Query psy2576
Match_columns 80
No_of_seqs 117 out of 1010
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 19:42:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1465|consensus 99.9 5.1E-27 1.1E-31 169.1 4.1 75 4-80 256-330 (353)
2 TIGR00511 ribulose_e2b2 ribose 99.9 4.7E-25 1E-29 158.6 3.1 76 3-80 208-283 (301)
3 PRK08535 translation initiatio 99.9 9.5E-25 2.1E-29 157.4 3.3 76 3-80 213-288 (310)
4 PRK05720 mtnA methylthioribose 99.9 3.8E-24 8.3E-29 156.5 3.4 76 3-80 250-326 (344)
5 TIGR00524 eIF-2B_rel eIF-2B al 99.9 5.1E-24 1.1E-28 153.5 3.3 76 3-80 222-298 (303)
6 TIGR00512 salvage_mtnA S-methy 99.9 6.7E-24 1.4E-28 154.6 3.5 76 3-80 250-326 (331)
7 PF01008 IF-2B: Initiation fac 99.9 9.2E-24 2E-28 148.8 3.5 76 3-80 201-277 (282)
8 PRK08334 translation initiatio 99.9 1.3E-23 2.7E-28 154.3 3.6 76 3-80 263-338 (356)
9 COG0182 Predicted translation 99.9 3.3E-23 7.1E-28 150.3 3.2 75 4-80 254-329 (346)
10 PRK05772 translation initiatio 99.9 1.1E-22 2.3E-27 149.8 3.1 75 3-80 271-346 (363)
11 PRK06036 translation initiatio 99.9 1.9E-22 4.1E-27 147.4 3.1 75 3-80 250-325 (339)
12 COG1184 GCD2 Translation initi 99.9 1.8E-22 3.9E-27 145.4 2.6 72 4-80 213-284 (301)
13 PRK06371 translation initiatio 99.9 2.7E-22 5.9E-27 146.1 3.2 76 3-80 240-316 (329)
14 PRK08335 translation initiatio 99.8 2.8E-21 6.2E-26 137.9 3.7 65 3-80 202-266 (275)
15 KOG1468|consensus 99.8 2.2E-20 4.7E-25 134.0 0.1 75 4-80 259-337 (354)
16 PRK06372 translation initiatio 99.8 3.2E-19 7E-24 126.2 3.3 68 3-80 176-243 (253)
17 KOG1467|consensus 99.7 1.6E-19 3.4E-24 136.5 -1.2 77 2-80 451-536 (556)
18 KOG1466|consensus 99.7 1.2E-18 2.6E-23 124.1 -0.3 72 4-80 224-296 (313)
19 COG1929 Glycerate kinase [Carb 78.0 1.4 2.9E-05 33.4 1.5 24 3-26 307-330 (378)
20 PF02595 Gly_kinase: Glycerate 75.2 1.6 3.4E-05 32.9 1.2 25 3-27 307-331 (377)
21 PRK09932 glycerate kinase II; 75.1 1.9 4E-05 32.7 1.6 24 3-26 307-330 (381)
22 TIGR00045 glycerate kinase. Th 73.6 2 4.4E-05 32.3 1.5 24 3-26 306-329 (375)
23 PRK10342 glycerate kinase I; P 73.2 2.3 5E-05 32.2 1.7 24 3-26 307-330 (381)
24 PF00391 PEP-utilizers: PEP-ut 66.5 3.1 6.7E-05 24.2 0.9 17 4-20 45-61 (80)
25 cd02417 Peptidase_C39_likeA A 60.4 2.5 5.4E-05 25.4 -0.3 17 1-17 9-25 (121)
26 PRK05634 nucleosidase; Provisi 60.0 5.3 0.00011 26.9 1.2 21 2-22 135-155 (185)
27 PF03412 Peptidase_C39: Peptid 58.4 3.7 8E-05 25.0 0.2 15 1-15 15-29 (131)
28 cd08769 DAP_dppA_2 Peptidase M 55.1 5.8 0.00012 28.7 0.8 24 4-27 139-162 (270)
29 TIGR01704 MTA/SAH-Nsdase 5'-me 53.7 8 0.00017 26.5 1.3 23 2-24 175-197 (228)
30 cd08770 DAP_dppA_3 Peptidase M 53.0 6.5 0.00014 28.4 0.8 23 4-26 139-161 (263)
31 cd08663 DAP_dppA_1 Peptidase M 52.3 6.9 0.00015 28.3 0.9 25 3-27 138-162 (266)
32 KOG3325|consensus 52.1 9.3 0.0002 26.0 1.4 25 2-26 97-121 (183)
33 cd02418 Peptidase_C39B A sub-f 52.0 3.9 8.5E-05 24.9 -0.4 16 1-16 14-29 (136)
34 PRK14697 bifunctional 5'-methy 51.4 9.5 0.00021 26.4 1.4 22 2-23 174-195 (233)
35 cd02421 Peptidase_C39_likeD A 50.8 4 8.7E-05 24.6 -0.5 23 1-23 9-31 (124)
36 cd00281 DAP_dppA Peptidase M55 50.0 7.7 0.00017 28.0 0.8 23 4-26 138-160 (265)
37 PRK07077 hypothetical protein; 49.7 10 0.00023 26.7 1.4 21 2-22 146-166 (238)
38 COG0775 Pfs Nucleoside phospho 49.3 10 0.00022 26.5 1.3 20 2-21 179-198 (234)
39 PRK06026 5'-methylthioadenosin 48.2 11 0.00024 26.2 1.4 18 2-19 151-168 (212)
40 PRK06714 S-adenosylhomocystein 47.3 12 0.00025 26.2 1.3 22 2-23 175-196 (236)
41 PRK07164 5'-methylthioadenosin 46.8 12 0.00026 25.9 1.4 21 2-22 164-184 (218)
42 cd02259 Peptidase_C39_like Pep 46.0 6.2 0.00013 23.4 -0.2 14 2-15 10-23 (122)
43 COG4359 Uncharacterized conser 45.5 13 0.00028 26.1 1.3 17 8-24 85-101 (220)
44 TIGR03468 HpnG hopanoid-associ 44.9 14 0.0003 25.2 1.4 21 2-22 135-155 (212)
45 cd02419 Peptidase_C39C A sub-f 43.7 7.1 0.00015 23.5 -0.2 15 2-16 15-29 (127)
46 PRK06698 bifunctional 5'-methy 43.4 15 0.00032 27.7 1.5 22 2-23 174-195 (459)
47 TIGR03664 fut_nucase futalosin 41.9 15 0.00033 25.1 1.3 24 2-25 174-197 (222)
48 cd02424 Peptidase_C39E A sub-f 41.5 11 0.00023 23.2 0.4 15 2-16 15-30 (129)
49 TIGR01705 MTA/SAH-nuc-hyp 5'-m 40.8 17 0.00038 25.3 1.4 18 2-19 151-168 (212)
50 PRK08236 hypothetical protein; 40.2 17 0.00038 24.9 1.3 19 2-20 164-182 (212)
51 PF03796 DnaB_C: DnaB-like hel 40.1 15 0.00033 25.3 1.0 23 4-26 162-184 (259)
52 PF03841 SelA: L-seryl-tRNA se 39.9 21 0.00045 27.1 1.8 18 4-21 162-179 (367)
53 PRK07004 replicative DNA helic 38.8 20 0.00043 27.4 1.6 21 3-23 355-375 (460)
54 PF04951 Peptidase_M55: D-amin 38.3 8.9 0.00019 27.6 -0.4 25 4-28 139-163 (265)
55 cd02420 Peptidase_C39D A sub-f 37.9 12 0.00025 22.6 0.1 16 2-17 15-30 (125)
56 PF06809 NPDC1: Neural prolife 36.4 29 0.00063 26.0 2.0 14 55-68 312-325 (341)
57 PRK05584 5'-methylthioadenosin 36.3 22 0.00048 24.0 1.4 23 2-24 176-198 (230)
58 PRK08506 replicative DNA helic 35.0 26 0.00056 26.9 1.6 20 4-23 334-353 (472)
59 PRK08006 replicative DNA helic 33.3 34 0.00074 26.4 2.1 21 3-23 367-387 (471)
60 PLN02584 5'-methylthioadenosin 33.2 26 0.00056 24.7 1.3 18 2-19 186-203 (249)
61 cd02423 Peptidase_C39G A sub-f 31.9 15 0.00032 22.1 -0.1 15 2-16 15-30 (129)
62 COG2873 MET17 O-acetylhomoseri 31.3 29 0.00063 26.8 1.4 17 3-19 168-184 (426)
63 PRK05636 replicative DNA helic 31.2 36 0.00077 26.6 1.9 20 4-23 407-426 (505)
64 TIGR03600 phage_DnaB phage rep 31.1 40 0.00087 25.1 2.1 22 4-25 336-357 (421)
65 PRK08760 replicative DNA helic 30.7 37 0.00081 26.1 1.9 20 4-23 371-390 (476)
66 PRK06321 replicative DNA helic 30.6 35 0.00076 26.3 1.8 21 4-24 371-391 (472)
67 PRK06749 replicative DNA helic 30.0 38 0.00082 25.7 1.8 20 4-23 332-351 (428)
68 cd02425 Peptidase_C39F A sub-f 29.9 15 0.00033 21.9 -0.2 16 2-17 15-30 (126)
69 PLN02970 serine racemase 29.9 31 0.00068 25.0 1.3 20 2-21 88-107 (328)
70 PF02639 DUF188: Uncharacteriz 29.9 24 0.00053 22.7 0.7 21 7-27 5-25 (130)
71 PRK05595 replicative DNA helic 29.8 41 0.00089 25.4 2.0 20 4-23 343-362 (444)
72 TIGR00789 flhB_rel flhB C-term 29.7 24 0.00051 21.0 0.6 11 7-17 35-45 (82)
73 TIGR01700 PNPH purine nucleosi 28.8 33 0.00071 24.1 1.2 24 2-25 192-215 (249)
74 PLN02565 cysteine synthase 28.7 34 0.00074 24.8 1.4 21 2-22 80-100 (322)
75 PRK11761 cysM cysteine synthas 28.7 35 0.00076 24.4 1.4 21 2-22 76-96 (296)
76 PRK08840 replicative DNA helic 28.7 42 0.00091 25.8 1.9 21 3-23 360-380 (464)
77 PRK05748 replicative DNA helic 27.5 35 0.00076 25.7 1.3 20 4-23 347-366 (448)
78 PRK08666 5'-methylthioadenosin 27.4 36 0.00078 23.9 1.3 21 2-22 186-206 (261)
79 PF01048 PNP_UDP_1: Phosphoryl 27.0 37 0.00079 22.6 1.2 22 2-23 178-199 (234)
80 PRK10717 cysteine synthase A; 26.3 42 0.0009 24.2 1.4 22 2-23 77-98 (330)
81 TIGR01694 MTAP 5'-deoxy-5'-met 25.8 39 0.00086 23.4 1.2 21 2-22 184-204 (241)
82 PRK06904 replicative DNA helic 25.6 50 0.0011 25.5 1.8 18 4-21 366-383 (472)
83 PRK09136 5'-methylthioadenosin 25.5 38 0.00082 23.9 1.1 24 2-25 186-209 (245)
84 PRK09165 replicative DNA helic 25.4 56 0.0012 25.3 2.0 20 4-23 375-394 (497)
85 TIGR01139 cysK cysteine syntha 25.2 44 0.00096 23.6 1.4 20 3-22 71-90 (298)
86 PRK07476 eutB threonine dehydr 25.2 43 0.00094 24.1 1.4 21 2-22 80-100 (322)
87 KOG1251|consensus 25.0 50 0.0011 24.4 1.6 19 3-21 87-105 (323)
88 COG1406 Predicted inhibitor of 24.6 31 0.00067 23.1 0.5 14 62-75 108-121 (153)
89 cd00640 Trp-synth-beta_II Tryp 24.4 48 0.001 22.5 1.4 22 2-23 63-84 (244)
90 PRK08202 purine nucleoside pho 24.0 44 0.00095 23.8 1.2 23 2-24 214-236 (272)
