Query psy2576
Match_columns 80
No_of_seqs 117 out of 1010
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 19:42:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w2w_B 5-methylthioribose-1-ph 99.9 1.2E-26 4.2E-31 157.1 3.7 76 3-80 76-174 (191)
2 3a11_A Translation initiation 99.9 2E-25 6.8E-30 161.6 5.0 75 3-80 234-310 (338)
3 1t9k_A Probable methylthioribo 99.9 3.4E-25 1.2E-29 161.0 4.5 76 3-80 252-328 (347)
4 2yvk_A Methylthioribose-1-phos 99.9 4.9E-25 1.7E-29 161.5 4.3 76 3-80 277-353 (374)
5 1t5o_A EIF2BD, translation ini 99.9 8.3E-25 2.8E-29 159.1 4.1 75 3-80 249-324 (351)
6 2a0u_A Initiation factor 2B; S 99.9 1.5E-24 5.2E-29 159.2 5.3 76 3-80 281-362 (383)
7 3ecs_A Translation initiation 99.9 1.4E-23 4.8E-28 151.0 4.7 74 3-80 214-288 (315)
8 1vb5_A Translation initiation 99.8 2.8E-21 9.4E-26 136.4 4.8 65 3-80 202-266 (276)
9 3cwc_A Putative glycerate kina 74.3 0.93 3.2E-05 33.2 0.9 23 3-25 310-332 (383)
10 3b79_A Toxin secretion ATP-bin 69.1 1 3.6E-05 26.6 0.1 15 2-16 10-24 (129)
11 3zua_A CLD, alpha-hemolysin tr 61.6 1.8 6E-05 26.3 0.1 15 2-16 17-31 (142)
12 1to6_A Glycerate kinase; glyce 52.2 5.5 0.00019 29.0 1.4 22 3-25 301-322 (371)
13 3k8u_A Putative ABC transporte 49.9 3.6 0.00012 25.3 0.1 14 2-15 20-33 (156)
14 1hi9_A Dciaa, dipeptide transp 44.0 4.5 0.00015 28.3 -0.2 24 4-27 137-160 (274)
15 2z5b_A Protein YPL144W, DMP1; 42.7 4.9 0.00017 25.9 -0.1 15 6-20 106-120 (151)
16 3eei_A 5-methylthioadenosine n 39.6 12 0.0004 24.3 1.4 23 2-24 180-202 (233)
17 3jx9_A Putative phosphoheptose 37.3 11 0.00036 24.4 0.9 23 3-25 95-118 (170)
18 3o4v_A MTA/SAH nucleosidase; m 34.7 11 0.00039 24.4 0.7 24 2-25 178-201 (234)
19 4g41_A MTA/SAH nucleosidase; m 34.3 16 0.00055 23.6 1.4 23 2-24 181-203 (236)
20 3nm6_B MTA/SAH nucleosidase; h 33.9 12 0.00041 24.2 0.7 24 2-25 177-200 (230)
21 3dp9_A MTA/SAH nucleosidase; v 33.4 12 0.00042 24.2 0.7 24 2-25 177-200 (231)
22 4g4s_O Proteasome chaperone 1; 32.0 6.2 0.00021 27.8 -1.0 17 62-78 182-198 (276)
23 3bzy_B ESCU; auto cleavage pro 32.0 13 0.00045 21.3 0.6 10 7-16 35-44 (83)
24 3bsf_A AT4G34840, nucleosidase 30.9 20 0.00067 23.8 1.4 24 2-25 191-214 (254)
25 1zos_A 5'-methylthioadenosine 30.5 20 0.00069 22.9 1.4 22 2-23 176-197 (230)
26 2h8g_A 5'-methylthioadenosine 30.4 20 0.00069 24.0 1.4 23 2-24 204-226 (267)
27 1z34_A Purine nucleoside phosp 27.3 24 0.00083 22.9 1.3 22 2-23 183-204 (235)
28 3bl6_A 5'-methylthioadenosine 25.7 20 0.00068 23.0 0.7 22 2-23 177-198 (230)
29 1odk_A Purine nucleoside phosp 25.2 20 0.00069 23.3 0.6 21 2-22 183-203 (235)
30 1cb0_A Protein (5'-deoxy-5'-me 25.0 25 0.00085 23.9 1.1 23 2-24 199-221 (283)
31 3b1s_B Flagellar biosynthetic 30.5 16 0.00054 21.2 0.0 10 7-16 35-44 (87)
32 1je0_A MTAP;, 5'-methylthioade 23.6 23 0.00077 23.0 0.6 23 2-24 184-206 (236)
33 2vt1_B Surface presentation of 23.4 23 0.0008 20.7 0.6 10 7-16 35-44 (93)
34 3uaw_A PNP, purine nucleoside 23.0 21 0.00072 23.4 0.4 21 2-22 183-203 (235)
35 3ozb_A Methylthioadenosine pho 22.5 31 0.0011 23.4 1.2 22 2-23 202-223 (259)
36 1ybf_A AMP nucleosidase; struc 22.4 31 0.001 23.1 1.1 20 2-21 189-208 (268)
