Query psy258
Match_columns 238
No_of_seqs 148 out of 229
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 19:46:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4019|consensus 100.0 2.1E-47 4.5E-52 326.2 13.8 181 31-237 3-193 (193)
2 PF04847 Calcipressin: Calcipr 100.0 9.8E-47 2.1E-51 324.5 6.4 146 91-236 18-184 (184)
3 KOG4206|consensus 99.7 1.2E-17 2.7E-22 147.1 7.3 122 36-181 6-145 (221)
4 PF13893 RRM_5: RNA recognitio 98.5 6.9E-07 1.5E-11 61.5 7.0 52 88-139 4-56 (56)
5 PF00076 RRM_1: RNA recognitio 98.2 3.3E-06 7.2E-11 58.6 5.4 65 41-135 1-70 (70)
6 PLN03134 glycine-rich RNA-bind 97.9 7.3E-05 1.6E-09 62.0 9.3 99 13-141 5-113 (144)
7 TIGR01659 sex-lethal sex-letha 97.9 1.9E-05 4.2E-10 74.2 6.5 73 39-141 108-186 (346)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 97.9 4.7E-05 1E-09 69.3 8.7 72 40-141 271-348 (352)
9 smart00362 RRM_2 RNA recogniti 97.9 6.8E-05 1.5E-09 50.6 7.4 67 40-136 1-71 (72)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 97.9 4.4E-05 9.6E-10 69.5 7.8 75 38-142 3-83 (352)
11 cd00590 RRM RRM (RNA recogniti 97.8 0.00011 2.5E-09 49.8 7.7 69 40-138 1-74 (74)
12 KOG0114|consensus 97.8 0.0001 2.2E-09 59.6 7.9 72 40-141 20-94 (124)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.8 0.00011 2.3E-09 71.4 8.8 73 39-141 276-350 (481)
14 KOG0148|consensus 97.8 7.8E-05 1.7E-09 68.6 7.2 86 26-141 151-237 (321)
15 COG0724 RNA-binding proteins ( 97.7 9.1E-05 2E-09 61.3 6.9 80 38-141 115-194 (306)
16 PF14259 RRM_6: RNA recognitio 97.7 0.00011 2.3E-09 51.9 6.0 65 41-135 1-70 (70)
17 KOG0125|consensus 97.6 0.00033 7.2E-09 65.9 9.6 79 35-141 93-173 (376)
18 TIGR01622 SF-CC1 splicing fact 97.6 0.0002 4.4E-09 67.8 8.3 74 38-141 186-265 (457)
19 TIGR01628 PABP-1234 polyadenyl 97.6 0.0002 4.3E-09 70.1 8.4 72 40-141 2-79 (562)
20 TIGR01642 U2AF_lg U2 snRNP aux 97.5 0.00033 7.3E-09 67.1 8.5 74 38-141 295-374 (509)
21 TIGR01628 PABP-1234 polyadenyl 97.5 0.00034 7.5E-09 68.4 8.7 74 38-141 285-363 (562)
22 TIGR01648 hnRNP-R-Q heterogene 97.5 0.00029 6.3E-09 70.6 8.3 72 39-142 234-307 (578)
23 TIGR01642 U2AF_lg U2 snRNP aux 97.5 0.0004 8.6E-09 66.6 8.8 80 37-141 407-501 (509)
24 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.5 0.00039 8.4E-09 67.5 8.5 73 39-141 3-77 (481)
25 smart00360 RRM RNA recognition 97.4 0.00069 1.5E-08 45.4 6.9 46 91-136 19-70 (71)
26 PLN03120 nucleic acid binding 97.4 0.00089 1.9E-08 61.2 8.7 73 38-141 4-79 (260)
27 TIGR01659 sex-lethal sex-letha 97.3 0.00098 2.1E-08 62.8 8.7 74 38-141 193-274 (346)
28 KOG0109|consensus 97.3 0.00044 9.6E-09 64.3 5.9 53 85-139 95-147 (346)
29 smart00361 RRM_1 RNA recogniti 97.2 0.0021 4.5E-08 46.4 7.0 54 83-136 7-69 (70)
30 KOG0148|consensus 97.1 0.0015 3.4E-08 60.2 7.2 102 35-141 3-141 (321)
31 PF11608 Limkain-b1: Limkain b 97.1 0.0031 6.7E-08 49.1 7.6 72 39-140 3-75 (90)
32 TIGR01645 half-pint poly-U bin 97.1 0.0009 2E-08 67.6 5.9 75 36-140 105-185 (612)
33 KOG0122|consensus 97.0 0.0024 5.3E-08 58.1 7.8 74 38-141 189-268 (270)
34 TIGR01645 half-pint poly-U bin 97.0 0.005 1.1E-07 62.3 10.2 74 38-141 204-283 (612)
35 TIGR01622 SF-CC1 splicing fact 96.8 0.0043 9.3E-08 58.8 7.9 58 84-141 388-447 (457)
36 PLN03121 nucleic acid binding 96.7 0.0058 1.3E-07 55.4 7.1 70 39-139 6-78 (243)
37 KOG0107|consensus 96.6 0.01 2.2E-07 51.9 7.8 76 36-141 8-84 (195)
38 KOG1190|consensus 96.5 0.01 2.2E-07 57.6 8.1 74 39-141 298-372 (492)
39 PF04059 RRM_2: RNA recognitio 96.5 0.014 2.9E-07 46.1 7.3 74 39-141 2-86 (97)
40 KOG0117|consensus 96.4 0.012 2.7E-07 57.4 7.9 74 39-144 260-333 (506)
41 KOG1457|consensus 96.3 0.014 3E-07 53.0 7.4 77 38-145 34-121 (284)
42 KOG0110|consensus 96.3 0.016 3.4E-07 59.2 8.5 86 35-141 512-597 (725)
43 KOG1190|consensus 96.3 0.0045 9.8E-08 59.9 4.4 82 35-141 144-227 (492)
44 KOG4660|consensus 96.3 0.0058 1.3E-07 60.7 4.9 80 30-139 66-147 (549)
45 TIGR01648 hnRNP-R-Q heterogene 96.2 0.014 3.1E-07 58.7 7.7 72 37-138 57-134 (578)
46 KOG0130|consensus 96.2 0.012 2.6E-07 49.8 5.9 78 40-141 74-151 (170)
47 KOG0105|consensus 96.1 0.01 2.2E-07 52.5 5.3 127 39-196 7-172 (241)
48 PLN03213 repressor of silencin 96.0 0.023 5E-07 56.5 7.7 75 39-141 11-87 (759)
49 KOG0415|consensus 96.0 0.0066 1.4E-07 58.1 3.9 83 39-145 240-322 (479)
50 KOG0533|consensus 96.0 0.022 4.8E-07 51.7 7.1 76 38-141 83-161 (243)
51 KOG0153|consensus 95.8 0.021 4.5E-07 54.3 6.2 73 39-141 229-302 (377)
52 KOG4207|consensus 95.7 0.023 5E-07 51.0 5.7 73 39-141 14-92 (256)
53 KOG0132|consensus 95.5 0.044 9.5E-07 56.7 7.7 79 36-144 419-497 (894)
54 KOG0123|consensus 95.3 0.033 7.1E-07 53.1 5.8 70 38-134 76-145 (369)
55 PF08952 DUF1866: Domain of un 95.2 0.073 1.6E-06 45.0 6.8 70 40-138 29-103 (146)
56 KOG4212|consensus 94.9 0.06 1.3E-06 52.9 6.3 71 39-138 537-607 (608)
57 KOG0111|consensus 94.7 0.049 1.1E-06 49.5 4.8 79 39-141 11-89 (298)
58 KOG0108|consensus 94.6 0.085 1.8E-06 51.6 6.6 79 39-141 19-97 (435)
59 KOG0123|consensus 94.4 0.062 1.4E-06 51.2 5.1 40 103-142 36-75 (369)
60 KOG0145|consensus 94.2 0.17 3.7E-06 47.0 7.2 77 38-144 41-123 (360)
61 KOG0110|consensus 94.2 0.084 1.8E-06 54.1 5.7 76 39-144 614-695 (725)
62 KOG1456|consensus 93.7 0.28 6.1E-06 47.5 7.9 106 7-141 89-198 (494)
63 KOG0131|consensus 93.4 0.12 2.6E-06 45.5 4.4 72 39-140 10-87 (203)
64 KOG0151|consensus 93.3 0.41 8.9E-06 49.5 8.8 75 39-143 175-258 (877)
65 KOG0144|consensus 93.0 0.24 5.1E-06 48.6 6.2 52 90-141 56-116 (510)
66 KOG0131|consensus 92.9 0.34 7.3E-06 42.8 6.5 80 38-141 96-176 (203)
67 KOG0127|consensus 92.8 0.27 5.8E-06 49.6 6.4 80 37-141 291-377 (678)
68 KOG0147|consensus 92.7 0.36 7.8E-06 48.3 7.2 62 79-140 464-526 (549)
69 KOG0127|consensus 92.5 0.49 1.1E-05 47.7 7.8 78 36-143 114-197 (678)
70 KOG0121|consensus 92.2 0.39 8.4E-06 40.4 5.8 71 38-138 36-112 (153)
71 KOG4206|consensus 90.6 1.1 2.4E-05 40.3 7.3 71 40-140 148-220 (221)
72 KOG0117|consensus 90.5 1.2 2.7E-05 43.9 8.1 72 40-141 85-163 (506)
73 KOG0149|consensus 90.4 0.25 5.5E-06 44.9 3.2 73 39-136 13-85 (247)
74 KOG0113|consensus 90.2 0.84 1.8E-05 43.0 6.5 77 39-139 102-178 (335)
75 KOG0109|consensus 89.5 0.74 1.6E-05 43.3 5.5 104 38-182 2-105 (346)
76 KOG0144|consensus 88.9 0.84 1.8E-05 44.9 5.6 63 82-144 138-208 (510)
77 KOG4212|consensus 88.7 1 2.2E-05 44.6 6.0 36 101-136 83-118 (608)
78 KOG1855|consensus 87.9 0.65 1.4E-05 45.6 4.2 71 35-126 227-308 (484)
79 KOG0145|consensus 87.5 2.7 5.8E-05 39.3 7.7 71 40-140 280-356 (360)
80 PF14605 Nup35_RRM_2: Nup53/35 86.5 2.3 5E-05 29.5 5.3 31 91-121 23-53 (53)
81 PF15023 DUF4523: Protein of u 86.3 4 8.7E-05 35.0 7.5 50 89-140 111-160 (166)
82 KOG0120|consensus 85.3 2.6 5.6E-05 42.2 6.9 58 81-138 422-489 (500)
83 COG5175 MOT2 Transcriptional r 85.1 2.4 5.2E-05 40.8 6.3 76 39-141 115-202 (480)
84 KOG1457|consensus 84.8 0.82 1.8E-05 41.7 2.9 63 40-130 212-274 (284)
85 KOG0106|consensus 81.2 1.3 2.9E-05 39.6 2.8 66 72-139 103-168 (216)
86 KOG1548|consensus 80.4 3.2 7E-05 39.8 5.2 85 39-143 135-222 (382)
87 KOG1996|consensus 80.3 4.7 0.0001 38.2 6.1 54 85-138 303-363 (378)
88 KOG0126|consensus 79.5 0.24 5.1E-06 43.9 -2.4 70 39-138 36-111 (219)
89 KOG4574|consensus 79.3 1.7 3.7E-05 45.9 3.2 57 85-141 315-373 (1007)
90 KOG1456|consensus 79.2 8.6 0.00019 37.6 7.7 51 91-141 311-362 (494)
91 KOG0106|consensus 79.0 3 6.5E-05 37.4 4.3 48 91-140 24-71 (216)
92 PF08777 RRM_3: RNA binding mo 78.2 3.6 7.8E-05 32.5 4.1 46 82-127 15-60 (105)
93 KOG4661|consensus 78.1 4.6 0.0001 41.4 5.7 77 38-141 405-484 (940)
94 KOG2416|consensus 76.9 2.7 5.8E-05 43.0 3.7 75 37-141 443-521 (718)
95 KOG0147|consensus 76.8 3.5 7.6E-05 41.5 4.5 75 41-139 281-355 (549)
96 KOG4208|consensus 76.5 9.4 0.0002 34.3 6.6 102 39-176 50-158 (214)
97 KOG0116|consensus 74.3 7.4 0.00016 38.1 5.9 73 36-135 286-360 (419)
98 KOG0112|consensus 72.1 6.5 0.00014 41.9 5.2 59 85-143 472-532 (975)
99 KOG1548|consensus 68.4 16 0.00035 35.2 6.6 56 80-135 288-345 (382)
100 KOG3152|consensus 66.9 4.8 0.0001 37.3 2.7 80 40-133 76-157 (278)
101 PF10309 DUF2414: Protein of u 66.7 30 0.00065 25.2 6.3 59 37-124 4-62 (62)
102 PF05172 Nup35_RRM: Nup53/35/4 65.2 19 0.00041 28.5 5.4 28 105-133 55-82 (100)
103 KOG0124|consensus 64.5 10 0.00022 37.1 4.4 51 79-133 128-184 (544)
104 PRK06646 DNA polymerase III su 63.8 7.5 0.00016 32.9 3.1 40 101-141 106-145 (154)
105 cd02325 R3H R3H domain. The na 62.7 40 0.00087 22.0 6.5 54 56-111 4-58 (59)
106 KOG0146|consensus 61.5 11 0.00025 35.4 4.1 35 107-141 330-364 (371)
107 KOG0146|consensus 60.9 30 0.00064 32.7 6.7 53 89-141 40-100 (371)
108 KOG2202|consensus 59.3 15 0.00032 34.0 4.3 59 83-141 84-147 (260)
109 KOG0124|consensus 58.7 22 0.00049 34.8 5.7 55 80-134 463-527 (544)
110 KOG4454|consensus 56.4 12 0.00025 34.3 3.1 69 39-138 10-83 (267)
111 PF03467 Smg4_UPF3: Smg-4/UPF3 54.1 4.7 0.0001 34.6 0.3 31 103-133 54-84 (176)
112 KOG4483|consensus 41.7 61 0.0013 32.1 5.7 66 28-123 381-446 (528)
113 KOG2314|consensus 41.5 56 0.0012 33.6 5.6 65 40-130 60-131 (698)
114 PRK15420 fucU L-fucose mutarot 36.6 42 0.00091 28.1 3.3 19 180-198 6-24 (140)
115 PF11767 SET_assoc: Histone ly 36.0 46 0.001 24.4 3.1 30 106-135 35-64 (66)
116 KOG4410|consensus 35.1 49 0.0011 31.5 3.8 51 39-118 331-381 (396)
117 KOG4660|consensus 35.0 24 0.00051 35.8 1.9 39 103-141 430-472 (549)
118 PF05025 RbsD_FucU: RbsD / Fuc 34.3 44 0.00095 27.8 3.1 19 180-198 4-22 (142)
119 KOG4676|consensus 33.5 53 0.0011 32.4 3.9 71 39-132 8-79 (479)
120 PRK11797 D-ribose pyranase; Pr 32.0 44 0.00095 27.8 2.7 20 180-199 4-23 (139)
121 KOG1995|consensus 31.7 39 0.00084 32.6 2.6 87 38-144 66-156 (351)
122 cd07268 Glo_EDI_BRP_like_4 Thi 29.3 1.3E+02 0.0028 25.7 5.1 63 107-176 5-76 (149)
123 KOG4209|consensus 28.6 2.9E+02 0.0064 24.8 7.6 50 91-141 124-179 (231)
124 PF04036 DUF372: Domain of unk 28.4 66 0.0014 21.5 2.5 26 60-87 11-37 (38)
125 KOG2068|consensus 25.3 27 0.00058 33.3 0.3 34 106-139 127-160 (327)
126 PF11823 DUF3343: Protein of u 21.5 1.2E+02 0.0026 21.8 3.2 26 104-129 1-26 (73)
127 PRK11700 hypothetical protein; 21.3 1.7E+02 0.0038 25.8 4.6 69 106-181 42-119 (187)
128 TIGR03636 L23_arch archaeal ri 21.2 1.3E+02 0.0029 22.6 3.4 29 93-121 43-71 (77)
No 1
>KOG4019|consensus
Probab=100.00 E-value=2.1e-47 Score=326.19 Aligned_cols=181 Identities=46% Similarity=0.792 Sum_probs=165.5
Q ss_pred ccCCCCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEE
Q psy258 31 LINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVN 110 (238)
Q Consensus 31 ~~~~~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVV 110 (238)
.|+..|||+|+++|++++.+|.....+..+++||+ +|++.+.|+.||+|||++|+
T Consensus 3 ~v~~~dlp~~~~~c~i~~~VF~~~~~k~~~~~lFr-------------------------q~n~~~~fq~lrsfrrvRi~ 57 (193)
T KOG4019|consen 3 EVDTDDLPTAIIACDIHEEVFVNREDKALFENLFR-------------------------QINEDATFQLLRSFRRVRIN 57 (193)
T ss_pred ccccccccceeeeecccHHhhccHHHHHHHHhHHh-------------------------hhCcchHHHHHHhhceeEEe
Confidence 45667999999999999999998889999999999 67999999999999999999
Q ss_pred eCCHHHHHHHHHHhcCCccCCc-ceEEEEeCCCCCCCCCCCccCCCCCCcceeeCCCCCCCCCCCCCCCCCCCCcHHHHH
Q psy258 111 YESSAAAAKARINLHQSVFASS-KINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLA 189 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~-~lrIyFAq~~t~~~~~~~~L~~P~~~K~FLISPP~SPP~gWe~~~E~~P~~~~DL~~ 189 (238)
|.+..+|+.||..+++..|.|+ .+++||+|..+... .++||++|.++||||||||+|||+||+++.|++|++|+||++
T Consensus 58 f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~~~-~~q~L~pP~~eKqFLISPPaSPPvgWe~~eda~P~~n~dLl~ 136 (193)
T KOG4019|consen 58 FSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHPES-NSQYLQPPEPEKQFLISPPASPPVGWEPIEDAPPVVNQDLLA 136 (193)
T ss_pred ccChhHHHHHHHHhhhcccCCCceEEEEEccCCCccc-cccccCCCChhhceeecCCCCCCCCCcccccCCccccHHHHH
Confidence 9999999999999999999998 89999999976643 339999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccccCCCCCCCCcEEEEecCCCCcC--------Ccc-cccccCCCCCC
Q psy258 190 AIASLTPGLSHELHAPSESQPGIVVHVCEDGAMV--------GTK-RIMQTACPPTK 237 (238)
Q Consensus 190 ala~L~~ge~~el~~~~~~~PsIvV~~ce~~~~~--------~~~-~i~~T~rPp~~ 237 (238)
|+++|++|++||||.+++.+|+||||.|++.... .++ +|+||+||..+
T Consensus 137 ~iq~~~~~e~~eLhn~~e~~P~ivvh~~~s~~e~~~~~~~~~~p~~~~~Qt~~p~~p 193 (193)
T KOG4019|consen 137 AIQKLGPGEKYELHNGTEKTPSIVVHVCESKIEAITEEEMPTNPKNKIMQTRRPEFP 193 (193)
T ss_pred HHHHhCccccccccCCCCCCCceEEEeccCccccccccccCCCCCCccccccCCCCC
Confidence 9999999999999999999999999999775221 234 89999999764
No 2
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=100.00 E-value=9.8e-47 Score=324.47 Aligned_cols=146 Identities=52% Similarity=0.809 Sum_probs=44.8
Q ss_pred hcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhc--CCccCCcceEEEEeCCCCC-CCCCCCccCCCCCCcceeeCCCC
Q psy258 91 QFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLH--QSVFASSKINVYFVQPMTP-FDSADQHLQPPAPTKQFLISPPS 167 (238)
Q Consensus 91 ~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~--~~~f~g~~lrIyFAq~~t~-~~~~~~~L~~P~~~K~FLISPP~ 167 (238)
+|+++++|++||+||||+|+|.+.++|++||+.|+ +..|+|+.+|+||++..+. .+..++||++|+++|+||||||+
T Consensus 18 ~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~~~~~~~~~L~~P~~~K~FLISPP~ 97 (184)
T PF04847_consen 18 TYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPIEDDSEKQYLEPPKPEKQFLISPPP 97 (184)
T ss_dssp TT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS------S--S---------------
T ss_pred hcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccccccccccccCCCCccceeeecCCC
Confidence 88999999999999999999999999999999999 8999999999999988443 24678999999999999999999
Q ss_pred CCCCCCCCCCCCCC---CCcHHHHHHHHhcCCCCccccCCCCCCCCcEEE-----EecCCCCc---------CCcc-ccc
Q psy258 168 SPPVGWEPRPESEP---LVNYDLLAAIASLTPGLSHELHAPSESQPGIVV-----HVCEDGAM---------VGTK-RIM 229 (238)
Q Consensus 168 SPP~gWe~~~E~~P---~~~~DL~~ala~L~~ge~~el~~~~~~~PsIvV-----~~ce~~~~---------~~~~-~i~ 229 (238)
|||+||++++|++| ++++||++||++|++|+++|+|.++.+.|+|+| |+|++... ...+ +|+
T Consensus 98 SPP~gWe~~~E~~PN~~~~~~DL~~aLa~L~~~e~~el~~~~~~~psi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (184)
T PF04847_consen 98 SPPVGWEPRCEDPPNKEVHAEDLAHALAKLGPGESSELHPGNESGPSIVVPAVDSEDCEDEIDEEEADMSPPPSPKPKIA 177 (184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCcccccCCCCcccChHHHHHHHHHhcccCccccccCCCCCCccceecccccccccCccccccccCCCCCCCCCcC
Confidence 99999999999999 689999999999999999999999999999999 88865511 1223 789
Q ss_pred ccCCCCC
Q psy258 230 QTACPPT 236 (238)
Q Consensus 230 ~T~rPp~ 236 (238)
||+|||+
T Consensus 178 ~T~rPp~ 184 (184)
T PF04847_consen 178 QTARPPV 184 (184)
T ss_dssp -------
T ss_pred cCCCcCC
Confidence 9999995
No 3
>KOG4206|consensus
Probab=99.71 E-value=1.2e-17 Score=147.13 Aligned_cols=122 Identities=24% Similarity=0.266 Sum_probs=96.7
Q ss_pred CCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258 36 QLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS 114 (238)
Q Consensus 36 ~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ 114 (238)
-.|+ ||||.|||++|-. ++|+++|+.||+|||+|+ .++.+..+|..|+++|+|.+.