91 PRK08638 threonine dehydratase 23.9 49 0.0011 24.1 1.4 21 2-22 88-108 (333)
92 PRK13374 purine nucleoside pho 23.8 50 0.0011 22.8 1.4 18 2-19 184-201 (233)
93 PRK07048 serine/threonine dehy 23.8 46 0.001 23.8 1.3 21 2-22 85-105 (321)
94 cd06448 L-Ser-dehyd Serine deh 23.4 51 0.0011 23.8 1.4 20 3-22 65-84 (316)
95 cd01561 CBS_like CBS_like: Thi 23.3 52 0.0011 23.1 1.5 20 3-22 67-86 (291)
96 PRK08813 threonine dehydratase 23.2 51 0.0011 24.5 1.4 21 2-22 94-114 (349)
97 TIGR01138 cysM cysteine syntha 22.9 51 0.0011 23.4 1.3 21 2-22 72-92 (290)
98 COG2362 DppA D-aminopeptidase 22.8 60 0.0013 23.7 1.7 22 5-26 139-160 (274)
99 PRK06110 hypothetical protein; 22.7 51 0.0011 23.7 1.3 21 2-22 83-103 (322)
100 PF07368 DUF1487: Protein of u 22.2 56 0.0012 23.0 1.4 54 9-64 93-148 (215)
101 TIGR01136 cysKM cysteine synth 22.1 55 0.0012 23.1 1.4 21 2-22 71-91 (299)
102 TIGR02991 ectoine_eutB ectoine 22.1 60 0.0013 23.4 1.6 21 2-22 80-100 (317)
103 PRK14045 1-aminocyclopropane-1 22.1 49 0.0011 23.9 1.1 20 2-21 85-104 (329)
104 cd06449 ACCD Aminocyclopropane 22.0 55 0.0012 23.3 1.3 21 2-22 67-87 (307)
105 PLN00011 cysteine synthase 21.8 58 0.0013 23.5 1.5 20 3-22 83-102 (323)
106 PF10450 POC1: POC1 chaperone; 21.5 22 0.00048 25.9 -0.8 16 63-78 182-197 (273)
107 TIGR00260 thrC threonine synth 21.5 69 0.0015 22.8 1.8 24 2-25 84-107 (328)
108 PRK06815 hypothetical protein; 21.4 56 0.0012 23.4 1.3 21 2-22 81-101 (317)
109 TIGR01275 ACC_deam_rel pyridox 21.1 55 0.0012 23.2 1.2 20 2-21 71-90 (311)
110 PRK10646 ADP-binding protein; 21.0 65 0.0014 21.3 1.4 70 7-78 48-127 (153)
111 TIGR01697 PNPH-PUNA-XAPA inosi 20.8 58 0.0013 22.7 1.2 20 2-21 192-211 (248)
112 PHA02542 41 41 helicase; Provi 20.5 46 0.00099 25.8 0.7 20 4-23 336-355 (473)
113 KOG0388|consensus 20.5 40 0.00087 28.5 0.4 23 2-24 605-629 (1185)
114 PRK07409 threonine synthase; V 20.3 69 0.0015 23.4 1.6 23 2-24 91-113 (353)
115 PRK02289 4-oxalocrotonate taut 20.2 71 0.0015 17.2 1.3 12 68-79 34-45 (60)
116 PRK03892 ribonuclease P protei 20.1 53 0.0011 23.2 0.9 31 6-49 160-190 (216)
No 1
>KOG1465|consensus
Probab=99.93 E-value=5.1e-27 Score=169.07 Aligned_cols=75 Identities=48% Similarity=0.842 Sum_probs=70.8
Q ss_pred HhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCccccccccccccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
+|++||+|.+|||||||.||+||.||+ +++.++++|+|+++++|.++...+.++++||.|||+||||||+||||.
T Consensus 256 vAlaAk~h~vPv~VlAp~yKLsPlyp~--~~ds~~~f~s~~~il~~~e~~~~~~~~v~nP~fDyvppeLVtLFIsNt 330 (353)
T KOG1465|consen 256 VALAAKHHSVPVIVLAPMYKLSPLYPT--NPDSFHEFRSPSEILPFSEGDPAGRVDVLNPAFDYVPPELVTLFISNT 330 (353)
T ss_pred HHHHHHhcCCcEEEecchhhcCCCCCC--CHHHHHhcCCcccccCccccCcccceeecccccccCChhheeEEEecC
Confidence 577799999999999999999999999 999999999999999999876568899999999999999999999985
No 2
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=99.90 E-value=4.7e-25 Score=158.56 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=69.8
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCccccccccccccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+||+|||++.++. ++...+|.|+|+|++++.+....++++++||.||||||+|||+||||.
T Consensus 208 ~lA~~Ak~~~vPv~V~a~~~K~~~~~~~--~~~~~ie~~~~~ev~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITe~ 283 (301)
T TIGR00511 208 QLALAAREARVPFMVAAETYKFHPKTIT--GELVEIEERDPTEVLDEEDLKQLGAVKVRNPAFDVTPAEYIDAIITEV 283 (301)
T ss_pred HHHHHHHHhCCCEEEEcccceecCCCCC--CCcccccccCHHHhccccCccCCCCccccCcceecCCHHHCCEEEeCC
Confidence 4789999999999999999999999999 999999999999999876544457899999999999999999999995
No 3
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=99.90 E-value=9.5e-25 Score=157.43 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=69.1
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCccccccccccccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+||+|||++.++. +++..+|+|+|.|+++.......++++++||.||||||+|||+||||.
T Consensus 213 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~--~~~~~ie~~~~~ev~~~~~~~~~~~v~v~np~fD~tP~~lIt~iiTe~ 288 (310)
T PRK08535 213 QIALAAHEARVPFMVAAETYKFSPKTLL--GELVEIEERDPTEVLPEEILAKLPGVKVRNPAFDVTPPEYIDAIITEI 288 (310)
T ss_pred HHHHHHHHhCCCEEEecccceecCCCCC--CCcceecccCHHHhcccccccCCCCceeeccCcccCCHHHCCEEEeCC
Confidence 4789999999999999999999999999 999999999999999874434457899999999999999999999985
No 4
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=99.89 E-value=3.8e-24 Score=156.47 Aligned_cols=76 Identities=21% Similarity=0.216 Sum_probs=69.2
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+||+|||++..+. ++...+|+|+|+|++++.+.. .+++++++||+||||||+|||+||||.
T Consensus 250 ~lAl~Ak~~~vPfyV~a~~~kfd~~~~~--g~~i~iE~r~~~ev~~~~~~~~~~~~v~v~Np~FDvTP~~lIt~iITE~ 326 (344)
T PRK05720 250 QLAIAAKYHGVPFYVAAPSSTIDLTLAD--GKEIPIEERDPEEVTEVGGVRIAPEGVKVYNPAFDVTPAELITGIITEK 326 (344)
T ss_pred HHHHHHHHhCCCEEEeccccccCcCCCC--CcccccccCCHHHhcccCCcccCCCCceeecccccCCCHHHCCEEEcCC
Confidence 4789999999999999999999999998 888999999999999886543 346899999999999999999999985
No 5
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=99.89 E-value=5.1e-24 Score=153.49 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=68.1
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
-+|++||+|+|||||+||+|||++.++. +++..+|+|+|+|+..+.+.. .+++++++||.||||||+|||+||||.
T Consensus 222 ~lA~~Ak~~~vPv~V~a~s~K~~~~~~~--g~~i~~e~~~~~ev~~~~~~~~~~~~~~v~np~fD~TP~~lIt~iiTe~ 298 (303)
T TIGR00524 222 QLAVLAKEFRIPFFVAAPLSTFDTKTSC--GEDIVIEERDPEEVAQVGGVRIAPLGVKVYNPAFDITPHDLIDAIITEK 298 (303)
T ss_pred HHHHHHHHhCCCEEEecccccccCCCCC--ccccccccCCHHHhccccCcccCCCCceeecccccCCCHHHCCEEEcCC
Confidence 3789999999999999999999999998 888999999999998775432 246899999999999999999999995
No 6
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=99.89 E-value=6.7e-24 Score=154.57 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=68.5
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+||+|||++.++. +.+..+|+|+|+|+..+.+.. .+++++++||+||||||+|||+||||.
T Consensus 250 ~lA~~Ak~~~vPfyV~a~~~kfd~~~~~--~~~i~iE~r~p~ev~~~~g~~~~~~~~~v~Np~FD~TP~~lIt~iITe~ 326 (331)
T TIGR00512 250 QLAVLAKHHGVPFYVAAPTSTIDLETKD--GAEIPIEERPPEEVTHVGGVRIAPPGIDVWNPAFDVTPAELITGIITEK 326 (331)
T ss_pred HHHHHHHHhCCCEEEeccccccccCCCC--ccccccccCCHHHhcccCCcccCCCCceeecccccCCCHHHCCEEEccC
Confidence 4789999999999999999999999988 888899999999998875432 357899999999999999999999985
No 7
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=99.88 E-value=9.2e-24 Score=148.84 Aligned_cols=76 Identities=37% Similarity=0.645 Sum_probs=62.0
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+|++|||++.++. ++...+|+++|++++++.+.. ..+++++.||.||+|||+|||+||||+
T Consensus 201 ~~a~~Ak~~~vPv~v~~~~~K~~~~~~~--~~~~~~e~~~~~~v~~~~~~~~~~~~v~~~~p~~D~tP~~~It~~iTe~ 277 (282)
T PF01008_consen 201 QLALAAKEFNVPVYVLAESYKFSPRYPL--DQDSFNELRDPQEVLPFDGSSIVPENVDVINPLFDYTPPDLITLIITEL 277 (282)
T ss_dssp HHHHHHHHTT-EEEEE--GGGBETTCSS--GGGSSS-B--THHHHEETTEEESTTTEEEE-BSEEEEEGGG-SEEEETT
T ss_pred HHHHHHHhhCCCEEEEcccccccccccc--cchhhhhccccceeeccCCcccccceeeccCccEeecCHHHCCEEEcCC
Confidence 4789999999999999999999999999 999999999999999987653 345899999999999999999999995
No 8
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=99.88 E-value=1.3e-23 Score=154.28 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=69.1
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCccccccccccccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
-+|++||+|+|||||+||++||++.++. +++..+|.|+|+|++++.+....++++++||+||||||+|||+||||.