37 3t7y_A YOP proteins translocat 22.3 17 0.0006 21.4 -0.1 10 7-16 50-59 (97)
38 1wta_A 5'-methylthioadenosine 21.6 32 0.0011 23.4 1.1 21 2-22 198-218 (275)
39 3c01_E Surface presentation of 21.6 18 0.00063 21.4 -0.1 11 7-17 35-45 (98)
40 3imk_A Putative molybdenum car 21.6 33 0.0011 22.2 1.1 13 7-19 95-107 (158)
41 3u40_A Pnpase, purine nucleosi 21.5 23 0.0008 23.4 0.4 22 2-23 191-212 (242)
42 2b94_A Purine nucleoside phosp 21.0 24 0.00083 23.6 0.4 23 2-24 209-231 (267)
43 3bh0_A DNAB-like replicative h 20.4 64 0.0022 21.8 2.5 21 4-24 213-233 (315)
No 1
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=99.92 E-value=1.2e-26 Score=157.10 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=68.1
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCccccccccc-----------------------cccCcee
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHR-----------------------DLVSKVQ 59 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~-----------------------~~~~~~~ 59 (80)
.+|++||+|+|||||+||+|||++.+++ +++..+|+|+|+|++.+.+. ...++++
T Consensus 76 ~~Al~Ak~~~vPf~V~a~~~k~~~~~~~--g~~i~iE~r~~~ev~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 153 (191)
T 1w2w_B 76 QLAVICKQFGIKFFVVAPKTTIDNVTET--GDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVGIAPLEIN 153 (191)
T ss_dssp HHHHHHHHHTCEEEEECCGGGBCSSCCS--GGGCCCCBCCTHHHHEEEEEEBCTTTCCBCBCTTSCBCEEEEECSCTTCE
T ss_pred HHHHHHHHcCCCEEEecccceeeeccCC--cceeecccCCHHHhccccCccccccccccccccccccccccccccCCCcc
Confidence 4799999999999999999999999999 88899999999999876431 1247899
Q ss_pred eeccceeecCCCCeeEEeeCC
Q psy2576 60 VFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 60 v~nP~fD~tPpelIt~~ITe~ 80 (80)
++||+||+|||+|||+||||.
T Consensus 154 v~Np~fDvTP~~lIt~iITE~ 174 (191)
T 1w2w_B 154 VWNPAFDITPHELIDGIITEE 174 (191)
T ss_dssp ECCBSEEEECGGGCSEEEETT
T ss_pred ccccccccCCHHHcCEEEecC
Confidence 999999999999999999985
No 2
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=99.91 E-value=2e-25 Score=161.60 Aligned_cols=75 Identities=21% Similarity=0.353 Sum_probs=68.6
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-c-cCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-L-VSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~-~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+||+|||++.++. +++..+|+|+|+|++.+ +.. . +++++++||+||||||+|||+||||.
T Consensus 234 ~lAl~Ak~~~vPfyV~a~~~k~d~~~~~--g~~i~iE~r~~~ev~~~-g~~~~w~~~v~v~NPaFDvTP~~lIt~iITE~ 310 (338)
T 3a11_A 234 LIALTAKEHRVWTMIAAETYKFHPETML--GQLVEIEMRDPTEVIPE-DELKTWPKNIEVWNPAFDVTPPEYVDVIITER 310 (338)
T ss_dssp HHHHHHHHTTCEEEEECCGGGBCSCCSS--SSCCCCCBCCGGGTSCH-HHHTTSCTTEEECCBSEEEECGGGCSEEEETT
T ss_pred HHHHHHHHcCCCEEEecccceecccCCC--CcccccccCCHHHcccc-cccccCCCCceecCcceeccCHHHcCEEecCC
Confidence 4799999999999999999999999999 99999999999999987 322 2 47899999999999999999999985
No 3
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=99.91 E-value=3.4e-25 Score=160.97 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=69.6
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+||+|||++.++. +++..+|+|+|+|++.+.+.. .+++++++||+||||||+|||+||||.