T Consensus 6 ~~pn~TlYInnLnekI~~-~elkrsL~~LFsqfG~il----------------------dI~a~kt~KmRGQA~VvFk~~ 62 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKK-DELKRSLYLLFSQFGKIL----------------------DISAFKTPKMRGQAFVVFKET 62 (221)
T ss_pred cCCCceEeehhccccccH-HHHHHHHHHHHHhhCCeE----------------------EEEecCCCCccCceEEEecCh
Confidence 3466 9999999999999 899999999999999988 788888888899999999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCCCCCCCCC-CC-------------cc---CCCCCCcceeeCCCCCCCCCCCCCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQPMTPFDSA-DQ-------------HL---QPPAPTKQFLISPPSSPPVGWEPRP 177 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~~-~~-------------~L---~~P~~~K~FLISPP~SPP~gWe~~~ 177 (238)
++|..|++.|+|++|+|++|||+||++++.+... +. .- +.+.....|..++...=|+.+ ...
T Consensus 63 ~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~ 141 (221)
T KOG4206|consen 63 EAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQ 141 (221)
T ss_pred hHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-ccc
Confidence 9999999999999999999999999987764211 11 11 344456667766666555555 234
Q ss_pred CCCC
Q psy258 178 ESEP 181 (238)
Q Consensus 178 E~~P 181 (238)
..+|
T Consensus 142 ~~pp 145 (221)
T KOG4206|consen 142 MAPP 145 (221)
T ss_pred CCCC
Confidence 4455
No 4
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.47 E-value=6.9e-07 Score=61.49 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=46.5
Q ss_pred hhhhcCCceEEEecCCC-CeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 88 LLSQFGKPKSFQYLKSF-RRMRVNYESSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 88 ~~~~~~~iv~fv~LkSF-~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
+++.||++..+...+.- +.++|.|.+.++|..|...|++..|+|+.++|+||
T Consensus 4 ~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 4 LFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred HhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 44477888889988888 99999999999999999999999999999999996
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.20 E-value=3.3e-06 Score=58.65 Aligned_cols=65 Identities=34% Similarity=0.460 Sum_probs=50.3
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCCHH
Q psy258 41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYESSA 115 (238)
Q Consensus 41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~~e 115 (238)
|||.|||..+-. +.|+.+|++||+ +..+...+ +-+.++|.|.+.+
T Consensus 1 l~v~nlp~~~t~-----~~l~~~f~~~g~-------------------------i~~~~~~~~~~~~~~~~a~V~F~~~~ 50 (70)
T PF00076_consen 1 LYVGNLPPDVTE-----EELRDFFSQFGK-------------------------IESIKVMRNSSGKSKGYAFVEFESEE 50 (70)
T ss_dssp EEEESETTTSSH-----HHHHHHHHTTST-------------------------EEEEEEEEETTSSEEEEEEEEESSHH
T ss_pred cEEcCCCCcCCH-----HHHHHHHHHhhh-------------------------cccccccccccccccceEEEEEcCHH
Confidence 799999986555 466678886655 43444333 2367999999999
Q ss_pred HHHHHHHHhcCCccCCcceE
Q psy258 116 AAAKARINLHQSVFASSKIN 135 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lr 135 (238)
+|..|...+++..++|..+|
T Consensus 51 ~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 51 DAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHcCCCEECccCcC
Confidence 99999999999999987765
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.93 E-value=7.3e-05 Score=61.96 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=68.3
Q ss_pred eeccCCCCCCCCCC---CcccccCC-CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHh
Q psy258 13 NAIDNLKDTGDMGD---SLDDLIND-EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETL 88 (238)
Q Consensus 13 ~~~~~~~~~~~~~~---~~~~~~~~-~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~ 88 (238)
|+.+||=-+...+. ..+.+... ....++|||.||+..+=+ +.|+.+|++||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te-----~~L~~~F~~~G~------------------- 60 (144)
T PLN03134 5 NKLGGLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDD-----ASLRDAFAHFGD------------------- 60 (144)
T ss_pred hhhhhhhcccccCCCCCccccccccccCCCCEEEEeCCCCCCCH-----HHHHHHHhcCCC-------------------
Confidence 45555544443311 22333332 345679999999986533 456677886654
Q ss_pred hhhcCCceEEEec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 89 LSQFGKPKSFQYL------KSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 89 ~~~~~~iv~fv~L------kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+..+... ++.+=++|.|.+.++|+.|...|++..+.+..++|.++..
T Consensus 61 ------I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 61 ------VVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred ------eEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 4444443 3446699999999999999999999999999999999865
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.92 E-value=1.9e-05 Score=74.21 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=58.2
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
++|||.||+..+-+ +.|+++|++|| ++.++...+ +.+=++|.|.
T Consensus 108 ~~LfVgnLp~~~te-----~~L~~lF~~~G-------------------------~V~~v~i~~d~~tg~srGyaFVeF~ 157 (346)
T TIGR01659 108 TNLIVNYLPQDMTD-----RELYALFRTIG-------------------------PINTCRIMRDYKTGYSFGYAFVDFG 157 (346)
T ss_pred cEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CEEEEEEEecCCCCccCcEEEEEEc
Confidence 59999999986544 45677888554 454444432 3456999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..+.+++|+|.|+++
T Consensus 158 ~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 158 SEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred cHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 99999999999999999999999999876
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=97.92 E-value=4.7e-05 Score=69.31 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=57.2
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeCC
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYES 113 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~~ 113 (238)
+|+|.||+..+= .+.|+.+|++||+ +.....++ +.|=++|.|.+
T Consensus 271 ~lfV~NL~~~~~-----e~~L~~~F~~fG~-------------------------v~~v~i~~d~~t~~skG~aFV~F~~ 320 (352)
T TIGR01661 271 CIFVYNLSPDTD-----ETVLWQLFGPFGA-------------------------VQNVKIIRDLTTNQCKGYGFVSMTN 320 (352)
T ss_pred EEEEeCCCCCCC-----HHHHHHHHHhCCC-------------------------eEEEEEeEcCCCCCccceEEEEECC
Confidence 599999997642 3456688886655 44544443 34568999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.++|.+|+..|+|..|.|+.|+|.|+..
T Consensus 321 ~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 321 YDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 9999999999999999999999999765
No 9
>smart00362 RRM_2 RNA recognition motif.
Probab=97.91 E-value=6.8e-05 Score=50.64 Aligned_cols=67 Identities=30% Similarity=0.407 Sum_probs=50.0
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC----CCeEEEEeCCHH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS----FRRMRVNYESSA 115 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS----F~RiiVVF~~~e 115 (238)
||+|+||+..+-. +.|+.+|++| |.+..+...+. .+-++|.|.+.+
T Consensus 1 ~v~i~~l~~~~~~-----~~l~~~~~~~-------------------------g~v~~~~~~~~~~~~~~~~~v~f~~~~ 50 (72)
T smart00362 1 TLFVGNLPPDVTE-----EDLKELFSKF-------------------------GPIESVKIPKDTGKSKGFAFVEFESEE 50 (72)
T ss_pred CEEEcCCCCcCCH-----HHHHHHHHhc-------------------------CCEEEEEEecCCCCCCceEEEEeCCHH
Confidence 6899999875433 3555677755 44555555544 378999999999
Q ss_pred HHHHHHHHhcCCccCCcceEE
Q psy258 116 AAAKARINLHQSVFASSKINV 136 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lrI 136 (238)
.|.+|...+++..+.|..+++
T Consensus 51 ~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 51 DAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred HHHHHHHHhCCcEECCEEEee
Confidence 999999999998888876654
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=97.88 E-value=4.4e-05 Score=69.45 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=60.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
.++|||.|||..+-+ +.|+.+|++| |++.++..++ +.|=++|.|
T Consensus 3 ~~~l~V~nLp~~~~e-----~~l~~~F~~~-------------------------G~i~~v~i~~d~~~g~s~g~afV~f 52 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQ-----EEIRSLFTSI-------------------------GEIESCKLVRDKVTGQSLGYGFVNY 52 (352)
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHcc-------------------------CCEEEEEEEEcCCCCccceEEEEEE
Confidence 579999999987766 3566788855 5555555543 334599999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+.++|.+|...|++..+.|+.++|.|+++.
T Consensus 53 ~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 53 VRPEDAEKAVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred CcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence 9999999999999999999999999999873
No 11
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.85 E-value=0.00011 Score=49.81 Aligned_cols=69 Identities=29% Similarity=0.437 Sum_probs=52.3
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEEeCCH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVNYESS 114 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVVF~~~ 114 (238)
+|+|+||+..+-. +.++.+|++| |++..+...+. .+.++|.|.+.
T Consensus 1 ~i~i~~l~~~~~~-----~~i~~~~~~~-------------------------g~i~~~~~~~~~~~~~~~~~~v~f~s~ 50 (74)
T cd00590 1 TLFVGNLPPDVTE-----EDLRELFSKF-------------------------GKVESVRIVRDKDTKSKGFAFVEFEDE 50 (74)
T ss_pred CEEEeCCCCccCH-----HHHHHHHHhc-------------------------CCEEEEEEeeCCCCCcceEEEEEECCH
Confidence 5889999876332 4566666644 55555555543 67899999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEE
Q psy258 115 AAAAKARINLHQSVFASSKINVYF 138 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyF 138 (238)
+.|.+|...+++..+.|..+.+.+
T Consensus 51 ~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 51 EDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHHHHhCCCeECCeEEEEeC
Confidence 999999999999989988887754
No 12
>KOG0114|consensus
Probab=97.81 E-value=0.0001 Score=59.61 Aligned_cols=72 Identities=24% Similarity=0.247 Sum_probs=58.2
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---CCCeEEEEeCCHHH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---SFRRMRVNYESSAA 116 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---SF~RiiVVF~~~ea 116 (238)
-|||+|||-+|- ++++++||..| |.+.++..-- .-|-++|||+++..
T Consensus 20 iLyirNLp~~IT-----seemydlFGky-------------------------g~IrQIRiG~~k~TrGTAFVVYedi~d 69 (124)
T KOG0114|consen 20 ILYIRNLPFKIT-----SEEMYDLFGKY-------------------------GTIRQIRIGNTKETRGTAFVVYEDIFD 69 (124)
T ss_pred eEEEecCCcccc-----HHHHHHHhhcc-------------------------cceEEEEecCccCcCceEEEEehHhhh
Confidence 799999997654 46889999954 5566665543 45889999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+|.+.|.|+.+.+..+++-|-++
T Consensus 70 Ak~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 70 AKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred HHHHHHHhcccccCCceEEEEecCH
Confidence 9999999999999888888777554
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.76 E-value=0.00011 Score=71.37 Aligned_cols=73 Identities=12% Similarity=0.213 Sum_probs=59.5
Q ss_pred CcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-CCeEEEEeCCHHH
Q psy258 39 KSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-FRRMRVNYESSAA 116 (238)
Q Consensus 39 ~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-F~RiiVVF~~~ea 116 (238)
++|||.||+. .+=. +.|+.||++| |++..+..++. -+-++|.|.+.++
T Consensus 276 ~~l~v~nL~~~~vt~-----~~L~~lF~~y-------------------------G~V~~vki~~~~~g~afV~f~~~~~ 325 (481)
T TIGR01649 276 SVLMVSGLHQEKVNC-----DRLFNLFCVY-------------------------GNVERVKFMKNKKETALIEMADPYQ 325 (481)
T ss_pred CEEEEeCCCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEeCCCCEEEEEECCHHH
Confidence 4999999996 3422 4677888855 55666666654 3679999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+|...|++..+.|+.|+|.|++.
T Consensus 326 A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 326 AQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred HHHHHHHhCCCEECCceEEEEEccc
Confidence 9999999999999999999999876
No 14
>KOG0148|consensus
Probab=97.75 E-value=7.8e-05 Score=68.59 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=73.2
Q ss_pred CCcccccCCCCCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC
Q psy258 26 DSLDDLINDEQLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF 104 (238)
Q Consensus 26 ~~~~~~~~~~~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF 104 (238)
-++||..+.+.--| |+|+-|++. ... ++ .|+.+|+ .||+|.++..+|.-
T Consensus 151 ltfdeV~NQssp~NtsVY~G~I~~-~lt-e~---~mr~~Fs-------------------------~fG~I~EVRvFk~q 200 (321)
T KOG0148|consen 151 LTFDEVYNQSSPDNTSVYVGNIAS-GLT-ED---LMRQTFS-------------------------PFGPIQEVRVFKDQ 200 (321)
T ss_pred ccHHHHhccCCCCCceEEeCCcCc-ccc-HH---HHHHhcc-------------------------cCCcceEEEEeccc
Confidence 57889888765333 999999987 222 22 3466777 77899999999999
Q ss_pred CeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 105 RRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 105 ~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|=++|-|++.|+|+.|...+++..+.|...||++++.
T Consensus 201 GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 201 GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred ceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 9999999999999999999999999999999999987
No 15
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.74 E-value=9.1e-05 Score=61.26 Aligned_cols=80 Identities=26% Similarity=0.292 Sum_probs=61.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..||+|.||+..+- .+.|+.+|.+||.+. ...-...-..-++.|-++|.|.+.+.|
T Consensus 115 ~~~l~v~nL~~~~~-----~~~l~~~F~~~g~~~-------------------~~~~~~d~~~~~~~g~~~v~f~~~~~~ 170 (306)
T COG0724 115 NNTLFVGNLPYDVT-----EEDLRELFKKFGPVK-------------------RVRLVRDRETGKSRGFAFVEFESEESA 170 (306)
T ss_pred CceEEEeCCCCCCC-----HHHHHHHHHhcCcee-------------------EEEeeeccccCccCceEEEEecCHHHH
Confidence 57999999996444 357778999887763 111111113456778999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
..|...+++..|.|+.++|.+++.