T Consensus 263 ~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~--~~~i~iE~r~~~ev~~~~~~~~~~~~~v~NPaFDvTPp~lIt~iITE~ 338 (356)
T PRK08334 263 TLAVLAKEHGIPFFTVAPLSTIDMSLKS--GKEIPIEERSPEEVLTCGGCRIAPDVDVYNPAFDVTPHKYLTGIITDR 338 (356)
T ss_pred HHHHHHHHhCCCEEEEcccCccCCCCCC--CcccccccCChHHheeccCcccCCCcceecccccCCCHHHCCEEEcCC
Confidence 3789999999999999999999999887 888899999999999987654445899999999999999999999985
No 9
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.3e-23 Score=150.25 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=69.4
Q ss_pred HhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
+|++||+|||||||+||+.+|+..... +.++.+|.|+|+||+.+.+.. .++++.++||+||+||++|||+||||.
T Consensus 254 lAvlAk~~gIPFyVaAP~sTiD~~~~~--G~~I~IEER~p~Ev~~v~g~riap~~v~~yNPAFDvTP~~lItgIITEk 329 (346)
T COG0182 254 LAVLAKHHGIPFYVAAPLSTIDFELKS--GEDIPIEERDPEEVLEVGGVRIAPEGVEAYNPAFDVTPPELITGIITEK 329 (346)
T ss_pred HHHHHHHcCCCeEEEcccCccccccCC--CCccceeecCHHHeEeeccEEeCCCCccccCccccCChHHhcceeeecc
Confidence 799999999999999999999999887 889999999999999988754 467899999999999999999999983
No 10
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.86 E-value=1.1e-22 Score=149.75 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=65.2
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
-+|++||+|+|||||+||+|||++.++. + +..+|+|+|+|++.+.+.. .+++++++||+||||||+|||+||||.
T Consensus 271 ~lA~~Ak~~~vPfyV~ap~~k~d~~~~~--~-~i~ieer~p~ev~~~~~~~~~~~~~~v~Np~FDvTP~~lIt~iITE~ 346 (363)
T PRK05772 271 KEAVIAHELGIPFYALAPTSTFDLKSDV--N-DVKIEERDPNEVRTIRGVPITPEDVNVYNPVFDVTPPKYITGIITEK 346 (363)
T ss_pred HHHHHHHHhCCCEEEEccccccCccccc--c-ccccccCCHHHhcccCCceecCCCceeeccCccCCCHHHCCEEEccC
Confidence 3799999999999999999999999875 4 4456889999998876543 357899999999999999999999985
No 11
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.85 E-value=1.9e-22 Score=147.36 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=66.4
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
-+|++||+|+|||||+||++||++..+. + ++.+|+|+|+|+..+.+.. .+++++++||+||||||+|||+||||.
T Consensus 250 ~lA~~Ak~~~vPfyV~ap~s~~d~~~~~--g-~i~iE~r~~~Ev~~~~~~~~~~~~v~v~Np~FDvTP~~lIt~iITE~ 325 (339)
T PRK06036 250 THSVLAKEHEIPFYVAAPLSTFDFEGWE--G-SVKIEERDPDELRYCGKTQIAPKDVPVYNPAFDATPMENVTAIITEK 325 (339)
T ss_pred HHHHHHHHhCCCEEEEeecCccCCCcCC--C-CcccccCCHHHhccccCcccCCCCceeeCcccccCCHHHCCEEEccC
Confidence 3789999999999999999999998766 6 7789999999998876543 357899999999999999999999985
No 12
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.8e-22 Score=145.44 Aligned_cols=72 Identities=26% Similarity=0.334 Sum_probs=65.7
Q ss_pred HhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCccccccccccccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
||++||++++||||||++|||+|.+++ |+...+++|+++++....+. .+.+++||+||+|||+||+++|||+
T Consensus 213 lA~~A~e~~~Pf~v~aesyKf~p~~~~--~~~~~~~~~~~~e~~~~~~~---~~~~v~Np~fD~TP~~~Id~iITe~ 284 (301)
T COG1184 213 LALAARELRVPFYVVAESYKFVPKTLL--DTLVEIELRDPLEVAREEPL---GNLKVRNPAFDVTPPEYIDAIITEL 284 (301)
T ss_pred HHHHHHHhCCCEEEEeeeecccccccC--CCcceeeccChhhccccCcc---cCccccccccCCCcHHHhheeeecC
Confidence 788999999999999999999999999 99999999999999854322 3689999999999999999999985
No 13
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.85 E-value=2.7e-22 Score=146.06 Aligned_cols=76 Identities=17% Similarity=0.074 Sum_probs=66.3
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
-+|++||+|+||||||||++||++.... +....+|+|+|+|++.+.+.. .+++++++||+||+|||+|||+||||.
T Consensus 240 ~lAl~Ak~~~VPfyV~a~~~t~d~~~~~--g~~i~iEer~~~ev~~~~g~~~~p~~~~v~Np~FDvTP~elIt~iITE~ 316 (329)
T PRK06371 240 EKAVLAKVNGIPFYVAAPGSTFDFSIKS--GDEIPIEERDENEVLEINGCRIGPQESHARNPAFDVTPNEYVTGFITEY 316 (329)
T ss_pred HHHHHHHHcCCCEEEeccccccCCCCCC--cCccccccCCHHHeeccCCeecCCCCccccCcCccCCCHHHCCEEEccC
Confidence 4789999999999999999888877666 777889999999999886542 356789999999999999999999985
No 14
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=99.83 E-value=2.8e-21 Score=137.95 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=55.7
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCccccccccccccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
-+|++||+|+|||||+||+|||++.++. + +..+|.|++ ..++++++||+||+|||+|||+||||.
T Consensus 202 ~lA~~Ak~~~vPfyV~a~~~k~~~~~~~--~-~i~ieer~~----------~~~~~~v~Np~FDvTP~~lIt~iITE~ 266 (275)
T PRK08335 202 LLALACHDNGVPFYVAAETFKFHPELKS--E-EVELVERPY----------ARQGHRVRNVLFDVTPWKYVRGIITEL 266 (275)
T ss_pred HHHHHHHHcCCCEEEECccceecccCCC--C-CccccccCC----------CCCCceecCcCccCCCHHHCCEEEccC
Confidence 3789999999999999999999999876 6 555666643 136789999999999999999999984
No 15
>KOG1468|consensus
Probab=99.78 E-value=2.2e-20 Score=134.04 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=68.9
Q ss_pred HhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc----ccCceeeeccceeecCCCCeeEEeeC
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD----LVSKVQVFNPEYDYVPPELVSLFISN 79 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~----~~~~~~v~nP~fD~tPpelIt~~ITe 79 (80)
||++|||||+||||+||...++-..+. ++++.+|.|+|+|.....++. ...++.+|||+||+||.+|||+||||
T Consensus 259 LAv~aKhhgipFyvaaP~tsid~~l~t--G~eIiIEERp~~Em~~v~gg~~v~Iaapgi~vwnPAFDvTPa~LItgIiTe 336 (354)
T KOG1468|consen 259 LAVLAKHHGIPFYVAAPFTSIDLSLAT--GDEIIIEERPPAEMTHVTGGEGVRIAAPGINVWNPAFDVTPAELITGIITE 336 (354)
T ss_pred HHHHHHhcCCceEEeccccccccccCC--CCeeEEeecCchHheeecCCcceEecCCCCCccCccccCCHHHHHHHHhhh
Confidence 799999999999999999999999999 999999999999999887542 24689999999999999999999998
Q ss_pred C
Q psy2576 80 T 80 (80)
Q Consensus 80 ~ 80 (80)
.
T Consensus 337 ~ 337 (354)
T KOG1468|consen 337 K 337 (354)
T ss_pred c
Confidence 4
No 16
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=99.76 E-value=3.2e-19 Score=126.21 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=52.8
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCccccccccccccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+|++|||++.++. ++....+.+ + .. ...++++++||.||+|||+|||++|||.
T Consensus 176 ~~Al~A~~~~vPv~V~~~s~Kf~~~~~~--~~~~~~~~~-~-----~~--~~~~~l~v~Np~FD~TPpelI~~iITE~ 243 (253)
T PRK06372 176 PLALCARYLKKPFYSLTISMKIERNFLY--STYPNFKNH-P-----CS--EWNIDIPCINRYFDKTPPDLIDYYINEN 243 (253)
T ss_pred HHHHHHHHcCCCEEEEeeccccCCCCcc--ccccccccc-c-----cc--cCCCCCceeCcCcCCCCHHHCCEEEcCC
Confidence 6899999999999999999999998876 443211111 1 01 1135789999999999999999999995
No 17
>KOG1467|consensus
Probab=99.74 E-value=1.6e-19 Score=136.45 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=68.3
Q ss_pred chHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccc---------ccccCceeeeccceeecCCCC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEH---------RDLVSKVQVFNPEYDYVPPEL 72 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~---------~~~~~~~~v~nP~fD~tPpel 72 (80)
+|+|++|++|+|||+||||+|||+.+.++ |....||+++|..+....+ +....+++.+|-.||.|||||
T Consensus 451 a~valvAna~nVPVlVCCE~yKF~eRvQl--Dsi~~NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~TPpel 528 (556)
T KOG1467|consen 451 ACVALVANAFNVPVLVCCEAYKFHERVQL--DSIVSNELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDVTPPEL 528 (556)
T ss_pred HHHHHHhcccCCCEEEEechhhhhhhhhh--hhhhhcccCChhhhhhccCcchhhhhhccccccccchhheeeccCcHHH
Confidence 69999999999999999999999999999 9999999999997654443 122467999999999999999
Q ss_pred eeEEeeCC
Q psy2576 73 VSLFISNT 80 (80)
Q Consensus 73 It~~ITe~ 80 (80)
|+.+|||+
T Consensus 529 Is~vVTe~ 536 (556)
T KOG1467|consen 529 ISAVVTEL 536 (556)
T ss_pred HHHHHhhc
Confidence 99999985
No 18
>KOG1466|consensus
Probab=99.70 E-value=1.2e-18 Score=124.09 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=57.8
Q ss_pred HhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
+|+.||+.++||||+||+|||.++||+ +|.+....+. .++|.... ..+++...+|..|||||+|||++|||+
T Consensus 224 ~~v~Ak~~~kPfYV~AES~KFvRlfPL--nQ~Dlp~~~~---p~~f~~~~~~~~~~~~e~p~vDYTpPeyiTlL~TDL 296 (313)
T KOG1466|consen 224 VAVCAKSMNKPFYVVAESHKFVRLFPL--NQKDLPPALP---PFKFSRPVPEREDVEREHPTVDYTPPEYLTLLFTDL 296 (313)
T ss_pred hhhhHHhcCCCeEEEeeccceeeeccC--cccccccccC---CcccCCCCCcHHhhhhcCCCcccChHHHHHHHHhhc
Confidence 688999999999999999999999999 8887543332 23443221 124788899999999999999999986
No 19
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=78.02 E-value=1.4 Score=33.40 Aligned_cols=24 Identities=13% Similarity=-0.159 Sum_probs=19.8
Q ss_pred hHhhhhccCCCcEEEECccCcccC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSP 26 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~ 26 (80)
-+|-+||.|+|||+++|++-+..-
T Consensus 307 gVA~~Akk~~vPvIaiaGs~~~~~ 330 (378)
T COG1929 307 GVAKLAKKYGVPVIAIAGSLGEDY 330 (378)
T ss_pred HHHHhhhhhCCCEEEEecccccCc
Confidence 468899999999999999755443
No 20
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=75.22 E-value=1.6 Score=32.93 Aligned_cols=25 Identities=16% Similarity=0.021 Sum_probs=17.3
Q ss_pred hHhhhhccCCCcEEEECccCcccCc
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQ 27 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~ 27 (80)
.+|-+||.|+|||+++|++-.....
