMLG--QLVEIEMRDPTEVIPEEELKTWPKNIEVWNPAFDVTPPEYI 289
Query: 74 SLFIS 78
+ I+
Sbjct: 290 DVIIT 294
>sp|B1J5G5|MTNA_PSEPW Methylthioribose-1-phosphate isomerase OS=Pseudomonas putida
(strain W619) GN=mtnA PE=3 SV=1
Length = 358
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 44 EKVLSYEHRDLVSKVQVFNPEYDYVPPELVSLFIS 78
+++L Y + +V+VFNP +D P +L+ + ++
Sbjct: 301 DELLDYAGTRVAPQVEVFNPVFDVTPADLIDVIVT 335
>sp|B1LBX4|SYE2_THESQ Glutamate--tRNA ligase 2 OS=Thermotoga sp. (strain RQ2) GN=gltX2
PE=3 SV=1
Length = 469
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 32 YDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELV 73
Y Q+ F F +PE+ YE + L V P DYV ++V
Sbjct: 128 YSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVV 169
>sp|A5IMM2|SYE2_THEP1 Glutamate--tRNA ligase 2 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=gltX2 PE=3 SV=1
Length = 469
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 32 YDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELV 73
Y Q+ F F +PE+ YE + L V P DYV ++V
Sbjct: 128 YSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVV 169
>sp|Q9X172|SYE1_THEMA Glutamate--tRNA ligase 1 OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=gltX1 PE=1 SV=1
Length = 469
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 32 YDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELV 73
Y Q+ F F +PE+ YE + L V P DYV ++V
Sbjct: 128 YSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVV 169
>sp|Q9CQT1|MTNA_MOUSE Methylthioribose-1-phosphate isomerase OS=Mus musculus GN=Mri1 PE=2
SV=1
Length = 369
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 13 YQVIVLA-----PLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDL------VSKVQVF 61
YQ+ ++A P Y +P C +T + E+ S E DL ++V+
Sbjct: 263 YQLAIVAKHHGVPFYVAAPSSSCDLHLETGKEIVIEERP-SQELTDLNGVRIAAQGIRVW 321
Query: 62 NPEYDYVPPELVS 74
NP +D P EL++
Sbjct: 322 NPAFDVTPHELIT 334
>sp|Q4FZP2|MTNA_XENLA Methylthioribose-1-phosphate isomerase OS=Xenopus laevis GN=mri1
PE=2 SV=1
Length = 354
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 13 YQVIVLA-----PLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDL------VSKVQVF 61
YQ+ ++A P Y +P C T + + E+ S+E D+ + V+
Sbjct: 261 YQLAIIAKYHGIPFYVAAPSTSCDLSLPTGGSIVIEERP-SHELTDINGIRIAAPGIDVW 319
Query: 62 NPEYDYVPPELVSLFIS 78
NP +D P EL++ I+
Sbjct: 320 NPAFDVTPHELITGIIT 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,812,676
Number of Sequences: 539616
Number of extensions: 1083685
Number of successful extensions: 2216
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2197
Number of HSP's gapped (non-prelim): 24
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)