T Consensus 171 ~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 171 EKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred HHHHHHcCCCeECCceeEeecccc
Confidence 999999999999999999999653
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.71 E-value=0.00011 Score=51.92 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=49.0
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEEeCCHH
Q psy258 41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVNYESSA 115 (238)
Q Consensus 41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVVF~~~e 115 (238)
|+|.|||..+- .+.|+.+|+ .||.+..+...+. .+.++|.|.+.+
T Consensus 1 v~i~nlp~~~~-----~~~l~~~f~-------------------------~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~ 50 (70)
T PF14259_consen 1 VYISNLPPSTT-----EEDLRNFFS-------------------------RFGPVEKVRLIKNKDGQSRGFAFVEFSSEE 50 (70)
T ss_dssp EEEESSTTT-------HHHHHHHCT-------------------------TSSBEEEEEEEESTTSSEEEEEEEEESSHH
T ss_pred CEEeCCCCCCC-----HHHHHHHHH-------------------------hcCCcceEEEEeeeccccCCEEEEEeCCHH
Confidence 68999998532 245667777 4455556666665 478999999999
Q ss_pred HHHHHHHHhcCCccCCcceE
Q psy258 116 AAAKARINLHQSVFASSKIN 135 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lr 135 (238)
.|.+|...+++..|.|+.++
T Consensus 51 ~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 51 DAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp HHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHCCCcEECCEEcC
Confidence 99999999998888887653
No 17
>KOG0125|consensus
Probab=97.63 E-value=0.00033 Score=65.86 Aligned_cols=79 Identities=29% Similarity=0.380 Sum_probs=61.8
Q ss_pred CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec--CCCCeEEEEeC
Q psy258 35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL--KSFRRMRVNYE 112 (238)
Q Consensus 35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L--kSF~RiiVVF~ 112 (238)
.|-|+-|+|.|+|=+ |.+++|+ +.|.+||||| -|+++.= -|.|==+|.|+
T Consensus 93 ~~~pkRLhVSNIPFr-FRdpDL~----aMF~kfG~Vl-----------------------dVEIIfNERGSKGFGFVTme 144 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFR-FRDPDLR----AMFEKFGKVL-----------------------DVEIIFNERGSKGFGFVTME 144 (376)
T ss_pred CCCCceeEeecCCcc-ccCccHH----HHHHhhCcee-----------------------eEEEEeccCCCCccceEEec
Confidence 578999999999854 6667776 5677888887 3444331 23334499999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++++|.+||.+|||+.+.|.++.|.-|-.
T Consensus 145 n~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 145 NPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred ChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 99999999999999999999998888744
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.63 E-value=0.0002 Score=67.76 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=58.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+..+ ++-|-++|.|
T Consensus 186 ~~~l~v~nl~~~~te-----~~l~~~f~~~G~-------------------------i~~v~~~~d~~~g~~~g~afV~f 235 (457)
T TIGR01622 186 FLKLYVGNLHFNITE-----QELRQIFEPFGD-------------------------IEDVQLHRDPETGRSKGFGFIQF 235 (457)
T ss_pred CCEEEEcCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEEcCCCCccceEEEEEE
Confidence 369999999976544 345677886655 4444444 3446699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.+.|..|+..|++..+.|+.|+|.|++.
T Consensus 236 ~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 236 HDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999999999999764
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.62 E-value=0.0002 Score=70.12 Aligned_cols=72 Identities=24% Similarity=0.370 Sum_probs=58.9
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeCC
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYES 113 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~~ 113 (238)
||||.||+..+-+ +.|+++|++| |++.++..+ ++.|=++|.|.+
T Consensus 2 sl~VgnLp~~vte-----~~L~~~F~~~-------------------------G~v~~v~v~~d~~t~~s~G~afV~F~~ 51 (562)
T TIGR01628 2 SLYVGDLDPDVTE-----AKLYDLFKPF-------------------------GPVLSVRVCRDSVTRRSLGYGYVNFQN 51 (562)
T ss_pred eEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEEecCCCCCcceEEEEEECC
Confidence 8999999987754 3566788855 555555554 456679999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.++|.+|...+++..++|+.++|.|++.
T Consensus 52 ~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 52 PADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred HHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 9999999999999999999999999865
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.53 E-value=0.00033 Score=67.08 Aligned_cols=74 Identities=26% Similarity=0.270 Sum_probs=58.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
+++|||.||+..+-. +.|+.+|++||. +..+..++ +.|-++|.|
T Consensus 295 ~~~l~v~nlp~~~~~-----~~l~~~f~~~G~-------------------------i~~~~~~~~~~~g~~~g~afv~f 344 (509)
T TIGR01642 295 KDRIYIGNLPLYLGE-----DQIKELLESFGD-------------------------LKAFNLIKDIATGLSKGYAFCEY 344 (509)
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEecCCCCCcCeEEEEEE
Confidence 569999999976544 355677775554 44444433 557799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|..|...|++..++|..|+|.++..
T Consensus 345 ~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 345 KDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 999999999999999999999999999854
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.53 E-value=0.00034 Score=68.42 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=59.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~ 112 (238)
.++|||.||+..+-. +.|+.+|++||+ +.++..++ +.|-++|.|.
T Consensus 285 ~~~l~V~nl~~~~~~-----~~L~~~F~~~G~-------------------------i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 285 GVNLYVKNLDDTVTD-----EKLRELFSECGE-------------------------ITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred CCEEEEeCCCCccCH-----HHHHHHHHhcCC-------------------------eEEEEEEECCCCCcCCeEEEEeC
Confidence 358999999986543 456678886655 54554443 4467999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..|.|++++|.+|+.
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 99999999999999999999999999876
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.53 E-value=0.00029 Score=70.61 Aligned_cols=72 Identities=29% Similarity=0.391 Sum_probs=57.9
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhc--CCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQF--GKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
++|||.||+..+-+ +.|+.+|++| |+ +..+..++. -++|.|.+.++
T Consensus 234 k~LfVgNL~~~~te-----e~L~~~F~~f~~G~-------------------------I~rV~~~rg--fAFVeF~s~e~ 281 (578)
T TIGR01648 234 KILYVRNLMTTTTE-----EIIEKSFSEFKPGK-------------------------VERVKKIRD--YAFVHFEDRED 281 (578)
T ss_pred cEEEEeCCCCCCCH-----HHHHHHHHhcCCCc-------------------------eEEEEeecC--eEEEEeCCHHH
Confidence 58999999976543 4566778866 55 444444444 58999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
|.+|+..|++..|.|+.|+|.||++.
T Consensus 282 A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 282 AVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred HHHHHHHhCCCEECCEEEEEEEccCC
Confidence 99999999999999999999999874
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.52 E-value=0.0004 Score=66.57 Aligned_cols=80 Identities=21% Similarity=0.318 Sum_probs=58.0
Q ss_pred CCC-cEEEecCC--CCCCCCh---HHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---------
Q psy258 37 LPK-SLIITNLN--PDLFKDD---ALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL--------- 101 (238)
Q Consensus 37 ~p~-TLiitnL~--~~vf~~~---~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L--------- 101 (238)
.|+ +|+++|+. ++++.+. .+.+.|+.+|+ .||.+..+...
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~-------------------------~~G~v~~v~i~~~~~~~~~~ 461 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFS-------------------------KYGPLINIVIPRPNGDRNST 461 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHH-------------------------hcCCeeEEEeeccCcCCCcC
Confidence 344 78999985 2333322 23445555555 55556655544
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 102 KSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 102 kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+++|.++|.|.+.+.|..|...|+|..|+|+.+.+.|...
T Consensus 462 ~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 462 PGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 3468899999999999999999999999999999999654
No 24
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.50 E-value=0.00039 Score=67.47 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=59.7
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
.+|+|.||+..+-+ +.|+++|++| |.+..+..+++.+.++|-|.+.++|.
T Consensus 3 ~vv~V~nLp~~~te-----~~L~~~f~~f-------------------------G~V~~v~i~~~k~~afVef~~~e~A~ 52 (481)
T TIGR01649 3 PVVHVRNLPQDVVE-----ADLVEALIPF-------------------------GPVSYVMMLPGKRQALVEFEDEESAK 52 (481)
T ss_pred cEEEEcCCCCCCCH-----HHHHHHHHhc-------------------------CCeeEEEEECCCCEEEEEeCchHHHH
Confidence 58999999987655 3566778855 55667777788899999999999999
Q ss_pred HHHHHh--cCCccCCcceEEEEeCC
Q psy258 119 KARINL--HQSVFASSKINVYFVQP 141 (238)
Q Consensus 119 ~Ar~~L--~~~~f~g~~lrIyFAq~ 141 (238)
+|...+ .+..+.|..++|.|++.
T Consensus 53 ~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 53 ACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred HHHHHhhcCCceEcCeEEEEEecCC
Confidence 999875 45678999999999875
No 25
>smart00360 RRM RNA recognition motif.
Probab=97.45 E-value=0.00069 Score=45.36 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=35.9
Q ss_pred hcCCceEEEecCC------CCeEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q psy258 91 QFGKPKSFQYLKS------FRRMRVNYESSAAAAKARINLHQSVFASSKINV 136 (238)
Q Consensus 91 ~~~~iv~fv~LkS------F~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrI 136 (238)
.||++..+...+. .+.++|.|.+.+.|.+|+..+++..+.|+.++|
T Consensus 19 ~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 19 KFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred hhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 4455555544443 468999999999999999999998888877765
No 26
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.38 E-value=0.00089 Score=61.19 Aligned_cols=73 Identities=11% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---CCCeEEEEeCCH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---SFRRMRVNYESS 114 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---SF~RiiVVF~~~ 114 (238)
-+|+||+||+..+=+ +.|+++|++||+|. .+...+ +-|-++|.|.+.
T Consensus 4 ~rtVfVgNLs~~tTE-----~dLrefFS~~G~I~-------------------------~V~I~~d~~~~GfAFVtF~d~ 53 (260)
T PLN03120 4 VRTVKVSNVSLKATE-----RDIKEFFSFSGDIE-------------------------YVEMQSENERSQIAYVTFKDP 53 (260)
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCCeE-------------------------EEEEeecCCCCCEEEEEeCcH
Confidence 369999999986444 45678888776653 333322 346799999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|..|.. |++..+.|+.++|..+..
T Consensus 54 eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 54 QGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred HHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 99999995 999999999999998765
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.33 E-value=0.00098 Score=62.77 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=56.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
.++|+|.||+..+-+ +.|+.+|++| +.+..+..++. .+-++|.|
T Consensus 193 ~~~lfV~nLp~~vte-----e~L~~~F~~f-------------------------G~V~~v~i~~d~~tg~~kG~aFV~F 242 (346)
T TIGR01659 193 DTNLYVTNLPRTITD-----DQLDTIFGKY-------------------------GQIVQKNILRDKLTGTPRGVAFVRF 242 (346)
T ss_pred cceeEEeCCCCcccH-----HHHHHHHHhc-------------------------CCEEEEEEeecCCCCccceEEEEEE
Confidence 358999999986544 3566778855 55555554433 25699999
Q ss_pred CCHHHHHHHHHHhcCCccCC--cceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFAS--SKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g--~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..+.+ .+++|-+++.
T Consensus 243 ~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 243 NKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred CCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 99999999999999987765 5789999876
No 28
>KOG0109|consensus
Probab=97.30 E-value=0.00044 Score=64.28 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=47.4
Q ss_pred HHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 85 IETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 85 ~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
.++.|+.||++++.-.-|.. ++|-|+..+.|..|++.|++..|.|++|+|+.+
T Consensus 95 lRa~fe~ygpviecdivkdy--~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 95 LRAKFEKYGPVIECDIVKDY--AFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred HhhhhcccCCceeeeeecce--eEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 66777799999999888876 578889999999999999999999999999986
No 29
>smart00361 RRM_1 RNA recognition motif.
Probab=97.15 E-value=0.0021 Score=46.40 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=40.1
Q ss_pred HHHHHhhhhcCCceEEE--ecC-------CCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q psy258 83 EQIETLLSQFGKPKSFQ--YLK-------SFRRMRVNYESSAAAAKARINLHQSVFASSKINV 136 (238)
Q Consensus 83 ~~~~~~~~~~~~iv~fv--~Lk-------SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrI 136 (238)
+.|++..+.||.+..+. .+. +.|.++|.|.+.++|..|...|++..+.|+.+++
T Consensus 7 ~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 7 REFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred HHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 33444444666666552 332 4578999999999999999999999999877764
No 30
>KOG0148|consensus
Probab=97.10 E-value=0.0015 Score=60.23 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=76.8
Q ss_pred CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCc-------------------------------chhhhhhhHHHH
Q psy258 35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPK-------------------------------SFQYLKNDALKE 83 (238)
Q Consensus 35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~-------------------------------~~~~~~~~~~~~ 83 (238)
++-|.||||-||+..|-+ +-|-.||+|-|-+. .|-+.+-.-=.+
T Consensus 3 ~~~prtlyvgnld~~vte-----~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e 77 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTE-----DFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNE 77 (321)
T ss_pred CCCCceEEeeccChhhHH-----HHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchH
Confidence 466999999999886654 34567999998741 111111122234
Q ss_pred HHHHhhhhcCCceEEEecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 84 QIETLLSQFGKPKSFQYLK------SFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 84 ~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+++.|..||++.+-...| |.|=-+|+|.+.++|.+|.+.|.+..++++.+|-.+|-.
T Consensus 78 ~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 78 KLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred HHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4677777999998777665 668899999999999999999999988888899888755
No 31
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.08 E-value=0.0031 Score=49.09 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=46.2
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcC-CceEEEecCCCCeEEEEeCCHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFG-KPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
+.|+|.|||... ....++..|+.|+. ..| .+++++ =+.++|-|.+.+.|
T Consensus 3 s~L~V~NLP~~~-d~~~I~~RL~qLsd-------------------------NCGGkVl~v~----~~tAilrF~~~~~A 52 (90)
T PF11608_consen 3 SLLYVSNLPTNK-DPSSIKNRLRQLSD-------------------------NCGGKVLSVS----GGTAILRFPNQEFA 52 (90)
T ss_dssp EEEEEES--TTS--HHHHHHHHHHHHH-------------------------TTT--EEE------TT-EEEEESSHHHH
T ss_pred cEEEEecCCCCC-CHHHHHHHHHHHhh-------------------------ccCCEEEEEe----CCEEEEEeCCHHHH
Confidence 468999998632 12335656666655 443 444443 48999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeC
Q psy258 118 AKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
.+|..-|++.+.+|+.+.+.|..
T Consensus 53 ~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 53 ERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHHHHTT--SSSS--EEESS-
T ss_pred HHHHHhhcccccccceEEEEEcC
Confidence 99999999999999999999974
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=97.07 E-value=0.0009 Score=67.56 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe------cCCCCeEEE
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY------LKSFRRMRV 109 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~------LkSF~RiiV 109 (238)
....+|||.||+..+-+ +.|+.+|++||.| .++.. -++.|=++|
T Consensus 105 ~~~~rLfVGnLp~~~tE-----e~Lr~lF~~fG~I-------------------------~sV~I~~D~~TgkskGfAFV 154 (612)
T TIGR01645 105 AIMCRVYVGSISFELRE-----DTIRRAFDPFGPI-------------------------KSINMSWDPATGKHKGFAFV 154 (612)
T ss_pred cCCCEEEEcCCCCCCCH-----HHHHHHHHccCCE-------------------------EEEEEeecCCCCCcCCeEEE
Confidence 34569999999886655 3566788866554 44333 356778999
Q ss_pred EeCCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 110 NYESSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
.|.+.++|.+|+..|++..+.|+.++|.+..
T Consensus 155 eF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 155 EYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred EeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 9999999999999999999999999987654
No 33
>KOG0122|consensus
Probab=97.04 E-value=0.0024 Score=58.08 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=58.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
-+|+-||||+++.=+ ++ |+.||+.| |++.....-+ +.|=++|.|
T Consensus 189 ~~tvRvtNLsed~~E-~d----L~eLf~~f-------------------------g~i~rvylardK~TG~~kGFAFVtF 238 (270)
T KOG0122|consen 189 EATVRVTNLSEDMRE-DD----LEELFRPF-------------------------GPITRVYLARDKETGLSKGFAFVTF 238 (270)
T ss_pred cceeEEecCccccCh-hH----HHHHhhcc-------------------------CccceeEEEEccccCcccceEEEEE
Confidence 479999999986555 33 47888855 4444333322 446799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|++|...|+|.-+....|+|-++++
T Consensus 239 ~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 239 ESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred ecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 999999999999999988878899999987
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=96.97 E-value=0.005 Score=62.28 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
.++|||.||+..+-. +.|+.+|++||+ +......+ +-|=.+|.|
T Consensus 204 ~~rLfVgnLp~~vte-----edLk~lFs~FG~-------------------------I~svrl~~D~~tgksKGfGFVeF 253 (612)
T TIGR01645 204 FNRIYVASVHPDLSE-----TDIKSVFEAFGE-------------------------IVKCQLARAPTGRGHKGYGFIEY 253 (612)
T ss_pred cceEEeecCCCCCCH-----HHHHHHHhhcCC-------------------------eeEEEEEecCCCCCcCCeEEEEE
Confidence 469999999976544 345678886655 44443332 345699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|..|...|+++.++|+.|+|.++.+
T Consensus 254 e~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 254 NNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 999999999999999999999999998764
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=96.82 E-value=0.0043 Score=58.79 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=47.3
Q ss_pred HHHHhhhhcCCceEEEec--CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 84 QIETLLSQFGKPKSFQYL--KSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 84 ~~~~~~~~~~~iv~fv~L--kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+++.+++||.++.+... .+-|.++|-|.+.++|.+|+..|+|-.|.|..+.+.|...
T Consensus 388 dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 388 DVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 444455567777766665 3458999999999999999999999999999999999754
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=96.66 E-value=0.0058 Score=55.43 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=52.5
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC---CCeEEEEeCCHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS---FRRMRVNYESSA 115 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS---F~RiiVVF~~~e 115 (238)
.|++|+||+.+.=+ +.|+.+|++||+| ..+...+. -+=++|.|.+.+
T Consensus 6 ~TV~V~NLS~~tTE-----~dLrefFS~~G~I-------------------------~~V~I~~D~et~gfAfVtF~d~~ 55 (243)
T PLN03121 6 YTAEVTNLSPKATE-----KDVYDFFSHCGAI-------------------------EHVEIIRSGEYACTAYVTFKDAY 55 (243)
T ss_pred eEEEEecCCCCCCH-----HHHHHHHHhcCCe-------------------------EEEEEecCCCcceEEEEEECCHH
Confidence 59999999986544 4677889977664 34433332 245999999999
Q ss_pred HHHHHHHHhcCCccCCcceEEEEe
Q psy258 116 AAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
+|..|. .|+|..|.+.++.|.-.
