Query psy258
Match_columns 238
No_of_seqs 148 out of 229
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 19:47:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wey_A Calcipressin 1; structu 100.0 1.1E-33 3.7E-38 222.8 10.0 102 35-164 2-103 (104)
2 2diu_A KIAA0430 protein; struc 99.4 2.6E-13 8.7E-18 105.3 8.5 76 40-145 10-87 (96)
3 2a3j_A U1 small nuclear ribonu 99.2 8.2E-11 2.8E-15 93.9 8.4 80 39-144 30-112 (127)
4 2fy1_A RNA-binding motif prote 98.9 1.4E-08 4.9E-13 78.4 12.7 101 36-166 5-110 (116)
5 1nu4_A U1A RNA binding domain; 98.9 6.3E-09 2.2E-13 76.6 9.0 79 38-142 8-89 (97)
6 3r27_A HnRNP L, heterogeneous 98.9 6.4E-09 2.2E-13 80.5 9.0 73 39-141 22-96 (100)
7 2dgx_A KIAA0430 protein; RRM d 98.8 2.2E-08 7.4E-13 74.5 9.2 77 39-141 10-89 (96)
8 1why_A Hypothetical protein ri 98.7 1.1E-07 3.9E-12 70.2 11.1 75 38-142 17-93 (97)
9 2cpj_A Non-POU domain-containi 98.7 6.1E-08 2.1E-12 71.9 9.0 76 38-143 15-90 (99)
10 4fxv_A ELAV-like protein 1; RN 98.7 5.2E-08 1.8E-12 73.5 8.6 74 38-141 19-98 (99)
11 2do0_A HnRNP M, heterogeneous 98.7 1.9E-07 6.5E-12 70.6 11.7 76 36-141 13-93 (114)
12 4a8x_A RNA-binding protein wit 98.7 6.5E-08 2.2E-12 69.5 8.7 74 38-141 4-84 (88)
13 2e44_A Insulin-like growth fac 98.7 4.7E-08 1.6E-12 71.9 7.8 74 38-141 15-91 (96)
14 2dnz_A Probable RNA-binding pr 98.7 1.4E-07 4.6E-12 69.1 10.3 75 38-142 5-85 (95)
15 1whx_A Hypothetical protein ri 98.7 7E-08 2.4E-12 74.0 9.0 73 39-141 11-83 (111)
16 2ytc_A PRE-mRNA-splicing facto 98.7 6E-08 2E-12 69.6 8.1 73 38-140 12-85 (85)
17 1wex_A Hypothetical protein (r 98.7 8.4E-08 2.9E-12 73.7 9.0 73 39-141 16-90 (104)
18 2cpx_A Hypothetical protein FL 98.7 8.4E-08 2.9E-12 72.7 8.9 80 38-141 25-104 (115)
19 1x4f_A Matrin 3; structural ge 98.7 2.1E-07 7E-12 73.2 11.0 77 38-144 25-104 (112)
20 1x5s_A Cold-inducible RNA-bind 98.7 1.7E-07 5.6E-12 69.6 9.9 75 38-142 12-92 (102)
21 2la4_A Nuclear and cytoplasmic 98.7 4.7E-08 1.6E-12 72.7 6.8 84 28-141 16-100 (101)
22 2cqi_A Nucleolysin TIAR; RNA r 98.6 1.5E-07 5.3E-12 70.1 9.4 76 36-141 13-92 (103)
23 1x4d_A Matrin 3; structural ge 98.6 7.5E-08 2.6E-12 74.2 7.8 74 38-141 15-91 (102)
24 3mdf_A Peptidyl-prolyl CIS-tra 98.6 1.2E-07 4.1E-12 67.9 8.2 73 38-140 7-85 (85)
25 2cqh_A IGF-II mRNA-binding pro 98.6 5.2E-08 1.8E-12 71.4 6.4 74 38-141 8-82 (93)
26 2cph_A RNA binding motif prote 98.6 3.6E-07 1.2E-11 68.2 10.9 76 38-143 15-98 (107)
27 1x4g_A Nucleolysin TIAR; struc 98.6 1.5E-07 5.1E-12 71.1 8.8 75 38-142 25-99 (109)
28 2dgo_A Cytotoxic granule-assoc 98.6 2.7E-07 9.3E-12 70.0 10.3 76 38-143 15-96 (115)
29 3egn_A RNA-binding protein 40; 98.6 1.6E-07 5.3E-12 74.3 9.2 88 38-144 45-132 (143)
30 2lxi_A RNA-binding protein 10; 98.6 6.3E-08 2.1E-12 71.8 6.4 74 38-141 1-82 (91)
31 1whw_A Hypothetical protein ri 98.6 1.9E-07 6.6E-12 68.9 9.0 74 38-141 8-87 (99)
32 2e5j_A Methenyltetrahydrofolat 98.6 4.1E-07 1.4E-11 67.3 10.7 78 35-141 16-93 (97)
33 2dis_A Unnamed protein product 98.6 4.8E-07 1.6E-11 67.8 11.3 77 38-144 8-94 (109)
34 1sjr_A Polypyrimidine tract-bi 98.6 1.3E-07 4.6E-12 79.2 8.9 73 40-142 48-124 (164)
35 2d9p_A Polyadenylate-binding p 98.6 1.5E-07 5.3E-12 70.1 8.3 75 38-142 15-93 (103)
36 2lkz_A RNA-binding protein 5; 98.6 1.1E-07 3.7E-12 71.9 7.5 75 39-141 10-94 (95)
37 2cq3_A RNA-binding protein 9; 98.6 3.7E-07 1.2E-11 68.0 10.2 76 37-142 14-93 (103)
38 2e5h_A Zinc finger CCHC-type a 98.6 1.9E-07 6.3E-12 68.2 8.4 73 38-140 16-94 (94)
39 3md1_A Nuclear and cytoplasmic 98.6 1.5E-07 5.3E-12 67.0 7.8 73 39-141 2-80 (83)
40 2cq1_A PTB-like protein L; RRM 98.6 2.4E-07 8.3E-12 70.8 9.3 73 39-141 16-90 (101)
41 2dnq_A RNA-binding protein 4B; 98.6 2.8E-07 9.7E-12 67.1 9.3 73 38-142 8-80 (90)
42 3p5t_L Cleavage and polyadenyl 98.6 1.4E-07 4.8E-12 69.1 7.5 74 40-141 3-82 (90)
43 2x1f_A MRNA 3'-END-processing 98.6 2.6E-07 9E-12 68.1 9.1 73 39-141 3-81 (96)
44 2dgv_A HnRNP M, heterogeneous 98.6 1.4E-07 4.9E-12 68.6 7.4 75 38-142 8-86 (92)
45 3pgw_A U1-A; protein-RNA compl 98.6 3E-07 1E-11 79.3 10.7 80 38-143 9-91 (282)
46 2do4_A Squamous cell carcinoma 98.6 2.8E-07 9.4E-12 68.3 9.0 74 38-141 17-95 (100)
47 2dgt_A RNA-binding protein 30; 98.6 2.4E-07 8.3E-12 67.8 8.5 72 38-141 10-81 (92)
48 2hvz_A Splicing factor, argini 98.6 2.3E-07 7.9E-12 68.9 8.5 74 39-142 1-75 (101)
49 2e5i_A Heterogeneous nuclear r 98.6 2.3E-07 8E-12 74.0 9.1 74 40-143 27-103 (124)
50 2dnh_A Bruno-like 5, RNA bindi 98.6 3.6E-07 1.2E-11 68.1 9.5 75 37-141 14-96 (105)
51 2cpf_A RNA binding motif prote 98.6 1.6E-07 5.4E-12 69.3 7.5 74 38-141 5-87 (98)
52 2nlw_A Eukaryotic translation 98.6 3.6E-07 1.2E-11 68.9 9.4 81 36-141 13-99 (105)
53 3zzy_A Polypyrimidine tract-bi 98.6 1.7E-07 6E-12 75.6 8.0 73 40-142 30-106 (130)
54 2cqc_A Arginine/serine-rich sp 98.5 1.7E-07 6E-12 68.3 7.1 74 38-141 15-94 (95)
55 2dnp_A RNA-binding protein 14; 98.5 4.8E-07 1.6E-11 65.9 9.3 72 38-141 9-80 (90)
56 1x4a_A Splicing factor, argini 98.5 3.7E-07 1.3E-11 68.7 8.9 74 38-141 22-98 (109)
57 3bs9_A Nucleolysin TIA-1 isofo 98.5 3E-07 1E-11 66.0 8.0 74 38-141 6-85 (87)
58 2dnm_A SRP46 splicing factor; 98.5 4E-07 1.4E-11 67.8 8.9 75 38-142 13-93 (103)
59 1x5t_A Splicing factor 3B subu 98.5 3.5E-07 1.2E-11 67.0 8.4 76 38-143 5-87 (96)
60 2jrs_A RNA-binding protein 39; 98.5 3.6E-07 1.2E-11 69.7 8.7 77 37-143 25-107 (108)
61 3ulh_A THO complex subunit 4; 98.5 2.4E-07 8.3E-12 69.3 7.6 73 38-140 29-106 (107)
62 2cqp_A RNA-binding protein 12; 98.5 4.8E-07 1.6E-11 66.6 9.1 79 36-141 13-94 (98)
63 2ywk_A Putative RNA-binding pr 98.5 2.3E-07 7.8E-12 67.9 7.3 74 38-141 16-94 (95)
64 2xnq_A Nuclear polyadenylated 98.5 5.9E-07 2E-11 67.1 9.6 72 38-141 22-94 (97)
65 2ad9_A Polypyrimidine tract-bi 98.5 3.2E-07 1.1E-11 72.8 8.5 73 39-141 32-106 (119)
66 1sjq_A Polypyrimidine tract-bi 98.5 1.6E-07 5.5E-12 73.1 6.7 74 38-141 16-91 (105)
67 1x4c_A Splicing factor, argini 98.5 4.4E-07 1.5E-11 68.6 8.9 75 38-143 15-94 (108)
68 2wbr_A GW182, gawky, LD47780P; 98.5 4.1E-07 1.4E-11 69.5 8.7 73 38-140 7-79 (89)
69 1p1t_A Cleavage stimulation fa 98.5 3.1E-07 1.1E-11 68.2 7.9 73 39-141 9-87 (104)
70 2kt5_A RNA and export factor-b 98.5 7.8E-07 2.7E-11 68.6 10.4 74 38-141 35-113 (124)
71 2la6_A RNA-binding protein FUS 98.5 4.7E-07 1.6E-11 67.1 8.7 83 38-140 13-99 (99)
72 1p27_B RNA-binding protein 8A; 98.5 4.2E-07 1.4E-11 67.8 8.5 73 39-141 24-102 (106)
73 1x5u_A Splicing factor 3B subu 98.5 8.4E-07 2.9E-11 66.1 10.1 76 36-141 13-94 (105)
74 2i2y_A Fusion protein consists 98.5 8.1E-07 2.8E-11 70.6 10.7 75 37-141 72-147 (150)
75 2err_A Ataxin-2-binding protei 98.5 5.2E-07 1.8E-11 68.6 9.1 75 37-141 28-106 (109)
76 2fc9_A NCL protein; structure 98.5 1.5E-07 5.2E-12 69.9 5.9 77 37-141 14-90 (101)
77 2cpi_A CCR4-NOT transcription 98.5 1.3E-07 4.4E-12 72.1 5.6 77 38-141 15-100 (111)
78 3lqv_A PRE-mRNA branch site pr 98.5 7.9E-07 2.7E-11 67.4 9.9 75 37-141 7-84 (115)
79 1fjc_A Nucleolin RBD2, protein 98.5 1.3E-07 4.3E-12 69.5 5.2 76 38-142 16-91 (96)
80 2dgs_A DAZ-associated protein 98.5 1.2E-06 4.3E-11 64.6 10.7 74 38-142 10-89 (99)
81 1fj7_A Nucleolin RBD1, protein 98.5 3.6E-07 1.2E-11 67.8 7.7 79 37-141 16-94 (101)
82 2ek1_A RNA-binding protein 12; 98.5 1.2E-07 4E-12 69.5 5.0 76 38-141 15-94 (95)
83 3s8s_A Histone-lysine N-methyl 98.5 3.9E-07 1.3E-11 70.2 8.1 74 38-141 6-85 (110)
84 1x4h_A RNA-binding protein 28; 98.5 8.1E-07 2.8E-11 66.7 9.7 75 38-142 15-101 (111)
85 2kvi_A Nuclear polyadenylated 98.5 5.2E-07 1.8E-11 66.8 8.5 72 38-141 10-82 (96)
86 1oo0_B CG8781-PA, drosophila Y 98.5 6.6E-07 2.3E-11 67.3 9.2 73 39-141 27-105 (110)
87 2dgp_A Bruno-like 4, RNA bindi 98.5 9.6E-07 3.3E-11 65.9 9.9 74 38-141 13-95 (106)
88 2cqb_A Peptidyl-prolyl CIS-tra 98.5 5.3E-07 1.8E-11 66.9 8.2 74 38-141 12-91 (102)
89 2div_A TRNA selenocysteine ass 98.5 5.6E-07 1.9E-11 66.4 8.3 76 36-141 7-93 (99)
90 4f25_A Polyadenylate-binding p 98.5 5.9E-07 2E-11 68.9 8.4 73 39-141 6-82 (115)
91 3ex7_B RNA-binding protein 8A; 98.5 7.5E-07 2.6E-11 68.6 9.0 75 39-143 23-103 (126)
92 2dgu_A Heterogeneous nuclear r 98.5 6.2E-07 2.1E-11 67.0 8.3 72 38-141 11-82 (103)
93 3ns6_A Eukaryotic translation 98.5 4.3E-07 1.5E-11 68.1 7.4 80 36-141 4-92 (100)
94 2cpz_A CUG triplet repeat RNA- 98.5 6.6E-07 2.2E-11 68.0 8.5 74 38-141 25-104 (115)
95 2mss_A Protein (musashi1); RNA 98.5 3.8E-07 1.3E-11 64.0 6.6 69 40-139 1-75 (75)