T Consensus 307 ~Va~~A~~~~vPviav~G~~~~~~~ 331 (377)
T PF02595_consen 307 GVARLAKKHGVPVIAVAGSVDLDAE 331 (377)
T ss_dssp HHHCCHCCTT--EEEEECEC-TT--
T ss_pred HHHHHHHHcCCcEEEEeCCCCCChH
Confidence 4677899999999999999776553
No 21
>PRK09932 glycerate kinase II; Provisional
Probab=75.12 E-value=1.9 Score=32.67 Aligned_cols=24 Identities=17% Similarity=-0.105 Sum_probs=19.9
Q ss_pred hHhhhhccCCCcEEEECccCcccC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSP 26 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~ 26 (80)
-+|-.||+++|||+++|++.+...
T Consensus 307 ~Va~~A~~~~~Pvi~i~G~~~~~~ 330 (381)
T PRK09932 307 GVASVAKQFNVPVIGIAGVLGDGV 330 (381)
T ss_pred HHHHHHHHcCCCEEEEecccCCCh
Confidence 367789999999999999976543
No 22
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=73.58 E-value=2 Score=32.34 Aligned_cols=24 Identities=13% Similarity=-0.114 Sum_probs=20.3
Q ss_pred hHhhhhccCCCcEEEECccCcccC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSP 26 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~ 26 (80)
-+|-.||+++|||+++|++-+...
T Consensus 306 ~Va~~A~~~~vPviai~G~v~~~~ 329 (375)
T TIGR00045 306 GVAKRAKKYGVPVIAIAGSLGDGV 329 (375)
T ss_pred HHHHHHHHhCCeEEEEecccCCCh
Confidence 467789999999999999986654
No 23
>PRK10342 glycerate kinase I; Provisional
Probab=73.16 E-value=2.3 Score=32.16 Aligned_cols=24 Identities=13% Similarity=-0.162 Sum_probs=20.2
Q ss_pred hHhhhhccCCCcEEEECccCcccC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSP 26 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~ 26 (80)
-+|-.||+++|||+++|++-+...
T Consensus 307 gVa~~A~~~~vPviai~G~~~~~~ 330 (381)
T PRK10342 307 GVANVAKKYHKPVIGIAGSLTDDV 330 (381)
T ss_pred HHHHHHHHhCCCEEEEecccCCCh
Confidence 367789999999999999976654
No 24
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=66.52 E-value=3.1 Score=24.15 Aligned_cols=17 Identities=12% Similarity=-0.263 Sum_probs=14.3
Q ss_pred HhhhhccCCCcEEEECc
Q psy2576 4 LGSNLCSPVYQVIVLAP 20 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~ 20 (80)
.|++|++.++|.++-++
T Consensus 45 ~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 45 AAILARELGIPAIVGVG 61 (80)
T ss_dssp HHHHHHHTT-EEEESTT
T ss_pred HHHHHHHcCCCEEEeec
Confidence 48899999999999886
No 25
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=60.45 E-value=2.5 Score=25.39 Aligned_cols=17 Identities=6% Similarity=-0.379 Sum_probs=14.1
Q ss_pred CchHhhhhccCCCcEEE
Q psy2576 1 MPCLGSNLCSPVYQVIV 17 (80)
Q Consensus 1 ~~~~A~~Ak~~~vPv~V 17 (80)
+.|++++|++||+|+=.
T Consensus 9 l~~l~~i~~~~g~~~~~ 25 (121)
T cd02417 9 LLALVLLARYHGIAADP 25 (121)
T ss_pred HHHHHHHHHHcCCCCCH
Confidence 36899999999999764
No 26
>PRK05634 nucleosidase; Provisional
Probab=59.99 E-value=5.3 Score=26.89 Aligned_cols=21 Identities=0% Similarity=-0.167 Sum_probs=16.9
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
+++|.+|+.+++||+++=.-.
T Consensus 135 aAva~va~~~~vPf~~iR~IS 155 (185)
T PRK05634 135 YAVAAVAAEFGVPCRLVKHVS 155 (185)
T ss_pred HHHHHHHHHhCCCEEEEEEec
Confidence 468999999999999875433
No 27
>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification. ; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.
Probab=58.35 E-value=3.7 Score=25.04 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=10.8
Q ss_pred CchHhhhhccCCCcE
Q psy2576 1 MPCLGSNLCSPVYQV 15 (80)
Q Consensus 1 ~~~~A~~Ak~~~vPv 15 (80)
++|+|++++++|+++
T Consensus 15 ~acl~~l~~~~g~~~ 29 (131)
T PF03412_consen 15 LACLAMLLKYYGIPV 29 (131)
T ss_dssp HHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhCCCc
Confidence 379999999999987
No 28
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=55.05 E-value=5.8 Score=28.67 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=20.8
Q ss_pred HhhhhccCCCcEEEECccCcccCc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSPQ 27 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~~ 27 (80)
-|.+|-++||||..++|.-+++..
T Consensus 139 Na~~Ag~~gVPV~lVsGDd~~~~e 162 (270)
T cd08769 139 NAAYAGEFGVPVVLVAGDSELEKE 162 (270)
T ss_pred HHHHHhhcCCCEEEEecCHHHHHH
Confidence 367899999999999999888764
No 29
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=53.73 E-value=8 Score=26.50 Aligned_cols=23 Identities=4% Similarity=0.054 Sum_probs=18.1
Q ss_pred chHhhhhccCCCcEEEECccCcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
+++|.+|+.+++||+++=.-...
T Consensus 175 aAva~va~~~~ip~~~iR~ISD~ 197 (228)
T TIGR01704 175 TAIAHVCHNFNVPFVVVRAISDV 197 (228)
T ss_pred HHHHHHHHHhCCCEEEEEEeccc
Confidence 47889999999999987654443
No 30
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=53.03 E-value=6.5 Score=28.37 Aligned_cols=23 Identities=9% Similarity=-0.119 Sum_probs=20.8
Q ss_pred HhhhhccCCCcEEEECccCcccC
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSP 26 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~ 26 (80)
-|.+|.++||||..++|.-+++.
T Consensus 139 na~~Ag~~gVPV~lvsGD~~~~~ 161 (263)
T cd08770 139 NAYTAAYLGVPVVFVSGDAGLCA 161 (263)
T ss_pred HHHHHhhcCCCEEEEecCHHHHH
Confidence 36789999999999999999987
No 31
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=52.29 E-value=6.9 Score=28.25 Aligned_cols=25 Identities=4% Similarity=-0.170 Sum_probs=21.8
Q ss_pred hHhhhhccCCCcEEEECccCcccCc
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQ 27 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~ 27 (80)
.-|.+|.++||||..++|.-+++..
T Consensus 138 lna~~Ag~~gVPV~lVsGDd~~~~e 162 (266)
T cd08663 138 LNAAVAGEYGVPVVLVTGDDAACAE 162 (266)
T ss_pred HHHHHHhhcCCCEEEEecCHHHHHH
Confidence 3478899999999999999999873
No 32
>KOG3325|consensus
Probab=52.10 E-value=9.3 Score=26.00 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=23.1
Q ss_pred chHhhhhccCCCcEEEECccCcccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKLSP 26 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~~~ 26 (80)
..||++|++.+|-..+-.++|||.-
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~A 121 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEA 121 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEE
Confidence 4689999999999999999999975
No 33
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=52.04 E-value=3.9 Score=24.90 Aligned_cols=16 Identities=13% Similarity=-0.105 Sum_probs=13.2
Q ss_pred CchHhhhhccCCCcEE
Q psy2576 1 MPCLGSNLCSPVYQVI 16 (80)
Q Consensus 1 ~~~~A~~Ak~~~vPv~ 16 (80)
++|++++++++|+|+=
T Consensus 14 l~~l~~~~~~~g~~~~ 29 (136)
T cd02418 14 AACLAMIAKYYGKNYS 29 (136)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 3699999999998863
No 34
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=51.35 E-value=9.5 Score=26.37 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=17.6
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
+++|.+|..+++||+++=.-..
T Consensus 174 aAva~v~~~~~vpfl~iR~ISD 195 (233)
T PRK14697 174 AAIGHVAYINEVPFLVIRCISD 195 (233)
T ss_pred HHHHHHHHHcCCCEEEEEEecc
Confidence 5789999999999998754443
No 35
>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this sub-family.
Probab=50.80 E-value=4 Score=24.63 Aligned_cols=23 Identities=9% Similarity=-0.197 Sum_probs=16.9
Q ss_pred CchHhhhhccCCCcEEEECccCc
Q psy2576 1 MPCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 1 ~~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
+.|++++|++||+|+=.-.-..+
T Consensus 9 l~~l~~i~~~~g~~~~~~~l~~~ 31 (124)
T cd02421 9 LDCLVLLARQFGKPASRDSLVAG 31 (124)
T ss_pred HHHHHHHHHHhCCCCCHHHHHhc
Confidence 35899999999999875444333
No 36
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=50.05 E-value=7.7 Score=28.02 Aligned_cols=23 Identities=9% Similarity=-0.141 Sum_probs=20.7
Q ss_pred HhhhhccCCCcEEEECccCcccC
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSP 26 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~ 26 (80)
-|.+|-++||||..++|.-+++.
T Consensus 138 na~~Ag~~gVPV~lvsGDd~~~~ 160 (265)
T cd00281 138 NALTAGYYGVPVVMVAGDAEVCK 160 (265)
T ss_pred HHHHHhhcCCCEEEEecCHHHHH
Confidence 36789999999999999999987
No 37
>PRK07077 hypothetical protein; Provisional
Probab=49.67 E-value=10 Score=26.73 Aligned_cols=21 Identities=0% Similarity=-0.183 Sum_probs=16.5
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
+++|.+|+++++||+++=.-.