T Consensus 56 aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 56 ALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred HHHHHH-hcCCCeeCCceEEEEeC
Confidence 998888 79999899887776553
No 37
>KOG0107|consensus
Probab=96.58 E-value=0.01 Score=51.86 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=62.9
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCce-EEEecCCCCeEEEEeCCH
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPK-SFQYLKSFRRMRVNYESS 114 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv-~fv~LkSF~RiiVVF~~~ 114 (238)
++-+-+||-||.... -|.+||.+|+.|| ++- -|++-.--+=++|-|++.
T Consensus 8 ~~~~kVYVGnL~~~a-----~k~eLE~~F~~yG-------------------------~lrsvWvArnPPGfAFVEFed~ 57 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRA-----TKRELERAFSKYG-------------------------PLRSVWVARNPPGFAFVEFEDP 57 (195)
T ss_pred CCCceEEeccCCCCc-----chHHHHHHHHhcC-------------------------cceeEEEeecCCCceEEeccCc
Confidence 455789999999754 4567889999554 444 577777778899999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+|..|...|++..|.|..++|-++.-
T Consensus 58 RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 58 RDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred ccHHHHHhhcCCccccCceEEEEeecC
Confidence 999999999999999999999988754
No 38
>KOG1190|consensus
Probab=96.53 E-value=0.01 Score=57.58 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=62.8
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC-eEEEEeCCHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR-RMRVNYESSAAA 117 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~-RiiVVF~~~eaA 117 (238)
..|.++||++..-.. +.|-.||+ .||++..+..|.+-+ .++|-+.+..-|
T Consensus 298 ~vllvsnln~~~VT~----d~LftlFg-------------------------vYGdVqRVkil~nkkd~ALIQmsd~~qA 348 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTP----DVLFTLFG-------------------------VYGDVQRVKILYNKKDNALIQMSDGQQA 348 (492)
T ss_pred eEEEEecCchhccch----hHHHHHHh-------------------------hhcceEEEEeeecCCcceeeeecchhHH
Confidence 589999999865553 34567777 677888888877664 899999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.|+..|+|.-|+|+.+||.|++.
T Consensus 349 qLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 349 QLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred HHHHHHhhcceecCceEEEeeccC
Confidence 999999999999999999999987
No 39
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.47 E-value=0.014 Score=46.06 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=59.4
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEEEEe
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMRVNY 111 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~RiiVVF 111 (238)
+||-|.|+|.+.=+ ..|++.|.+.|. .-..|.||+ ++|=++|.|
T Consensus 2 TTvMirNIPn~~t~-~~L~~~l~~~~~----------------------------g~yDF~YLPiDf~~~~N~GYAFVNf 52 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQ-EMLIQILDEHFK----------------------------GKYDFFYLPIDFKNKCNLGYAFVNF 52 (97)
T ss_pred eeEEEecCCCCCCH-HHHHHHHHHhcc----------------------------CcceEEEeeeeccCCCceEEEEEEc
Confidence 69999999987655 678877777543 345666666 678899999
Q ss_pred CCHHHHHHHHHHhcCCccC----CcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFA----SSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~----g~~lrIyFAq~ 141 (238)
.+++.|..-.+..+|..|. .+.+.|.||.-
T Consensus 53 ~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAri 86 (97)
T PF04059_consen 53 TSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARI 86 (97)
T ss_pred CCHHHHHHHHHHHcCCccccCCCCcEEEEehhHh
Confidence 9999999999999998775 36789999865
No 40
>KOG0117|consensus
Probab=96.40 E-value=0.012 Score=57.44 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=60.1
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
..|||.||...+-+ +.|+.+|.+||++ -.++-+|- =++|-|.+.++|.
T Consensus 260 KvLYVRNL~~~tTe-----E~lk~~F~~~G~v-------------------------eRVkk~rD--YaFVHf~eR~dav 307 (506)
T KOG0117|consen 260 KVLYVRNLMESTTE-----ETLKKLFNEFGKV-------------------------ERVKKPRD--YAFVHFAEREDAV 307 (506)
T ss_pred eeeeeeccchhhhH-----HHHHHHHHhccce-------------------------EEeecccc--eeEEeecchHHHH
Confidence 59999999985544 5677888877664 34444444 4899999999999
Q ss_pred HHHHHhcCCccCCcceEEEEeCCCCC
Q psy258 119 KARINLHQSVFASSKINVYFVQPMTP 144 (238)
Q Consensus 119 ~Ar~~L~~~~f~g~~lrIyFAq~~t~ 144 (238)
+|+..|.+..+.|..|.|.+||++..
T Consensus 308 kAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 308 KAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred HHHHHhcCceecCceEEEEecCChhh
Confidence 99999999999999999999998543
No 41
>KOG1457|consensus
Probab=96.34 E-value=0.014 Score=52.96 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=58.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC--C------eEEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF--R------RMRV 109 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF--~------RiiV 109 (238)
-.||+|.-||.+|+- ++|+.|||.|-.+ +-..||.= + =+++
T Consensus 34 VRTLFVSGLP~DvKp-----REiynLFR~f~GY--------------------------EgslLK~Tsk~~~~~~pvaFa 82 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKP-----REIYNLFRRFHGY--------------------------EGSLLKYTSKGDQVCKPVAFA 82 (284)
T ss_pred cceeeeccCCcccCH-----HHHHHHhccCCCc--------------------------cceeeeeccCCCccccceEEE
Confidence 369999999997765 5899999977332 22223322 1 2689
Q ss_pred EeCCHHHHHHHHHHhcCCccC---CcceEEEEeCCCCCC
Q psy258 110 NYESSAAAAKARINLHQSVFA---SSKINVYFVQPMTPF 145 (238)
Q Consensus 110 VF~~~eaA~~Ar~~L~~~~f~---g~~lrIyFAq~~t~~ 145 (238)
+|.+.+.|..||..|+|..|- +..++|-+|++.+..
T Consensus 83 tF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~ 121 (284)
T KOG1457|consen 83 TFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKR 121 (284)
T ss_pred EecchHHHHHHHHHhcCeeeccccCceeEeeehhcCccc
Confidence 999999999999999997664 467999999985543
No 42
>KOG0110|consensus
Probab=96.32 E-value=0.016 Score=59.15 Aligned_cols=86 Identities=23% Similarity=0.279 Sum_probs=62.1
Q ss_pred CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258 35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS 114 (238)
Q Consensus 35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ 114 (238)
.+-+++||++|||= . .-++.++.+|+.+|+|++.+ |+.--+... -..|+|=.+|-|.+.
T Consensus 512 ~~~~t~lfvkNlnf---~--Tt~e~l~~~F~k~G~VlS~~--------------I~kkkd~~~--k~lSmGfgFVEF~~~ 570 (725)
T KOG0110|consen 512 EETETKLFVKNLNF---D--TTLEDLEDLFSKQGTVLSIE--------------ISKKKDPAN--KYLSMGFGFVEFAKP 570 (725)
T ss_pred cccchhhhhhcCCc---c--cchhHHHHHHHhcCeEEEEE--------------Eeccccccc--cccccceeEEEecCH
Confidence 34455699999983 2 34558889999777765111 001111111 344778899999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.|++|.+.|+|+.+-|..+.|.|+..
T Consensus 571 e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 571 ESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred HHHHHHHHHhcCceecCceEEEEeccC
Confidence 999999999999999999999999873
No 43
>KOG1190|consensus
Probab=96.31 E-value=0.0045 Score=59.91 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=61.2
Q ss_pred CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258 35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS 114 (238)
Q Consensus 35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ 114 (238)
++=|+++..|=+.. .|- +--.+-|..+|+.||+++ .+++|.-=-.| |++|-|.+.
T Consensus 144 ~~~~n~vLr~iie~-m~y-pVslDVLHqvFS~fG~Vl----------------------KIiTF~Knn~F-QALvQy~d~ 198 (492)
T KOG1190|consen 144 EDGPNPVLRTIIEN-MFY-PVSLDVLHQVFSKFGFVL----------------------KIITFTKNNGF-QALVQYTDA 198 (492)
T ss_pred cCCCceeEEEEecc-cee-eeEHHHHHHHHhhcceeE----------------------EEEEEecccch-hhhhhccch
Confidence 45577777666643 344 344668999999999987 56666544444 588999999
Q ss_pred HHHHHHHHHhcCCccCCc--ceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASS--KINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~--~lrIyFAq~ 141 (238)
+.|+.||..|+|..++.- .+||.|++-
T Consensus 199 ~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 199 VSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred hhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 999999999999877653 478888865
No 44
>KOG4660|consensus
Probab=96.25 E-value=0.0058 Score=60.66 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=58.8
Q ss_pred cccCCCCCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe-cCCCCeE
Q psy258 30 DLINDEQLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY-LKSFRRM 107 (238)
Q Consensus 30 ~~~~~~~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~-LkSF~Ri 107 (238)
|.....+.++ ||.|+||+..|-. +.|+.+|+.||.|. .+.- .-+-+.+
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn-----~~L~~~f~~yGeir-------------------------~ir~t~~~~~~~ 115 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSN-----DTLLRIFGAYGEIR-------------------------EIRETPNKRGIV 115 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCH-----HHHHHHHHhhcchh-------------------------hhhcccccCceE
Confidence 4444456666 9999999998877 35567788666543 3222 2234678
Q ss_pred EEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 108 RVNYESSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 108 iVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
+|-|.|+..|++|.+.|.+..+.++.+++..+
T Consensus 116 ~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~ 147 (549)
T KOG4660|consen 116 FVEFYDVRDAERALKALNRREIAGKRIKRPGG 147 (549)
T ss_pred EEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence 99999999999999999999999888874443
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=96.25 E-value=0.014 Score=58.74 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=53.2
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEe
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNY 111 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF 111 (238)
...+|+|.||+..+.+ + .|+.+|++| |.+.++..++ +.+=++|.|
T Consensus 57 ~~~~lFVgnLp~~~tE-d----~L~~~F~~~-------------------------G~I~~vrl~~D~sG~sRGfaFV~F 106 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYE-D----ELVPLFEKA-------------------------GPIYELRLMMDFSGQNRGYAFVTF 106 (578)
T ss_pred CCCEEEeCCCCCCCCH-H----HHHHHHHhh-------------------------CCEEEEEEEECCCCCccceEEEEe
Confidence 4579999999998877 3 445677755 5566665543 445599999
Q ss_pred CCHHHHHHHHHHhcCCccC-CcceEEEE
Q psy258 112 ESSAAAAKARINLHQSVFA-SSKINVYF 138 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~-g~~lrIyF 138 (238)
.+.++|.+|...|++..+. ++.+.+..
T Consensus 107 ~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 107 CGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCHHHHHHHHHHcCCCeecCCccccccc
Confidence 9999999999999998764 44444443
No 46
>KOG0130|consensus
Probab=96.20 E-value=0.012 Score=49.76 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=56.4
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAK 119 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~ 119 (238)
-|+||++++ +.--+.+.+.|+.||+|. ...-.+.-..-=.-|=++|-|++.+.|+.
T Consensus 74 Ii~VtgvHe-----EatEedi~d~F~dyGeiK-------------------NihLNLDRRtGy~KGYaLvEYet~keAq~ 129 (170)
T KOG0130|consen 74 IIFVTGVHE-----EATEEDIHDKFADYGEIK-------------------NIHLNLDRRTGYVKGYALVEYETLKEAQA 129 (170)
T ss_pred EEEEeccCc-----chhHHHHHHHHhhccccc-------------------ceeeccccccccccceeeeehHhHHHHHH
Confidence 689999998 345567889999999886 11111111111122569999999999999
Q ss_pred HHHHhcCCccCCcceEEEEeCC
Q psy258 120 ARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 120 Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|+..+.+..+.|..+.|-|+=.
T Consensus 130 A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 130 AIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred HHHhccchhhhCCceeEEEEEe
Confidence 9999999999998877766533
No 47
>KOG0105|consensus
Probab=96.11 E-value=0.01 Score=52.48 Aligned_cols=127 Identities=20% Similarity=0.313 Sum_probs=86.0
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCe----EEEEeCCH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRR----MRVNYESS 114 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~R----iiVVF~~~ 114 (238)
-++|+-|||.+|-++ .+++||.+| +.+. .+-||+-.+ ++|-|+++
T Consensus 7 ~~iyvGNLP~diRek-----eieDlFyKy-------------------------g~i~-~ieLK~r~g~ppfafVeFEd~ 55 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREK-----EIEDLFYKY-------------------------GRIR-EIELKNRPGPPPFAFVEFEDP 55 (241)
T ss_pred ceEEecCCCcchhhc-----cHHHHHhhh-------------------------cceE-EEEeccCCCCCCeeEEEecCc
Confidence 489999999877662 577888855 4443 356777765 99999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCCCCCCCC--------------CCCccCCCCCCcceeeCCCCCCCC-CCCC----
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQPMTPFDS--------------ADQHLQPPAPTKQFLISPPSSPPV-GWEP---- 175 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~--------------~~~~L~~P~~~K~FLISPP~SPP~-gWe~---- 175 (238)
.+|.-|.-.-++..+.+-.|||-|+..--+... ....--+|.-...|-+=--+=||. -|..
T Consensus 56 RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDH 135 (241)
T KOG0105|consen 56 RDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDH 135 (241)
T ss_pred cchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHH
Confidence 999999999999999999999999754211100 122334666556665544444444 5873
Q ss_pred CCCCCC------------CC----cHHHHHHHHhcCC
Q psy258 176 RPESEP------------LV----NYDLLAAIASLTP 196 (238)
Q Consensus 176 ~~E~~P------------~~----~~DL~~ala~L~~ 196 (238)
-.|.+- ++ .+|+-.|+.+|..
T Consensus 136 mReaGdvCfadv~rDg~GvV~~~r~eDMkYAvr~ld~ 172 (241)
T KOG0105|consen 136 MREAGDVCFADVQRDGVGVVEYLRKEDMKYAVRKLDD 172 (241)
T ss_pred HHhhCCeeeeeeecccceeeeeeehhhHHHHHHhhcc
Confidence 123222 11 4889999999964
No 48
>PLN03213 repressor of silencing 3; Provisional
Probab=96.02 E-value=0.023 Score=56.52 Aligned_cols=75 Identities=12% Similarity=0.182 Sum_probs=56.1
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH--HH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS--AA 116 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~--ea 116 (238)
.+|||-||...+=. +.|+++|++||+|. -+.+.-=+..|=++|-|.+. .+
T Consensus 11 MRIYVGNLSydVTE-----DDLravFSeFGsVk-----------------------dVEIpRETGRGFAFVEMssdddaE 62 (759)
T PLN03213 11 VRLHVGGLGESVGR-----DDLLKIFSPMGTVD-----------------------AVEFVRTKGRSFAYIDFSPSSTNS 62 (759)
T ss_pred eEEEEeCCCCCCCH-----HHHHHHHHhcCCee-----------------------EEEEecccCCceEEEEecCCcHHH
Confidence 58999999987655 45668899888875 22332111123378888876 67
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+..|...|++..|+|..|+|.=|++
T Consensus 63 eeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 63 LTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred HHHHHHHhcCCeecCceeEEeeccH
Confidence 8999999999999999999998854
No 49
>KOG0415|consensus
Probab=96.01 E-value=0.0066 Score=58.05 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=65.4
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
|-|+||.||+ |=.+ +-|+-+||.||+|. .-.-+-.|..--|++=++|-|++.++..
T Consensus 240 NVLFVCKLNP-VTtD----eDLeiIFSrFG~i~-------------------sceVIRD~ktgdsLqyaFiEFen~escE 295 (479)
T KOG0415|consen 240 NVLFVCKLNP-VTTD----EDLEIIFSRFGKIV-------------------SCEVIRDRKTGDSLQYAFIEFENKESCE 295 (479)
T ss_pred ceEEEEecCC-cccc----cchhhHHhhcccce-------------------eeeEEecccccchhheeeeeecchhhHH
Confidence 5899999987 4443 34567899888765 2223335555557778999999999999
Q ss_pred HHHHHhcCCccCCcceEEEEeCCCCCC
Q psy258 119 KARINLHQSVFASSKINVYFVQPMTPF 145 (238)
Q Consensus 119 ~Ar~~L~~~~f~g~~lrIyFAq~~t~~ 145 (238)
+|--.|++.-+-+..|.|-|+|+++.+
T Consensus 296 ~AyFKMdNvLIDDrRIHVDFSQSVsk~ 322 (479)
T KOG0415|consen 296 QAYFKMDNVLIDDRRIHVDFSQSVSKV 322 (479)
T ss_pred HHHhhhcceeeccceEEeehhhhhhhh
Confidence 999999999899999999999997763
No 50
>KOG0533|consensus
Probab=96.00 E-value=0.022 Score=51.65 Aligned_cols=76 Identities=14% Similarity=0.312 Sum_probs=58.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe---cCCCCeEEEEeCCH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY---LKSFRRMRVNYESS 114 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~---LkSF~RiiVVF~~~ 114 (238)
+++|+|+||+.-|-. + .|+.||.+||.+. .+.+.| =++.|.+-|+|...