T Consensus 252 ~lAl~Ak~~~vPfyV~ap~~k~d~~~~~--g~~i~iE~r~~~ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt~iITE~ 328 (347)
T 1t9k_A 252 SLAVLAKRNNIPFYVAAPVSTIDPTIRS--GEEIPIEERRPEEVTHCGGNRIAPEGVKVLNPAFDVTENTLITAIITEK 328 (347)
T ss_dssp HHHHHHHHTTCCEEEECCGGGEETTCSS--GGGSCCCBCCTHHHHEETTEECSCTTCEECCBSEEEECGGGCSEEEETT
T ss_pred HHHHHHHHcCCCEEEecccceeccccCC--ccccccccCChHhccccCCeeccCCCccccCcccccCCHHHCCEEeccC
Confidence 4799999999999999999999999999 899999999999999886532 357899999999999999999999985
No 4
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=99.90 E-value=4.9e-25 Score=161.47 Aligned_cols=76 Identities=28% Similarity=0.331 Sum_probs=69.5
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+||+|||++.++. +.+..+|+|+|+|++.+.+.. .+++++++||+||||||+|||+||||.
T Consensus 277 ~lAl~Ak~~~vPfyV~ap~~k~d~~~~~--g~~i~iEer~~~Ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt~iITE~ 353 (374)
T 2yvk_A 277 GLAILANAFDIPFFVAAPLSTFDTKVKC--GADIPIEERDPEEVRQISGVRTAPSNVPVFNPAFDITPHDLISGIITEK 353 (374)
T ss_dssp HHHHHHHHTTCCEEEECCGGGEETTCSS--GGGSCCCBCCTHHHHEETTEECSCTTCCBCCBSEEEECGGGCSEEEETT
T ss_pred HHHHHHHHcCCCEEEecccceeCccCCC--ccccccccCCHHHhcccCCceecCCCcceeCcceeccCHHHCCEEeccC
Confidence 4799999999999999999999999999 889999999999999886533 357899999999999999999999985
No 5
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=99.90 E-value=8.3e-25 Score=159.13 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=68.3
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccccccc-ccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRD-LVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~-~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+||+|||++. +. ++++.+|+|+|+|++.+.+.. .+++++++||+||||||+|||+||||.
T Consensus 249 ~lAl~Ak~~~vPfyV~a~~~k~d~~-~~--g~~i~iEer~~~ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt~iITE~ 324 (351)
T 1t5o_A 249 TVSVVAKHHNIPFYVAAPKATFDWE-RT--AKDVVIEERPREELIFCGKRQIAPLNVKVYNPAFDPTPLENVTALITEY 324 (351)
T ss_dssp HHHHHHHHTTCCEEEECCGGGBCTT-CC--GGGCCCCBCCTHHHHEETTEECSCTTCEECCBSEEEEEGGGCSEEEETT
T ss_pred HHHHHHHHcCCCEEEeCccceeccc-cC--CCccccccCCHHHhcccCCeeecCCCcceeCccccCCCHHHCCEEEeCC
Confidence 4799999999999999999999999 88 888999999999999886533 357899999999999999999999985
No 6
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=99.90 E-value=1.5e-24 Score=159.24 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=68.5
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCcccccc--cccc-ccCc--eeeeccceeecCCCCee-EE
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSY--EHRD-LVSK--VQVFNPEYDYVPPELVS-LF 76 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~--~~~~-~~~~--~~v~nP~fD~tPpelIt-~~ 76 (80)
.+|++||+|+|||||+||+|||++.++. ++++.+|+|+|+|++.+ .+.. .+++ ++++||+||||||+||| +|
T Consensus 281 ~lAl~Ak~~~vPfyV~ap~~k~d~~~~~--g~~i~iEer~~~Ev~~~~~~g~~~a~~~~~v~v~NPaFDvTP~~lIt~~i 358 (383)
T 2a0u_A 281 NLAVSAKFHGVKLYVAAPTTTLDVKTAS--GNHVEIEEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPSELITGGI 358 (383)
T ss_dssp HHHHHHHHTTCCEEEECCGGGBCTTCCS--GGGSCCCBCCTHHHHBCTTTCCBCSCCCTTEEECCBSEEEECGGGCCSEE
T ss_pred HHHHHHHHcCCCEEEeCCcceecCcCCC--ccccccccCCHHHhcccccCCceecCCCCceeeecccccccChHHCCcEE
Confidence 4799999999999999999999999999 99999999999999987 3422 2466 99999999999999999 99
Q ss_pred eeCC
Q psy2576 77 ISNT 80 (80)
Q Consensus 77 ITe~ 80 (80)
|||.
