RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2576
         (80 letters)



>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
           isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
          Length = 340

 Score = 53.6 bits (128), Expect = 9e-11
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 14  QVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSK-VQVFNPEYDYVPPEL 72
              V AP+  + P       ++       PE+V       +  + V+V NP +D     L
Sbjct: 259 PFYVAAPVSTIDPT--IRSGEEIPIEERRPEEVTHCGGNRIAPEGVKVLNPAFDVTENTL 316

Query: 73  VSLFISN 79
           ++  I+ 
Sbjct: 317 ITAIITE 323


>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 340

 Score = 49.8 bits (118), Expect = 2e-09
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 14  QVIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVS-KVQVFNPEYDYVPPEL 72
              V AP      +       D        E+++    R +    V+V+NP +D  P E 
Sbjct: 259 PFYVAAPKATFDWERTAK---DVVIEERPREELIFCGKRQIAPLNVKVYNPAFDPTPLEN 315

Query: 73  VSLFISN 79
           V+  I+ 
Sbjct: 316 VTALITE 322


>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
           [TaxId: 5664]}
          Length = 374

 Score = 48.6 bits (115), Expect = 5e-09
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 15  VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDL-----VSKVQVFNPEYDYVP 69
           + V AP   L  +   +           P ++ +              + ++NP +D  P
Sbjct: 284 LYVAAPTTTLDVK--TASGNHVEIEEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITP 341

Query: 70  PELVS-LFISN 79
            EL++   I+ 
Sbjct: 342 SELITGGIITE 352


>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein
           PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 274

 Score = 47.7 bits (113), Expect = 1e-08
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 13/65 (20%)

Query: 15  VIVLAPLYKLSPQFLCSYDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYVPPELVS 74
             V A  YK  P              +    V+  E   +   V++ N  +D  P + V 
Sbjct: 213 FYVAAETYKFHPT-------------LKSGDVMLMERDLIRGNVRIRNVLFDVTPWKYVR 259

Query: 75  LFISN 79
             I+ 
Sbjct: 260 GIITE 264


>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
           isomerase Ypr118W {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 402

 Score = 42.1 bits (98), Expect = 9e-07
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 21/86 (24%)

Query: 15  VIVLAPLYKLSPQFLCSYD---------------------QDTFNNFISPEKVLSYEHRD 53
             V+AP   +        D                     ++         + ++ +   
Sbjct: 299 FFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVGI 358

Query: 54  LVSKVQVFNPEYDYVPPELVSLFISN 79
              ++ V+NP +D  P EL+   I+ 
Sbjct: 359 APLEINVWNPAFDITPHELIDGIITE 384


>d1bcoa1 b.48.1.1 (A:481-560) mu transposase, C-terminal domain
          {Bacteriophage mu [TaxId: 10677]}
          Length = 80

 Score = 23.2 bits (50), Expect = 2.9
 Identities = 6/37 (16%), Positives = 15/37 (40%)

Query: 32 YDQDTFNNFISPEKVLSYEHRDLVSKVQVFNPEYDYV 68
          Y      N    + V+ ++ + L S V  +  +  ++
Sbjct: 38 YYNMALMNAGVKKVVVRFDPQQLHSTVYCYTLDGRFI 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 300,513
Number of extensions: 11871
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 9
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)