BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy258
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WEY|A Chain A, Solution Structure Of Rrm Domain In Calcipressin 1
Length = 104
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 82 KEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141
+ + E+L + K +FQY KSF+R+R+N+ + +AA AR+ LH++ F ++ +YF Q
Sbjct: 24 RAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83
Query: 142 MTPFDSADQHLQPPAPTKQFLISPPSS 168
+ HL PP P K S PSS
Sbjct: 84 L---HIGSSHLAPPNPDK----SGPSS 103
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 26/99 (26%)
Query: 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKS 97
PK L ++N+ P F+D L++ + QFGK +E + ++ G K
Sbjct: 29 PKRLHVSNI-PFRFRDPDLRQ----MFGQFGKILD------------VEIIFNERG-SKG 70
Query: 98 FQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINV 136
F + V +E+SA A +AR LH +V KI V
Sbjct: 71 FGF--------VTFENSADADRAREKLHGTVVEGRKIEV 101
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 26/99 (26%)
Query: 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKS 97
PK L ++N+ P F+D L++ + QFGK +E + ++ G K
Sbjct: 15 PKRLHVSNI-PFRFRDPDLRQ----MFGQFGKIL------------DVEIIFNERG-SKG 56
Query: 98 FQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINV 136
F + V +E+SA A +AR LH +V KI V
Sbjct: 57 FGF--------VTFENSADADRAREKLHGTVVEGRKIEV 87
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 39 KSLIITNLNPDLFKDD---ALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKP 95
+SLI +LN +LF A+ +Q + + F K + Y+KND +K++ G
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA----GNL 590
Query: 96 KSFQYLKSFRRMRV 109
FQ ++S + R+
Sbjct: 591 LEFQGIRSEQLNRL 604
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 39 KSLIITNLNPDLFKDD---ALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKP 95
+SLI +LN +LF A+ +Q + + F K + Y+KND +K++ G
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA----GNL 593
Query: 96 KSFQYLKSFRRMRV 109
FQ ++S + R+
Sbjct: 594 LEFQGIRSEQLNRL 607
>pdb|1CBG|A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase
From White Clover (Trifolium Repens L.), A Family 1
Glycosyl-Hydrolase
Length = 490
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 24/121 (19%)
Query: 54 DALKEQIETLLSQF------GK-PKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRR 106
DA K ++ +L F G+ P+S +YL + L +F +S + SF
Sbjct: 269 DAAKRGLDFMLGWFMHPLTKGRYPESMRYL--------VRKRLPKFSTEESKELTGSFDF 320
Query: 107 MRVNYESSAAAAKA-RI-NLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLIS 164
+ +NY SS AAKA RI N ++ S IN F P L P A + I
Sbjct: 321 LGLNYYSSYYAAKAPRIPNARPAIQTDSLINATFEHNGKP-------LGPMAASSWLCIY 373
Query: 165 P 165
P
Sbjct: 374 P 374
>pdb|3SIU|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Monomeric Form
pdb|3SIU|E Chain E, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Monomeric Form
pdb|3SIV|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|E Chain E, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|H Chain H, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|K Chain K, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
Length = 254
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 13 NAIDNLKDTGDMGDSLDDLINDEQLPKSLIITN 45
NA+D ++ ++G+SLD N+E L + I+TN
Sbjct: 52 NALDYIRTVKELGNSLDKCKNNENLQQ--ILTN 82
>pdb|2OZB|B Chain B, Structure Of A Human Prp31-15.5k-U4 Snrna Complex
pdb|2OZB|E Chain E, Structure Of A Human Prp31-15.5k-U4 Snrna Complex
Length = 260
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 13 NAIDNLKDTGDMGDSLDDLINDEQLPKSLIITN 45
NA+D ++ ++G+SLD N+E L + I+TN
Sbjct: 58 NALDYIRTVKELGNSLDKCKNNENLQQ--ILTN 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,203,319
Number of Sequences: 62578
Number of extensions: 287825
Number of successful extensions: 660
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 18
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)