T Consensus 83 ~~~v~v~NL~~~V~~-~----Dl~eLF~~~~~~~-----------------------r~~vhy~~~G~s~Gta~v~~~r~ 134 (243)
T KOG0533|consen 83 STKVNVSNLPYGVID-A----DLKELFAEFGELK-----------------------RVAVHYDRAGRSLGTADVSFNRR 134 (243)
T ss_pred cceeeeecCCcCcch-H----HHHHHHHHhccce-----------------------EEeeccCCCCCCCccceeeecch
Confidence 568999999987776 3 4446777776432 222222 24668899999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|..|.+.++++.+.|.+|++.-..+
T Consensus 135 ~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 135 DDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred HhHHHHHHHhcCcccCCceeeeEEecC
Confidence 999999999999999999988877655
No 51
>KOG0153|consensus
Probab=95.81 E-value=0.021 Score=54.27 Aligned_cols=73 Identities=23% Similarity=0.380 Sum_probs=60.3
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
+||||-+|.+.+++ ..|++||- +||++-+++.+..-|=++|.|.+.++|+
T Consensus 229 ~tLyIg~l~d~v~e-----~dIrdhFy-------------------------qyGeirsi~~~~~~~CAFv~ftTR~aAE 278 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLE-----QDIRDHFY-------------------------QYGEIRSIRILPRKGCAFVTFTTREAAE 278 (377)
T ss_pred eEEEecccccchhH-----HHHHHHHh-------------------------hcCCeeeEEeecccccceeeehhhHHHH
Confidence 59999999986665 24667777 5678888888888888999999999999
Q ss_pred HHHHH-hcCCccCCcceEEEEeCC
Q psy258 119 KARIN-LHQSVFASSKINVYFVQP 141 (238)
Q Consensus 119 ~Ar~~-L~~~~f~g~~lrIyFAq~ 141 (238)
.|... .+...+.|.+++|.+|.+
T Consensus 279 ~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 279 KAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred HHHHhhcceeeecceEEEEEeCCC
Confidence 98865 555678898999999877
No 52
>KOG4207|consensus
Probab=95.67 E-value=0.023 Score=50.99 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=54.9
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe------cCCCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY------LKSFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~------LkSF~RiiVVF~ 112 (238)
++|.|-||--. .--+.|+.+|..||+| ..+-. -.+-|=++|-|.
T Consensus 14 ~SLkVdNLTyR-----Tspd~LrrvFekYG~v-------------------------gDVyIPrdr~Tr~sRgFaFVrf~ 63 (256)
T KOG4207|consen 14 TSLKVDNLTYR-----TSPDDLRRVFEKYGRV-------------------------GDVYIPRDRYTRQSRGFAFVRFH 63 (256)
T ss_pred eeEEecceecc-----CCHHHHHHHHHHhCcc-------------------------cceecccccccccccceeEEEee
Confidence 68999998632 2234567888866654 33221 124466999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+-.+|+.|+..|++..+.|..|+|++|+=
T Consensus 64 ~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 64 DKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ecchHHHHHHhhcceeeccceeeehhhhc
Confidence 99999999999999999999999999854
No 53
>KOG0132|consensus
Probab=95.53 E-value=0.044 Score=56.73 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=66.5
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHH
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSA 115 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~e 115 (238)
-..+||.|-.|+..+.+ .+|+ ++|. .||++.++......|=++|+..+.+
T Consensus 419 V~SrTLwvG~i~k~v~e-~dL~----~~fe-------------------------efGeiqSi~li~~R~cAfI~M~~Rq 468 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTE-QDLA----NLFE-------------------------EFGEIQSIILIPPRGCAFIKMVRRQ 468 (894)
T ss_pred EeeeeeeeccccchhhH-HHHH----HHHH-------------------------hcccceeEeeccCCceeEEEEeehh
Confidence 45569999999887777 4555 4444 6789999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258 116 AAAKARINLHQSVFASSKINVYFVQPMTP 144 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lrIyFAq~~t~ 144 (238)
+|.+|.+.|.+..+.++.++|++|-...+
T Consensus 469 dA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 469 DAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred HHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 99999999999999999999999865443
No 54
>KOG0123|consensus
Probab=95.33 E-value=0.033 Score=53.14 Aligned_cols=70 Identities=27% Similarity=0.344 Sum_probs=50.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
|..++|.||++.+-. +.|++.|+.||+|+|=.=+.. .-| +-+- +|.|++.++|
T Consensus 76 ~~~~~i~nl~~~~~~-----~~~~d~f~~~g~ilS~kv~~~------------~~g---------~kg~-FV~f~~e~~a 128 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDN-----KSLYDTFSEFGNILSCKVATD------------ENG---------SKGY-FVQFESEESA 128 (369)
T ss_pred CceeeecCCCcccCc-----HHHHHHHHhhcCeeEEEEEEc------------CCC---------ceee-EEEeCCHHHH
Confidence 455999999986544 467889998888762211110 001 4445 9999999999
Q ss_pred HHHHHHhcCCccCCcce
Q psy258 118 AKARINLHQSVFASSKI 134 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~l 134 (238)
.+|...++|.-++|+.+
T Consensus 129 ~~ai~~~ng~ll~~kki 145 (369)
T KOG0123|consen 129 KKAIEKLNGMLLNGKKI 145 (369)
T ss_pred HHHHHHhcCcccCCCee
Confidence 99999999988887654
No 55
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.20 E-value=0.073 Score=45.02 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=51.1
Q ss_pred cEEEecCC-----CCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258 40 SLIITNLN-----PDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS 114 (238)
Q Consensus 40 TLiitnL~-----~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ 114 (238)
|+++.=+. ...|. ++|..+|-.-|++||++. ++.|+- +.+||+|.+.
T Consensus 29 TVvVsv~~~~~~e~~~Fd-d~l~~~ll~~~~~~Gevv-----------------------LvRfv~----~~mwVTF~dg 80 (146)
T PF08952_consen 29 TVVVSVDSPSEDEDSSFD-DNLMDELLQKFAQYGEVV-----------------------LVRFVG----DTMWVTFRDG 80 (146)
T ss_dssp EEEEEECS-SCCCCHS---HHHHHHHHHHHHCCS-EC-----------------------EEEEET----TCEEEEESSC
T ss_pred eEEEEecCCCccccCcCC-HHHHHHHHHHHHhCCceE-----------------------EEEEeC----CeEEEEECcc
Confidence 77776665 35775 889989988888666543 333332 6899999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEE
Q psy258 115 AAAAKARINLHQSVFASSKINVYF 138 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyF 138 (238)
++|.+|. .+++..++|+.++|.-
T Consensus 81 ~sALaal-s~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 81 QSALAAL-SLDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHH-HGCCSEETTEEEEEEE
T ss_pred HHHHHHH-ccCCcEECCEEEEEEe
Confidence 9998886 5788889998888876
No 56
>KOG4212|consensus
Probab=94.93 E-value=0.06 Score=52.89 Aligned_cols=71 Identities=23% Similarity=0.272 Sum_probs=55.9
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
.++||.|||-. |. -| .|++-|+.||.++ |.++ ...=++.+ +|-|.+.+.|.
T Consensus 537 ~qIiirNlP~d-fT---Wq-mlrDKfre~G~v~--------------------yadi--me~GkskG--VVrF~s~edAE 587 (608)
T KOG4212|consen 537 CQIIIRNLPFD-FT---WQ-MLRDKFREIGHVL--------------------YADI--MENGKSKG--VVRFFSPEDAE 587 (608)
T ss_pred cEEEEecCCcc-cc---HH-HHHHHHHhcccee--------------------hhhh--hccCCccc--eEEecCHHHHH
Confidence 38999999854 43 22 5566677788876 5555 44556666 89999999999
Q ss_pred HHHHHhcCCccCCcceEEEE
Q psy258 119 KARINLHQSVFASSKINVYF 138 (238)
Q Consensus 119 ~Ar~~L~~~~f~g~~lrIyF 138 (238)
+|.+.|++..+.|..|+|.|
T Consensus 588 ra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 588 RACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred HHHHHhccCcccCceeeeee
Confidence 99999999999999999877
No 57
>KOG0111|consensus
Probab=94.73 E-value=0.049 Score=49.45 Aligned_cols=79 Identities=22% Similarity=0.307 Sum_probs=63.5
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
+||||--|-++|=+ .-|.+-|=.||.|. -..-.+....-|-.+=.+|-|.-.++|.
T Consensus 11 rtlYVGGladeVte-----kvLhaAFIPFGDI~-------------------dIqiPlDyesqkHRgFgFVefe~aEDAa 66 (298)
T KOG0111|consen 11 RTLYVGGLADEVTE-----KVLHAAFIPFGDIK-------------------DIQIPLDYESQKHRGFGFVEFEEAEDAA 66 (298)
T ss_pred eeEEeccchHHHHH-----HHHHhccccccchh-------------------hcccccchhcccccceeEEEeeccchhH
Confidence 59999999775432 35677788888875 3344555556666677899999999999
Q ss_pred HHHHHhcCCccCCcceEEEEeCC
Q psy258 119 KARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 119 ~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.|..-|++..++|+.+||.||++
T Consensus 67 aAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 67 AAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred HHhhcCchhhhcceeEEEeecCC
Confidence 99999999999999999999988
No 58
>KOG0108|consensus
Probab=94.64 E-value=0.085 Score=51.59 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=64.1
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
.+++|.|++-++-+ ++|..+|++.|.|+ .+.-+.+.-.=+.-|=.+|.|.+.+.|.
T Consensus 19 ~~v~vgnip~~~se-----~~l~~~~~~~g~v~-------------------s~~~v~D~~tG~~~G~~f~~~~~~~~~~ 74 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSE-----EQLLSIFSGVGPVL-------------------SFRLVYDRETGKPKGFGFCEFTDEETAE 74 (435)
T ss_pred cceEecCCCCcccH-----HHHHHHHhccCccc-------------------eeeecccccCCCcCceeeEecCchhhHH
Confidence 68999999865444 57778888777776 4444455555556677999999999999
Q ss_pred HHHHHhcCCccCCcceEEEEeCC
Q psy258 119 KARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 119 ~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.|.+.|.+..|+|..+||-|+..
T Consensus 75 ~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 75 RAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred HHHHhcCCcccCCceEEeecccc
Confidence 99999999999999999999865
No 59
>KOG0123|consensus
Probab=94.44 E-value=0.062 Score=51.24 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=37.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 103 SFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 103 SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
|+|=+.|.|.+.+.|.+|+..+....+.|+++||-+++.+
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 7899999999999999999999999999999999998873
No 60
>KOG0145|consensus
Probab=94.22 E-value=0.17 Score=47.03 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=60.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEE------ecCCCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQ------YLKSFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv------~LkSF~RiiVVF 111 (238)
-+-|||+=||... -++++++||++-|. +-+.. .-.|+|-=+|.|
T Consensus 41 kTNLIvNYLPQ~M-----TqdE~rSLF~SiGe-------------------------iEScKLvRDKitGqSLGYGFVNY 90 (360)
T KOG0145|consen 41 KTNLIVNYLPQNM-----TQDELRSLFGSIGE-------------------------IESCKLVRDKITGQSLGYGFVNY 90 (360)
T ss_pred cceeeeeeccccc-----CHHHHHHHhhcccc-------------------------eeeeeeeeccccccccccceeee
Confidence 4578888888643 45678899995544 44333 334778889999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQPMTP 144 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~ 144 (238)
-++++|.+|.-.|.|.-+..+.++|.||.+.+.
T Consensus 91 v~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~ 123 (360)
T KOG0145|consen 91 VRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD 123 (360)
T ss_pred cChHHHHHHHhhhcceeeccceEEEEeccCChh
Confidence 999999999999999999999999999998544
No 61
>KOG0110|consensus
Probab=94.19 E-value=0.084 Score=54.06 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=62.2
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC----e--EEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR----R--MRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~----R--iiVVF~ 112 (238)
+-|+|.||+ |+ .-++.++.||. +||.+.++...+.++ | .+|-|-
T Consensus 614 tKIlVRNip---Fe--At~rEVr~LF~-------------------------aFGqlksvRlPKK~~k~a~rGF~Fv~f~ 663 (725)
T KOG0110|consen 614 TKILVRNIP---FE--ATKREVRKLFT-------------------------AFGQLKSVRLPKKIGKGAHRGFGFVDFL 663 (725)
T ss_pred ceeeeeccc---hH--HHHHHHHHHHh-------------------------cccceeeeccchhhcchhhccceeeecc
Confidence 478999997 44 44556777777 777788888888753 2 799999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQPMTP 144 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~ 144 (238)
+.+.|.+|+..|..+.++|..+-+.||+..+.
T Consensus 664 t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 664 TPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred CcHHHHHHHHhhcccceechhhheehhccchH
Confidence 99999999999999999999999999987443
No 62
>KOG1456|consensus
Probab=93.71 E-value=0.28 Score=47.49 Aligned_cols=106 Identities=19% Similarity=0.297 Sum_probs=70.1
Q ss_pred ccceeeeeccCCCCCCCCCCCcccccCCCCCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHH
Q psy258 7 DHKMIINAIDNLKDTGDMGDSLDDLINDEQLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQI 85 (238)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~ 85 (238)
++.|+|+.+.-|=|-.- ++.+.-+=+++.-|| -|.+|=||+- - +=-.+-|+.+..
T Consensus 89 ~n~i~i~gq~Al~NySt-sq~i~R~g~es~~pN~VLl~TIlNp~--Y-pItvDVly~Icn-------------------- 144 (494)
T KOG1456|consen 89 DNQIYIAGQQALFNYST-SQCIERPGDESATPNKVLLFTILNPQ--Y-PITVDVLYTICN-------------------- 144 (494)
T ss_pred cCcccccCchhhcccch-hhhhccCCCCCCCCCeEEEEEeecCc--c-ccchhhhhhhcC--------------------
Confidence 34556655444333221 122222323345566 7788888862 1 122345565544
Q ss_pred HHhhhhcCCceEEEecCCCC-eEEEEeCCHHHHHHHHHHhcCCccCCc--ceEEEEeCC
Q psy258 86 ETLLSQFGKPKSFQYLKSFR-RMRVNYESSAAAAKARINLHQSVFASS--KINVYFVQP 141 (238)
Q Consensus 86 ~~~~~~~~~iv~fv~LkSF~-RiiVVF~~~eaA~~Ar~~L~~~~f~g~--~lrIyFAq~ 141 (238)
..|.+..++.+|+-+ |+.|-|++.++|++||..|.|.+++.- .++|-||++
T Consensus 145 -----p~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 145 -----PQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred -----CCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 557777888888775 999999999999999999999998763 578999987
No 63
>KOG0131|consensus
Probab=93.37 E-value=0.12 Score=45.53 Aligned_cols=72 Identities=18% Similarity=0.121 Sum_probs=54.8
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~ 112 (238)
.||||+||++++-+ +.|..||- +-|+++.+..=|- -|=.+|-|.
T Consensus 10 ~tiyvgnld~kvs~-----~~l~EL~i-------------------------qagpVv~i~iPkDrv~~~~qGygF~Ef~ 59 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSE-----ELLYELFI-------------------------QAGPVVNLHIPKDRVTQKHQGYGFAEFR 59 (203)
T ss_pred ceEEEecCCHHHHH-----HHHHHHHH-------------------------hcCceeeeecchhhhcccccceeEEEEe
Confidence 69999999885443 45677777 4456665544332 255899999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
+.++|.-|-..|....++|+++|+.-+.
T Consensus 60 ~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 60 TEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred chhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 9999999999999999999988776654
No 64
>KOG0151|consensus
Probab=93.34 E-value=0.41 Score=49.52 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=57.6
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-----C--e--EEE
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-----R--R--MRV 109 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-----~--R--iiV 109 (238)
+-||+-|||++|-+ +.|. .-|. .||++++...+=-. + | -+|
T Consensus 175 TNlyv~Nlnpsv~E-~~ll----~tfG-------------------------rfgPlasvKimwpRtEeEk~r~r~cgfv 224 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDE-NFLL----RTFG-------------------------RFGPLASVKIMWPRTEEEKRRERNCGFV 224 (877)
T ss_pred cceeeecCCccccH-HHHH----HHhc-------------------------ccCcccceeeecccchhhhcccccccee
Confidence 47999999998877 3333 2344 56777776654222 1 2 789
Q ss_pred EeCCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 110 NYESSAAAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
.|-+..+|.+|+..|++...++..|++.||+.+.
T Consensus 225 afmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 225 AFMNRADAERALKELQGIIVMEYEMKLGWGKAVP 258 (877)
T ss_pred eehhhhhHHHHHHHhcceeeeeeeeeeccccccc
Confidence 9999999999999999999999999999998743
No 65
>KOG0144|consensus
Probab=92.98 E-value=0.24 Score=48.61 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=41.4
Q ss_pred hhcCCceEEEecCCC------CeEEEEeCCHHHHHHHHHHhcCC-ccCC--cceEEEEeCC
Q psy258 90 SQFGKPKSFQYLKSF------RRMRVNYESSAAAAKARINLHQS-VFAS--SKINVYFVQP 141 (238)
Q Consensus 90 ~~~~~iv~fv~LkSF------~RiiVVF~~~eaA~~Ar~~L~~~-~f~g--~~lrIyFAq~ 141 (238)
+.||.+.++..+|-. |=++|.|.+.++|.+|...||+. .|.| .++++-||..
T Consensus 56 e~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 56 EKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADG 116 (510)
T ss_pred HHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccch
Confidence 366778888888844 56999999999999999999994 2433 5788888865
No 66
>KOG0131|consensus
Probab=92.85 E-value=0.34 Score=42.77 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=57.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe-cCCCCeEEEEeCCHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY-LKSFRRMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~-LkSF~RiiVVF~~~ea 116 (238)
..-|+|-||... -..+.|+.+||.||.++ .--.+.-... -++-+=.+|+|.+-++
T Consensus 96 ganlfvgNLd~~-----vDe~~L~dtFsafG~l~-------------------~~P~i~rd~~tg~~~~~g~i~~~sfea 151 (203)
T KOG0131|consen 96 GANLFVGNLDPE-----VDEKLLYDTFSAFGVLI-------------------SPPKIMRDPDTGNPKGFGFINYASFEA 151 (203)
T ss_pred cccccccccCcc-----hhHHHHHHHHHhccccc-------------------cCCcccccccCCCCCCCeEEechhHHH
Confidence 356889999762 23457899999888765 2112222222 1223457999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+|...+.+.-+...+++++|+..
T Consensus 152 sd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 152 SDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHHHHHhccchhcCCceEEEEEEe
Confidence 9999999999988888999999865
No 67
>KOG0127|consensus
Probab=92.78 E-value=0.27 Score=49.56 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCC-ceEEEecCCCCeEEEEeCCHH
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGK-PKSFQYLKSFRRMRVNYESSA 115 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-iv~fv~LkSF~RiiVVF~~~e 115 (238)
.-.|++|.||+=+ .-.+.|..+|++||.+- |.- +..=..=.+.|+++|-|.+..