96 3tyt_A Heterogeneous nuclear r 98.5 5.6E-07 1.9E-11 76.1 8.8 73 39-141 5-79 (205)
97 2khc_A Testis-specific RNP-typ 98.4 3.2E-07 1.1E-11 69.9 6.5 73 38-140 40-118 (118)
98 2cqd_A RNA-binding region cont 98.4 2.2E-06 7.4E-11 65.2 10.9 73 38-141 17-95 (116)
99 2pe8_A Splicing factor 45; RRM 98.4 9.1E-07 3.1E-11 67.9 8.9 77 39-141 9-93 (105)
100 2jvo_A Nucleolar protein 3; nu 98.4 7.1E-07 2.4E-11 68.1 8.2 74 36-141 29-102 (108)
101 3ucg_A Polyadenylate-binding p 98.4 7.1E-07 2.4E-11 64.3 7.7 72 39-141 7-84 (89)
102 2kxn_B Transformer-2 protein h 98.4 8.9E-07 3.1E-11 69.8 8.9 74 38-141 46-125 (129)
103 2krb_A Eukaryotic translation 98.4 1E-06 3.4E-11 63.1 8.4 73 39-136 2-80 (81)
104 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.4 7.1E-07 2.4E-11 69.3 8.1 72 38-139 63-140 (140)
105 2cpd_A Apobec-1 stimulating pr 98.4 2.5E-06 8.5E-11 63.1 10.6 75 38-142 15-89 (99)
106 3u1l_A PRE-mRNA-splicing facto 98.4 7E-07 2.4E-11 78.8 8.8 80 38-142 134-229 (240)
107 2cq0_A Eukaryotic translation 98.4 5.9E-07 2E-11 66.9 7.1 75 38-142 15-95 (103)
108 1wf1_A RNA-binding protein RAL 98.4 8.9E-07 3E-11 66.9 8.1 72 38-141 27-99 (110)
109 3v4m_A Splicing factor U2AF 65 98.4 1.4E-06 4.9E-11 66.7 9.1 58 84-141 31-96 (105)
110 1x5p_A Negative elongation fac 98.4 8.2E-07 2.8E-11 65.7 7.4 73 38-142 15-87 (97)
111 2cpe_A RNA-binding protein EWS 98.4 1.5E-06 5.1E-11 65.7 9.0 85 38-142 15-103 (113)
112 1u6f_A Tcubp1, RNA-binding pro 98.4 1E-06 3.5E-11 68.9 8.3 77 36-142 40-122 (139)
113 2dit_A HIV TAT specific factor 98.4 1.7E-06 5.9E-11 66.0 9.2 81 39-144 16-104 (112)
114 2dhg_A TRNA selenocysteine ass 98.4 1.3E-06 4.4E-11 64.9 7.9 74 38-141 9-89 (104)
115 1x5o_A RNA binding motif, sing 98.4 2.1E-06 7.1E-11 65.0 9.0 74 38-141 25-111 (114)
116 2jvr_A Nucleolar protein 3; RN 98.3 1E-06 3.5E-11 68.6 7.1 73 39-141 29-104 (111)
117 1fxl_A Paraneoplastic encephal 98.3 1.7E-06 5.8E-11 67.6 8.3 73 39-141 3-81 (167)
118 2kn4_A Immunoglobulin G-bindin 98.3 2.5E-06 8.7E-11 67.9 9.2 75 38-142 70-150 (158)
119 2lea_A Serine/arginine-rich sp 98.3 2.4E-06 8.1E-11 67.7 8.9 75 39-143 48-128 (135)
120 1rk8_A CG8781-PA, CG8781-PA pr 98.3 1.4E-06 4.7E-11 70.7 7.4 74 40-143 74-153 (165)
121 1h2v_Z 20 kDa nuclear CAP bind 98.3 4.4E-06 1.5E-10 66.7 10.2 76 36-141 37-118 (156)
122 1wg1_A KIAA1579 protein, homol 98.3 1.2E-06 4.2E-11 63.7 6.3 73 38-141 5-77 (88)
123 1iqt_A AUF1, heterogeneous nuc 98.3 1.1E-06 3.9E-11 61.4 5.8 69 40-139 1-75 (75)
124 2jwn_A Embryonic polyadenylate 98.3 1.3E-06 4.5E-11 67.0 6.6 74 38-142 36-115 (124)
125 2hzc_A Splicing factor U2AF 65 98.3 2.2E-06 7.6E-11 61.4 7.4 80 38-137 6-85 (87)
126 2cq4_A RNA binding motif prote 98.3 1.6E-06 5.4E-11 65.8 6.9 73 38-141 25-103 (114)
127 2dnr_A Synaptojanin-1; RRM dom 98.3 1.4E-06 4.7E-11 66.8 6.5 73 40-141 9-85 (91)
128 1uaw_A Mouse-musashi-1; RNP-ty 98.3 3.4E-06 1.2E-10 59.0 8.1 70 39-139 1-76 (77)
129 2yh0_A Splicing factor U2AF 65 98.3 8E-07 2.7E-11 71.9 5.3 84 38-142 4-88 (198)
130 2ki2_A SS-DNA binding protein 98.3 9.3E-07 3.2E-11 64.1 5.2 72 39-141 2-79 (90)
131 1wi8_A EIF-4B, eukaryotic tran 98.3 2.9E-06 1E-10 63.3 8.0 73 38-142 15-94 (104)
132 3pgw_A U1-A; protein-RNA compl 98.3 2.7E-06 9.2E-11 73.3 8.9 72 39-140 208-281 (282)
133 2m2b_A RNA-binding protein 10; 98.3 5.9E-06 2E-10 64.5 10.1 77 38-141 23-107 (131)
134 2bz2_A Negative elongation fac 98.3 2.9E-06 9.9E-11 66.3 8.1 73 38-142 39-111 (121)
135 2fc8_A NCL protein; structure 98.3 6.7E-07 2.3E-11 66.3 4.2 74 38-142 15-92 (102)
136 1qm9_A Polypyrimidine tract-bi 98.3 3.9E-06 1.3E-10 68.4 9.2 75 38-141 120-196 (198)
137 3md3_A Nuclear and cytoplasmic 98.3 2.5E-06 8.5E-11 66.6 7.6 73 38-140 87-165 (166)
138 2g4b_A Splicing factor U2AF 65 98.3 1.3E-06 4.3E-11 69.2 5.9 76 39-141 5-87 (172)
139 2adc_A Polypyrimidine tract-bi 98.2 4.7E-06 1.6E-10 70.4 9.8 73 39-141 152-227 (229)
140 2j76_E EIF-4B, EIF4B, eukaryot 98.2 3.6E-06 1.2E-10 62.7 8.1 74 36-141 17-97 (100)
141 2f3j_A RNA and export factor b 98.2 5.1E-06 1.7E-10 69.0 9.8 74 38-141 88-166 (177)
142 3beg_B Splicing factor, argini 98.2 7.4E-06 2.5E-10 62.8 9.9 73 38-141 16-93 (115)
143 2qfj_A FBP-interacting repress 98.2 4E-06 1.4E-10 68.7 8.8 74 38-141 125-204 (216)
144 1jmt_A Splicing factor U2AF 35 98.2 6.1E-06 2.1E-10 63.0 9.2 60 80-139 38-103 (104)
145 1b7f_A Protein (SXL-lethal pro 98.2 3.7E-06 1.3E-10 66.0 8.2 73 39-141 4-82 (168)
146 2lcw_A RNA-binding protein FUS 97.5 1.5E-07 5.2E-12 71.8 0.0 85 38-142 7-95 (116)
147 2dgw_A Probable RNA-binding pr 98.2 3.8E-06 1.3E-10 61.1 7.5 72 38-141 10-86 (91)
148 1fje_B Nucleolin RBD12, protei 98.2 1.5E-06 5.3E-11 69.2 5.6 74 38-141 99-173 (175)
149 3q2s_C Cleavage and polyadenyl 98.2 3E-06 1E-10 73.1 7.7 75 39-141 69-149 (229)
150 3s6e_A RNA-binding protein 39; 98.2 1.3E-05 4.3E-10 62.8 10.6 55 87-141 36-92 (114)
151 2rs2_A Musashi-1, RNA-binding 98.2 5.2E-06 1.8E-10 63.1 8.1 78 33-141 20-103 (109)
152 1wel_A RNA-binding protein 12; 98.2 1.7E-06 5.9E-11 66.9 5.2 76 38-141 25-103 (124)
153 1x4e_A RNA binding motif, sing 98.2 1.1E-06 3.8E-11 63.0 3.8 72 38-139 5-82 (85)
154 1b7f_A Protein (SXL-lethal pro 98.2 7.7E-06 2.6E-10 64.2 8.8 72 38-139 89-168 (168)
155 2cq2_A Hypothetical protein LO 98.2 6.1E-06 2.1E-10 65.1 8.1 73 39-141 26-105 (114)
156 1qm9_A Polypyrimidine tract-bi 98.1 7.1E-06 2.4E-10 66.9 8.5 74 39-142 4-79 (198)
157 2dng_A Eukaryotic translation 98.1 6.5E-06 2.2E-10 61.2 7.6 72 38-141 15-92 (103)
158 2g4b_A Splicing factor U2AF 65 98.1 4.6E-06 1.6E-10 65.9 7.1 72 38-139 94-171 (172)
159 3ue2_A Poly(U)-binding-splicin 98.1 6.3E-06 2.1E-10 64.8 7.8 76 39-141 21-108 (118)
160 1x4b_A Heterogeneous nuclear r 98.1 5E-06 1.7E-10 63.2 7.0 73 39-142 28-106 (116)
161 2e5g_A U6 snRNA-specific termi 98.1 8.1E-06 2.8E-10 59.9 7.8 73 38-141 8-81 (94)
162 2yh0_A Splicing factor U2AF 65 98.1 6.2E-06 2.1E-10 66.6 7.4 74 38-141 114-193 (198)
163 2adc_A Polypyrimidine tract-bi 98.1 1.1E-05 3.7E-10 68.2 9.2 74 39-142 35-110 (229)
164 2qfj_A FBP-interacting repress 98.1 1.4E-05 4.9E-10 65.3 9.7 73 39-141 29-107 (216)
165 2cjk_A Nuclear polyadenylated 98.1 9.6E-06 3.3E-10 63.7 7.9 72 39-141 88-165 (167)
166 4f02_A Polyadenylate-binding p 98.1 7.7E-06 2.6E-10 68.4 7.6 73 39-141 104-180 (213)
167 1s79_A Lupus LA protein; RRM, 98.1 1.3E-05 4.3E-10 61.0 8.1 73 38-141 11-88 (103)
168 3n9u_C Cleavage and polyadenyl 98.1 1E-05 3.5E-10 66.0 7.8 76 38-141 55-136 (156)
169 3nmr_A Cugbp ELAV-like family 98.1 1.6E-05 5.6E-10 62.6 8.8 73 38-140 95-175 (175)
170 3md3_A Nuclear and cytoplasmic 98.1 9.9E-06 3.4E-10 63.1 7.5 72 40-141 2-78 (166)
171 1fje_B Nucleolin RBD12, protei 98.1 1.9E-05 6.6E-10 62.7 9.2 78 38-141 13-90 (175)
172 3s7r_A Heterogeneous nuclear r 98.1 1.3E-05 4.4E-10 57.6 7.4 71 38-139 11-87 (87)
173 1fxl_A Paraneoplastic encephal 98.1 2.1E-05 7.2E-10 61.3 9.2 72 38-139 88-167 (167)
174 2dh8_A DAZ-associated protein 98.0 5.7E-06 1.9E-10 61.6 5.4 73 38-141 16-94 (105)
175 3sde_A Paraspeckle component 1 98.0 1.4E-05 4.8E-10 68.9 8.4 73 39-141 23-95 (261)
176 2cqg_A TDP-43, TAR DNA-binding 98.0 2.1E-05 7.3E-10 58.3 8.2 72 38-141 15-92 (103)
177 1ufw_A Synaptojanin 2; RNP dom 98.0 1.8E-05 6E-10 61.2 7.5 70 40-138 17-91 (95)
178 3pgw_S U1-70K; protein-RNA com 98.0 1.8E-05 6E-10 74.6 9.2 74 38-141 102-181 (437)
179 3smz_A Protein raver-1, ribonu 98.0 2.2E-05 7.5E-10 67.6 8.6 76 38-142 184-264 (284)
180 2db1_A Heterogeneous nuclear r 98.0 1.9E-05 6.5E-10 60.9 7.2 76 38-141 17-97 (118)
181 4f02_A Polyadenylate-binding p 97.9 2E-05 6.9E-10 65.8 7.6 73 39-141 16-94 (213)
182 2xs2_A Deleted in azoospermia- 97.9 5.7E-06 1.9E-10 61.3 2.9 73 38-142 9-86 (102)
183 2cpy_A RNA-binding protein 12; 97.9 3.6E-05 1.2E-09 58.6 7.2 75 38-141 15-93 (114)
184 3smz_A Protein raver-1, ribonu 97.9 4.4E-05 1.5E-09 65.7 8.5 73 38-141 22-94 (284)
185 2hgl_A HNRPF protein, heteroge 97.8 5.1E-05 1.7E-09 60.9 8.0 75 38-141 44-124 (136)
186 3nmr_A Cugbp ELAV-like family 97.8 5.2E-05 1.8E-09 59.6 7.8 73 39-141 4-87 (175)
187 2lmi_A GRSF-1, G-rich sequence 97.8 6.7E-05 2.3E-09 56.5 7.8 78 36-141 9-91 (107)
188 1wg5_A Heterogeneous nuclear r 97.8 0.00011 3.6E-09 55.1 8.2 73 38-141 15-93 (104)
189 2ghp_A U4/U6 snRNA-associated 97.8 5.4E-05 1.8E-09 65.4 7.3 74 38-141 210-290 (292)
190 3d2w_A TAR DNA-binding protein 97.7 0.00012 4E-09 53.8 8.1 72 36-141 9-83 (89)