T Consensus 359 ITE~ 362 (383)
T 2a0u_A 359 ITEK 362 (383)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9985
No 7
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=99.88 E-value=1.4e-23 Score=150.98 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=56.7
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcc-cccccCCccccccccccccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDT-FNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~-~~e~~~p~~vl~~~~~~~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
.+|++||+|+|||||+||+|||++.+|. ++.. .+|+|++++++.+.+ .+++++++||+||||||+|||+||||.
T Consensus 214 ~iAl~Ak~~~vP~~V~a~~~K~~~~~~~--~~~~i~~e~~~~~ev~~~~~--~~~~v~v~NP~fDvTP~~lIt~iITe~ 288 (315)
T 3ecs_A 214 QMAVCAKAQNKPFYVVAESFKFVRLFPL--NQQDVPDKFKYKADTLKVAQ--TGQDLKEEHPWVDYTAPSLITLLFTDL 288 (315)
T ss_dssp HHHHHHHHTTCCEEEECCGGGBCSCCCS--SGGGSCGGGTC---------------CCBCCCSEEEECGGGCSEEEETT
T ss_pred HHHHHHHHhCCCEEEEeccccccccCCC--CcccCCccccChhhcccccc--CCCcCcCCCCCccCCCHHHcCEEEcCC
Confidence 4789999999999999999999999998 7665 689999999987653 246899999999999999999999985
No 8
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.83 E-value=2.8e-21 Score=136.40 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=60.3
Q ss_pred hHhhhhccCCCcEEEECccCcccCcCCCCCCCcccccccCCccccccccccccCceeeeccceeecCCCCeeEEeeCC
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVSLFISNT 80 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~~~~e~~~p~~vl~~~~~~~~~~~~v~nP~fD~tPpelIt~~ITe~ 80 (80)
-+|++||+|++||||+|++|||++. +. +++..+|+|+|+| ++++++||.||+|||+|||+||||.
T Consensus 202 ~iA~~A~~~~vp~~V~a~~~K~~~~-~~--~~~i~iE~r~~~e----------~~v~v~np~fD~tP~~lI~~iITe~ 266 (276)
T 1vb5_A 202 LLALACHENAIPFYVAAETYKFHPT-LK--SGDVMLMERDLIR----------GNVRIRNVLFDVTPWKYVRGIITEL 266 (276)
T ss_dssp HHHHHHHHTTCCEEEECCGGGBCSS-CC--GGGCCCCBCCCEE----------TTEECCCBCEEEECGGGCSEEEETT
T ss_pred HHHHHHHHcCCCEEEeccccccCcc-cC--ccccccccCCccc----------cCccccCCCeEecCHHHCCEEEeCC
Confidence 4789999999999999999999999 77 8888999999987 4689999999999999999999984
No 9
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=74.35 E-value=0.93 Score=33.21 Aligned_cols=23 Identities=13% Similarity=-0.119 Sum_probs=18.7
Q ss_pred hHhhhhccCCCcEEEECccCccc
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
.+|-+||+++|||+++|++-...
T Consensus 310 gVa~~A~~~~vPviaiaG~~~~~ 332 (383)
T 3cwc_A 310 GVANIAKRYNKPVIGIAGSLTAD 332 (383)
T ss_dssp HHHHHHHHTTCCEEEEEEECC--
T ss_pred HHHHHHHHhCCCEEEEeCCCCCC
Confidence 46788999999999999987644
No 10
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=69.08 E-value=1 Score=26.57 Aligned_cols=15 Identities=7% Similarity=-0.489 Sum_probs=13.4
Q ss_pred chHhhhhccCCCcEE
Q psy2576 2 PCLGSNLCSPVYQVI 16 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~ 16 (80)
+||+++|++||+|+=
T Consensus 10 a~L~~i~~~~g~~~~ 24 (129)
T 3b79_A 10 NSLIYVSRYYGLANS 24 (129)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhCCCCC
Confidence 699999999999874
No 11
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=61.61 E-value=1.8 Score=26.29 Aligned_cols=15 Identities=13% Similarity=-0.292 Sum_probs=12.8
Q ss_pred chHhhhhccCCCcEE
Q psy2576 2 PCLGSNLCSPVYQVI 16 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~ 16 (80)
+||+++|++||+++=
T Consensus 17 acLa~i~~~~g~~~s 31 (142)
T 3zua_A 17 YALEILAQYHNVSVN 31 (142)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 699999999998763
No 12
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=52.16 E-value=5.5 Score=29.02 Aligned_cols=22 Identities=5% Similarity=-0.105 Sum_probs=18.0
Q ss_pred hHhhhhccCCCcEEEECccCccc
Q psy2576 3 CLGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
.+|-.||+ ++||+++|++-...