T Consensus 146 aAvA~va~~~giPf~viR~IS 166 (238)
T PRK07077 146 HIAAAFAAARGLPFAACRVIV 166 (238)
T ss_pred HHHHHHHHHcCCCEEEEEEEE
Confidence 367888999999999975433
No 38
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=49.26 E-value=10 Score=26.46 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=16.7
Q ss_pred chHhhhhccCCCcEEEECcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPL 21 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~ 21 (80)
+++|.+|..++|||.++=.-
T Consensus 179 aaia~v~~~~~vP~~~ir~I 198 (234)
T COG0775 179 AAIAQVCYRFGVPFLVLRAI 198 (234)
T ss_pred HHHHHHHHHhCCCEEEEEEe
Confidence 57899999999999987543
No 39
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=48.15 E-value=11 Score=26.22 Aligned_cols=18 Identities=11% Similarity=-0.201 Sum_probs=15.7
Q ss_pred chHhhhhccCCCcEEEEC
Q psy2576 2 PCLGSNLCSPVYQVIVLA 19 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a 19 (80)
+++|.+|..++|||.++=
T Consensus 151 aAvAqVc~~~~vPfl~iR 168 (212)
T PRK06026 151 YAVLRACQAFGVPLIGLR 168 (212)
T ss_pred HHHHHHHHHcCCCEEEEE
Confidence 578999999999999864
No 40
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=47.30 E-value=12 Score=26.18 Aligned_cols=22 Identities=5% Similarity=-0.106 Sum_probs=17.9
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
+++|.+|..+++||+++=.-..
T Consensus 175 aAvA~vc~~~~vP~l~IR~ISD 196 (236)
T PRK06714 175 AAFAYVCQINKKPFLCLKAASD 196 (236)
T ss_pred HHHHHHHHHhCCCEEEEEEecc
Confidence 5789999999999998765444
No 41
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=46.80 E-value=12 Score=25.85 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=17.0
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
+++|.+|+.+++||+++=...
T Consensus 164 aAiaqv~~~~~vpf~~ir~IS 184 (218)
T PRK07164 164 FALAQVCFKNKVKFYCIKYVS 184 (218)
T ss_pred HHHHHHHHHcCCCEEEEEEEc
Confidence 578999999999999865433
No 42
>cd02259 Peptidase_C39_like Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in all sub-families.
Probab=45.99 E-value=6.2 Score=23.41 Aligned_cols=14 Identities=29% Similarity=0.138 Sum_probs=12.4
Q ss_pred chHhhhhccCCCcE
Q psy2576 2 PCLGSNLCSPVYQV 15 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv 15 (80)
.|++++|+++++|+
T Consensus 10 ~~l~~i~~~~g~~~ 23 (122)
T cd02259 10 ACLQMLLRYFGIPV 23 (122)
T ss_pred HHHHHHHHHcCCCC
Confidence 68999999999986
No 43
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=45.47 E-value=13 Score=26.10 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=14.1
Q ss_pred hccCCCcEEEECccCcc
Q psy2576 8 LCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 8 Ak~~~vPv~V~a~~~K~ 24 (80)
+|+|++||||+.+--++
T Consensus 85 ike~di~fiVvSsGm~~ 101 (220)
T COG4359 85 IKEHDIPFIVVSSGMDP 101 (220)
T ss_pred HHHcCCCEEEEeCCCch
Confidence 68999999999876553
No 44
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=44.93 E-value=14 Score=25.18 Aligned_cols=21 Identities=5% Similarity=0.023 Sum_probs=17.2
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
+++|.+|+++++||+++--..
T Consensus 135 aava~va~~~gip~~~ir~IS 155 (212)
T TIGR03468 135 GAVAAVAAAAGLPFAVIRVIS 155 (212)
T ss_pred HHHHHHHHHcCCCEEEEEEEe
Confidence 468899999999999885443
No 45
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=43.67 E-value=7.1 Score=23.54 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=12.9
Q ss_pred chHhhhhccCCCcEE
Q psy2576 2 PCLGSNLCSPVYQVI 16 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~ 16 (80)
.|+++++++||+|+=
T Consensus 15 ~~l~~~~~~~g~~~~ 29 (127)
T cd02419 15 ACLAMIASYHGHHVD 29 (127)
T ss_pred HHHHHHHHHcCCCCC
Confidence 688999999998875
No 46
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=43.43 E-value=15 Score=27.71 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=17.5
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
+++|.+|..++|||+++=.-..
T Consensus 174 aava~va~~~~vp~~~iR~iSD 195 (459)
T PRK06698 174 AAIGHVAYINEVPFLVIRCISD 195 (459)
T ss_pred HHHHHHHHHcCCCEEEEEEecc
Confidence 5789999999999998754443
No 47
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=41.86 E-value=15 Score=25.14 Aligned_cols=24 Identities=8% Similarity=-0.088 Sum_probs=18.5
Q ss_pred chHhhhhccCCCcEEEECccCccc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
+++|.+|+.+++||+++-.-..+.
T Consensus 174 aava~va~~~~vP~~~IR~ISD~~ 197 (222)
T TIGR03664 174 FAVALAALRYGVPFLELRGISNLV 197 (222)
T ss_pred HHHHHHHHHhCCCEEEEEeeccCC
Confidence 478899999999999885444443
No 48
>cd02424 Peptidase_C39E A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family, which contains Colicin V perocessing peptidase.
Probab=41.48 E-value=11 Score=23.16 Aligned_cols=15 Identities=0% Similarity=-0.321 Sum_probs=13.0
Q ss_pred chHhhhhcc-CCCcEE
Q psy2576 2 PCLGSNLCS-PVYQVI 16 (80)
Q Consensus 2 ~~~A~~Ak~-~~vPv~ 16 (80)
+||+++|++ ||+++=
T Consensus 15 a~l~~i~~~~~g~~~~ 30 (129)
T cd02424 15 AVIQMLYNHYYKKKYD 30 (129)
T ss_pred HHHHHHHHHhcCCCcc
Confidence 699999999 998874
No 49
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=40.76 E-value=17 Score=25.32 Aligned_cols=18 Identities=11% Similarity=-0.326 Sum_probs=15.6
Q ss_pred chHhhhhccCCCcEEEEC
Q psy2576 2 PCLGSNLCSPVYQVIVLA 19 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a 19 (80)
+++|.+|..+++||+++=
T Consensus 151 aAia~vc~~~~vpf~~iR 168 (212)
T TIGR01705 151 FACLRACQLFDVPLIGLR 168 (212)
T ss_pred HHHHHHHHHcCCCEEEEE
Confidence 478999999999999864
No 50
>PRK08236 hypothetical protein; Provisional
Probab=40.18 E-value=17 Score=24.94 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=15.7
Q ss_pred chHhhhhccCCCcEEEECc
Q psy2576 2 PCLGSNLCSPVYQVIVLAP 20 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~ 20 (80)
+++|-+|..+++||+++=.
T Consensus 164 aAvA~vc~~~~vPf~~iR~ 182 (212)
T PRK08236 164 FGVAEAAAAAGLPVLELRA 182 (212)
T ss_pred HHHHHHHHHhCCCEEEEEE
Confidence 4688899999999998643
No 51
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=40.11 E-value=15 Score=25.28 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=18.5
Q ss_pred HhhhhccCCCcEEEECccCcccC
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSP 26 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~ 26 (80)
|.-+|+++++||++++..-+-..
T Consensus 162 Lk~lA~~~~i~vi~~sQlnr~~~ 184 (259)
T PF03796_consen 162 LKALAKELNIPVIALSQLNREAE 184 (259)
T ss_dssp HHHHHHHHTSEEEEEEEBSGGGG
T ss_pred HHHHHHHcCCeEEEccccChhhh
Confidence 55689999999999998766543
No 52
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=39.91 E-value=21 Score=27.06 Aligned_cols=18 Identities=22% Similarity=-0.086 Sum_probs=13.2
Q ss_pred HhhhhccCCCcEEEECcc
Q psy2576 4 LGSNLCSPVYQVIVLAPL 21 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~ 21 (80)
++-+||+|++|+|+=+++
T Consensus 162 l~~la~~~~lp~i~Dlgs 179 (367)
T PF03841_consen 162 LAELAKEHGLPVIVDLGS 179 (367)
T ss_dssp HHHHHHHHT--EEEE-TT
T ss_pred HHHHHhhcCCcEEEECCC
Confidence 566899999999999988
No 53
>PRK07004 replicative DNA helicase; Provisional
Probab=38.77 E-value=20 Score=27.44 Aligned_cols=21 Identities=29% Similarity=0.154 Sum_probs=17.0
Q ss_pred hHhhhhccCCCcEEEECccCc
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K 23 (80)
.|-.+||++++||++++-.-+
T Consensus 355 ~LK~lAkel~ipVi~lsQLnR 375 (460)
T PRK07004 355 SLKSLAKELDVPVIALSQLNR 375 (460)
T ss_pred HHHHHHHHhCCeEEEEeccCh
Confidence 456789999999999995543
No 54
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=38.31 E-value=8.9 Score=27.65 Aligned_cols=25 Identities=8% Similarity=-0.154 Sum_probs=19.7
Q ss_pred HhhhhccCCCcEEEECccCcccCcC
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSPQF 28 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~~~ 28 (80)
-|.+|-++||||.-++|.-+++..-
T Consensus 139 na~~Ag~~GVPV~lVsGD~~l~~ea 163 (265)
T PF04951_consen 139 NAALAGYYGVPVVLVSGDDALCEEA 163 (265)
T ss_dssp HHHHHHHTT--EEEEEEEHHHHHHH
T ss_pred HHHHHhhcCCcEEEEeCcHHHHHHH
Confidence 4778999999999999999888754
No 55
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=37.85 E-value=12 Score=22.56 Aligned_cols=16 Identities=19% Similarity=-0.089 Sum_probs=13.1
Q ss_pred chHhhhhccCCCcEEE
Q psy2576 2 PCLGSNLCSPVYQVIV 17 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V 17 (80)
+|++++|++||+|+=.
T Consensus 15 ~~l~~i~~~~g~~~~~ 30 (125)
T cd02420 15 ASLAIILAYYGRYVPL 30 (125)
T ss_pred HHHHHHHHHcCCCCCH
Confidence 6889999999988753
No 56
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=36.39 E-value=29 Score=26.02 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.6
Q ss_pred cCceeeeccceeec
Q psy2576 55 VSKVQVFNPEYDYV 68 (80)
Q Consensus 55 ~~~~~v~nP~fD~t 68 (80)
.+.++|-||.||=.