191 1l3k_A Heterogeneous nuclear r 97.7 7.4E-05 2.5E-09 60.1 7.4 74 39-143 105-184 (196)
192 1l3k_A Heterogeneous nuclear r 97.7 7.1E-05 2.4E-09 60.2 7.1 73 38-141 13-91 (196)
193 2ghp_A U4/U6 snRNA-associated 97.7 0.00013 4.5E-09 62.9 8.6 74 38-141 117-196 (292)
194 2dha_A FLJ20171 protein; RRM d 97.6 4.6E-05 1.6E-09 60.1 4.7 77 38-141 23-104 (123)
195 1wf0_A TDP-43, TAR DNA-binding 97.6 5E-05 1.7E-09 54.8 4.5 72 38-141 5-77 (88)
196 1wez_A HnRNP H', FTP-3, hetero 97.6 0.0001 3.5E-09 55.5 6.2 73 37-141 14-91 (102)
197 3dxb_A Thioredoxin N-terminall 97.6 0.00023 8E-09 59.6 8.8 114 28-141 76-212 (222)
198 2dnl_A Cytoplasmic polyadenyla 97.5 0.00023 8E-09 54.0 6.9 70 38-140 8-86 (114)
199 3tyt_A Heterogeneous nuclear r 97.5 0.00022 7.6E-09 60.0 7.3 66 39-132 124-193 (205)
200 2d9o_A DNAJ (HSP40) homolog, s 97.4 0.00047 1.6E-08 52.5 7.9 59 56-141 30-89 (100)
201 2dnn_A RNA-binding protein 12; 97.4 0.00062 2.1E-08 52.3 8.0 71 39-141 17-92 (109)
202 2cjk_A Nuclear polyadenylated 97.4 0.00041 1.4E-08 54.2 6.8 71 39-141 4-80 (167)
203 2hgn_A Heterogeneous nuclear r 97.3 0.0002 6.9E-09 57.6 5.0 73 37-141 45-122 (139)
204 2voo_A Lupus LA protein; RNA-b 97.3 0.00031 1.1E-08 58.8 6.1 72 39-141 110-186 (193)
205 3tht_A Alkylated DNA repair pr 97.3 0.00082 2.8E-08 62.0 9.0 76 36-141 15-98 (345)
206 3sde_A Paraspeckle component 1 97.2 0.00067 2.3E-08 58.3 7.1 75 38-142 96-179 (261)
207 2j8a_A Histone-lysine N-methyl 97.1 0.00019 6.4E-09 58.7 2.2 75 37-141 1-95 (136)
208 2l9w_A U4/U6 snRNA-associated- 97.1 0.0025 8.5E-08 50.7 8.5 73 35-137 18-95 (117)
209 2hgm_A HNRPF protein, heteroge 97.1 0.0011 3.7E-08 52.6 6.5 72 38-141 42-120 (126)
210 1owx_A Lupus LA protein, SS-B, 93.3 0.28 9.6E-06 38.7 7.4 72 36-137 14-91 (121)
211 2dhx_A Poly (ADP-ribose) polym 91.1 0.63 2.1E-05 36.2 6.8 73 37-137 7-79 (104)
212 1wwh_A Nucleoporin 35, nucleop 79.9 4.8 0.00017 31.7 6.6 40 91-131 46-85 (119)
213 1uw4_A UPF3X; nonsense mediate 66.4 5.2 0.00018 29.9 3.5 30 103-132 44-73 (91)
214 2i2y_A Fusion protein consists 62.8 3.5 0.00012 31.8 2.1 39 102-141 11-50 (150)
215 2dit_A HIV TAT specific factor 46.9 11 0.00037 27.7 2.4 11 82-92 40-50 (112)
216 2l08_A Regulator of nonsense t 44.0 7 0.00024 29.8 0.9 31 102-132 51-81 (97)
217 1whv_A Poly(A)-specific ribonu 43.4 58 0.002 24.9 6.0 56 38-126 16-71 (100)
218 3s6e_A RNA-binding protein 39; 39.1 16 0.00056 27.6 2.4 35 37-71 5-45 (114)
219 4a34_A RBSD/FUCU transport pro 34.3 33 0.0011 27.7 3.6 20 180-199 6-25 (147)
220 3mvk_A Protein FUCU, protein R 32.5 37 0.0013 27.4 3.6 20 180-199 6-25 (148)
221 3e7n_A D-ribose high-affinity 29.4 27 0.00091 27.9 2.2 20 180-199 7-26 (142)
222 3ctr_A Poly(A)-specific ribonu 28.8 40 0.0014 25.8 3.0 23 104-126 39-61 (101)
223 2ob5_A AGR_C_3656P, hypothetic 28.0 49 0.0017 26.8 3.6 19 180-198 10-28 (153)
224 3dsa_A D-ribose high-affinity 27.1 31 0.0011 27.7 2.2 20 180-199 7-26 (142)
225 1ogd_A High affinity ribose tr 25.8 34 0.0012 27.1 2.2 20 180-199 4-23 (131)
226 2wcv_A L-fucose mutarotase; ri 25.8 32 0.0011 27.5 2.0 20 180-199 6-25 (140)
227 2a3j_A U1 small nuclear ribonu 24.8 62 0.0021 24.6 3.5 15 79-93 44-58 (127)
228 2wcu_A FUCU, protein FUCU homo 24.7 33 0.0011 27.7 2.0 20 180-199 8-27 (149)
229 2iec_A Uncharacterized protein 23.7 59 0.002 26.0 3.2 30 60-91 23-53 (131)
230 3p3d_A Nucleoporin 53; structu 23.6 55 0.0019 26.2 3.0 27 105-132 63-89 (132)
231 2i52_A Hypothetical protein; s 23.1 57 0.0019 25.8 2.9 29 60-90 26-55 (121)
232 2ogf_A Hypothetical protein MJ 21.6 64 0.0022 25.6 3.0 30 60-91 31-61 (122)
233 2kn4_A Immunoglobulin G-bindin 21.5 48 0.0017 25.1 2.3 26 102-127 11-36 (158)
234 3p12_A D-ribose pyranase; carb 20.4 45 0.0015 26.9 1.9 20 180-199 6-25 (144)
No 1
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=100.00 E-value=1.1e-33 Score=222.77 Aligned_cols=102 Identities=33% Similarity=0.616 Sum_probs=97.2
Q ss_pred CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258 35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS 114 (238)
Q Consensus 35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ 114 (238)
+++|||||||||+.+||.++++|++||+||+ +|++.++|++|||||||+|+|.+.
T Consensus 2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~-------------------------~~~~~~tF~~lkSFRRirv~F~~~ 56 (104)
T 1wey_A 2 SSGSSGLIACVANDDVFSESETRAKFESLFR-------------------------TYDKDTTFQYFKSFKRVRINFSNP 56 (104)
T ss_dssp CSCCCEEEEECCCGGGGSTTTHHHHHHHHHH-------------------------TTCSSCEEEEETTTTEEEEECSST
T ss_pred CCCCceEEEecCCHHHcCCHHHHHHHHHHHH-------------------------hhCcCcceeecCcceEEEEEeCCh
Confidence 6899999999999999999999999999999 779999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCCCCCCCCCCCccCCCCCCcceeeC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLIS 164 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~~~~~L~~P~~~K~FLIS 164 (238)
++|++||+.||++.|+|+.|||||||+ +++ .++||++|+++||||||
T Consensus 57 ~~A~~AR~~Lh~~~f~g~~~r~YFgq~-~~~--~~~~L~pP~p~KqFliS 103 (104)
T 1wey_A 57 LSAADARLRLHKTEFLGKEMKLYFAQT-LHI--GSSHLAPPNPDKSGPSS 103 (104)
T ss_dssp THHHHHHHTSTTSEETTEECEEECCCC-SSC--CSCCSCCCCCCCCCCCC
T ss_pred HHHHHHHHHhccceecCceeEEEecCC-CCC--cccccCCCCcccccccc
Confidence 999999999999999999999999996 443 78999999999999998
No 2
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=105.34 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=66.8
Q ss_pred c-EEEecCCCCCCCChHHHHHHHHHHhhcC-CCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 40 S-LIITNLNPDLFKDDALKEQIETLLSQFG-KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 40 T-LiitnL~~~vf~~~~l~~~l~~lF~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
| |||.|||.++-. +.|+..|+.+|++|| +|+ +++. |+++|+|.+.++|
T Consensus 10 T~lYV~NL~~~~~~-~~lk~~L~~lF~~yGG~Vl-------------------------~Vtg----G~AfV~F~~~esA 59 (96)
T 2diu_A 10 TLLYVYNLPANKDG-KSVSNRLRRLSDNCGGKVL-------------------------SITG----CSAILRFINQDSA 59 (96)
T ss_dssp EEEEEESCCTTSCH-HHHHHHHHHHHHTTTCCEE-------------------------ECCT----TCEEEEESSHHHH
T ss_pred eEEEEeCCCCcCCH-HHHHHHHHHHHHHcCCeeE-------------------------EEec----CEEEEEECCHHHH
Confidence 5 899999999887 889999999999884 766 2221 9999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCCCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPMTPF 145 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~t~~ 145 (238)
++|.+.|++++++|++|+|.||+....+
T Consensus 60 ~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 60 ERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp HHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred HHHHHHhcCCccCCceEEEEecCCCcce
Confidence 9999999999999999999999985553
No 3
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=8.2e-11 Score=93.89 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=67.6
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCCHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYESSA 115 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~~e 115 (238)
+||||.||+..+-. +.|++.|+.+|++||+|. .+... ++.|.++|.|.+.+
T Consensus 30 ~~LfV~nL~~~~~e-~~L~~~L~~~F~~~G~I~-------------------------~v~i~~~~~~rG~aFV~F~~~~ 83 (127)
T 2a3j_A 30 QVVLITNINPEVPK-EKLQALLYALASSQGDIL-------------------------DIVVDLSDDNSGKAYIVFATQE 83 (127)
T ss_dssp SEEEEESCCTTSCH-HHHHHHHHHHHHHHSCEE-------------------------EEEECCCCSSCCCEEEEESSHH
T ss_pred CEEEEeCCCCCCCH-HHHHHHHHHHhccCCCeE-------------------------EEEeccCCCcCCEEEEEECCHH
Confidence 59999999988766 789989999999776644 33333 46688999999999
Q ss_pred HHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258 116 AAAKARINLHQSVFASSKINVYFVQPMTP 144 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lrIyFAq~~t~ 144 (238)
+|..|...|++..|.|+.|+|.||+....
T Consensus 84 ~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 84 SAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp HHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred HHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 99999999999999999999999987443
No 4
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.94 E-value=1.4e-08 Score=78.44 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=70.0
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEE
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVN 110 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVV 110 (238)
+-++||||.||+..+-+ +.|+.+|++||+| ..+...+ +.+-++|.