T Consensus 301 gVa~~A~~-~~PviaiaG~~~~~ 322 (371)
T 1to6_A 301 GVAKRTPV-GVPVVAICGSLVED 322 (371)
T ss_dssp HHHTTSCT-TCCEEEEESEECTT
T ss_pred HHHHHHhc-CCCEEEEeCCCCCC
Confidence 46778999 99999999987543
No 13
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=49.91 E-value=3.6 Score=25.25 Aligned_cols=14 Identities=14% Similarity=-0.190 Sum_probs=12.3
Q ss_pred chHhhhhccCCCcE
Q psy2576 2 PCLGSNLCSPVYQV 15 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv 15 (80)
+|||++|+++|+++
T Consensus 20 acLa~i~~~~g~~~ 33 (156)
T 3k8u_A 20 AVLASVAKHYGSNY 33 (156)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 69999999999885
No 14
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=43.96 E-value=4.5 Score=28.29 Aligned_cols=24 Identities=8% Similarity=-0.160 Sum_probs=20.8
Q ss_pred HhhhhccCCCcEEEECccCcccCc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKLSPQ 27 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~~~~ 27 (80)
-|.+|-++||||..++|.-+++..
T Consensus 137 na~~Ag~~gVPV~lvsGDd~~~~e 160 (274)
T 1hi9_A 137 NAYVAGYYDVPVLMVAGDDRAAKE 160 (274)
T ss_dssp HHHHHHHTTCCEEEEEEEHHHHHH
T ss_pred HHHHHhhcCCCEEEEecCHHHHHH
Confidence 467899999999999999988764
No 15
>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A
Probab=42.71 E-value=4.9 Score=25.90 Aligned_cols=15 Identities=7% Similarity=-0.434 Sum_probs=13.1
Q ss_pred hhhccCCCcEEEECc
Q psy2576 6 SNLCSPVYQVIVLAP 20 (80)
Q Consensus 6 ~~Ak~~~vPv~V~a~ 20 (80)
++||+.+.|+||-+.
T Consensus 106 iLarR~~~P~YVg~S 120 (151)
T 2z5b_A 106 IISERFNRPCYVTWS 120 (151)
T ss_dssp HHHHHHTSCEEEEEE
T ss_pred HHHHHhCCCeEEEee
Confidence 679999999999874
No 16
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=39.57 E-value=12 Score=24.30 Aligned_cols=23 Identities=0% Similarity=0.046 Sum_probs=18.6
Q ss_pred chHhhhhccCCCcEEEECccCcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
+++|.+|+++++|+.++......
T Consensus 180 aa~a~~a~~~gip~~~ir~IsD~ 202 (233)
T 3eei_A 180 AAIAQTCHQLETPFVIIRAVSDS 202 (233)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEEEEecC
Confidence 46888999999999998755444
No 17
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=37.34 E-value=11 Score=24.37 Aligned_cols=23 Identities=0% Similarity=-0.298 Sum_probs=18.7
Q ss_pred hHhhhhccCCCcEEEECc-cCccc
Q psy2576 3 CLGSNLCSPVYQVIVLAP-LYKLS 25 (80)
Q Consensus 3 ~~A~~Ak~~~vPv~V~a~-~~K~~ 25 (80)
-+|..||+.|+||++++. .||=+
T Consensus 95 e~A~~ake~G~~vIaITs~~~~~~ 118 (170)
T 3jx9_A 95 ASLARYDAWHTPYSIITLGDVTET 118 (170)
T ss_dssp HHHHHHHHHTCCEEEEESSCCCTT
T ss_pred HHHHHHHHCCCcEEEEeCcchhcc
Confidence 368889999999999998 55533
No 18
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A*
Probab=34.73 E-value=11 Score=24.41 Aligned_cols=24 Identities=4% Similarity=0.067 Sum_probs=19.2
Q ss_pred chHhhhhccCCCcEEEECccCccc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
+++|.+|+++++|+.++.......
T Consensus 178 aa~a~va~~~~ip~~~ir~ISD~a 201 (234)
T 3o4v_A 178 TAIAHVCHNFNVPFVVVRAISDVA 201 (234)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEECS
T ss_pred HHHHHHHHHhCCCEEEEEEEecCC
Confidence 468889999999999988655543
No 19
>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes}
Probab=34.30 E-value=16 Score=23.63 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=18.5
Q ss_pred chHhhhhccCCCcEEEECccCcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
+.++.+|+.+++|++++..-...