T Consensus 312 TGeMEVkNPLF~d~ 325 (341)
T PF06809_consen 312 TGEMEVKNPLFDDS 325 (341)
T ss_pred CCceeeeccccccc
Confidence 46799999999854
No 57
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=36.34 E-value=22 Score=24.01 Aligned_cols=23 Identities=4% Similarity=-0.008 Sum_probs=17.9
Q ss_pred chHhhhhccCCCcEEEECccCcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
++++.+|+++++|++++-....+
T Consensus 176 aa~a~va~~~~vp~~~ir~vSd~ 198 (230)
T PRK05584 176 AAIAQVCHEFGVPFVVVRAISDT 198 (230)
T ss_pred HHHHHHHHHcCCCEEEEEEeccC
Confidence 46888999999999987655443
No 58
>PRK08506 replicative DNA helicase; Provisional
Probab=35.02 E-value=26 Score=26.91 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=16.3
Q ss_pred HhhhhccCCCcEEEECccCc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K 23 (80)
|-.+||++++||++++..-+
T Consensus 334 LK~lAkel~ipVi~lsQLnR 353 (472)
T PRK08506 334 LKLLARELDIPIIALSQLNR 353 (472)
T ss_pred HHHHHHHhCCcEEEEeecCc
Confidence 45679999999999995544
No 59
>PRK08006 replicative DNA helicase; Provisional
Probab=33.28 E-value=34 Score=26.36 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=16.7
Q ss_pred hHhhhhccCCCcEEEECccCc
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K 23 (80)
.|-.+||++++||++++-.-+
T Consensus 367 ~LK~lAkel~ipVi~LsQLnR 387 (471)
T PRK08006 367 SLKALAKELQVPVVALSQLNR 387 (471)
T ss_pred HHHHHHHHhCCeEEEEEecCc
Confidence 356789999999999994443
No 60
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=33.15 E-value=26 Score=24.66 Aligned_cols=18 Identities=6% Similarity=-0.130 Sum_probs=15.9
Q ss_pred chHhhhhccCCCcEEEEC
Q psy2576 2 PCLGSNLCSPVYQVIVLA 19 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a 19 (80)
+++|.+|..+++||+.+=
T Consensus 186 aAia~va~~~gvp~~~IR 203 (249)
T PLN02584 186 AAVAYVADLLKVPAIFVK 203 (249)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 578999999999999873
No 61
>cd02423 Peptidase_C39G A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=31.93 E-value=15 Score=22.07 Aligned_cols=15 Identities=13% Similarity=-0.002 Sum_probs=12.5
Q ss_pred chHhhhhccCC-CcEE
Q psy2576 2 PCLGSNLCSPV-YQVI 16 (80)
Q Consensus 2 ~~~A~~Ak~~~-vPv~ 16 (80)
+|+++++++|+ +++=
T Consensus 15 ~~l~~~~~~~g~~~~~ 30 (129)
T cd02423 15 AALATLLRYYGGINIT 30 (129)
T ss_pred HHHHHHHHhcCCCCCC
Confidence 68899999999 8864
No 62
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=31.33 E-value=29 Score=26.76 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=14.4
Q ss_pred hHhhhhccCCCcEEEEC
Q psy2576 3 CLGSNLCSPVYQVIVLA 19 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a 19 (80)
.+|-+||+||+|++|=-
T Consensus 168 ~ia~iAh~~gvpliVDN 184 (426)
T COG2873 168 AIAEIAHRHGVPLIVDN 184 (426)
T ss_pred HHHHHHHHcCCcEEEec
Confidence 57889999999999843
No 63
>PRK05636 replicative DNA helicase; Provisional
Probab=31.24 E-value=36 Score=26.57 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=16.2
Q ss_pred HhhhhccCCCcEEEECccCc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K 23 (80)
|-.+||++++||++++..-+
T Consensus 407 LK~lAkel~ipVi~lsQLnR 426 (505)
T PRK05636 407 LKLLAKELDVPLIAISQLNR 426 (505)
T ss_pred HHHHHHHhCCeEEEEeecCc
Confidence 56789999999999995433
No 64
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=31.13 E-value=40 Score=25.06 Aligned_cols=22 Identities=27% Similarity=0.128 Sum_probs=17.6
Q ss_pred HhhhhccCCCcEEEECccCccc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
|-.+||++++||++++..-+=.
T Consensus 336 Lk~lAke~~i~Vi~lsQlnr~~ 357 (421)
T TIGR03600 336 LKALAKELDVPVVLLAQLNRGS 357 (421)
T ss_pred HHHHHHHhCCcEEEecccCcch
Confidence 4568999999999999765543
No 65
>PRK08760 replicative DNA helicase; Provisional
Probab=30.70 E-value=37 Score=26.14 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=16.2
Q ss_pred HhhhhccCCCcEEEECccCc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K 23 (80)
|-.+||++++||++++..-+
T Consensus 371 LK~lAkel~ipVi~lsQLnR 390 (476)
T PRK08760 371 LKGLAKELNVPVIALSQLNR 390 (476)
T ss_pred HHHHHHHhCCEEEEeeccCc
Confidence 45689999999999995543
No 66
>PRK06321 replicative DNA helicase; Provisional
Probab=30.65 E-value=35 Score=26.33 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=17.1
Q ss_pred HhhhhccCCCcEEEECccCcc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
|-.+||++++||++++..-+=
T Consensus 371 LK~lAkel~vpVi~lsQLnR~ 391 (472)
T PRK06321 371 LKNLARELNIPILCLSQLSRK 391 (472)
T ss_pred HHHHHHHhCCcEEEEeecChh
Confidence 556899999999999976543
No 67
>PRK06749 replicative DNA helicase; Provisional
Probab=30.05 E-value=38 Score=25.73 Aligned_cols=20 Identities=20% Similarity=0.051 Sum_probs=16.1
Q ss_pred HhhhhccCCCcEEEECccCc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K 23 (80)
|-.+||++++||++++..-.
T Consensus 332 LK~lAkel~vpVi~lsQLnR 351 (428)
T PRK06749 332 LKLLARELNVCVVALSQLSR 351 (428)
T ss_pred HHHHHHHhCCeEEEEEecCc
Confidence 55689999999999994443
No 68
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=29.94 E-value=15 Score=21.88 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=12.6
Q ss_pred chHhhhhccCCCcEEE
Q psy2576 2 PCLGSNLCSPVYQVIV 17 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V 17 (80)
.|++++|+++++++=.
T Consensus 15 ~~l~~~~~~~~~~~~~ 30 (126)
T cd02425 15 ACYAMILNYFGYKVSL 30 (126)
T ss_pred HHHHHHHHHhCCCCCH
Confidence 5888889999988653
No 69
>PLN02970 serine racemase
Probab=29.93 E-value=31 Score=24.95 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=17.8
Q ss_pred chHhhhhccCCCcEEEECcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPL 21 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~ 21 (80)
+.+|.+|+.+|+|++|+.+.
T Consensus 88 ~alA~~a~~~G~~~~ivvp~ 107 (328)
T PLN02970 88 AALALAAKLRGIPAYIVVPK 107 (328)
T ss_pred HHHHHHHHHcCCCEEEEECC
Confidence 46899999999999999985
No 70
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=29.86 E-value=24 Score=22.65 Aligned_cols=21 Identities=19% Similarity=0.012 Sum_probs=16.5
Q ss_pred hhccCCCcEEEECccCcccCc
Q psy2576 7 NLCSPVYQVIVLAPLYKLSPQ 27 (80)
Q Consensus 7 ~Ak~~~vPv~V~a~~~K~~~~ 27 (80)
+|+++++|++++|-..=..+.
T Consensus 5 ~a~r~~i~vi~Van~~h~~~~ 25 (130)
T PF02639_consen 5 VAKRYGIPVIFVANYSHRLPR 25 (130)
T ss_pred HHHHHCCEEEEEeCCCccCCC
Confidence 588999999999976655554
No 71
>PRK05595 replicative DNA helicase; Provisional
Probab=29.80 E-value=41 Score=25.40 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=16.2
Q ss_pred HhhhhccCCCcEEEECccCc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K 23 (80)
|-.+||++++||++++..-+
T Consensus 343 LK~lAke~~i~vi~lsQLnR 362 (444)
T PRK05595 343 IKALAKEMECPVIALSQLSR 362 (444)
T ss_pred HHHHHHHhCCeEEEeeccCc
Confidence 55689999999999995543
No 72
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=29.73 E-value=24 Score=21.01 Aligned_cols=11 Identities=0% Similarity=-0.230 Sum_probs=9.1
Q ss_pred hhccCCCcEEE
Q psy2576 7 NLCSPVYQVIV 17 (80)
Q Consensus 7 ~Ak~~~vPv~V 17 (80)
.|++||||++-
T Consensus 35 ~A~e~~VPi~~ 45 (82)
T TIGR00789 35 IAKKHGIPIVE 45 (82)
T ss_pred HHHHcCCCEEe
Confidence 58899999983
No 73
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=28.80 E-value=33 Score=24.07 Aligned_cols=24 Identities=4% Similarity=-0.287 Sum_probs=19.1
Q ss_pred chHhhhhccCCCcEEEECccCccc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
+.+|.+|+++++|+.+++-....+
T Consensus 192 aaea~~A~~~gv~~~~i~~vsd~a 215 (249)
T TIGR01700 192 VPEVIVARHCGLRVFGFSLITNKA 215 (249)
T ss_pred HHHHHHHHHcCCcEEEEEEEeecc
Confidence 567899999999999987554443
No 74
>PLN02565 cysteine synthase
Probab=28.72 E-value=34 Score=24.82 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=18.0
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
..+|.+|+..|+|++++.+..
T Consensus 80 ~alA~~a~~~G~~~~ivvp~~ 100 (322)
T PLN02565 80 IGLAFMAAAKGYKLIITMPAS 100 (322)
T ss_pred HHHHHHHHHcCCeEEEEeCCC
Confidence 368999999999999988764
No 75
>PRK11761 cysM cysteine synthase B; Provisional
Probab=28.71 E-value=35 Score=24.36 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=17.9
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
..+|.+|+.+|+|++++.+..
T Consensus 76 ~alA~~a~~~G~~~~i~~p~~ 96 (296)
T PRK11761 76 IALAMIAAIKGYRMKLIMPEN 96 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCC
Confidence 368899999999999998763
No 76
>PRK08840 replicative DNA helicase; Provisional
Probab=28.69 E-value=42 Score=25.81 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=16.5
Q ss_pred hHhhhhccCCCcEEEECccCc
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K 23 (80)
.|-.+||++++||++++-.-+
T Consensus 360 ~LK~lAkel~ipVi~LsQLnR 380 (464)
T PRK08840 360 SLKALAKELNVPVVALSQLNR 380 (464)
T ss_pred HHHHHHHHhCCeEEEEEecCc
Confidence 355789999999999994433
No 77
>PRK05748 replicative DNA helicase; Provisional
Probab=27.49 E-value=35 Score=25.73 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=17.0
Q ss_pred HhhhhccCCCcEEEECccCc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K 23 (80)
|-.+||++++||++++..-+
T Consensus 347 LK~lAke~~i~vi~lsQlnr 366 (448)
T PRK05748 347 LKALAKELKVPVIALSQLSR 366 (448)
T ss_pred HHHHHHHhCCeEEEecccCh
Confidence 55689999999999998655
No 78
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=27.39 E-value=36 Score=23.91 Aligned_cols=21 Identities=5% Similarity=-0.339 Sum_probs=17.3
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
+..+.+|+++|+||.+++-..