T Consensus 291 ~~~tVFvRNL~fD-----~tEEel~~~fskFG~v~--------------------ya~iV~~k~T~~skGtAFv~Fkt~~ 345 (678)
T KOG0127|consen 291 EGKTVFVRNLPFD-----TTEEELKEHFSKFGEVK--------------------YAIIVKDKDTGHSKGTAFVKFKTQI 345 (678)
T ss_pred ccceEEEecCCcc-----ccHHHHHHHHHhhccce--------------------eEEEEeccCCCCcccceEEEeccHH
Confidence 3459999999853 34567889999999864 221 223334457899999999999
Q ss_pred HHHHHHHHhc-----C-CccCCcceEEEEeCC
Q psy258 116 AAAKARINLH-----Q-SVFASSKINVYFVQP 141 (238)
Q Consensus 116 aA~~Ar~~L~-----~-~~f~g~~lrIyFAq~ 141 (238)
+|+++..... + +.+.|..++|.-|-.
T Consensus 346 ~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 346 AAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred HHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 9999988773 2 335566677777643
No 68
>KOG0147|consensus
Probab=92.71 E-value=0.36 Score=48.30 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=55.5
Q ss_pred hHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 79 DALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 79 ~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
+.|++.+.+-+++||.++++..=|.= |.+.|-|++.++|..|-..|||-.|.|+.|...|-.
T Consensus 464 ~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 464 QEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred hHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 67888888888999999998887755 999999999999999999999999999888888843
No 69
>KOG0127|consensus
Probab=92.49 E-value=0.49 Score=47.74 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=60.9
Q ss_pred CCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-----CeEEE
Q psy258 36 QLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-----RRMRV 109 (238)
Q Consensus 36 ~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-----~RiiV 109 (238)
++|. -|||.|||=++.. +. |..+|++||+ ++++..=+.+ |=++|
T Consensus 114 ~~~k~rLIIRNLPf~~k~-~d----Lk~vFs~~G~-------------------------V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKK-PD----LKNVFSNFGK-------------------------VVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred cCccceEEeecCCcccCc-HH----HHHHHhhcce-------------------------EEEEEcccCCCCCccceEEE
Confidence 4454 8999999977777 34 4578997766 4444443444 56899
Q ss_pred EeCCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 110 NYESSAAAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
-|-...+|..|+..+.+..+.|.++-+-||-.+.
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 9999999999999999999999999999986633
No 70
>KOG0121|consensus
Probab=92.24 E-value=0.39 Score=40.44 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=53.8
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEE-ecCCC-----CeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQ-YLKSF-----RRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv-~LkSF-----~RiiVVF 111 (238)
..||||-||+-. . --++++.||+.-|.|. .++ -|-.| |=.+|.|
T Consensus 36 S~tvyVgNlSfy--t---tEEqiyELFs~cG~ir-------------------------riiMGLdr~kktpCGFCFVey 85 (153)
T KOG0121|consen 36 SCTVYVGNLSFY--T---TEEQIYELFSKCGDIR-------------------------RIIMGLDRFKKTPCGFCFVEY 85 (153)
T ss_pred cceEEEeeeeee--e---cHHHHHHHHHhccchh-------------------------eeEeccccCCcCccceEEEEE
Confidence 579999999643 2 3468999999666543 211 23333 5699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEE
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYF 138 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyF 138 (238)
.+.++|..|++.+.++-+-+++|++-+
T Consensus 86 y~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 86 YSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred ecchhHHHHHHHhccCcccccceeeec
Confidence 999999999999999999888888765
No 71
>KOG4206|consensus
Probab=90.56 E-value=1.1 Score=40.35 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=54.1
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHHHH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAAAA 118 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~eaA~ 118 (238)
+|++||+|++ .-.+.++.+|.||+ -.=+...+..- +-++|-|.+...|.
T Consensus 148 ilf~~niP~e-----s~~e~l~~lf~qf~-------------------------g~keir~i~~~~~iAfve~~~d~~a~ 197 (221)
T KOG4206|consen 148 ILFLTNIPSE-----SESEMLSDLFEQFP-------------------------GFKEIRLIPPRSGIAFVEFLSDRQAS 197 (221)
T ss_pred EEEEecCCcc-----hhHHHHHHHHhhCc-------------------------ccceeEeccCCCceeEEecchhhhhH
Confidence 9999999973 45567788888663 33344455533 57999999999999
Q ss_pred HHHHHhcCCccC-CcceEEEEeC
Q psy258 119 KARINLHQSVFA-SSKINVYFVQ 140 (238)
Q Consensus 119 ~Ar~~L~~~~f~-g~~lrIyFAq 140 (238)
.|++.++++-+- ...|+|.|++
T Consensus 198 ~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 198 AAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhhhccceeccCceEEecccC
Confidence 999999998665 5678888875
No 72
>KOG0117|consensus
Probab=90.46 E-value=1.2 Score=43.86 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=57.3
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeCC
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYES 113 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~~ 113 (238)
-++|-.||.++|+ ++|. -||. +.|++.++.-+.- .|=++|.|.+
T Consensus 85 EVfvGkIPrD~~E-deLv----plfE-------------------------kiG~I~elRLMmD~~sG~nRGYAFVtf~~ 134 (506)
T KOG0117|consen 85 EVFVGKIPRDVFE-DELV----PLFE-------------------------KIGKIYELRLMMDPFSGDNRGYAFVTFCT 134 (506)
T ss_pred eEEecCCCccccc-hhhH----HHHH-------------------------hccceeeEEEeecccCCCCcceEEEEeec
Confidence 7899999999999 5666 3444 6678888887764 3669999999
Q ss_pred HHHHHHHHHHhcCCccC-CcceEEEEeCC
Q psy258 114 SAAAAKARINLHQSVFA-SSKINVYFVQP 141 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~-g~~lrIyFAq~ 141 (238)
-+.|++|-+.|++..|. |+.|+|.-+..
T Consensus 135 Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 135 KEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred HHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 99999999999998764 67777777644
No 73
>KOG0149|consensus
Probab=90.41 E-value=0.25 Score=44.88 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=45.1
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
+-++|-+|.= +.-++.|+..|.|||.|+ .=-=+.+-..-||.|=-+|.|.|.++|+
T Consensus 13 TKifVggL~w-----~T~~~~l~~yFeqfGeI~-------------------eavvitd~~t~rskGyGfVTf~d~~aa~ 68 (247)
T KOG0149|consen 13 TKIFVGGLAW-----ETHKETLRRYFEQFGEIV-------------------EAVVITDKNTGRSKGYGFVTFRDAEAAT 68 (247)
T ss_pred EEEEEcCccc-----ccchHHHHHHHHHhCceE-------------------EEEEEeccCCccccceeeEEeecHHHHH
Confidence 3567777763 245678888888776655 0001223334567788999999999998
Q ss_pred HHHHHhcCCccCCcceEE
Q psy258 119 KARINLHQSVFASSKINV 136 (238)
Q Consensus 119 ~Ar~~L~~~~f~g~~lrI 136 (238)
+|-.--.-. +.|.+-+|
T Consensus 69 rAc~dp~pi-IdGR~aNc 85 (247)
T KOG0149|consen 69 RACKDPNPI-IDGRKANC 85 (247)
T ss_pred HHhcCCCCc-cccccccc
Confidence 865432222 55554343
No 74
>KOG0113|consensus
Probab=90.23 E-value=0.84 Score=42.97 Aligned_cols=77 Identities=18% Similarity=0.152 Sum_probs=60.8
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
.||+|.-||-...+ . .|+..|+.||.|. ..-=+...+.=|+.|=++|+|.+..+-.
T Consensus 102 ~TLFv~RLnydT~E-s----kLrreF~~YG~Ik-------------------rirlV~d~vTgkskGYAFIeye~erdm~ 157 (335)
T KOG0113|consen 102 KTLFVARLNYDTSE-S----KLRREFEKYGPIK-------------------RIRLVRDKVTGKSKGYAFIEYEHERDMK 157 (335)
T ss_pred ceeeeeeccccccH-H----HHHHHHHhcCcce-------------------eEEEeeecccCCccceEEEEeccHHHHH
Confidence 49999999975554 3 3556677788875 2233445677789999999999999999
Q ss_pred HHHHHhcCCccCCcceEEEEe
Q psy258 119 KARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 119 ~Ar~~L~~~~f~g~~lrIyFA 139 (238)
.|-...++..+.|..|-|-|-
T Consensus 158 ~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 158 AAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred HHHHhccCceecCcEEEEEec
Confidence 999999999999988877774
No 75
>KOG0109|consensus
Probab=89.49 E-value=0.74 Score=43.32 Aligned_cols=104 Identities=26% Similarity=0.326 Sum_probs=72.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
|--|+|-||+++. -..+|++||.|||| +++.-..|++| +|--++.++|
T Consensus 2 ~~KLFIGNLp~~~-----~~~elr~lFe~ygk-------------------------VlECDIvKNYg--FVHiEdktaa 49 (346)
T KOG0109|consen 2 PVKLFIGNLPREA-----TEQELRSLFEQYGK-------------------------VLECDIVKNYG--FVHIEDKTAA 49 (346)
T ss_pred ccchhccCCCccc-----chHHHHHHHHhhCc-------------------------eEeeeeecccc--eEEeeccccc
Confidence 4568999999853 33467788886666 66777788887 5666888899
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCCCCCCCCCCccCCCCCCcceeeCCCCCCCCCCCCCCCCCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPL 182 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~~~~~L~~P~~~K~FLISPP~SPP~gWe~~~E~~P~ 182 (238)
.-|.+-||+.-++|..++|--+++++. ....|-++. |||=.--+.=-..-++-+|+
T Consensus 50 edairNLhgYtLhg~nInVeaSksKsk---~stkl~vgN------is~tctn~ElRa~fe~ygpv 105 (346)
T KOG0109|consen 50 EDAIRNLHGYTLHGVNINVEASKSKSK---ASTKLHVGN------ISPTCTNQELRAKFEKYGPV 105 (346)
T ss_pred HHHHhhcccceecceEEEEEeccccCC---CccccccCC------CCccccCHHHhhhhcccCCc
Confidence 999999999999999999999887543 233454544 66655444322223455664
No 76
>KOG0144|consensus
Probab=88.89 E-value=0.84 Score=44.91 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=53.7
Q ss_pred HHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCCHHHHHHHHHHhcCCc-cCC--cceEEEEeCCCCC
Q psy258 82 KEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYESSAAAAKARINLHQSV-FAS--SKINVYFVQPMTP 144 (238)
Q Consensus 82 ~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~~eaA~~Ar~~L~~~~-f~g--~~lrIyFAq~~t~ 144 (238)
...++++|++||.|-+...|| |.|=++|.|.+.+.|..|...|++.. +.| .+|-|-||.+.-+
T Consensus 138 e~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 138 ENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred HHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 346899999999999999998 66779999999999999999999964 444 5899999987554
No 77
>KOG4212|consensus
Probab=88.71 E-value=1 Score=44.61 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=31.2
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q psy258 101 LKSFRRMRVNYESSAAAAKARINLHQSVFASSKINV 136 (238)
Q Consensus 101 LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrI 136 (238)
=|+.+=++|-|.+++.+++|...|+++.++|.++.+
T Consensus 83 GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 83 GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 367788999999999999999999999998865543
No 78
>KOG1855|consensus
Probab=87.91 E-value=0.65 Score=45.57 Aligned_cols=71 Identities=27% Similarity=0.344 Sum_probs=46.1
Q ss_pred CCCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCC---ceEEEecCC-------
Q psy258 35 EQLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGK---PKSFQYLKS------- 103 (238)
Q Consensus 35 ~~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---iv~fv~LkS------- 103 (238)
+.||. ||.++||++ +..-+.|..||+-+|.|. .|+.-.+ .....-.++
T Consensus 227 eel~srtivaenLP~-----Dh~~enl~kiFg~~G~Ik----------------sIRIckPgaip~d~r~~~~~~~~~~t 285 (484)
T KOG1855|consen 227 EELPSRTIVAENLPL-----DHSYENLSKIFGTVGSIK----------------SIRICKPGAIPEDVRGFPKKYFELQT 285 (484)
T ss_pred cccccceEEEecCCc-----chHHHHHHHHhhccccee----------------eeeecCCCCCCcccccCCccchhhhh
Confidence 45665 999999998 344467888899665543 1111122 112222222
Q ss_pred CCeEEEEeCCHHHHHHHHHHhcC
Q psy258 104 FRRMRVNYESSAAAAKARINLHQ 126 (238)
Q Consensus 104 F~RiiVVF~~~eaA~~Ar~~L~~ 126 (238)
--+++|-|+..++|..|+..+..
T Consensus 286 k~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 286 KECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred hhhhhhhhhhhHHHHHHHHhhch
Confidence 23689999999999999999854
No 79
>KOG0145|consensus
Probab=87.48 E-value=2.7 Score=39.31 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=57.6
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC------CeEEEEeCC
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF------RRMRVNYES 113 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF------~RiiVVF~~ 113 (238)
.|+|-||.+ +.....|-.||.+| |.+.....+|-| |=.+|...+
T Consensus 280 ciFvYNLsp-----d~de~~LWQlFgpF-------------------------GAv~nVKvirD~ttnkCKGfgFVtMtN 329 (360)
T KOG0145|consen 280 CIFVYNLSP-----DADESILWQLFGPF-------------------------GAVTNVKVIRDFTTNKCKGFGFVTMTN 329 (360)
T ss_pred EEEEEecCC-----CchHhHHHHHhCcc-------------------------cceeeEEEEecCCcccccceeEEEecc
Confidence 899999986 34445677888866 556666666666 468999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
-+.|..|.+.|.|.-+.++.++|.|-.
T Consensus 330 YdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 330 YDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred hHHHHHHHHHhcCccccceEEEEEEec
Confidence 999999999999999999999999943
No 80
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=86.47 E-value=2.3 Score=29.52 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=22.3
Q ss_pred hcCCceEEEecCCCCeEEEEeCCHHHHHHHH
Q psy258 91 QFGKPKSFQYLKSFRRMRVNYESSAAAAKAR 121 (238)
Q Consensus 91 ~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar 121 (238)
++|+++....=.+-..+.|.|.+..+|.+|.
T Consensus 23 ~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 23 SFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred hcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 3355555444456778999999999999873
No 81
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.26 E-value=4 Score=34.99 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=38.1
Q ss_pred hhhcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 89 LSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 89 ~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
++.||++-+... =..+.++|||.|..+|.+|....+. --.|+.++|.+-+
T Consensus 111 Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 111 LSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred HHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 457788776654 3456799999999999999999987 3456677777744
No 82
>KOG0120|consensus
Probab=85.33 E-value=2.6 Score=42.17 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=45.5
Q ss_pred HHHHHHHhhhhcCCceEEEecCC---------CCeEEEEeCCHHHHHHHHHHhcCCccCCcceE-EEE
Q psy258 81 LKEQIETLLSQFGKPKSFQYLKS---------FRRMRVNYESSAAAAKARINLHQSVFASSKIN-VYF 138 (238)
Q Consensus 81 ~~~~~~~~~~~~~~iv~fv~LkS---------F~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lr-IyF 138 (238)
|.+.++.-++.||.+..+..=+. -|.|+|-|.+.++|++|+..|.|-.|.+..+. .||
T Consensus 422 IlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 422 ILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 44556666677887777765554 38999999999999999999999999987544 455
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.12 E-value=2.4 Score=40.84 Aligned_cols=76 Identities=17% Similarity=0.323 Sum_probs=55.3
Q ss_pred CcEEEecCCCCCCCCh---HHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---------CCCe
Q psy258 39 KSLIITNLNPDLFKDD---ALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---------SFRR 106 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~---~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---------SF~R 106 (238)
|-.||.-|++++=..+ .|+. ...|.|||||. .++.=| +.--
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~--~eyFGQyGkI~-------------------------KIvvNkkt~s~nst~~h~g 167 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKR--HEYFGQYGKIK-------------------------KIVVNKKTSSLNSTASHAG 167 (480)
T ss_pred ceeEEecCCCCCCcccccccccc--hhhhhhcccee-------------------------EEEecccccccccccccce
Confidence 3578889998876633 2332 35689888864 222111 1234
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 107 MRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 107 iiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.|.|.+-++|.++..+.+|..+-|+.++..||-.
T Consensus 168 vYITy~~kedAarcIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 168 VYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred EEEEecchHHHHHHHHHhccccccCceEeeecCch
Confidence 68999999999999999999999999999999754
No 84
>KOG1457|consensus
Probab=84.82 E-value=0.82 Score=41.72 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=41.7
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAK 119 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~ 119 (238)
||+|.||...+=+ |+|| .||+.|... .++.+..--.+--+++-|++.+-|+.
T Consensus 212 tlfianl~~~~~e-d~l~----~~~~~~~gf-----------------------~~l~~~~~~g~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 212 TLFIANLGPNCTE-DELK----QLLSRYPGF-----------------------HILKIRARGGMPVAFADFEEIEQATD 263 (284)
T ss_pred hHhhhccCCCCCH-HHHH----HHHHhCCCc-----------------------eEEEEecCCCcceEeecHHHHHHHHH
Confidence 8999999887766 4444 566644110 12222222223348889999999999
Q ss_pred HHHHhcCCccC
Q psy258 120 ARINLHQSVFA 130 (238)
Q Consensus 120 Ar~~L~~~~f~ 130 (238)
||..|||+.+-
T Consensus 264 am~~lqg~~~s 274 (284)
T KOG1457|consen 264 AMNHLQGNLLS 274 (284)
T ss_pred HHHHhhcceec
Confidence 99999998653
No 85
>KOG0106|consensus
Probab=81.17 E-value=1.3 Score=39.64 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=46.6
Q ss_pred chhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 72 SFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
.+++.++...-+.+++.+..+|.+ ..+.+ +-+..+|-|...++|..|...|++..+++..+.+++.
T Consensus 103 ~~~~~~~r~~~qdl~d~~~~~g~~-~~~~~-~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 103 IVRNLSLRVSWQDLKDHFRPAGEV-TYVDA-RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred eeccchhhhhHHHHhhhhcccCCC-chhhh-hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 344444444334444444466666 33333 6778999999999999999999999999988888664
No 86
>KOG1548|consensus
Probab=80.35 E-value=3.2 Score=39.84 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=58.7
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe---cCCCCeEEEEeCCHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY---LKSFRRMRVNYESSA 115 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~---LkSF~RiiVVF~~~e 115 (238)
+.+||.|||.+|=. +++..+|+.+|-|. +. +.+--+.+.+-. -+--|-++|.|-..+
T Consensus 135 t~VYVsgLP~DiT~-----dE~~~~~sKcGiI~-----------~d----~~t~epk~KlYrd~~G~lKGDaLc~y~K~E 194 (382)
T KOG1548|consen 135 TSVYVSGLPLDITV-----DEFAEVMSKCGIIM-----------RD----PQTGEPKVKLYRDNQGKLKGDALCCYIKRE 194 (382)
T ss_pred ceEEecCCCCcccH-----HHHHHHHHhcceEe-----------cc----CCCCCeeEEEEecCCCCccCceEEEeeccc
Confidence 35999999986543 57778888777653 00 001111111111 112267899999999
Q ss_pred HHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 116 AAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
+-..|..+|++..|.|..|||.-|+...