T Consensus 5 ~~~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i-------------------------~~v~i~~~~~g~~~g~afV~ 54 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNE-----KMLKAVFGKHGPI-------------------------SEVLLIKDRTSKSRGFAFIT 54 (116)
T ss_dssp CSCCEEEEECCTTTCCH-----HHHHHHHHTSSCC-------------------------SEEEEECSTTTTCCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCH-----HHHHHHHHhcCCE-------------------------EEEEEEECCCCCcccEEEEE
Confidence 44789999999986544 3567888866654 4444443 44789999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCCCCCCCCCCCccCCCCCCcceeeCCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPP 166 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~~~~~L~~P~~~K~FLISPP 166 (238)
|.+.++|.+|...|++..|.|..|+|.|++...........-..+...|..+.+||
T Consensus 55 F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~r~R~~~~~~~ 110 (116)
T 2fy1_A 55 FENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLE 110 (116)
T ss_dssp CSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCSSSSSCCCCCCSSCCCSCCC--
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCccceecc
Confidence 99999999999999999999999999999874332112222222334555555554
No 5
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.90 E-value=6.3e-09 Score=76.58 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=66.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCCH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYESS 114 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~~ 114 (238)
.++|||.||+..+-+ ++|++.|+.+|++||+ +..+... ++.|-++|.|.+.
T Consensus 8 ~~~l~V~nLp~~~~~-~~l~~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 8 NHTIYINNLNEKIKK-DELKKSLHAIFSRFGQ-------------------------ILDILVSRSLKMRGQAFVIFKEV 61 (97)
T ss_dssp CSEEEEESCCTTSCH-HHHHHHHHHHHGGGSC-------------------------EEEEECCHHHHHTTCEEEEESSH
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHHHHHhCCC-------------------------EEEEEEEcCCCcCcEEEEEeCCH
Confidence 469999999988766 7888889999996655 4444443 3457899999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
++|..|...|++..+.|..++|.|+++.
T Consensus 62 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 62 SSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 9999999999999999999999999873
No 6
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.89 E-value=6.4e-09 Score=80.50 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=61.9
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
.+|||.|||..+-+ +.|+++|++| |.+..+..+++.|.++|.|.+.++|.
T Consensus 22 ~~l~V~NLp~~~te-----~~L~~lF~~f-------------------------G~V~~v~i~~~kg~AFVef~~~~~A~ 71 (100)
T 3r27_A 22 PVVHIRGLIDGVVE-----ADLVEALQEF-------------------------GPISYVVVMPKKRQALVEFEDVLGAC 71 (100)
T ss_dssp SEEEEESCCTTCCH-----HHHHHHHGGG-------------------------SCEEEEEEETTTTEEEEEESSHHHHH
T ss_pred cEEEEeCCCCCCCH-----HHHHHHHhcc-------------------------CCEEEEEEEcCCCEEEEEECCHHHHH
Confidence 49999999987644 4567888855 55666777788899999999999999
Q ss_pred HHHHHhcCCc--cCCcceEEEEeCC
Q psy258 119 KARINLHQSV--FASSKINVYFVQP 141 (238)
Q Consensus 119 ~Ar~~L~~~~--f~g~~lrIyFAq~ 141 (238)
+|...|++.+ +.|++++|.||+.
T Consensus 72 ~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 72 NAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp HHHHHHHHSCEEETTEEEEEEECSC
T ss_pred HHHHHhcCCCceeCCcEEEEEeccc
Confidence 9999999986 6799999999987
No 7
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=2.2e-08 Score=74.47 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=64.5
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC---CCeEEEEeCCHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS---FRRMRVNYESSA 115 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS---F~RiiVVF~~~e 115 (238)
++|||.||+..+-+ ++|+..|+.+|++|| .+..+...+. .+.++|.|.+.+
T Consensus 10 ~~l~V~nL~~~~~~-~~l~~~l~~~F~~~G-------------------------~v~~v~i~~~~~~rg~afV~f~~~~ 63 (96)
T 2dgx_A 10 ADVQVSNIDYRLSR-KELQQLLQEAFARHG-------------------------KVKSVELSPHTDYQLKAVVQMENLQ 63 (96)
T ss_dssp EEEEEESCCTTSCH-HHHHHHHHHHHHHHS-------------------------CEEEEEECSCCSTTCCEEEEESSHH
T ss_pred CEEEEECCCCCCCH-HHHHHHHHHhccccC-------------------------cEEEEEEEeCCCCCeEEEEEECCHH
Confidence 59999999987766 778888889999665 4555555532 346999999999
Q ss_pred HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 116 AAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+|.+|...|++..|.|+.|+|.+|++
T Consensus 64 ~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 64 DAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 99999999999999999999999987
No 8
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.74 E-value=1.1e-07 Score=70.20 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=62.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.||+..+-+ +.|+.+|++| |.+..+...+..+-++|.|.+.++|
T Consensus 17 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~v~~v~~~~~~g~afV~f~~~~~A 66 (97)
T 1why_A 17 TTRLWVGGLGPNTSL-----AALAREFDRF-------------------------GSIRTIDHVKGDSFAYIQYESLDAA 66 (97)
T ss_dssp CSCEEEECCCSSCCH-----HHHHHHHHTT-------------------------SCEEEEEECSSSCCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCeeEEEEeCCCCEEEEEECCHHHH
Confidence 469999999987544 3466788844 5666777777778899999999999
Q ss_pred HHHHHHhcCCccC--CcceEEEEeCCC
Q psy258 118 AKARINLHQSVFA--SSKINVYFVQPM 142 (238)
Q Consensus 118 ~~Ar~~L~~~~f~--g~~lrIyFAq~~ 142 (238)
.+|...|++..+. |+.|+|.|+++.
T Consensus 67 ~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 67 QAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred HHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 9999999999999 899999999873
No 9
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.72 E-value=6.1e-08 Score=71.94 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=63.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..+|||.||+..+-+ +.|+.+|++| |.+..+...++.+-++|.|.+.++|
T Consensus 15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~~~~~kg~afV~f~~~~~a 64 (99)
T 2cpj_A 15 RSRLFVGNLPPDITE-----EEMRKLFEKY-------------------------GKAGEVFIHKDKGFGFIRLETRTLA 64 (99)
T ss_dssp TTEEEEESCCTTCCH-----HHHHHHTSTT-------------------------CCCSEEEEETTTTEEEEECSSSHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHhhc-------------------------CCeEEEEEecCCCEEEEEECCHHHH
Confidence 359999999986543 3467788855 5566677778889999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
.+|...|++..|.|+.|+|.|+++..
T Consensus 65 ~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 65 EIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp HHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred HHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 99999999999999999999998743
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.71 E-value=5.2e-08 Score=73.55 Aligned_cols=74 Identities=24% Similarity=0.392 Sum_probs=59.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
.++|||.|||..+=+ +.|+.+|++||+ +.++...+ +.|-++|.|
T Consensus 19 gt~lfV~nLp~~~te-----~~L~~~F~~~G~-------------------------I~~v~i~~d~~tg~~kG~afV~f 68 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQ-----DELRSLFSSIGE-------------------------VESAKLIRDKVAGHSLGYGFVNY 68 (99)
T ss_dssp CSEEEEESCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEECSSSCCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEeEeeecCCCCcccccEEEEE
Confidence 369999999987644 356678886655 54444433 234589999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..|.|+.|+|.||++
T Consensus 69 ~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 69 VTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 999999999999999999999999999987
No 11
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.9e-07 Score=70.64 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEE
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVN 110 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVV 110 (238)
.-.+||||.||+..+-+ +.|+.+|++||+ +..+...+. .+-++|.
T Consensus 13 ~~~~~l~V~nlp~~~~~-----~~l~~~f~~~G~-------------------------i~~~~i~~~~~g~~~g~afV~ 62 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGW-----KKLKEVFSMAGV-------------------------VVRADILEDKDGKSRGIGTVT 62 (114)
T ss_dssp CCCSCEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECTTCSEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEECCCCCeeeEEEEE
Confidence 33579999999986533 356788886655 444443332 4579999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+.++|.+|...|++..|.|..|+|.|++.
T Consensus 63 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 63 FEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred ECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 9999999999999999999999999999876
No 12
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.71 E-value=6.5e-08 Score=69.53 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=59.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEEEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMRVN 110 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~RiiVV 110 (238)
++||+|.||+..+-+ +.|+.+|++||+ +..+...+ +.|-++|.
T Consensus 4 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~~~i~~~~~~~~~~~g~afV~ 53 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTK-----DHIMEIFSTYGK-------------------------IKMIDMPVERMHPHLSKGYAYVE 53 (88)
T ss_dssp CCEEEEECCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEECCEETTEEEEECSEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------EEEEEEEeCCCCCCCCCcEEEEE
Confidence 679999999986644 356678886655 44444332 56789999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+.++|.+|...|++..+.|+.++|.++.+
T Consensus 54 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 54 FENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred EecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 9999999999999999999999999999976
No 13
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=4.7e-08 Score=71.88 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=59.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEE-ecC--CCCeEEEEeCCH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQ-YLK--SFRRMRVNYESS 114 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv-~Lk--SF~RiiVVF~~~ 114 (238)
+.+|||.||+..+-+ +.|+.+|++| |.+..+. ..+ .-++++|.|.+.
T Consensus 15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~v~~~~~i~~~~~~~~afV~f~~~ 64 (96)
T 2e44_A 15 IRKLQIRNIPPHLQW-----EVLDSLLVQY-------------------------GVVESCEQVNTDSETAVVNVTYSSK 64 (96)
T ss_dssp CCCEEEEEECSSSCH-----HHHHHHHHHH-------------------------SCEEEEEEECCSSSSEEEEEEESSH
T ss_pred CCEEEEEcCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEeecCCCCCEEEEEECCH
Confidence 569999999986544 3566788855 5555552 333 335699999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|.+|...|++..+.|+.|+|.|+++
T Consensus 65 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 65 DQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 999999999999999999999999987
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.4e-07 Score=69.08 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=60.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
+++|||.||+..+-+ +.|+.+|++|| .+..+...+ +.+-++|.|
T Consensus 5 ~~~l~v~nlp~~~t~-----~~l~~~f~~~G-------------------------~v~~v~i~~~~~~~~~~g~afV~f 54 (95)
T 2dnz_A 5 SSGLYVGSLHFNITE-----DMLRGIFEPFG-------------------------KIDNIVLMKDSDTGRSKGYGFITF 54 (95)
T ss_dssp CCEEEEESCCTTCCH-----HHHHHHHTTTS-------------------------CEEEEEEECCSSSCCCCSEEEEEE
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CEeEEEEeecCCCCceeeEEEEEE
Confidence 579999999986544 35677888555 455555544 346899999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+.++|.+|...|++..|.|+.|+|.|++..
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 55 SDSECARRALEQLNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp SCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence 9999999999999999999999999999873
No 15
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.70 E-value=7e-08 Score=74.01 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=61.6
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
++|||.||+..+-+ +.|+.+|++| |.+..+...++.+-++|.|.+.++|.
T Consensus 11 ~~l~V~nLp~~~te-----~~L~~~F~~~-------------------------G~i~~v~i~~~~g~afV~f~~~~~A~ 60 (111)
T 1whx_A 11 TVILAKNLPAGTLA-----AEIQETFSRF-------------------------GSLGRVLLPEGGITAIVEFLEPLEAR 60 (111)
T ss_dssp EEEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCSSSSCEEEEESCHHHHH
T ss_pred CEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEeCCCCEEEEEeCCHHHHH
Confidence 59999999976533 4567888855 55666666677788999999999999
Q ss_pred HHHHHhcCCccCCcceEEEEeCC
Q psy258 119 KARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 119 ~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.|...|++..|.|..|+|.||+.
T Consensus 61 ~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 61 KAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp HHHHHHTTCBSSSSBCEEEEEET
T ss_pred HHHHHhCCCEECCeEEEEEECCC
Confidence 99999999999999999999976
No 16
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=6e-08 Score=69.62 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=61.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..+|+|.||+..+-+ +.|+.+|+ .||.+..+...++.+-++|.|.+.++|
T Consensus 12 ~~~l~V~~l~~~~t~-----~~l~~~f~-------------------------~~G~i~~~~~~~~kg~afV~f~~~~~A 61 (85)
T 2ytc_A 12 ITTLYVGGLGDTITE-----TDLRNHFY-------------------------QFGEIRTITVVQRQQCAFIQFATRQAA 61 (85)
T ss_dssp CCCEEEECCTTTSCH-----HHHHHHHH-------------------------TTSCEEEEEEEGGGTEEEEEESSHHHH
T ss_pred ccEEEEcCCCCCCCH-----HHHHHHHH-------------------------hCCCEeEEEEECCCCEEEEEECCHHHH
Confidence 469999999986543 45667788 456677777777888999999999999
Q ss_pred HHHHHHh-cCCccCCcceEEEEeC
Q psy258 118 AKARINL-HQSVFASSKINVYFVQ 140 (238)
Q Consensus 118 ~~Ar~~L-~~~~f~g~~lrIyFAq 140 (238)
..|...| ++..+.|+.++|.||+
T Consensus 62 ~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 62 EVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHHHHhcCCeeECCCEEEEEecC
Confidence 9999998 8899999999999975
No 17
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.68 E-value=8.4e-08 Score=73.66 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=59.9
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
.+|||.||+..+-+ +.|+.+|++| |.+..+..++..+.++|.|.+.++|.