T Consensus 181 aa~~~va~~~~~p~~~Ir~ISD~ 203 (236)
T 4g41_A 181 AAIAQAAHTAGKPFIVVRAMSDT 203 (236)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSC
T ss_pred HHHHHHHHHcCCCEEEEEEEEeC
Confidence 46788999999999999765443
No 20
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A*
Probab=33.87 E-value=12 Score=24.18 Aligned_cols=24 Identities=8% Similarity=-0.121 Sum_probs=18.9
Q ss_pred chHhhhhccCCCcEEEECccCccc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
++++.+|+++++|+.++.......
T Consensus 177 aa~a~~a~~~gi~~~~ir~IsD~a 200 (230)
T 3nm6_B 177 ASVAFVCQKFGVPCCVLRSISDNA 200 (230)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEECS
T ss_pred HHHHHHHHHcCCCEEEEEEEecCC
Confidence 468889999999999987555443
No 21
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1
Probab=33.40 E-value=12 Score=24.19 Aligned_cols=24 Identities=4% Similarity=0.112 Sum_probs=19.1
Q ss_pred chHhhhhccCCCcEEEECccCccc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
+++|.+|+++++|+.++.......
T Consensus 177 aa~a~~a~~~~ip~~~ir~ISD~a 200 (231)
T 3dp9_A 177 SAIAQTCHQFKVPFVVVRAISDVA 200 (231)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEECS
T ss_pred HHHHHHHHHcCCCEEEEEEEecCC
Confidence 468899999999999987655543
No 22
>4g4s_O Proteasome chaperone 1; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}
Probab=32.00 E-value=6.2 Score=27.77 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=13.2
Q ss_pred ccceeecCCCCeeEEee
Q psy2576 62 NPEYDYVPPELVSLFIS 78 (80)
Q Consensus 62 nP~fD~tPpelIt~~IT 78 (80)
+-.-|..||++||+++.
T Consensus 182 ~~~p~L~PP~fITG~~a 198 (276)
T 4g4s_O 182 ENECTLQPPEFITGFIG 198 (276)
T ss_dssp SSCCCCCTTCCBCSHHH
T ss_pred cCCCCcCCcchhhhHHH
Confidence 34458999999998764
No 23
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=31.98 E-value=13 Score=21.27 Aligned_cols=10 Identities=20% Similarity=-0.290 Sum_probs=8.8
Q ss_pred hhccCCCcEE
Q psy2576 7 NLCSPVYQVI 16 (80)
Q Consensus 7 ~Ak~~~vPv~ 16 (80)
.|++||||++
T Consensus 35 ~A~e~~VPi~ 44 (83)
T 3bzy_B 35 LAELYDIPVI 44 (83)
T ss_dssp HHHHTTCCEE
T ss_pred HHHHcCCCEE
Confidence 5889999998
No 24
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana}
Probab=30.90 E-value=20 Score=23.76 Aligned_cols=24 Identities=4% Similarity=-0.070 Sum_probs=18.6
Q ss_pred chHhhhhccCCCcEEEECccCccc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKLS 25 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~~ 25 (80)
+.++.+|+++++|+.++.......
T Consensus 191 aa~a~va~~~~ip~~~Ir~ISD~a 214 (254)
T 3bsf_A 191 AAVAYVADIFKVPTILIKGVTDIV 214 (254)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEEEEEEcC
Confidence 467889999999999887654433
No 25
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A*
Probab=30.50 E-value=20 Score=22.93 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=17.5
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
+.++.+|+++++|+.++.....
T Consensus 176 aa~~~~a~~~~~~~~~ir~IsD 197 (230)
T 1zos_A 176 AAIAQAAHTLNLPVLVIRAMSD 197 (230)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEecc
Confidence 4678899999999998876433
No 26
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A*
Probab=30.35 E-value=20 Score=24.05 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=18.1
Q ss_pred chHhhhhccCCCcEEEECccCcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
+++|.+|+++++|+.++......
T Consensus 204 aa~a~va~~~gip~~~Ir~ISD~ 226 (267)
T 2h8g_A 204 AAVAYVADLLKIPVVFLKAVTDL 226 (267)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEEEC
Confidence 46788999999999988765433
No 27
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A*
Probab=27.29 E-value=24 Score=22.87 Aligned_cols=22 Identities=5% Similarity=-0.292 Sum_probs=17.8
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
++++.+|+++++|+.++.....
T Consensus 183 aa~~~~a~~~gi~~~~i~~IsD 204 (235)
T 1z34_A 183 AGLFPIADLYGARAGCICTVSD 204 (235)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHHHHHHhCCcEEEEEEEEe
Confidence 4678899999999999886543
No 28
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus}
Probab=25.69 E-value=20 Score=22.97 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=17.6
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
+.++.+|+++++|+.++.....