T Consensus 186 ~~e~~~A~~~gi~~~~i~~vs 206 (261)
T PRK08666 186 VPEAVLARELEMCYATVAIVT 206 (261)
T ss_pred HHHHHHHHHCCCcEEEEEEEe
Confidence 467899999999999986543
No 79
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=27.00 E-value=37 Score=22.62 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=16.8
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
++++.+|+++++|++++.....
T Consensus 178 aa~~~~a~~~~ip~~~i~~isD 199 (234)
T PF01048_consen 178 AAVAQAARERGIPFIAIRGISD 199 (234)
T ss_dssp HHHHHHHHHTT-EEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEEc
Confidence 4688899999999998876533
No 80
>PRK10717 cysteine synthase A; Provisional
Probab=26.29 E-value=42 Score=24.17 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=18.5
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
.++|.+|+.+|+|+.|+.+...
T Consensus 77 ~alA~~a~~~G~~~~vv~p~~~ 98 (330)
T PRK10717 77 IGLALVAAARGYKTVIVMPETQ 98 (330)
T ss_pred HHHHHHHHHcCCcEEEEeCCCC
Confidence 3688999999999999998643
No 81
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=25.84 E-value=39 Score=23.35 Aligned_cols=21 Identities=10% Similarity=-0.297 Sum_probs=17.4
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
++++.+|+++|+|+.+++-..
T Consensus 184 aa~~~vA~~~gv~~~~i~~Vs 204 (241)
T TIGR01694 184 VPEAVLARELELCYATLALVT 204 (241)
T ss_pred HHHHHHHHHCCCCEEEEEEEe
Confidence 578999999999999876433
No 82
>PRK06904 replicative DNA helicase; Validated
Probab=25.59 E-value=50 Score=25.46 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=15.2
Q ss_pred HhhhhccCCCcEEEECcc
Q psy2576 4 LGSNLCSPVYQVIVLAPL 21 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~ 21 (80)
|-.+||++++||++++..
T Consensus 366 LK~lAkel~ipVi~lsQL 383 (472)
T PRK06904 366 LKALAKELKVPVVALSQL 383 (472)
T ss_pred HHHHHHHhCCeEEEEEec
Confidence 556899999999999943
No 83
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=25.46 E-value=38 Score=23.89 Aligned_cols=24 Identities=8% Similarity=-0.215 Sum_probs=18.5
Q ss_pred chHhhhhccCCCcEEEECccCccc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
+..|++|++.|+||.+++-.....
T Consensus 186 ~pEa~~A~~~gi~~~~i~~Vtn~a 209 (245)
T PRK09136 186 MPEAALARELGLPYACLALVANWA 209 (245)
T ss_pred HHHHHHHHHcCCCEEEEEEEeecc
Confidence 356799999999999988654433
No 84
>PRK09165 replicative DNA helicase; Provisional
Probab=25.45 E-value=56 Score=25.31 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=16.5
Q ss_pred HhhhhccCCCcEEEECccCc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K 23 (80)
|-.+||++++||++++..-+
T Consensus 375 LK~lAkel~ipVi~lsQLnR 394 (497)
T PRK09165 375 LKALAKELNIPVIALSQLSR 394 (497)
T ss_pred HHHHHHHhCCeEEEeecccc
Confidence 55689999999999997444
No 85
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=25.22 E-value=44 Score=23.60 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=17.5
Q ss_pred hHhhhhccCCCcEEEECccC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~ 22 (80)
.+|.+|+.+|+|+.|+.+..
T Consensus 71 alA~~a~~~Gl~~~i~vp~~ 90 (298)
T TIGR01139 71 ALAMVAAARGYKLILTMPET 90 (298)
T ss_pred HHHHHHHHcCCeEEEEeCCc
Confidence 58899999999999998764
No 86
>PRK07476 eutB threonine dehydratase; Provisional
Probab=25.20 E-value=43 Score=24.07 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=17.8
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
..+|.+|+.+|+|++|+.+..
T Consensus 80 ~alA~~a~~~G~~~~i~vp~~ 100 (322)
T PRK07476 80 RALAYAARALGIRATICMSRL 100 (322)
T ss_pred HHHHHHHHHhCCCEEEEeCCC
Confidence 368899999999999988764
No 87
>KOG1251|consensus
Probab=24.99 E-value=50 Score=24.38 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=16.7
Q ss_pred hHhhhhccCCCcEEEECcc
Q psy2576 3 CLGSNLCSPVYQVIVLAPL 21 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~ 21 (80)
+||++||-.|+|-+++.|.
T Consensus 87 AlalaAk~~giPa~IVvP~ 105 (323)
T KOG1251|consen 87 ALALAAKILGIPATIVVPK 105 (323)
T ss_pred HHHHHHHhcCCCeEEEecC
Confidence 6899999999999998654
No 88
>COG1406 Predicted inhibitor of MCP methylation, homolog of CheC [Cell motility and secretion]
Probab=24.56 E-value=31 Score=23.09 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=11.1
Q ss_pred ccceeecCCCCeeE
Q psy2576 62 NPEYDYVPPELVSL 75 (80)
Q Consensus 62 nP~fD~tPpelIt~ 75 (80)
.=-||+|||-++++
T Consensus 108 g~~~DitpPav~~G 121 (153)
T COG1406 108 GFDFDITPPAVVSG 121 (153)
T ss_pred CceeecCCCeEEec
Confidence 34599999999875
No 89
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=24.39 E-value=48 Score=22.46 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=18.7
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
.++|.+|+..|+|++++.+.-.
T Consensus 63 ~alA~~a~~~g~~~~v~~p~~~ 84 (244)
T cd00640 63 IALAAAAARLGLKCTIVMPEGA 84 (244)
T ss_pred HHHHHHHHHcCCCEEEEECCCC
Confidence 3688899999999999998754
No 90
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=23.99 E-value=44 Score=23.77 Aligned_cols=23 Identities=9% Similarity=-0.201 Sum_probs=18.3
Q ss_pred chHhhhhccCCCcEEEECccCcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
++.|.+|++.++||.+++-....
T Consensus 214 ~~ea~lA~~~gi~~~~i~~Vsd~ 236 (272)
T PRK08202 214 VPEVIVARHCGLKVLGISCITNL 236 (272)
T ss_pred HHHHHHHHHCCCcEEEEEEEecc
Confidence 56789999999999998654443
No 91
>PRK08638 threonine dehydratase; Validated
Probab=23.94 E-value=49 Score=24.14 Aligned_cols=21 Identities=10% Similarity=-0.140 Sum_probs=18.1
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
..+|.+|+..|+|++++.+.-
T Consensus 88 ~alA~~aa~~G~~~~iv~p~~ 108 (333)
T PRK08638 88 QGVALSCALLGIDGKVVMPKG 108 (333)
T ss_pred HHHHHHHHHcCCCEEEEeCCC
Confidence 368999999999999998853
No 92
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=23.83 E-value=50 Score=22.84 Aligned_cols=18 Identities=6% Similarity=-0.152 Sum_probs=16.1
Q ss_pred chHhhhhccCCCcEEEEC
Q psy2576 2 PCLGSNLCSPVYQVIVLA 19 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a 19 (80)
++++.+|+.+++|+.++.
T Consensus 184 aAl~~va~~~gip~~~i~ 201 (233)
T PRK13374 184 AGLYGLAAYLGAEALAIL 201 (233)
T ss_pred HHHHHHHHHcCCCEEEEE
Confidence 578999999999999885
No 93
>PRK07048 serine/threonine dehydratase; Validated
Probab=23.82 E-value=46 Score=23.83 Aligned_cols=21 Identities=5% Similarity=-0.040 Sum_probs=18.0
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
.++|.+|+..|+|+.|+.+..
T Consensus 85 ~alA~~a~~~G~~~~vvvp~~ 105 (321)
T PRK07048 85 QAIALSARLLGIPATIVMPQD 105 (321)
T ss_pred HHHHHHHHHcCCCEEEEECCC
Confidence 368999999999999998853
No 94
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=23.36 E-value=51 Score=23.76 Aligned_cols=20 Identities=5% Similarity=-0.086 Sum_probs=17.8
Q ss_pred hHhhhhccCCCcEEEECccC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~ 22 (80)
.+|.+|+.+|+|++|+.+..
T Consensus 65 alA~~a~~~G~~~~iv~p~~ 84 (316)
T cd06448 65 AAAYAARKLGVPCTIVVPES 84 (316)
T ss_pred HHHHHHHHcCCCEEEEECCC
Confidence 68899999999999999874
No 95
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=23.32 E-value=52 Score=23.09 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.6
Q ss_pred hHhhhhccCCCcEEEECccC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~ 22 (80)
++|.+|+.+|+|+.|+.+..
T Consensus 67 alA~~a~~~G~~~~i~vp~~ 86 (291)
T cd01561 67 GLAMVAAAKGYRFIIVMPET 86 (291)
T ss_pred HHHHHHHHcCCeEEEEECCC
Confidence 68899999999999998864
No 96
>PRK08813 threonine dehydratase; Provisional
Probab=23.19 E-value=51 Score=24.51 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=18.0
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
.++|.+|+..|+|+.|+.+.-
T Consensus 94 ~alA~aa~~~Gi~~~IvvP~~ 114 (349)
T PRK08813 94 QGVAWSAYRLGVQAITVMPHG 114 (349)
T ss_pred HHHHHHHHHcCCCEEEEEcCC
Confidence 468999999999999988753
No 97
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=22.86 E-value=51 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=18.2
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
..+|.+|+.+|+|++++.+..
T Consensus 72 ~alA~~a~~~G~~~~i~~p~~ 92 (290)
T TIGR01138 72 IALAMIAALKGYRMKLLMPDN 92 (290)
T ss_pred HHHHHHHHHcCCeEEEEECCC
Confidence 368899999999999999864
No 98
>COG2362 DppA D-aminopeptidase [Amino acid transport and metabolism]
Probab=22.82 E-value=60 Score=23.70 Aligned_cols=22 Identities=5% Similarity=-0.283 Sum_probs=18.2
Q ss_pred hhhhccCCCcEEEECccCcccC
Q psy2576 5 GSNLCSPVYQVIVLAPLYKLSP 26 (80)
Q Consensus 5 A~~Ak~~~vPv~V~a~~~K~~~ 26 (80)
|++|-+.||||.+++|..-+.+
T Consensus 139 a~laG~ygVPV~~~sGDd~~~~ 160 (274)
T COG2362 139 AYLAGEYGVPVALVSGDDVAAR 160 (274)
T ss_pred HHHhhccCCcEEEeeCcHHHhh
Confidence 6788899999999999875544
No 99
>PRK06110 hypothetical protein; Provisional
Probab=22.69 E-value=51 Score=23.71 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=17.8
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
..+|.+|+.+|+|+.|+.+.-
T Consensus 83 ~alA~~a~~~G~~~~ivvp~~ 103 (322)
T PRK06110 83 QSVAFAARRHGLAATIVVPHG 103 (322)
T ss_pred HHHHHHHHHcCCCEEEEEcCC
Confidence 368999999999999998753
No 100
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=22.17 E-value=56 Score=23.01 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=36.1
Q ss_pred ccCCCcEEEECccCcccCcCCCCCCCcccccccCCccccccccccc--cCceeeeccc
Q psy2576 9 CSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDL--VSKVQVFNPE 64 (80)
Q Consensus 9 k~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~~--~~~~~v~nP~ 64 (80)
...+-|++|+--++.+=...|. +--.+..+|++.|.......+. -+++.+||..