T Consensus 16 ~~l~V~nLp~~~te-----~~L~~~F~~f-------------------------G~V~~v~i~~~kg~aFVef~~~~~A~ 65 (104)
T 1wex_A 16 PVVHVRGLCESVVE-----ADLVEALEKF-------------------------GTICYVMMMPFKRQALVEFENIDSAK 65 (104)
T ss_dssp SEEEEESCCSSCCH-----HHHHHHHTTT-------------------------SCEEEEEEETTTTEEEEEESSHHHHH
T ss_pred CEEEEeCCCCCCCH-----HHHHHHHHhC-------------------------CCEEEEEEECCCCEEEEEECCHHHHH
Confidence 59999999987644 3466888855 55666666777789999999999999
Q ss_pred HHHHHhcCC--ccCCcceEEEEeCC
Q psy258 119 KARINLHQS--VFASSKINVYFVQP 141 (238)
Q Consensus 119 ~Ar~~L~~~--~f~g~~lrIyFAq~ 141 (238)
.|...|++. .+.|+.|+|.|++.
T Consensus 66 ~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 66 ECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp HHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred HHHHHhccCCceECCEEEEEEEccC
Confidence 999998764 48999999999987
No 18
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=8.4e-08 Score=72.71 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=62.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.||+..+-+ +.|+.+|++||++. ..--.+.+..-++.+-++|.|.+.++|
T Consensus 25 ~~~l~V~nLp~~~t~-----~~l~~~f~~~G~v~-------------------~~~~~~~~~~g~~~g~afV~f~~~~~a 80 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTE-----RDLVSLFARFQEKK-------------------GPPIQFRMMTGRMRGQAFITFPNKEIA 80 (115)
T ss_dssp CSEEEEECCCTTCCH-----HHHHHHTHHHHHSS-------------------SSCCEEEEECSSSCSEEEEECSSHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHHhCCcc-------------------ceEEEEEcCCCccceEEEEEECCHHHH
Confidence 469999999976544 45668899887763 111123333445668899999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+|...|++..+.|+.|+|.|+++
T Consensus 81 ~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 81 WQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp HHHHHHSTTCBCSSCBCEEEECCC
T ss_pred HHHHHHhCCCEeCCcEEEEEEccC
Confidence 999999999999999999999987
No 19
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.66 E-value=2.1e-07 Score=73.15 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=61.8
Q ss_pred CCcEEEecCCCC-CCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 38 PKSLIITNLNPD-LFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~~-vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
..+|||.||+.. +-+ + .|+.+|++| |.+..+..+++.+.++|.|.+.++
T Consensus 25 ~~~l~V~NLp~~~~te-~----~L~~lF~~f-------------------------G~V~~v~i~~~kg~aFVef~~~~~ 74 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSD-S----AVLKLAEPY-------------------------GKIKNYILMRMKSQAFIEMETRED 74 (112)
T ss_dssp CCEEEEESCCCSSCCS-H----HHHTTTTTT-------------------------SCCSEEEEETTTTEEEEECSSHHH
T ss_pred CCEEEEeCCCCccCCH-H----HHHHHHHhc-------------------------CCEEEEEEecCCCEEEEEECCHHH
Confidence 359999999986 655 3 456778855 556666667888999999999999
Q ss_pred HHHHHHHhcC--CccCCcceEEEEeCCCCC
Q psy258 117 AAKARINLHQ--SVFASSKINVYFVQPMTP 144 (238)
Q Consensus 117 A~~Ar~~L~~--~~f~g~~lrIyFAq~~t~ 144 (238)
|..|...|++ ..+.|+.|+|.||+....
T Consensus 75 A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 75 AMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp HHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred HHHHHHHhccCCceECCEEEEEEECccccc
Confidence 9999998875 458999999999987443
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=1.7e-07 Score=69.63 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=60.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|
T Consensus 12 ~~~l~v~nLp~~~t~-----~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f 61 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNE-----QSLEQVFSKYGQ-------------------------ISEVVVVKDRETQRSRGFGFVTF 61 (102)
T ss_dssp CSEEEEESCCTTCCH-----HHHHHHHHHHSC-------------------------CCEEEECCCSSSCSCCSEEEEEC
T ss_pred CCEEEEECCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEeCCCCCCcccEEEEEE
Confidence 579999999976544 356778886654 54555544 346899999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+.++|.+|...|++..|.|+.|+|.|++..
T Consensus 62 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 92 (102)
T 1x5s_A 62 ENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 92 (102)
T ss_dssp SSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 9999999999999999999999999999873
No 21
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=4.7e-08 Score=72.66 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=65.6
Q ss_pred cccccCCCCC-CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCe
Q psy258 28 LDDLINDEQL-PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRR 106 (238)
Q Consensus 28 ~~~~~~~~~~-p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~R 106 (238)
.+++.....- .+||||.||+..+-+ +.|+.+|++|| .+..+...++.+-
T Consensus 16 ~~~~~~~~~~~~~~l~V~nlp~~~~~-----~~l~~~f~~~G-------------------------~i~~~~~~~~~g~ 65 (101)
T 2la4_A 16 VDHIIRSAPPRVTTAYIGNIPHFATE-----ADLIPLFQNFG-------------------------FILDFKHYPEKGC 65 (101)
T ss_dssp HHHHHTTSCSSCCEEEEESCCTTCCH-----HHHHHHHHTTS-------------------------CCSEEEEETTTTE
T ss_pred hhhhhhcCCCCCCEEEEcCCCcccCH-----HHHHHHHHhCC-------------------------CEEEEEEecCCCE
Confidence 4444443332 359999999986644 45667888554 4556666688899
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 107 MRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 107 iiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|.|.+.++|.+|...|++..+.|..++|.||++
T Consensus 66 afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 66 CFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp EEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred EEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 99999999999999999999999999999999875
No 22
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=1.5e-07 Score=70.07 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=61.2
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEe
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNY 111 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF 111 (238)
.-..+|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~g~afV~f 62 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTE-----VLILQLFSQIGP-------------------------CKSCKMITEHTSNDPYCFVEF 62 (103)
T ss_dssp CCCCEEEEESCCTTCCH-----HHHHHHHHHHSC-------------------------EEEEEEECCCCSSCCEEEEEE
T ss_pred CCCCEEEEeCCCccCCH-----HHHHHHHHhcCC-------------------------EeEEEEEecCCCCCCEEEEEE
Confidence 44679999999986543 356778886654 54544444 456799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..+.|+.|+|.|++.
T Consensus 63 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 63 YEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 999999999999999999999999999987
No 23
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.64 E-value=7.5e-08 Score=74.19 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=60.9
Q ss_pred CCcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 38 PKSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
..+|||.||+. .+-+ +.|+.+|++| |.+..+..++..+.++|.|.+.++
T Consensus 15 ~~~l~V~nLp~~~~te-----~dL~~lF~~f-------------------------G~V~~v~i~~~kg~aFVef~~~~~ 64 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLR-----YQLLQLVEPF-------------------------GVISNHLILNKINEAFIEMATTED 64 (102)
T ss_dssp CCEEEEESCCCSSSHH-----HHHHTTTGGG-------------------------SCEEEEEECSSSSCEEEEESSHHH
T ss_pred CCEEEEeCCCCCcCCH-----HHHHHHHHhc-------------------------CCEEEEEEEcCCCEEEEEECCHHH
Confidence 35999999997 6533 3566788855 556677777877889999999999
Q ss_pred HHHHHHHhcCCc--cCCcceEEEEeCC
Q psy258 117 AAKARINLHQSV--FASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~--f~g~~lrIyFAq~ 141 (238)
|..|...|++.. +.|++|+|.||+.
T Consensus 65 A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 65 AQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp HHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred HHHHHHHHcCCCceECCcEEEEEECCC
Confidence 999999998754 8999999999986
No 24
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.64 E-value=1.2e-07 Score=67.89 Aligned_cols=73 Identities=19% Similarity=0.203 Sum_probs=58.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
.++|+|.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|
T Consensus 7 ~~~l~V~nl~~~~~~-----~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f 56 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDD-----KVLHAAFIPFGD-------------------------ITDIQIPLDYETEKHRGFAFVEF 56 (85)
T ss_dssp SSEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEECCEETTTTEECSEEEEEE
T ss_pred CCEEEEECCCCCCCH-----HHHHHHHhccCC-------------------------EEEEEEEECCCCCccccEEEEEE
Confidence 469999999976543 456778886654 44444332 346699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
.+.++|.+|...|++..+.|+.++|.||+
T Consensus 57 ~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 57 ELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 99999999999999999999999999975
No 25
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=5.2e-08 Score=71.38 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=60.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.||+..+-+ +.|+.+|++||+++ ..+.+++.+-++|.|.+.++|
T Consensus 8 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~vv-------------------------~~~~~~~~g~afV~f~~~~~A 57 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTA-----DDLRQLFGDRKLPL-------------------------AGQVLLKSGYAFVDYPDQNWA 57 (93)
T ss_dssp CCCEEEECCCTTCCH-----HHHHHHHHHTTCCC-------------------------SSCEEEETTEEEECCSCHHHH
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHHcCCce-------------------------EEEEEcCCCEEEEEECCHHHH
Confidence 579999999987544 45678888776632 233335678899999999999
Q ss_pred HHHHHHhcC-CccCCcceEEEEeCC
Q psy258 118 AKARINLHQ-SVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~-~~f~g~~lrIyFAq~ 141 (238)
.+|...|++ ..+.|..++|.|+++
T Consensus 58 ~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 58 IRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp HHHHHHHTTTCEETTEECEEEECCC
T ss_pred HHHHHHccCCeeECCEEEEEEEccC
Confidence 999999999 999999999999987
No 26
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.62 E-value=3.6e-07 Score=68.17 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=61.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-------CCeEEEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-------FRRMRVN 110 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-------F~RiiVV 110 (238)
..+|||.||+..+-+ +.|+.+|++| |.+..+...+. .+-++|.
T Consensus 15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~~g~afV~ 64 (107)
T 2cph_A 15 TSKILVRNIPFQANQ-----REIRELFSTF-------------------------GELKTVRLPKKMTGTGAHRGFGFVD 64 (107)
T ss_dssp CCCEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCCCCSSSCSSCSEEEEE
T ss_pred CCEEEEeCCCCcCCH-----HHHHHHHHcc-------------------------CCeEEEEEecCCCCCCCcCceEEEE
Confidence 469999999986544 3467788855 55656665554 4679999
Q ss_pred eCCHHHHHHHHHHh-cCCccCCcceEEEEeCCCC
Q psy258 111 YESSAAAAKARINL-HQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 111 F~~~eaA~~Ar~~L-~~~~f~g~~lrIyFAq~~t 143 (238)
|.+.++|.+|...| ++..|.|..|+|.|+++..
T Consensus 65 f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 65 FITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp ESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred ECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 99999999999999 8999999999999998743
No 27
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=1.5e-07 Score=71.11 Aligned_cols=75 Identities=12% Similarity=0.211 Sum_probs=63.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..+|||.||+..+-+ +.|+.+|++ ||.+..+...+..+-++|.|.+.++|
T Consensus 25 ~~~l~V~nl~~~~t~-----~~l~~~F~~-------------------------~G~i~~v~i~~~~g~afV~f~~~~~a 74 (109)
T 1x4g_A 25 NCTVYCGGIASGLTD-----QLMRQTFSP-------------------------FGQIMEIRVFPEKGYSFVRFSTHESA 74 (109)
T ss_dssp CCEEEEECCSSCCCH-----HHHHHHHHH-------------------------HSCEEEEEEETTTTEEEEEESSHHHH
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHh-------------------------cCCeEEEEEeCCCCEEEEEECCHHHH
Confidence 359999999986644 356677884 46677777777788999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+|...|++..|.|..|+|.|+++.
T Consensus 75 ~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 75 AHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp HHHHHHHTTCEETTEECEEECCCCC
T ss_pred HHHHHHcCCCEECCcEEEEEecCCC
Confidence 9999999999999999999999873
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.62 E-value=2.7e-07 Score=70.00 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=60.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..||||.||+..+-+ +.|+.+|++||+ +..+...+. .+-++|.|
T Consensus 15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f 64 (115)
T 2dgo_A 15 HFHVFVGDLSPEITT-----EDIKAAFAPFGR-------------------------ISDARVVKDMATGKSKGYGFVSF 64 (115)
T ss_dssp CEEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEEcCCCCCcceEEEEEE
Confidence 359999999986544 356788886654 555544443 35799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
.+.++|.+|...|++..|.|+.|+|.|++...