T Consensus 177 a~~~~~a~~~~~~~~~ir~IsD 198 (230)
T 3bl6_A 177 TAIAQTCYQFNVPFVVVRAVSD 198 (230)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEecc
Confidence 4678899999999999886543
No 29
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A
Probab=25.22 E-value=20 Score=23.27 Aligned_cols=21 Identities=5% Similarity=-0.311 Sum_probs=17.4
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
++++.+|+++++|+.++....
T Consensus 183 aa~~~~a~~~gip~~~ir~Is 203 (235)
T 1odk_A 183 SALFLLGRMRGVRTGAILAVS 203 (235)
T ss_dssp HHHHHHHHHHTCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEe
Confidence 467889999999999988653
No 30
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A
Probab=25.01 E-value=25 Score=23.88 Aligned_cols=23 Identities=4% Similarity=-0.396 Sum_probs=18.5
Q ss_pred chHhhhhccCCCcEEEECccCcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
+.+|.+|+++++||.++.-....
T Consensus 199 aa~a~vA~~~gi~~~~i~~VSd~ 221 (283)
T 1cb0_A 199 VPEVVLAKEAGICYASIAMATDY 221 (283)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEEEEEcc
Confidence 46789999999999988765444
No 31
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=30.45 E-value=16 Score=21.19 Aligned_cols=10 Identities=10% Similarity=-0.150 Sum_probs=8.7
Q ss_pred hhccCCCcEE
Q psy2576 7 NLCSPVYQVI 16 (80)
Q Consensus 7 ~Ak~~~vPv~ 16 (80)
.|++||||++
T Consensus 35 ~A~e~~VPi~ 44 (87)
T 3b1s_B 35 IAENYSIPVV 44 (87)
Confidence 5889999998
No 32
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A
Probab=23.59 E-value=23 Score=23.00 Aligned_cols=23 Identities=4% Similarity=-0.181 Sum_probs=18.4
Q ss_pred chHhhhhccCCCcEEEECccCcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
++++.+|+++++|+.++......
T Consensus 184 aa~~~~a~~~gi~~~~ir~IsD~ 206 (236)
T 1je0_A 184 ATLFTLSKVKGWKSATVLVVSDN 206 (236)
T ss_dssp HHHHHHHHHHTCEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCcEEEEEEEEcc
Confidence 46788999999999998866443
No 33
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=23.37 E-value=23 Score=20.73 Aligned_cols=10 Identities=0% Similarity=-0.233 Sum_probs=8.7
Q ss_pred hhccCCCcEE
Q psy2576 7 NLCSPVYQVI 16 (80)
Q Consensus 7 ~Ak~~~vPv~ 16 (80)
.|+++|||++
T Consensus 35 ~A~e~gVPi~ 44 (93)
T 2vt1_B 35 YANEVGIPTV 44 (93)
T ss_dssp HHHHTTCCEE
T ss_pred HHHHcCCCEE
Confidence 5889999998
No 34
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* 4d8y_A 4d8x_A 4d8v_A 4d98_A 4d9h_A* 4da0_A* 4da6_A* 4da7_A* 4da8_A* 4dab_A* 4dae_A* 4dan_A* 4dao_A* 4dar_A*
Probab=22.95 E-value=21 Score=23.45 Aligned_cols=21 Identities=5% Similarity=-0.089 Sum_probs=17.2
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
++++.+|+++|+|+.++....
T Consensus 183 aa~~~va~~~gi~~~~i~~IS 203 (235)
T 3uaw_A 183 TALYTLAAKYGVNALSVLTVS 203 (235)
T ss_dssp HHHHHHHHHHTCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEe
Confidence 468899999999999887443
No 35
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=22.52 E-value=31 Score=23.44 Aligned_cols=22 Identities=9% Similarity=-0.218 Sum_probs=18.0
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
+.+|.+|++.++|+.+++-...
T Consensus 202 ~~ea~vA~~~gi~~~~I~~ISD 223 (259)
T 3ozb_A 202 MPEAALARELDLPYACLALVVN 223 (259)
T ss_dssp TTHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEEEe
Confidence 4688999999999999875443
No 36
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1
Probab=22.43 E-value=31 Score=23.14 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=17.1
Q ss_pred chHhhhhccCCCcEEEECcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPL 21 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~ 21 (80)
++++.+|+++++|+.++...