T Consensus 195 SVeLA~~ilDe~~~rg~~~rVerAkfq~ 222 (382)
T KOG1548|consen 195 SVELAIKILDEDELRGKKLRVERAKFQM 222 (382)
T ss_pred HHHHHHHHhCcccccCcEEEEehhhhhh
Confidence 9999999999999999999999987633
No 87
>KOG1996|consensus
Probab=80.34 E-value=4.7 Score=38.23 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=40.5
Q ss_pred HHHhhhhcCCceEEEec--CCC-----CeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEE
Q psy258 85 IETLLSQFGKPKSFQYL--KSF-----RRMRVNYESSAAAAKARINLHQSVFASSKINVYF 138 (238)
Q Consensus 85 ~~~~~~~~~~iv~fv~L--kSF-----~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyF 138 (238)
+.+-+++||.+...+.+ +++ -||+|-|+..+.|++|...|+|--|+|...+-.|
T Consensus 303 ~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 303 TKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 33444466655543332 666 5999999999999999999999989998777665
No 88
>KOG0126|consensus
Probab=79.46 E-value=0.24 Score=43.86 Aligned_cols=70 Identities=24% Similarity=0.225 Sum_probs=53.6
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~ 112 (238)
--+||-|||-.+-+.| +-++|||||. ++.+... ||-|=+++-|+
T Consensus 36 A~Iyiggl~~~LtEgD-----il~VFSqyGe-------------------------~vdinLiRDk~TGKSKGFaFLcYE 85 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGD-----ILCVFSQYGE-------------------------IVDINLIRDKKTGKSKGFAFLCYE 85 (219)
T ss_pred eEEEECCCcccccCCc-----EEEEeeccCc-------------------------eEEEEEEecCCCCcccceEEEEec
Confidence 3689999997776632 3357886655 4444443 47788999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEE
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYF 138 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyF 138 (238)
+..+-+.|..-+.|+-+.|..+||--
T Consensus 86 DQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 86 DQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred CccceEEEEeccCCceecceeEEeee
Confidence 99999999999999999998888743
No 89
>KOG4574|consensus
Probab=79.33 E-value=1.7 Score=45.87 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=48.5
Q ss_pred HHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCcc--CCcceEEEEeCC
Q psy258 85 IETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVF--ASSKINVYFVQP 141 (238)
Q Consensus 85 ~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f--~g~~lrIyFAq~ 141 (238)
+-.+++.||.+.+...|+.|.-++|.|.+.+.|..|+..+||.+. .|.+-||.||+.
T Consensus 315 L~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 315 LATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred HHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 344455778888999999999999999999999999999999653 456899999977
No 90
>KOG1456|consensus
Probab=79.25 E-value=8.6 Score=37.61 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=46.5
Q ss_pred hcCCceEEEecCCC-CeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 91 QFGKPKSFQYLKSF-RRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 91 ~~~~iv~fv~LkSF-~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.||++..+..+|+. +-++|-.-|..+-.+|...|++.+++|..++|.+++.
T Consensus 311 lYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 311 LYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred hcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 66778889999987 8999999999999999999999999999999999865
No 91
>KOG0106|consensus
Probab=79.00 E-value=3 Score=37.40 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=37.7
Q ss_pred hcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 91 QFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 91 ~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
.|+.+..+.-...|+ +|.|++..+|.-|.-.+++..|.+..+.+-++.
T Consensus 24 ~yg~~~d~~mk~gf~--fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 24 GYGKIPDADMKNGFG--FVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred hccccccceeecccc--eeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 455566666667777 889999999999999999999998765555544
No 92
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=78.17 E-value=3.6 Score=32.46 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=27.0
Q ss_pred HHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCC
Q psy258 82 KEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQS 127 (238)
Q Consensus 82 ~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~ 127 (238)
|+.|+++|+.|+.+.=+-+.+.-.-.+|-|.+.++|+.|...+...
T Consensus 15 re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 15 REDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 4444445556675555566667789999999999999999877665
No 93
>KOG4661|consensus
Probab=78.06 E-value=4.6 Score=41.39 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=52.8
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC-e--EEEEeCCH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR-R--MRVNYESS 114 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~-R--iiVVF~~~ 114 (238)
.-.|.|.-|..- .-..-|.+||+.||||+ |.-| +..-++-| | =+|...+.
T Consensus 405 gRNlWVSGLSst-----TRAtDLKnlFSKyGKVv---------------------GAKV-VTNaRsPGaRCYGfVTMSts 457 (940)
T KOG4661|consen 405 GRNLWVSGLSST-----TRATDLKNLFSKYGKVV---------------------GAKV-VTNARSPGARCYGFVTMSTS 457 (940)
T ss_pred ccceeeeccccc-----hhhhHHHHHHHHhccee---------------------ceee-eecCCCCCcceeEEEEecch
Confidence 335677777531 11234778999888865 2111 12233333 3 47999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.|+++...||.+.+.|..|.|--+++
T Consensus 458 ~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 458 AEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred HHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 999999999999999998888887765
No 94
>KOG2416|consensus
Probab=76.92 E-value=2.7 Score=43.00 Aligned_cols=75 Identities=28% Similarity=0.375 Sum_probs=51.3
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHH
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSA 115 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~e 115 (238)
..|.|+|+||=. =|.--+|+ .|... +-|.+.+| ++-.. .-++|.|.+.+
T Consensus 443 ~SnvlhI~nLvR-PFTlgQLk----elL~r------------------------tgg~Vee~-WmDkIKShCyV~yss~e 492 (718)
T KOG2416|consen 443 PSNVLHIDNLVR-PFTLGQLK----ELLGR------------------------TGGNVEEF-WMDKIKSHCYVSYSSVE 492 (718)
T ss_pred ccceEeeecccc-cchHHHHH----HHHhh------------------------ccCchHHH-HHHHhhcceeEecccHH
Confidence 346999999964 36523333 33331 33444455 44333 46899999999
Q ss_pred HHHHHHHHhcCCccC---CcceEEEEeCC
Q psy258 116 AAAKARINLHQSVFA---SSKINVYFVQP 141 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~---g~~lrIyFAq~ 141 (238)
.|.+.|..||+..|- ++.|.+-|+..
T Consensus 493 EA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 493 EAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred HHHHHHHHHhccccCCCCCceeEeeecch
Confidence 999999999998774 46788888754
No 95
>KOG0147|consensus
Probab=76.76 E-value=3.5 Score=41.47 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=52.0
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHHH
Q psy258 41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKA 120 (238)
Q Consensus 41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~A 120 (238)
||+-||+-.+-. +.++.+|..||+|- ...-...-..=.+-|--+|.|.+.+.|.+|
T Consensus 281 l~vgnLHfNite-----~~lr~ifepfg~Ie-------------------~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 281 LYVGNLHFNITE-----DMLRGIFEPFGKIE-------------------NVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred hhhcccccCchH-----HHHhhhccCcccce-------------------eeeeccccccccccCcceEEEecHHHHHHH
Confidence 899999864433 34678888888863 111111111223445567889999999999
Q ss_pred HHHhcCCccCCcceEEEEe
Q psy258 121 RINLHQSVFASSKINVYFV 139 (238)
Q Consensus 121 r~~L~~~~f~g~~lrIyFA 139 (238)
...|.++.+-|..|+|.-.
T Consensus 337 ~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 337 LEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred HHHhccceecCceEEEEEe
Confidence 9999999999988876653
No 96
>KOG4208|consensus
Probab=76.50 E-value=9.4 Score=34.27 Aligned_cols=102 Identities=15% Similarity=0.247 Sum_probs=67.3
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~ 112 (238)
.-+|+-.++--+|+ .++...|+|||. .+..|+.-|+ -+=++|-|+
T Consensus 50 g~~~~~~~p~g~~e-----~~~~~~~~q~~g------------------------~v~r~rlsRnkrTGNSKgYAFVEFE 100 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFE-----TEILNYFRQFGG------------------------TVTRFRLSRNKRTGNSKGYAFVEFE 100 (214)
T ss_pred cceeecccccchhH-----HHHhhhhhhcCC------------------------eeEEEEeecccccCCcCceEEEEec
Confidence 35677777766666 356677887743 2334443343 457999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCCCCCCC-CCCCccCCCCCCcceeeCCCCCCCCCCCCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQPMTPFD-SADQHLQPPAPTKQFLISPPSSPPVGWEPR 176 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~-~~~~~L~~P~~~K~FLISPP~SPP~gWe~~ 176 (238)
+.+.|.-|-..|++.-|+++-+.|.|-.+-..+. ........|. -|..+.+..|.+-
T Consensus 101 s~eVA~IaAETMNNYLl~e~lL~c~vmppe~~v~~~~~k~~~~~~-------~~~~~~~~k~~~~ 158 (214)
T KOG4208|consen 101 SEEVAKIAAETMNNYLLMEHLLECHVMPPEQKVEKNLKKVSGTPF-------KPGKTVPIKRLQD 158 (214)
T ss_pred cHHHHHHHHHHhhhhhhhhheeeeEEeCchhhhhhhhhhhcCCcC-------CCCCcccccccCc
Confidence 9999999999999999999999999966521221 1223333333 3455666677663
No 97
>KOG0116|consensus
Probab=74.27 E-value=7.4 Score=38.11 Aligned_cols=73 Identities=25% Similarity=0.222 Sum_probs=45.4
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe--cCCCCeEEEEeCC
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY--LKSFRRMRVNYES 113 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~--LkSF~RiiVVF~~ 113 (238)
....+|++-|||.. ...+.|++.|.+||.|. -.-+.... -++.-=.+|.|.+
T Consensus 286 ~~~~~i~V~nlP~d-----a~~~~l~~~Fk~FG~Ik---------------------~~~I~vr~~~~~~~~fgFV~f~~ 339 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPD-----ATPAELEEVFKQFGPIK---------------------EGGIQVRSPGGKNPCFGFVEFEN 339 (419)
T ss_pred ecccceEeecCCCC-----CCHHHHHHHHhhccccc---------------------ccceEEeccCCCcCceEEEEEee
Confidence 34567999999974 44456889999999876 12222222 3333335888998
Q ss_pred HHHHHHHHHHhcCCccCCcceE
Q psy258 114 SAAAAKARINLHQSVFASSKIN 135 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lr 135 (238)
..++.+|...- -..+++..++
T Consensus 340 ~~~~~~~i~As-p~~ig~~kl~ 360 (419)
T KOG0116|consen 340 AAAVQNAIEAS-PLEIGGRKLN 360 (419)
T ss_pred cchhhhhhhcC-ccccCCeeEE
Confidence 88888776554 3334444433
No 98
>KOG0112|consensus
Probab=72.15 E-value=6.5 Score=41.89 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=47.6
Q ss_pred HHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCccCC--cceEEEEeCCCC
Q psy258 85 IETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFAS--SKINVYFVQPMT 143 (238)
Q Consensus 85 ~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g--~~lrIyFAq~~t 143 (238)
....|..||++-.+-|=+.=--+-|.|++..+|+.|...|.+++|++ +++++-|+...+
T Consensus 472 l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 472 LNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred HHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 55666777777776666655568899999999999999999999987 579999987633
No 99
>KOG1548|consensus
Probab=68.42 E-value=16 Score=35.21 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhhcCCceEEEec--CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q psy258 80 ALKEQIETLLSQFGKPKSFQYL--KSFRRMRVNYESSAAAAKARINLHQSVFASSKIN 135 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~iv~fv~L--kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lr 135 (238)
-|++.+++-++.||.+-.++.. .-=|=+-|+|.+.+.|..+-+.|+|--|.|..+.
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~ 345 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLT 345 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEE
Confidence 4566788888899999999888 4558899999999999999999999888876554
No 100
>KOG3152|consensus
Probab=66.93 E-value=4.8 Score=37.28 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=59.1
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCC--cchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKP--KSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
-+|+.|+|+. +.+ ..|+.+|++||.| +-+||+......+.-+ -...+=+.|.-=||-|.+-..|
T Consensus 76 VvylS~IPp~-m~~----~rlReil~~yGeVGRvylqpE~~s~~~~r~~---------~~~n~~~~y~EGWvEF~~KrvA 141 (278)
T KOG3152|consen 76 VVYLSNIPPY-MDP----VRLREILSQYGEVGRVYLQPEDDSKRAARKR---------KGGNYKKLYSEGWVEFISKRVA 141 (278)
T ss_pred EEEeccCCCc-cCH----HHHHHHHHhccccceEEecchhhHHHHHHhh---------cCCCccccchhHHHHHHHHHHH
Confidence 5899999875 443 2466788899998 6678888766554443 1223334555678999999999
Q ss_pred HHHHHHhcCCccCCcc
Q psy258 118 AKARINLHQSVFASSK 133 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~ 133 (238)
.++-..|++.+++|+.
T Consensus 142 K~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 142 KRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHhCCCccCCCC
Confidence 9999999999999854
No 101
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=66.66 E-value=30 Score=25.22 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=37.1
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
-|++|.|.-|++ +..++++.-+..+|.. .-..-++|+-= ..+-|||.+.+.
T Consensus 4 rpeavhirGvd~--lsT~dI~~y~~~y~~~------------------------~~~~~IEWIdD---tScNvvf~d~~~ 54 (62)
T PF10309_consen 4 RPEAVHIRGVDE--LSTDDIKAYFSEYFDE------------------------EGPFRIEWIDD---TSCNVVFKDEET 54 (62)
T ss_pred eeceEEEEcCCC--CCHHHHHHHHHHhccc------------------------CCCceEEEecC---CcEEEEECCHHH
Confidence 478999999865 3335566444443220 01123455432 468999999999
Q ss_pred HHHHHHHh
Q psy258 117 AAKARINL 124 (238)
Q Consensus 117 A~~Ar~~L 124 (238)
|.+|...|
T Consensus 55 A~~AL~~L 62 (62)
T PF10309_consen 55 AARALVAL 62 (62)
T ss_pred HHHHHHcC
Confidence 99998764
No 102
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=65.18 E-value=19 Score=28.46 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=21.0
Q ss_pred CeEEEEeCCHHHHHHHHHHhcCCccCCcc
Q psy258 105 RRMRVNYESSAAAAKARINLHQSVFASSK 133 (238)
Q Consensus 105 ~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~ 133 (238)
.=+.|.|.+..+|.+|.+. +|..|.|.-
T Consensus 55 NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 55 NWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp TEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4599999999999998753 455566643
No 103
>KOG0124|consensus
Probab=64.52 E-value=10 Score=37.10 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=36.6
Q ss_pred hHHHHHHHHhhhhcCCce----EEEec--CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcc
Q psy258 79 DALKEQIETLLSQFGKPK----SFQYL--KSFRRMRVNYESSAAAAKARINLHQSVFASSK 133 (238)
Q Consensus 79 ~~~~~~~~~~~~~~~~iv----~fv~L--kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~ 133 (238)
++||.+| .-||++- +|-+. |-.+=++|-|+-+++|..|...|.+.-++|..
T Consensus 128 DtiR~AF----~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRN 184 (544)
T KOG0124|consen 128 DTIRRAF----DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 184 (544)
T ss_pred HHHHhhc----cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcc
Confidence 4454444 3677764 34333 34467999999999999999999998777643
No 104
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=63.78 E-value=7.5 Score=32.87 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=31.3
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 101 LKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 101 LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+..|.|+++++.+.++...||..++...-.|..+. |+.|.
T Consensus 106 f~~F~RVi~vv~d~e~~~~ar~~w~~~k~~~~~~~-yw~q~ 145 (154)
T PRK06646 106 IRVFKRIIIITDLPEDLKELTVKINKFTGQENKID-CFTQN 145 (154)
T ss_pred hhccCEEEEEeCChHHHHHHHHHHHHHHhCCCcce-EeccC
Confidence 56889999999999999999999988654454443 66554
No 105
>cd02325 R3H R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=62.72 E-value=40 Score=21.98 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhc-CCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEe
Q psy258 56 LKEQIETLLSQF-GKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNY 111 (238)
Q Consensus 56 l~~~l~~lF~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF 111 (238)
+...|.....+. ++.+.|+|+ ....|..+-++.+.|+ +.+.+.=..-.|.++++
T Consensus 4 ~~~~l~~f~~~~~~~~~~~~p~-~~~~R~~vH~la~~~~-L~s~s~g~~~~r~v~i~ 58 (59)
T cd02325 4 REEELEAFAKDAAGKSLELPPM-NSYERKLIHDLAEYYG-LKSESEGEGPNRRVVIT 58 (59)
T ss_pred HHHHHHHHHHhhcCCeEEcCCC-CHHHHHHHHHHHHHCC-CEEEEecCCCCcEEEEe
Confidence 445566655566 888999999 8889999999999999 66666555555665554
No 106
>KOG0146|consensus
Probab=61.54 E-value=11 Score=35.36 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=31.1
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 107 MRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 107 iiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
=+|+|+++.+|+.|.+.|.||.++=++++|+.-.+
T Consensus 330 GFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 330 GFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred eeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 38999999999999999999999888898887554
No 107
>KOG0146|consensus
Probab=60.91 E-value=30 Score=32.67 Aligned_cols=53 Identities=28% Similarity=0.308 Sum_probs=42.9
Q ss_pred hhhcCCceEEEecC-----CCCeEEEEeCCHHHHHHHHHHhcCCc-cCC--cceEEEEeCC
Q psy258 89 LSQFGKPKSFQYLK-----SFRRMRVNYESSAAAAKARINLHQSV-FAS--SKINVYFVQP 141 (238)
Q Consensus 89 ~~~~~~iv~fv~Lk-----SF~RiiVVF~~~eaA~~Ar~~L~~~~-f~g--~~lrIyFAq~ 141 (238)
|..||++-+...|+ |.|=++|-|.+..+|..|...||+.. +-| +.+-|-|+.+
T Consensus 40 f~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADT 100 (371)
T KOG0146|consen 40 FQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 100 (371)
T ss_pred hcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccc
Confidence 33778888999998 45889999999999999999999964 222 5688888765
No 108
>KOG2202|consensus
Probab=59.33 E-value=15 Score=33.98 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=49.8
Q ss_pred HHHHHhhhhcCCceEEEecCCC-----CeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 83 EQIETLLSQFGKPKSFQYLKSF-----RRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 83 ~~~~~~~~~~~~iv~fv~LkSF-----~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
..|+++-.+||++-++....+. |=|-|-|...++|++|...|.+-.|.|.++.+-|...