T Consensus 65 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 65 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp SSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 99999999999999999999999999998743
No 29
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.62 E-value=1.6e-07 Score=74.26 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=65.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.||+..+-. +.|+.+|++||+|.... +.-+ -++.....-++.|-++|.|.+.++|
T Consensus 45 ~~~l~V~nLp~~~te-----~~L~~~F~~~G~i~~~~----------~~~~----~di~~~~~g~~~g~afV~f~~~~~A 105 (143)
T 3egn_A 45 NCRIYVKNLAKHVQE-----KDLKYIFGRYVDFSSET----------QRIM----FDIRLMKEGRMKGQAFIGLPNEKAA 105 (143)
T ss_dssp CSEEEEEEECTTCCH-----HHHHHHHGGGCCTTCHH----------HHHH----CEEEEEEETTTEEEEEEECSSHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHHhCCccccc----------ccce----eeEEeccCCCcccEEEEEeCCHHHH
Confidence 359999999986544 45678999998876100 0000 0122224456778899999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPMTP 144 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~t~ 144 (238)
..|...|++..|.|..|+|.||++..+
T Consensus 106 ~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 106 AKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp HHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999987443
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.61 E-value=6.3e-08 Score=71.78 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=56.8
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcC-CCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFG-KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVN 110 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVV 110 (238)
.++|+|.|||..+-+ +.|+.+|++|| +|. ++... ++.|=++|.
T Consensus 1 S~~i~v~nLp~~~te-----~~l~~~F~~~G~~v~-------------------------~v~i~~d~~t~~~rg~aFV~ 50 (91)
T 2lxi_A 1 SNIVMLRMLPQAATE-----DDIRGQLQSHGVQAR-------------------------EVRLMRNKSSGQSRGFAFVE 50 (91)
T ss_dssp CCEEEEETCCSSCCH-----HHHHHHHHHHTCCCS-------------------------BCCSSSCSSSCCCSSEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHHhCCEeE-------------------------EEEEEecCCCCCcCceEEEE
Confidence 379999999987655 35667888776 433 22222 344669999
Q ss_pred eCCHHHHHHHHHHhc-CCccCCcceEEEEeCC
Q psy258 111 YESSAAAAKARINLH-QSVFASSKINVYFVQP 141 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~-~~~f~g~~lrIyFAq~ 141 (238)
|.+.++|.+|+..++ +..+.|+.++|.||++
T Consensus 51 F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 51 FSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp CSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred ecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 999999999998875 5679999999999987
No 31
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.61 E-value=1.9e-07 Score=68.90 Aligned_cols=74 Identities=22% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
.+||||.||+..+-+ +.|+.+|++| |.+..+...+. .+-++|.|
T Consensus 8 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f 57 (99)
T 1whw_A 8 SGRLFVRNLSYTSSE-----EDLEKLFSAY-------------------------GPLSELHYPIDSLTKKPKGFAFVTF 57 (99)
T ss_dssp CEEEEEECCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCCCTTTCCCCSEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEeEEEEEecCCCCCcCeEEEEEE
Confidence 469999999986544 3567788855 44555554443 36799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..|.|+.|+|.|++.
T Consensus 58 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 58 MFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp SSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 999999999999999999999999999987
No 32
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=4.1e-07 Score=67.32 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=63.4
Q ss_pred CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258 35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS 114 (238)
Q Consensus 35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ 114 (238)
.....+|||.||+..+-+ +.|+.+|++||+|. +.+..-++.+-++|.|.+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~-----~~l~~~F~~~G~v~------------------------~~~~~~~~~g~afV~f~~~ 66 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARV-----SDLKRALRELGSVP------------------------LRLTWQGPRRRAFLHYPDS 66 (97)
T ss_dssp SCCCCEEEEECCCTTCCH-----HHHHHHHHHTTCCC------------------------SEEEEETTTTEEEEECSSH
T ss_pred CCCCCEEEEeCCCCcCcH-----HHHHHHHHhcCCEE------------------------EEEEcCCCCcEEEEEECCH
Confidence 345679999999986654 35678899887743 2333346778899999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|..|...|++..|.|+.++|.++++
T Consensus 67 ~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 67 AAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp HHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 999999999999999999999999987
No 33
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=4.8e-07 Score=67.85 Aligned_cols=77 Identities=23% Similarity=0.171 Sum_probs=61.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCC-ceEEEec-------CCCCeEEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGK-PKSFQYL-------KSFRRMRV 109 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-iv~fv~L-------kSF~RiiV 109 (238)
.+||||.||+..+-+ +.|+.+|++| |. +..+... ++.+-++|
T Consensus 8 ~~~l~V~nLp~~~t~-----~~l~~~f~~~-------------------------G~~v~~v~i~~~~~~~g~~~g~afV 57 (109)
T 2dis_A 8 NCRLFIGGIPKMKKR-----EEILEEIAKV-------------------------TEGVLDVIVYASAADKMKNRGFAFV 57 (109)
T ss_dssp SEEEEEECCCTTSCH-----HHHHHHHHHH-------------------------STTEEEEECCSSSCTTTTTCCEEEE
T ss_pred CCEEEEeCCCCcCCH-----HHHHHHHHHh-------------------------cCCceEEEEEccCCCCCCcCcEEEE
Confidence 469999999976543 4566777845 55 5555555 56678999
Q ss_pred EeCCHHHHHHHHHHhc--CCccCCcceEEEEeCCCCC
Q psy258 110 NYESSAAAAKARINLH--QSVFASSKINVYFVQPMTP 144 (238)
Q Consensus 110 VF~~~eaA~~Ar~~L~--~~~f~g~~lrIyFAq~~t~ 144 (238)
.|.+.++|..|...|+ +..+.|..++|.||++...
T Consensus 58 ~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 58 EYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp EESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred EecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 9999999999999997 6889999999999987443
No 34
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.61 E-value=1.3e-07 Score=79.21 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=57.5
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-C-CCCeEEEEeCCHHHH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-K-SFRRMRVNYESSAAA 117 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-k-SF~RiiVVF~~~eaA 117 (238)
+|||.||+..+=+ +.|+.+|++||+|. .+... + +-+.++|.|.+.++|
T Consensus 48 ~l~VgNL~~~vte-----d~L~~~Fs~fG~V~-------------------------~V~i~~k~~rgfAFVeF~d~~~A 97 (164)
T 1sjr_A 48 RIIVENLFYPVTL-----DVLHQIFSKFGTVL-------------------------KIITFTKNNQFQALLQYADPVSA 97 (164)
T ss_dssp EEEECSCCSCCCH-----HHHHHHHHHHSCEE-------------------------EEEEEESSSCEEEEEEESCHHHH
T ss_pred EEEEeCcCCCCCH-----HHHHHHHHhcCCEE-------------------------EEEEEeCCCCCEEEEEECCHHHH
Confidence 7899999876544 35778899676644 43333 2 234799999999999
Q ss_pred HHHHHHhcCCccCC--cceEEEEeCCC
Q psy258 118 AKARINLHQSVFAS--SKINVYFVQPM 142 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g--~~lrIyFAq~~ 142 (238)
..|+..|++..|.+ ..|+|.|+++.
T Consensus 98 ~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 98 QHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp HHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred HHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 99999999999966 89999999883
No 35
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=1.5e-07 Score=70.05 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=60.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~ 113 (238)
..+|||.||+..+-+ +.|+.+|++|| .+..+... ++.+-++|.|.+
T Consensus 15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~g~~~g~afV~f~~ 64 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDD-----ERLRKAFSPFG-------------------------TITSAKVMMEGGRSKGFGFVCFSS 64 (103)
T ss_dssp CCCEEEECCCTTCCH-----HHHHHTTTTTS-------------------------CEEEEEEEECSSSEEEEEEEEESS
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CEEEEEEEcCCCCcCEEEEEEECC
Confidence 469999999986544 45667888554 45555555 345679999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.++|.+|...|++..|.|+.|+|.|+++.
T Consensus 65 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 65 PEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp HHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 99999999999999999999999999873
No 36
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.60 E-value=1.1e-07 Score=71.91 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=58.6
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~ 112 (238)
+||||.||+..+=+ +.|+.+|++||++. +.++... ++.|=++|.|.
T Consensus 10 ~tlfV~nL~~~~te-----e~L~~~F~~~G~i~-----------------------v~~v~i~~d~~tg~srG~aFV~f~ 61 (95)
T 2lkz_A 10 DTIILRNIAPHTVV-----DSIMTALSPYASLA-----------------------VNNIRLIKDKQTQQNRGFAFVQLS 61 (95)
T ss_dssp CEEEEESCCTTCCH-----HHHHHHSTTTCCCC-----------------------GGGEECCCCSSSSSCSSEEEEECS
T ss_pred CEEEEeCCCCcCCH-----HHHHHHHHhhCCcc-----------------------EEEEEEEecCCCCCCceEeEEEEC
Confidence 79999999986544 46678899887642 2333332 34567999999
Q ss_pred CHHHHHHHHHHhcCCc----cCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSV----FASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~----f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++.. +.|+.++|.||++
T Consensus 62 ~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 62 SAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp SSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 9999999999999964 7799999999986
No 37
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=3.7e-07 Score=68.00 Aligned_cols=76 Identities=28% Similarity=0.333 Sum_probs=60.8
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC----CCeEEEEeC
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS----FRRMRVNYE 112 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS----F~RiiVVF~ 112 (238)
-+.+|||.||+..+-+ +.|+.+|++||+ +..+...+. .+-++|.|.
T Consensus 14 ~~~~l~V~nlp~~~t~-----~~l~~~f~~~G~-------------------------v~~v~i~~~~~~~~g~afV~f~ 63 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRD-----PDLRQMFGQFGK-------------------------ILDVEIIFNERGSKGFGFVTFE 63 (103)
T ss_dssp CCCEEEEESCCTTCCH-----HHHHHHGGGTSC-------------------------EEEEEEECCTTTTCCEEEEEES
T ss_pred CCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCcEEEEEEEC
Confidence 3579999999986544 346788886654 545444433 567999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
+.++|.+|...|++..|.|+.|+|.|+++.
T Consensus 64 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 64 NSADADRAREKLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence 999999999999999999999999999873
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.9e-07 Score=68.23 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=58.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
.++|||.||+..+-+ +.|+.+|++| |.+..+...+ +.+-++|.|
T Consensus 16 ~~~l~V~nlp~~~t~-----~~l~~~f~~~-------------------------G~v~~v~i~~~~~~~~~~g~afV~f 65 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTN-----NDLYRIFSKY-------------------------GKVVKVTIMKDKDTRKSKGVAFILF 65 (94)
T ss_dssp TTSEEEESCCTTSCH-----HHHHHHTTTT-------------------------SCEEEEEECCCSSSCCCTTCEEEEE
T ss_pred CCEEEEECCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEeCCCCCCcccEEEEEE
Confidence 469999999976544 3467788855 5555555544 345799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
.+.++|.+|...|++..|.|+.|+|.||+
T Consensus 66 ~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 66 LDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp SCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 99999999999999999999999999985
No 39
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.59 E-value=1.5e-07 Score=66.98 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=58.3
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~ 112 (238)
.||+|.||+..+-+ +.|+.+|++||+ +..+...+. .|-++|.|.
T Consensus 2 ~~l~V~nlp~~~t~-----~~l~~~f~~~G~-------------------------i~~~~i~~~~~~~~~~g~afV~f~ 51 (83)
T 3md1_A 2 FNLFVGDLNVNVDD-----ETLRNAFKDFPS-------------------------YLSGHVMWDMQTGSSRGYGFVSFT 51 (83)
T ss_dssp EEEEEECCCTTCCH-----HHHHHHHTTSTT-------------------------EEEEEEEECTTTCCEEEEEEEEES
T ss_pred eEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEEcCCCCCccceEEEEEC
Confidence 48999999986543 456678885554 555444433 456999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..+.|..++|.|+++
T Consensus 52 ~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 52 SQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 99999999999999999999999999986
No 40
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=2.4e-07 Score=70.82 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=59.9
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
++|||.||+..+-+ +.|+.+|++| |.+..+..++..+.++|.|.+.++|.
T Consensus 16 ~~l~V~nLp~~~te-----~~L~~~F~~f-------------------------G~v~~v~i~~~kg~aFVef~~~~~A~ 65 (101)
T 2cq1_A 16 RVLHIRKLPGEVTE-----TEVIALGLPF-------------------------GKVTNILMLKGKNQAFLELATEEAAI 65 (101)
T ss_dssp SEEEEESCCTTCCH-----HHHHHTTTTT-------------------------SCEEEEEEETTTTEEEEEESSHHHHH
T ss_pred CEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEECCCCEEEEEECCHHHHH
Confidence 59999999986644 3466788855 55666777778889999999999999
Q ss_pred HHHHHhc--CCccCCcceEEEEeCC
Q psy258 119 KARINLH--QSVFASSKINVYFVQP 141 (238)
Q Consensus 119 ~Ar~~L~--~~~f~g~~lrIyFAq~ 141 (238)
.|...|+ +..+.|++|+|.||+.