T Consensus 189 aal~~~a~~~gv~~~~i~~V 208 (268)
T 1ybf_A 189 ATLMTVGFANKIPMGALLLI 208 (268)
T ss_dssp HHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEE
Confidence 46888999999999988765
No 37
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=22.33 E-value=17 Score=21.43 Aligned_cols=10 Identities=0% Similarity=-0.174 Sum_probs=8.7
Q ss_pred hhccCCCcEE
Q psy2576 7 NLCSPVYQVI 16 (80)
Q Consensus 7 ~Ak~~~vPv~ 16 (80)
.|++||||++
T Consensus 50 ~A~e~gVPi~ 59 (97)
T 3t7y_A 50 EAEKYGVPIM 59 (97)
T ss_dssp HHHHHTCCEE
T ss_pred HHHHcCCeEE
Confidence 5889999998
No 38
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix}
Probab=21.65 E-value=32 Score=23.43 Aligned_cols=21 Identities=14% Similarity=-0.083 Sum_probs=17.5
Q ss_pred chHhhhhccCCCcEEEECccC
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLY 22 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~ 22 (80)
+.+|.+|+++++||.+++-..
T Consensus 198 a~ea~vA~~~gi~~~~i~~Vs 218 (275)
T 1wta_A 198 VPEINLACEAQLCYATLAMVT 218 (275)
T ss_dssp HHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHCCCCEEEEEEEE
Confidence 467899999999999887553
No 39
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=21.64 E-value=18 Score=21.36 Aligned_cols=11 Identities=27% Similarity=-0.031 Sum_probs=9.0
Q ss_pred hhccCCCcEEE
Q psy2576 7 NLCSPVYQVIV 17 (80)
Q Consensus 7 ~Ak~~~vPv~V 17 (80)
.|++||||++=
T Consensus 35 ~A~e~gVPi~e 45 (98)
T 3c01_E 35 YAEKVGVPVIV 45 (98)
T ss_dssp HHHHHTCCEEE
T ss_pred HHHHcCCCeec
Confidence 58899999983
No 40
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=21.60 E-value=33 Score=22.18 Aligned_cols=13 Identities=0% Similarity=-0.276 Sum_probs=10.8
Q ss_pred hhccCCCcEEEEC
Q psy2576 7 NLCSPVYQVIVLA 19 (80)
Q Consensus 7 ~Ak~~~vPv~V~a 19 (80)
.|++|++|++++-
T Consensus 95 ~a~~~~KP~l~i~ 107 (158)
T 3imk_A 95 FAEQYKKPCLHID 107 (158)
T ss_dssp HHHHTTCCEEEEE
T ss_pred HHHHhCCCEEEEe
Confidence 5889999999753
No 41
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A*
Probab=21.48 E-value=23 Score=23.44 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=18.1
Q ss_pred chHhhhhccCCCcEEEECccCc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYK 23 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K 23 (80)
++++.+|+++|+|+.++.....
T Consensus 191 aal~~va~~~gi~~~~i~~ISD 212 (242)
T 3u40_A 191 AALYMIAARARKQALCMLTISD 212 (242)
T ss_dssp HHHHHHHHHHTCEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEEc
Confidence 4688999999999998875544
No 42
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A*
Probab=20.99 E-value=24 Score=23.60 Aligned_cols=23 Identities=4% Similarity=-0.367 Sum_probs=18.5
Q ss_pred chHhhhhccCCCcEEEECccCcc
Q psy2576 2 PCLGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 2 ~~~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
++++.+|+.+++|+.++......
T Consensus 209 aa~a~va~~~gip~~~Ir~IsD~ 231 (267)
T 2b94_A 209 ATLMVMGTLRKVKTGGIFIVDGC 231 (267)
T ss_dssp HHHHHHHHHHTCEEEEEEEEEEC
T ss_pred HHHHHHHHHcCCcEEEEEEEEcc
Confidence 46788999999999998866443
No 43
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=20.43 E-value=64 Score=21.84 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=17.1
Q ss_pred HhhhhccCCCcEEEECccCcc
Q psy2576 4 LGSNLCSPVYQVIVLAPLYKL 24 (80)
Q Consensus 4 ~A~~Ak~~~vPv~V~a~~~K~ 24 (80)
|--+||++++||++++...+=
T Consensus 213 Lk~lAk~~~i~vi~lsql~r~ 233 (315)
T 3bh0_A 213 LKKMARELDVVVIALSQLSRQ 233 (315)
T ss_dssp HHHHHHHHTCEEEEEECCCGG
T ss_pred HHHHHHHhCCeEEEEeecCcc
Confidence 445789999999999987654
Done!