T Consensus 93 ~~~aSPilV~d~~h~~fg~~PT--gViTlhtFRt~~Ea~~l~~kE~l~f~SVsiW~ek 148 (215)
T PF07368_consen 93 PPPASPILVCDFTHSYFGDGPT--GVITLHTFRTPKEAIELCAKETLPFDSVSIWNEK 148 (215)
T ss_pred CCCCCCEEEcCCCHHHcCCCCC--eEEEEEccCCHHHHHHHHhcCCCCcceEEEeCcH
Confidence 4566789988766666666676 6667788899888876544332 1456666653
No 101
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=22.13 E-value=55 Score=23.14 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.9
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
..+|.+|+.+|+|+.|+.+..
T Consensus 71 ~alA~~a~~~G~~~~i~vp~~ 91 (299)
T TIGR01136 71 IALAMVAAAKGYKLILTMPET 91 (299)
T ss_pred HHHHHHHHHcCCcEEEEECCC
Confidence 368899999999999998764
No 102
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=22.12 E-value=60 Score=23.40 Aligned_cols=21 Identities=5% Similarity=-0.061 Sum_probs=17.9
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
..+|.+|+..|.|++|+.+..
T Consensus 80 ~alA~~a~~~G~~~~v~~p~~ 100 (317)
T TIGR02991 80 RALAYAAAEEGVRATICMSEL 100 (317)
T ss_pred HHHHHHHHHhCCCEEEEcCCC
Confidence 468999999999999988753
No 103
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=22.05 E-value=49 Score=23.90 Aligned_cols=20 Identities=5% Similarity=-0.150 Sum_probs=17.8
Q ss_pred chHhhhhccCCCcEEEECcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPL 21 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~ 21 (80)
.++|.+|+..|+|++++.+.
T Consensus 85 ~alA~~a~~~G~~~~ivvp~ 104 (329)
T PRK14045 85 FVTGLAAKKLGLDAVLVLRG 104 (329)
T ss_pred HHHHHHHHHcCCeEEEEEeC
Confidence 47899999999999999884
No 104
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=21.96 E-value=55 Score=23.26 Aligned_cols=21 Identities=0% Similarity=0.007 Sum_probs=18.4
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
+++|.+|+..|+++.++.+..
T Consensus 67 ~alA~~a~~~G~~~~i~v~~~ 87 (307)
T cd06449 67 RQVAAVAAKLGLKCVLVQENW 87 (307)
T ss_pred HHHHHHHHHcCCeEEEEecCC
Confidence 468999999999999999864
No 105
>PLN00011 cysteine synthase
Probab=21.81 E-value=58 Score=23.50 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=17.8
Q ss_pred hHhhhhccCCCcEEEECccC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~ 22 (80)
.+|.+|+..|+|++++.+..
T Consensus 83 alA~~a~~~G~~~~ivvp~~ 102 (323)
T PLN00011 83 GLACIGAARGYKVILVMPST 102 (323)
T ss_pred HHHHHHHHcCCeEEEEeCCC
Confidence 57899999999999999865
No 106
>PF10450 POC1: POC1 chaperone; InterPro: IPR018855 This entry represents fungal proteosome chaperone 1, a chaperone of the 20S proteasome which functions in early 20S proteasome assembly [].
Probab=21.48 E-value=22 Score=25.85 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=13.0
Q ss_pred cceeecCCCCeeEEee
Q psy2576 63 PEYDYVPPELVSLFIS 78 (80)
Q Consensus 63 P~fD~tPpelIt~~IT 78 (80)
..-+..|||+||+|+.
T Consensus 182 ~~~~L~PPeFITG~~a 197 (273)
T PF10450_consen 182 SVPSLQPPEFITGFIA 197 (273)
T ss_pred CCcccCCccHhHhHHH
Confidence 4459999999999864
No 107
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=21.47 E-value=69 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=19.7
Q ss_pred chHhhhhccCCCcEEEECccCccc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
.++|.+|+..|++++|+.+..+.+
T Consensus 84 ~a~A~~a~~~g~~~~v~~p~~~~s 107 (328)
T TIGR00260 84 AAAAAYAGKAGVKVVILYPAGKIS 107 (328)
T ss_pred HHHHHHhccCCCcEEEEECCCCCC
Confidence 357888999999999999886444
No 108
>PRK06815 hypothetical protein; Provisional
Probab=21.44 E-value=56 Score=23.44 Aligned_cols=21 Identities=19% Similarity=-0.007 Sum_probs=18.0
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
.++|.+|+..|+|+.|+.+..
T Consensus 81 ~alA~~a~~~G~~~~i~~p~~ 101 (317)
T PRK06815 81 QGVALAAKLAGIPVTVYAPEQ 101 (317)
T ss_pred HHHHHHHHHhCCCEEEEECCC
Confidence 368899999999999998765
No 109
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=21.07 E-value=55 Score=23.21 Aligned_cols=20 Identities=0% Similarity=-0.168 Sum_probs=18.1
Q ss_pred chHhhhhccCCCcEEEECcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPL 21 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~ 21 (80)
+.+|.+|+..|.++.++.+.
T Consensus 71 ~alA~~a~~~G~~~~ivvp~ 90 (311)
T TIGR01275 71 RATALAAKKLGLDAVLVLRE 90 (311)
T ss_pred HHHHHHHHHhCCceEEEecC
Confidence 46899999999999999987
No 110
>PRK10646 ADP-binding protein; Provisional
Probab=20.99 E-value=65 Score=21.28 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=38.2
Q ss_pred hhccCCCcEEEECccCcccCcCCCCCCCc-----ccccccCCccccccccccc--cCceee-ecc--ceeecCCCCeeEE
Q psy2576 7 NLCSPVYQVIVLAPLYKLSPQFLCSYDQD-----TFNNFISPEKVLSYEHRDL--VSKVQV-FNP--EYDYVPPELVSLF 76 (80)
Q Consensus 7 ~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~-----~~~e~~~p~~vl~~~~~~~--~~~~~v-~nP--~fD~tPpelIt~~ 76 (80)
+||..|+.=.|-+|||.+...|+. +.. ++..+.+++|+....-.+. .+++.+ +=| .=++.|++.+..-
T Consensus 48 l~~~Lg~~~~V~SPTFtlv~~Y~~--~~~~l~H~DlYRL~~~~el~~lG~~e~~~~~~i~~IEW~e~~~~~lp~~~l~i~ 125 (153)
T PRK10646 48 FLQALGHQGNVKSPTYTLVEPYTL--DNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEWPQQGAGVLPDPDVEIH 125 (153)
T ss_pred HHHHcCCCCCCCCCCEeeEEEeeC--CCCCEEEEeeccCCCHHHHHHcchHHhhcCCCEEEEECCcchhhcCCcCcEEEE
Confidence 466778877789999999998864 321 2323345555433211110 122322 212 2367777777666
Q ss_pred ee
Q psy2576 77 IS 78 (80)
Q Consensus 77 IT 78 (80)
|+
T Consensus 126 i~ 127 (153)
T PRK10646 126 LD 127 (153)
T ss_pred EE
Confidence 54
No 111
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=20.75 E-value=58 Score=22.70 Aligned_cols=20 Identities=5% Similarity=-0.238 Sum_probs=17.0
Q ss_pred chHhhhhccCCCcEEEECcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPL 21 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~ 21 (80)
+++|.+|+++++|+.+++--
T Consensus 192 aa~a~lA~~~gv~~~~i~~V 211 (248)
T TIGR01697 192 VPEVIVARHCGIKVLAVSLI 211 (248)
T ss_pred HHHHHHHHHCCCcEEEEEEE
Confidence 57899999999999988643
No 112
>PHA02542 41 41 helicase; Provisional
Probab=20.47 E-value=46 Score=25.76 Aligned_cols=20 Identities=15% Similarity=-0.082 Sum_probs=16.2
Q ss_pred HhhhhccCCCcEEEECccCc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K 23 (80)
|=.+||+++|||++++-.-+
T Consensus 336 LK~lAkel~vpVi~lsQLnR 355 (473)
T PHA02542 336 LRGLAVEHDVVVWTAAQTTR 355 (473)
T ss_pred HHHHHHHhCCeEEEEEeeCc
Confidence 34579999999999996554
No 113
>KOG0388|consensus
Probab=20.46 E-value=40 Score=28.53 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=18.5
Q ss_pred chHhhhhccCCC--cEEEECccCcc
Q psy2576 2 PCLGSNLCSPVY--QVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~v--Pv~V~a~~~K~ 24 (80)
.-||-+|..|+| ||+|+++..++
T Consensus 605 svlAhLaE~~nIwGPFLVVtpaStL 629 (1185)
T KOG0388|consen 605 SVLAHLAETHNIWGPFLVVTPASTL 629 (1185)
T ss_pred HHHHHHHHhccCCCceEEeehHHHH
Confidence 457888889997 89999987653
No 114
>PRK07409 threonine synthase; Validated
Probab=20.31 E-value=69 Score=23.36 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=19.1
Q ss_pred chHhhhhccCCCcEEEECccCcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
+.+|.+|+..|+|+.++.+..+.
T Consensus 91 ~alA~~a~~~G~~~~ivvP~~~~ 113 (353)
T PRK07409 91 ASAAAYAARAGLKAFVLIPEGKI 113 (353)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCC
Confidence 46889999999999999887543
No 115
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.17 E-value=71 Score=17.19 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=7.9
Q ss_pred cCCCCeeEEeeC
Q psy2576 68 VPPELVSLFISN 79 (80)
Q Consensus 68 tPpelIt~~ITe 79 (80)
+|++.|+.+|+|
T Consensus 34 ~p~~~v~V~i~e 45 (60)
T PRK02289 34 APKEAIHVFIND 45 (60)
T ss_pred cCcceEEEEEEE
Confidence 366777777765
No 116
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=20.13 E-value=53 Score=23.23 Aligned_cols=31 Identities=6% Similarity=0.056 Sum_probs=22.4
Q ss_pred hhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccc
Q psy2576 6 SNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSY 49 (80)
Q Consensus 6 ~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~ 49 (80)
.+++++++|+++.+ +....-++|+|.++..+
T Consensus 160 ~L~rKYd~P~VISS-------------~A~s~~~lRsPRdl~aL 190 (216)
T PRK03892 160 QLVNKYKVPRFITS-------------SAESKWEVRGPRDLMSL 190 (216)
T ss_pred HHHHHcCCCEEEec-------------CcchhccCCCHHHHHHH
Confidence 36788999999776 44445567888887655
Done!