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 4455666689999999888866 6799999999999999999999989998888888654
No 109
>KOG0124|consensus
Probab=58.75 E-value=22 Score=34.78 Aligned_cols=55 Identities=16% Similarity=0.287 Sum_probs=40.9
Q ss_pred HHHHHHHHhhhhcCCceEEEecCCC----------CeEEEEeCCHHHHHHHHHHhcCCccCCcce
Q psy258 80 ALKEQIETLLSQFGKPKSFQYLKSF----------RRMRVNYESSAAAAKARINLHQSVFASSKI 134 (238)
Q Consensus 80 ~~~~~~~~~~~~~~~iv~fv~LkSF----------~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~l 134 (238)
.|.++|++-+.+||.++..+...-- =.|+|-|.....+.+|++.|+|-.|+|+..
T Consensus 463 ~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~V 527 (544)
T KOG0124|consen 463 DLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKV 527 (544)
T ss_pred HHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCcee
Confidence 3445666666677777766654322 369999999999999999999998888643
No 110
>KOG4454|consensus
Probab=56.39 E-value=12 Score=34.32 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=49.3
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-----CeEEEEeCC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-----RRMRVNYES 113 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-----~RiiVVF~~ 113 (238)
-||++.|+.++|-+ +.|..||- .=|+++.+. +++= +=|+|.|++
T Consensus 10 rtl~v~n~~~~v~e-----elL~Elfi-------------------------qaGPV~kv~-ip~~~d~~~kFa~v~f~~ 58 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSE-----ELLSELFI-------------------------QAGPVYKVG-IPSGQDQEQKFAYVFFPN 58 (267)
T ss_pred hHHHHHhhhhhhhH-----HHHHHHhh-------------------------ccCceEEEe-CCCCccCCCceeeeeccc
Confidence 38999999876544 23455555 445666544 4433 239999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEE
Q psy258 114 SAAAAKARINLHQSVFASSKINVYF 138 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyF 138 (238)
..+-..|..++++..+++.++++.|
T Consensus 59 E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 59 ENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred ccchhhhhhhcccchhccchhhccc
Confidence 9999999999999888776666665
No 111
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=54.13 E-value=4.7 Score=34.60 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhcCCccCCcc
Q psy258 103 SFRRMRVNYESSAAAAKARINLHQSVFASSK 133 (238)
Q Consensus 103 SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~ 133 (238)
.+.|+-|.|.+.+....-+..++|..|-+..
T Consensus 54 ~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 54 TYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 4579999999999999999999998776644
No 112
>KOG4483|consensus
Probab=41.70 E-value=61 Score=32.15 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=47.2
Q ss_pred cccccCCCCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeE
Q psy258 28 LDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRM 107 (238)
Q Consensus 28 ~~~~~~~~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~Ri 107 (238)
.+++...+|+|.-|-|-|.+..+.. ++|. .+|.+||+ -|--+.|+- -.-+
T Consensus 381 p~~ll~e~dlpHVlEIydfp~efkt-eDll----~~f~~yq~----------------------kgfdIkWvD---dtha 430 (528)
T KOG4483|consen 381 PPPLLRESDLPHVLEIYDFPDEFKT-EDLL----KAFETYQN----------------------KGFDIKWVD---DTHA 430 (528)
T ss_pred CCCCCCcccccceeEeccCchhhcc-HHHH----HHHHHhhc----------------------CCceeEEee---ccee
Confidence 4566777899999999999987776 4444 35665544 244566653 2358
Q ss_pred EEEeCCHHHHHHHHHH
Q psy258 108 RVNYESSAAAAKARIN 123 (238)
Q Consensus 108 iVVF~~~eaA~~Ar~~ 123 (238)
+-||++...|..|.-.
T Consensus 431 laVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 431 LAVFSSVNRAAEALTL 446 (528)
T ss_pred EEeecchHHHHHHhhc
Confidence 8899999999998766
No 113
>KOG2314|consensus
Probab=41.49 E-value=56 Score=33.65 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=45.3
Q ss_pred cEEEecCCC--CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-----CCCCeEEEEeC
Q psy258 40 SLIITNLNP--DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-----KSFRRMRVNYE 112 (238)
Q Consensus 40 TLiitnL~~--~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-----kSF~RiiVVF~ 112 (238)
.+.|.|.|- .... +.||..+..+|+.||| ++-+.+= ++.|=+++-|.
T Consensus 60 vVvv~g~PvV~~~rl-~klk~vl~kvfsk~gk-------------------------~vn~~~P~~e~ggtkG~lf~E~~ 113 (698)
T KOG2314|consen 60 VVVVDGAPVVGPARL-EKLKKVLTKVFSKAGK-------------------------IVNMYYPIDEEGGTKGYLFVEYA 113 (698)
T ss_pred EEEECCCcccChhHH-HHHHHHHHHHHHhhcc-------------------------ccceeeccCccCCeeeEEEEEec
Confidence 567777762 2222 4466666666665555 4444333 37789999999
Q ss_pred CHHHHHHHHHHhcCCccC
Q psy258 113 SSAAAAKARINLHQSVFA 130 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~ 130 (238)
+...|..|-..|+|..|-
T Consensus 114 ~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 114 SMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ChhhHHHHHHhcccceec
Confidence 999999999999996543
No 114
>PRK15420 fucU L-fucose mutarotase; Provisional
Probab=36.57 E-value=42 Score=28.06 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=17.0
Q ss_pred CCCCcHHHHHHHHhcCCCC
Q psy258 180 EPLVNYDLLAAIASLTPGL 198 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge 198 (238)
.|++|.||+.+|+++++|.
T Consensus 6 ~~iLnp~Ll~~La~mGHgD 24 (140)
T PRK15420 6 SPLISPELLKVLAEMGHGD 24 (140)
T ss_pred CCCcCHHHHHHHHHcCCCC
Confidence 4678999999999999977
No 115
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=36.00 E-value=46 Score=24.42 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=25.6
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q psy258 106 RMRVNYESSAAAAKARINLHQSVFASSKIN 135 (238)
Q Consensus 106 RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lr 135 (238)
=..|||.+...|.++....++..+++..|.
T Consensus 35 GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 35 GFYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred EEEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 478999999999999999999988765543
No 116
>KOG4410|consensus
Probab=35.06 E-value=49 Score=31.49 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=40.0
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
+-+++|||+.++-- .+||.+|+.+ ---.+++.+---|||+++-|.+...+.
T Consensus 331 ~di~~~nl~rd~rv-~dlk~~lr~~----------------------------~~~pm~iswkg~~~k~flh~~~~~~~~ 381 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRV-KDLKSELRKR----------------------------ECTPMSISWKGHFGKCFLHFGNRKGVP 381 (396)
T ss_pred cceeeccCccccch-HHHHHHHHhc----------------------------CCCceeEeeecCCcceeEecCCccCCC
Confidence 46999999987766 5788888873 235677888889999999999876653
No 117
>KOG4660|consensus
Probab=34.99 E-value=24 Score=35.79 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=32.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhcCCcc---CC-cceEEEEeCC
Q psy258 103 SFRRMRVNYESSAAAAKARINLHQSVF---AS-SKINVYFVQP 141 (238)
Q Consensus 103 SF~RiiVVF~~~eaA~~Ar~~L~~~~f---~g-~~lrIyFAq~ 141 (238)
..|=++|.|-+.+++....+..+|..| ++ +.+.|.||..
T Consensus 430 NvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArI 472 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARI 472 (549)
T ss_pred ccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhh
Confidence 458899999999999999999999764 43 5688999865
No 118
>PF05025 RbsD_FucU: RbsD / FucU transport protein family; InterPro: IPR007721 RbsD is a component of the ribose operon. It was originally thought to be a high affinity ribose transport protein, but further analysis [] shows that it is a D-ribose pyranase 5.5.1.n1 from EC. It catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. It also catalyzes the conversion between beta-allofuranose and beta-allopyranose. FucU is a component of the fucose operon and is a L-fucose mutarotase 5.1.3.n2 from EC, involved in the anomeric conversion of L-fucose. It also exhibits a pyranase activity for D-ribose []. Both have been classified in the RbsD/FucU family of proteins. Members of this family are ubiquitous having been found in organisms from eubacteria to mammals.; GO: 0016853 isomerase activity, 0048029 monosaccharide binding, 0005996 monosaccharide metabolic process; PDB: 2WCV_B 3E7N_N 4A34_I 1OGF_B 1OGE_A 1OGC_A 1OGD_E 3P12_C 3P13_A 3MVK_E ....
Probab=34.35 E-value=44 Score=27.79 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhcCCCC
Q psy258 180 EPLVNYDLLAAIASLTPGL 198 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge 198 (238)
.|++|.||+.+|+++++|.
T Consensus 4 ~~iLnp~L~~~La~mGHgD 22 (142)
T PF05025_consen 4 DPILNPELLKALARMGHGD 22 (142)
T ss_dssp STTS-HHHHHHHHH--TT-
T ss_pred CCccCHHHHHHHHhcCCCC
Confidence 4678999999999999977
No 119
>KOG4676|consensus
Probab=33.53 E-value=53 Score=32.44 Aligned_cols=71 Identities=24% Similarity=0.387 Sum_probs=45.4
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCe-EEEEeCCHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRR-MRVNYESSAAA 117 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~R-iiVVF~~~eaA 117 (238)
-.|-||||.+ ..-+++|+.||.-.|||- + |.-|..+ .=+.++-..| ++|-|.|.+.+
T Consensus 8 ~vIqvanisp-----sat~dqm~tlFg~lGkI~------------e----lrlyp~~-~d~~~pv~sRtcyVkf~d~~sv 65 (479)
T KOG4676|consen 8 GVIQVANISP-----SATKDQMQTLFGNLGKIP------------E----LRLYPNV-DDSKIPVISRTCYVKFLDSQSV 65 (479)
T ss_pred ceeeecccCc-----hhhHHHHHHHHhhccccc------------c----ccccCCC-CCccCcceeeeEEEeccCCcce
Confidence 3678999987 467889999999888862 0 1123322 2233444444 66777777766
Q ss_pred HHHHHHhcCCccCCc
Q psy258 118 AKARINLHQSVFASS 132 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~ 132 (238)
..| ++|.++.|-|.
T Consensus 66 ~va-QhLtntvfvdr 79 (479)
T KOG4676|consen 66 TVA-QHLTNTVFVDR 79 (479)
T ss_pred eHH-hhhccceeeee
Confidence 554 67777777663
No 120
>PRK11797 D-ribose pyranase; Provisional
Probab=31.97 E-value=44 Score=27.85 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.8
Q ss_pred CCCCcHHHHHHHHhcCCCCc
Q psy258 180 EPLVNYDLLAAIASLTPGLS 199 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge~ 199 (238)
.|.+|.||+.+|+++++|..
T Consensus 4 ~~iLnp~Ll~~La~mGHgD~ 23 (139)
T PRK11797 4 TGLLNSEISSVIARLGHTDT 23 (139)
T ss_pred cccCCHHHHHHHHHcCCCCe
Confidence 57889999999999999874
No 121
>KOG1995|consensus
Probab=31.68 E-value=39 Score=32.56 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=61.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcc----hhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKS----FQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~ 113 (238)
-.|+++..+++.+=. ..+.+.|.|-|.|.- =+|+ |..|-+. ...+.-+.+.|+|+|
T Consensus 66 ~~ti~v~g~~d~~~~-----~~~~~~f~qcg~ikrnK~t~kPk------------i~~y~dk---eT~~~KGeatvS~~D 125 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCE-----NDNADFFLQCGVIKRNKRTGKPK------------IKIYTDK---ETGAPKGEATVSYED 125 (351)
T ss_pred cccceeeccCccchH-----HHHHHHHhhcceeccCCCCCCcc------------hhccccc---cccCcCCceeeeecC
Confidence 359999999986444 245566776666520 0111 1122222 456677899999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQPMTP 144 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~ 144 (238)
..+|+.|-.-+.+-.|.++.++|.+|...+.
T Consensus 126 ~~~akaai~~~agkdf~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 126 PPAAKAAIEWFAGKDFCGNTIKVSLAERRTG 156 (351)
T ss_pred hhhhhhhhhhhccccccCCCchhhhhhhccC
Confidence 9999999999999999999999999877554
No 122
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=29.28 E-value=1.3e+02 Score=25.67 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=39.8
Q ss_pred EEEEeCCHHHHHHHHHHhcC-------CccCCcceE-EEEeCCCCCCCCCCCccCCCCC-CcceeeCCCCCCCCCCCCC
Q psy258 107 MRVNYESSAAAAKARINLHQ-------SVFASSKIN-VYFVQPMTPFDSADQHLQPPAP-TKQFLISPPSSPPVGWEPR 176 (238)
Q Consensus 107 iiVVF~~~eaA~~Ar~~L~~-------~~f~g~~lr-IyFAq~~t~~~~~~~~L~~P~~-~K~FLISPP~SPP~gWe~~ 176 (238)
|-+-|.+.+.|.+.|+.|-+ ..++|+++- +-+.++..-..-.-.-++||-| .|.| |..|||+.
T Consensus 5 ialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~k~Y-------p~eGWEHI 76 (149)
T cd07268 5 IALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKDKKY-------PQEGWEHI 76 (149)
T ss_pred EEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCC-------CCCCceEE
Confidence 34568899999999988765 247787653 2333332211123346788887 4554 67899984
No 123
>KOG4209|consensus
Probab=28.58 E-value=2.9e+02 Score=24.78 Aligned_cols=50 Identities=18% Similarity=0.060 Sum_probs=37.1
Q ss_pred hcCCc--eEEEecCCCC----eEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 91 QFGKP--KSFQYLKSFR----RMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 91 ~~~~i--v~fv~LkSF~----RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
..|.+ +.+..-+..+ =++|-|.+.+.+..|.+ |++..+.+..+.+..-..
T Consensus 124 ~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 124 SCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred ccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 44445 3555555554 59999999999999999 999999887766665443
No 124
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=28.37 E-value=66 Score=21.47 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=19.2
Q ss_pred HHHHHhhc-CCCcchhhhhhhHHHHHHHH
Q psy258 60 IETLLSQF-GKPKSFQYLKNDALKEQIET 87 (238)
Q Consensus 60 l~~lF~~~-g~~~~~~~~~~~~~~~~~~~ 87 (238)
|=+||-|| |+++ .+.++.+|.+.|++
T Consensus 11 lGaLyHQF~GtPv--s~~~~~~le~aie~ 37 (38)
T PF04036_consen 11 LGALYHQFVGTPV--SPETAESLEKAIEE 37 (38)
T ss_dssp HHHHHHHHTT-EE--STTTHHHHHHHHHH
T ss_pred HHHHHHHhcCCcC--CcchHHHHHHHHhc
Confidence 66788888 5555 47888999998875
No 125
>KOG2068|consensus
Probab=25.33 E-value=27 Score=33.34 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=26.5
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 106 RMRVNYESSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 106 RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
-+.|.|...+.|..|.+.++++..-|+.++..|+
T Consensus 127 s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g 160 (327)
T KOG2068|consen 127 SVYITYEEEEDADRCIDDVDGFVDDGRALKASLG 160 (327)
T ss_pred cccccccchHhhhhHHHHhhhHHhhhhhhHHhhC
Confidence 4889999999999999999998665544444443
No 126
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.51 E-value=1.2e+02 Score=21.79 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHhcCCcc
Q psy258 104 FRRMRVNYESSAAAAKARINLHQSVF 129 (238)
Q Consensus 104 F~RiiVVF~~~eaA~~Ar~~L~~~~f 129 (238)
+.+.+|+|.+...|.+|.+.|+...+
T Consensus 1 m~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 1 MKYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCC
Confidence 36789999999999999999997644
No 127
>PRK11700 hypothetical protein; Provisional
Probab=21.31 E-value=1.7e+02 Score=25.82 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=43.4
Q ss_pred eEEEEeCCHHHHHHHHHHhcC-------CccCCcceE-EEEeCCCCCCCCCCCccCCCCC-CcceeeCCCCCCCCCCCCC
Q psy258 106 RMRVNYESSAAAAKARINLHQ-------SVFASSKIN-VYFVQPMTPFDSADQHLQPPAP-TKQFLISPPSSPPVGWEPR 176 (238)
Q Consensus 106 RiiVVF~~~eaA~~Ar~~L~~-------~~f~g~~lr-IyFAq~~t~~~~~~~~L~~P~~-~K~FLISPP~SPP~gWe~~ 176 (238)
-|=+-|.+.+.|.+.|+.|-. ..++|+++- +-+.++..-..-.-.-+++|-| .|.| |..|||+.
T Consensus 42 HialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Y-------p~eGWEHI 114 (187)
T PRK11700 42 HIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKRY-------PHEGWEHI 114 (187)
T ss_pred EEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCC-------CCCCceEE
Confidence 566779999999999988765 247787653 2333432211122346788886 4655 67899985
Q ss_pred CCCCC
Q psy258 177 PESEP 181 (238)
Q Consensus 177 ~E~~P 181 (238)
.=--|
T Consensus 115 ElVlp 119 (187)
T PRK11700 115 ELVLP 119 (187)
T ss_pred EEEec
Confidence 43333
No 128
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.19 E-value=1.3e+02 Score=22.62 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=22.4
Q ss_pred CCceEEEecCCCCeEEEEeCCHHHHHHHH
Q psy258 93 GKPKSFQYLKSFRRMRVNYESSAAAAKAR 121 (238)
Q Consensus 93 ~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar 121 (238)
..+.....-+.+++++|.+..-+.|..+-
T Consensus 43 ~~Vnt~~~~~~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 43 EKVNTLITPRGEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 45666666778899999998888887654
Done!