T Consensus 66 ~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 66 TMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp HHHHHHHHSCCEETTEECEEEECSC
T ss_pred HHHHHhccCCceECCcEEEEEEcCc
Confidence 9999875 4568999999999987
No 41
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=2.8e-07 Score=67.13 Aligned_cols=73 Identities=29% Similarity=0.302 Sum_probs=59.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.||+..+-+ +.|+.+|++||+ +..+...| +-++|.|.+.++|
T Consensus 8 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~~~~--g~afV~f~~~~~A 55 (90)
T 2dnq_A 8 MVKLFIGNLPREATE-----QEIRSLFEQYGK-------------------------VLECDIIK--NYGFVHIEDKTAA 55 (90)
T ss_dssp CEEEEEESCCSSCCH-----HHHHHHHHTSSC-------------------------EEEEEEET--TEEEEEESSHHHH
T ss_pred CeEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------EEEEEEEC--CEEEEEECCHHHH
Confidence 469999999987644 346788885554 55555444 5799999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+|...|++..+.|+.|+|.|+++.
T Consensus 56 ~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 56 EDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp HHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred HHHHHHhcCCccCCcEEEEEECCCC
Confidence 9999999999999999999999873
No 42
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.59 E-value=1.4e-07 Score=69.09 Aligned_cols=74 Identities=19% Similarity=0.016 Sum_probs=54.0
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcC--CCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFG--KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES 113 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~ 113 (238)
||||.||+..+-+ +.|+.+|++|| ++. -+.+..= ++.|-++|.|.+
T Consensus 3 ~l~V~nL~~~~t~-----~~l~~~F~~~G~~~v~-----------------------~v~i~~~~~~g~~kG~afV~f~~ 54 (90)
T 3p5t_L 3 ALYIGNLTWWTTD-----EDLTEAVHSLGVNDIL-----------------------EIKFFENRANGQSKGFALVGVGS 54 (90)
T ss_dssp -CEEESCCTTCCH-----HHHHHHHHTTTCCCCC-----------------------CEEEEECTTTCCEEEEEEECC-C
T ss_pred EEEEeCCCCCCCH-----HHHHHHHHHhCCCceE-----------------------EEEEEecCCCCccCcEEEEEECC
Confidence 7999999976543 45678899777 543 1222222 223459999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.++|.+|...|++..|.|+.|+|.++.+
T Consensus 55 ~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 55 EASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp HHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred HHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 9999999999999999999999999887
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.59 E-value=2.6e-07 Score=68.08 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=59.4
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~ 112 (238)
++|||.||+..+-+ +.|+.+|++|| .+..+...+. .|-++|.|.
T Consensus 3 ~~l~V~nLp~~~t~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~~g~~~g~afV~f~ 52 (96)
T 2x1f_A 3 RVVYLGSIPYDQTE-----EQILDLCSNVG-------------------------PVINLKMMFDPQTGRSKGYAFIEFR 52 (96)
T ss_dssp SEEEEESCCTTCCH-----HHHHHHHHTTS-------------------------CEEEEECCBCTTTCCBCSEEEEEES
T ss_pred cEEEEECCCCCCCH-----HHHHHHHHhcC-------------------------CEEEEEEEeCCCCCccceEEEEEEC
Confidence 59999999976543 45678888555 4555554433 567999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..+.|+.++|.|+++
T Consensus 53 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 53 DLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 99999999999999999999999999987
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.58 E-value=1.4e-07 Score=68.56 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF~~ 113 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|.+
T Consensus 8 ~~~l~V~nlp~~~t~-----~~l~~~f~~~G~-------------------------v~~~~i~~~~g~~~g~afV~f~~ 57 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTW-----KMLKDKFNECGH-------------------------VLYADIKMENGKSKGCGVVKFES 57 (92)
T ss_dssp CCEEEECSCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEESSSCEEEEEEEEESS
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEEccCCCcceEEEEEECC
Confidence 579999999976544 456788886655 44444433 34679999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.++|.+|...|++..|.|+.|+|.|+++.
T Consensus 58 ~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 58 PEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp HHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred HHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 99999999999999999999999999873
No 45
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.58 E-value=3e-07 Score=79.25 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=66.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---CCCeEEEEeCCH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---SFRRMRVNYESS 114 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---SF~RiiVVF~~~ 114 (238)
.+||||.||+..+-+ ++|++.|..+|++||+ +..+...+ +.|-++|.|.+.
T Consensus 9 ~~~l~V~nlp~~~~~-~~l~~~L~~~F~~~G~-------------------------i~~v~~~~~~~~~g~afV~f~~~ 62 (282)
T 3pgw_A 9 NHTIYINNLNEKIKK-DELKKSLYAIFSQFGQ-------------------------ILDILVSRSLKMRGQAFVIFKEV 62 (282)
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHHHHhccCC-------------------------eEEEEEcCCCCcceEEEEEECCH
Confidence 359999999988766 7898889999996655 44444443 557899999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
++|.+|...|++..|.|+.|+|.|++...
T Consensus 63 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 63 SSATNALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred HHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence 99999999999999999999999997644
No 46
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.8e-07 Score=68.32 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=59.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~ 112 (238)
+++|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|.
T Consensus 17 ~~~l~v~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f~ 66 (100)
T 2do4_A 17 KHKLFISGLPFSCTK-----EELEEICKAHGT-------------------------VKDLRLVTNRAGKPKGLAYVEYE 66 (100)
T ss_dssp CSCEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECTTSCEEEEEEEEES
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------eEEEEEEECCCCCEEeEEEEEEC
Confidence 469999999986544 356788886654 44444443 2356999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..+.|..|+|.|+++
T Consensus 67 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 67 NESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp SHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 99999999999999999999999999987
No 47
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=2.4e-07 Score=67.78 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=59.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.||+..+-+ +.|+.+|++|| .+..+...+. -++|.|.+.++|
T Consensus 10 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G-------------------------~v~~v~~~~~--~afV~f~~~~~a 57 (92)
T 2dgt_A 10 STKLHVGNISPTCTN-----QELRAKFEEYG-------------------------PVIECDIVKD--YAFVHMERAEDA 57 (92)
T ss_dssp SEEEEEESCCSSCCH-----HHHHHHHHTTS-------------------------CCCEEEECSS--EEEEEESCHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CeEEEEEECC--EEEEEECCHHHH
Confidence 469999999987543 35667888555 4555555554 799999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+|...|++..|.|+.|+|.|+++
T Consensus 58 ~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 58 VEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp HHHHHHHTTEEETTEEEEEEESSC
T ss_pred HHHHHHhCCCeeCCcEEEEEEccC
Confidence 999999999999999999999987
No 48
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.57 E-value=2.3e-07 Score=68.86 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=60.4
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-CCCeEEEEeCCHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-SFRRMRVNYESSAAA 117 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-SF~RiiVVF~~~eaA 117 (238)
+||||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|.+.++|
T Consensus 1 ~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~afV~f~~~~~a 50 (101)
T 2hvz_A 1 MKVYVGNLGTGAGK-----GELERAFSYYGP-------------------------LRTVWIARNPPGFAFVEFEDPRDA 50 (101)
T ss_dssp CEEEEECCCSSCSH-----HHHHHHHHHHCC-------------------------CSEEEEESSSSSEEEEECSSHHHH
T ss_pred CEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEeeCCCCEEEEEECCHHHH
Confidence 48999999986544 356678886654 55555555 478899999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+|...|++..+.|..++|.|++..
T Consensus 51 ~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 51 EDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp HHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred HHHHHHHCCCeECCcEEEEEEccCC
Confidence 9999999999999999999999873
No 49
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.57 E-value=2.3e-07 Score=73.95 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=57.1
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC-eEEEEeCCHHHHH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR-RMRVNYESSAAAA 118 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~-RiiVVF~~~eaA~ 118 (238)
.|||.||+..+=+ +.|+.+|++||+|. .+...+.-| +++|.|.+.++|.
T Consensus 27 ~l~V~NL~~~vt~-----~~L~~~Fs~yG~V~-------------------------~v~i~~~~Gf~aFVef~~~~~A~ 76 (124)
T 2e5i_A 27 LLSIQNPLYPITV-----DVLYTVCNPVGKVQ-------------------------RIVIFKRNGIQAMVEFESVLCAQ 76 (124)
T ss_dssp EEEEESCCSCCCH-----HHHHHHHTTTSCEE-------------------------EEEEEESSSEEEEEEESSHHHHH
T ss_pred EEEEcCcCCCCCH-----HHHHHHHHhcCCEE-------------------------EEEEEeCCCCEEEEEECCHHHHH
Confidence 3578999976544 36789999776654 332222237 6999999999999
Q ss_pred HHHHHhcCCccCC--cceEEEEeCCCC
Q psy258 119 KARINLHQSVFAS--SKINVYFVQPMT 143 (238)
Q Consensus 119 ~Ar~~L~~~~f~g--~~lrIyFAq~~t 143 (238)
.|+..|+|..|.| ..|+|.||++..
T Consensus 77 ~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 77 KAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp HHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred HHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 9999999999987 479999998743
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.57 E-value=3.6e-07 Score=68.11 Aligned_cols=75 Identities=24% Similarity=0.250 Sum_probs=59.8
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEEe
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVNY 111 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVVF 111 (238)
-+++|||.||+..+-+ +.|+.+|++||+ +..+...+. .+-++|.|
T Consensus 14 ~~~~l~v~nLp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f 63 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSE-----EDVLRLFQPFGV-------------------------IDECTVLRGPDGSSKGCAFVKF 63 (105)
T ss_dssp CCCEEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECSSSCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEECCCCCcCcEEEEEe
Confidence 3579999999986644 456788886655 444444433 46799999
Q ss_pred CCHHHHHHHHHHhcCCccCC---cceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFAS---SKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g---~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..+.+ ..|+|.|++.
T Consensus 64 ~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 64 SSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp SSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred CCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 99999999999999999888 8999999987
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.57 E-value=1.6e-07 Score=69.26 Aligned_cols=74 Identities=26% Similarity=0.260 Sum_probs=59.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---------CCCCeEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---------KSFRRMR 108 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---------kSF~Rii 108 (238)
.++|||.||+..+-+ +.|+.+|++||+ +..+... ++.+-++
T Consensus 5 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~gt~~~~g~af 54 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTE-----ETLKGVFSKVGA-------------------------IKSCTISKKKNKAGVLLSMGFGF 54 (98)
T ss_dssp CCCEEEESCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEEEECTTCCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCCCcCcccEEE
Confidence 479999999986544 456778886655 4444443 3446799
Q ss_pred EEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 109 VNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 109 VVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.|.+.++|.+|...|++..|.|+.|+|.|++.
T Consensus 55 V~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 55 VEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 87 (98)
T ss_dssp EEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred EEECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence 999999999999999999999999999999987
No 52
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.56 E-value=3.6e-07 Score=68.94 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=62.9
Q ss_pred CCCCcEEEecCCCCCCCC-hHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEE
Q psy258 36 QLPKSLIITNLNPDLFKD-DALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVN 110 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~-~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVV 110 (238)
...++|||.||+..+=.. +...+.|+.+|++||+ +..+... ++.|-++|.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~-------------------------v~~v~i~~~~g~~~G~afV~ 67 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK-------------------------ITNDFYPEEDGKTKGYIFLE 67 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSC-------------------------EEEEECCCBTTBSCCEEEEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCC-------------------------EEEEEeeCCCCCeeeEEEEE
Confidence 456799999999644210 1267788999996655 4444433 345789999
Q ss_pred eCCHHHHHHHHHHhcCCccCCc-ceEEEEeCC
Q psy258 111 YESSAAAAKARINLHQSVFASS-KINVYFVQP 141 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~-~lrIyFAq~ 141 (238)
|.+.++|.+|...|++..|.|+ .|+|.++..
T Consensus 68 f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 68 YASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp ECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred ECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 9999999999999999999998 999999875
No 53
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.56 E-value=1.7e-07 Score=75.61 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=57.3
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC--eEEEEeCCHHHH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR--RMRVNYESSAAA 117 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~--RiiVVF~~~eaA 117 (238)
.|||.||+..+-+ +.|+.+|++||+|. ++...+.-+ +++|.|.+.++|
T Consensus 30 ~I~V~NL~~~vte-----~~L~~lFs~yG~V~-------------------------~V~i~~~~~gfqAFVef~~~~~A 79 (130)
T 3zzy_A 30 RIIVENLFYPVTL-----DVLHQIFSKFGTVL-------------------------KIITFTKNNQFQALLQYADPVSA 79 (130)
T ss_dssp EEEEESCCSCCCH-----HHHHHHHTTSSCEE-------------------------EEEEEEETTEEEEEEEESCHHHH
T ss_pred EEEECCCCCCCCH-----HHHHHHHhCcCCEE-------------------------EEEEEcCCCCcEEEEEECCHHHH
Confidence 7889999876544 35778999776654 333333222 499999999999
Q ss_pred HHHHHHhcCCccCC--cceEEEEeCCC
Q psy258 118 AKARINLHQSVFAS--SKINVYFVQPM 142 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g--~~lrIyFAq~~ 142 (238)
..|++.|+|..|+| ..|||.||++.
T Consensus 80 ~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 80 QHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp HHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred HHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 99999999999988 78999999873
No 54
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1.7e-07 Score=68.34 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=58.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
.++|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|
T Consensus 15 ~~~l~v~nlp~~~t~-----~~l~~~f~~~G~-------------------------v~~v~i~~~~~~~~~~g~afV~f 64 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTE-----RDLREVFSKYGP-------------------------IADVSIVYDQQSRRSRGFAFVYF 64 (95)
T ss_dssp GGCEEEESCCSSCCH-----HHHHHHHHTTSC-------------------------EEEEEEEECSSSSSEEEEEEEEE
T ss_pred CCEEEEECCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEEcCCCCCcccEEEEEE
Confidence 359999999986544 356788886654 44444432 235699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..+.|+.++|.|+++
T Consensus 65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 65 ENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 999999999999999999999999999875
No 55
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=4.8e-07 Score=65.93 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=59.8
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..+|||.||+..+-+ +.|+.+|++| |.+..+...+. -++|.|.+.++|
T Consensus 9 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~v~~~~~~~~--~afV~f~~~~~a 56 (90)
T 2dnp_A 9 TWKIFVGNVSAACTS-----QELRSLFERR-------------------------GRVIECDVVKD--YAFVHMEKEADA 56 (90)
T ss_dssp SCCEEEESCCTTCCH-----HHHHHHHHHH-------------------------SCEEEEEECSS--CEEEEESCHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHcC-------------------------CCEEEEEEECC--EEEEEECCHHHH
Confidence 569999999986544 3566778855 55666666655 799999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+|...|++..+.|+.|+|.|++.
T Consensus 57 ~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 57 KAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp HHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHhCCCEECCcEEEEEECCC
Confidence 999999999999999999999987
No 56
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=3.7e-07 Score=68.75 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=59.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---CCCeEEEEeCCH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---SFRRMRVNYESS 114 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---SF~RiiVVF~~~ 114 (238)
.++|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|.+.
T Consensus 22 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------v~~~~i~~~~~~~g~afV~f~~~ 71 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRT-----KDIEDVFYKYGA-------------------------IRDIDLKNRRGGPPFAFVEFEDP 71 (109)
T ss_dssp SSEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEECCSSSSSCCEEEEESCH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEECCCCCcEEEEEECCH
Confidence 469999999986543 456788886655 44443333 345799999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|.+|...|++..|.|+.|+|.|++.
T Consensus 72 ~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 72 RDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 999999999999999999999999987
No 57
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.54 E-value=3e-07 Score=66.05 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=58.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..+|+|.||+..+-+ +.|+.+|++||+ +..+...+. .+-++|.|
T Consensus 6 ~~~l~v~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f 55 (87)
T 3bs9_A 6 HFHVFVGDLSPEITT-----AAIAAAFAPFGR-------------------------ISDARVVKDMATGKSKGYGFVSF 55 (87)
T ss_dssp CEEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred ceEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EeEEEEEecCCCCccceEEEEEE
Confidence 359999999986544 456788886654 444444433 35799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..+.|+.++|.|+++
T Consensus 56 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 56 FNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 999999999999999999999999999986
No 58
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=4e-07 Score=67.75 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=60.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
..||||.||+..+-+ +.|+.+|++|| .+..+...+ +.+-++|.|
T Consensus 13 ~~~l~V~nLp~~~t~-----~~l~~~f~~~G-------------------------~i~~v~i~~~~~~~~~~g~afV~f 62 (103)
T 2dnm_A 13 MITLKVDNLTYRTSP-----DSLRRVFEKYG-------------------------RVGDVYIPREPHTKAPRGFAFVRF 62 (103)
T ss_dssp CCEEEEESCCTTCCH-----HHHHHHHTTTS-------------------------CEEEEECCBCSSSCSBCSCEEEEE
T ss_pred CeEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CEEEEEEEeCCCCCCCCeEEEEEE
Confidence 479999999986544 34677888554 455554443 346799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+.++|.+|...|++..|.|+.|+|.|++..
T Consensus 63 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 63 HDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp SSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 9999999999999999999999999999873
No 59
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=3.5e-07 Score=66.99 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=60.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEE-EecC------CCCeEEEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSF-QYLK------SFRRMRVN 110 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~f-v~Lk------SF~RiiVV 110 (238)
.++|||.||+..+-+ +.|+.+|++||+|. .+ ...+ +.+-++|.
T Consensus 5 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i~-------------------------~~~~i~~~~~~g~~~g~afV~ 54 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDE-----KLLYDTFSAFGVIL-------------------------QTPKIMRDPDTGNSKGYAFIN 54 (96)
T ss_dssp CCEEEEECCCTTCCH-----HHHHHHHHTTSCBS-------------------------SCCEECCCTTTCSCCSEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCCee-------------------------EEEEEEEcCCCCCcCeEEEEE
Confidence 469999999986543 45778888776654 33 2222 35689999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
|.+.++|.+|...|++..+.|+.|+|.|+++..
T Consensus 55 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 55 FASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp BSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 999999999999999999999999999998733
No 60
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.53 E-value=3.6e-07 Score=69.66 Aligned_cols=77 Identities=22% Similarity=0.256 Sum_probs=60.4
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEE
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVN 110 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVV 110 (238)
-+.+|||.||+..+-+ +.|+.+|++||+ +..+...+ +.|-++|.
T Consensus 25 ~~~~l~V~nLp~~~te-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~ 74 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITE-----DMLRGIFEPFGR-------------------------IESIQLMMDSETGRSKGYGFIT 74 (108)
T ss_dssp SCEEEEEECCCSSCCH-----HHHHHHHTTTSC-------------------------EEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEEcCCCCccceEEEEE
Confidence 3469999999986544 356788886655 44444432 24679999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
|.+.++|.+|...|++..+.|+.|+|.|+++.+
T Consensus 75 F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 75 FSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp ESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 999999999999999999999999999998743
No 61
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.53 E-value=2.4e-07 Score=69.28 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=58.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-----CCCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-----KSFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-----kSF~RiiVVF~ 112 (238)
..+|+|.||+..+-+ +.|+.+|++|| .+..+... ++.+-++|.|.
T Consensus 29 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~g~~~g~afV~f~ 78 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSD-----ADIQELFAEFG-------------------------TLKKAAVHYDRSGRSLGTADVHFE 78 (107)
T ss_dssp SEEEEEESCCTTCCH-----HHHHHHHHTTS-------------------------CEEEEEEEECTTSCEEEEEEEEES
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CeEEEEEEECCCCCcceEEEEEEC
Confidence 469999999986544 34667888554 45554444 33467999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
+.++|.+|...|++..+.|+.|+|.|+.
T Consensus 79 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 79 RKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 9999999999999999999999999985
No 62
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=4.8e-07 Score=66.61 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeC
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYE 112 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~ 112 (238)
+-+.+|+|.||+..+-+ +.|+.+|++||++. .+.-+..- ++.+-++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~-----~~l~~~F~~~G~v~----------------------~~~~~~~~~~g~~~g~afV~f~ 65 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSI-----DEILDFFYGYQVIP----------------------GSVCLKYNEKGMPTGEAMVAFE 65 (98)
T ss_dssp CSSEEEEEESCCTTCCH-----HHHHHHTTTSCCCT----------------------TTCEEEECSSSCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCH-----HHHHHHHHHcCCcc----------------------ceEEEEECCCCCeeeEEEEEEC
Confidence 34579999999976544 45778899887764 11111111 23466999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..|.|+.++|.|+..
T Consensus 66 ~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 66 SRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp CHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 99999999999999999999999999865
No 63
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.53 E-value=2.3e-07 Score=67.86 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=58.7
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVVF~ 112 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+...+. .+-++|.|.
T Consensus 16 ~~~l~v~nlp~~~~~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f~ 65 (95)
T 2ywk_A 16 DRTVFVGNLEARVRE-----EILYELFLQAGP-------------------------LTKVTICKDREGKPKSFGFVCFK 65 (95)
T ss_dssp GGEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTSCEEEEEEEEES
T ss_pred CCEEEEECCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEEECCCCCCceEEEEEEC
Confidence 469999999986543 457788886655 444444332 457999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..|.|+.|+|.|++.
T Consensus 66 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 66 HPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp STHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 99999999999999999999999999864
No 64
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.52 E-value=5.9e-07 Score=67.07 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=58.5
Q ss_pred CCcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 38 PKSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
.++|||.||+. .+-+ +.|+.+|++||+ +..+.. +-|-++|.|.+.++
T Consensus 22 ~~~l~V~nLp~~~~t~-----~~L~~~F~~~G~-------------------------v~~v~i--~~g~afV~f~~~~~ 69 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSK-----EDLFRIFSPYGH-------------------------IMQINI--KNAFGFIQFDNPQS 69 (97)
T ss_dssp TCEEEEESCCSSCCCH-----HHHHHHHGGGSC-------------------------EEEEEE--CSSEEEEEESSHHH
T ss_pred CCEEEEeCCCcccCCH-----HHHHHHHHhcCC-------------------------EEEEEE--eCCEEEEEECCHHH
Confidence 46999999997 6544 356778886655 444444 25779999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+|...|++..+.|+.++|.|++.
T Consensus 70 A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 70 VRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHHHHHHTTSEETTEECEEEECCC
T ss_pred HHHHHHHcCCCEECCEEEEEEecCC
Confidence 9999999999999999999999876
No 65
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=3.2e-07 Score=72.78 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=59.9
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
++|||.||+..+-+ +.|+.+|++||+ +..+..++..+.++|.|.+.++|.
T Consensus 32 ~~LfVgNLp~~vte-----~dL~~lF~~fG~-------------------------V~~v~i~~~kG~AFVeF~~~e~A~ 81 (119)
T 2ad9_A 32 RVIHIRKLPIDVTE-----GEVISLGLPFGK-------------------------VTNLLMLKGKNQAFIEMNTEEAAN 81 (119)
T ss_dssp SEEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------CCEEEEEGGGTEEEEECSCHHHHH
T ss_pred CEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEeCCCCEEEEEECCHHHHH
Confidence 58999999987544 356688886655 556666677788999999999999
Q ss_pred HHHHHhcC--CccCCcceEEEEeCC
Q psy258 119 KARINLHQ--SVFASSKINVYFVQP 141 (238)
Q Consensus 119 ~Ar~~L~~--~~f~g~~lrIyFAq~ 141 (238)
+|...+++ ..+.|+.|+|.||+.
T Consensus 82 ~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 82 TMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp HHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred HHHHHhccCCceECCeEEEEEEccC
Confidence 99999875 579999999999987
No 66
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1.6e-07 Score=73.12 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=60.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.||+..+-+ +.|+.+|++| |.+..+..++..|-++|.|.+.++|
T Consensus 16 ~~~LfV~nLp~~vte-----~dL~~lF~~f-------------------------G~V~~v~i~~~kGfaFVeF~~~~~A 65 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTE-----GEVISLGLPF-------------------------GKVTNLLMLKGKNQAFIEMNTEEAA 65 (105)
T ss_dssp CCEEEECSCCTTSCH-----HHHHHHHHHH-------------------------CCEEEEEEETTTTEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEEcCCCEEEEEECCHHHH
Confidence 369999999987644 3456788855 5566677777788999999999999
Q ss_pred HHHHHHhcC--CccCCcceEEEEeCC
Q psy258 118 AKARINLHQ--SVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~--~~f~g~~lrIyFAq~ 141 (238)
..|...+++ ..+.|++|+|.||+.
T Consensus 66 ~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 66 NTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp HHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred HHHHHHhccCCceECCEEEEEEEcCC
Confidence 999998874 679999999999987
No 67
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.52 E-value=4.4e-07 Score=68.64 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..+|||.||+..+-+ +.|+.+|++| |++..+...+. +-++|.|.+.++|
T Consensus 15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~-------------------------G~i~~~~i~~~-g~afV~f~~~~~a 63 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSW-----QDLKDHMREA-------------------------GDVCYADVYRD-GTGVVEFVRKEDM 63 (108)
T ss_dssp CCEEEEESCCSSCCH-----HHHHHHHGGG-------------------------SCEEEEEEETT-TEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEeEEEEecC-CEEEEEECCHHHH
Confidence 469999999987644 3566788855 55556655555 8999999999999
Q ss_pred HHHHHHhcCCccCC-----cceEEEEeCCCC
Q psy258 118 AKARINLHQSVFAS-----SKINVYFVQPMT 143 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g-----~~lrIyFAq~~t 143 (238)
..|...|++..|.| ..|+|.++++..
T Consensus 64 ~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 64 TYAVRKLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp HHHHHHSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred HHHHHHHCcCCccCCcCcceEEEEEeCCCCC
Confidence 99999999999998 899999998733
No 68
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.52 E-value=4.1e-07 Score=69.45 Aligned_cols=73 Identities=23% Similarity=0.244 Sum_probs=62.7
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
...|||.||+..+=+ +.|+.||.|| |++.++....+-|-++|-|.+.++|
T Consensus 7 ~~wL~VgNL~~~~te-----~~L~~lF~q~-------------------------G~V~~~~l~~~kGfaFVey~~~~eA 56 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDG-----PTLRTLCMQH-------------------------GPLVSFHPYLNQGIALCKYTTREEA 56 (89)
T ss_dssp CCEEEEECCCTTCCC-----HHHHHHHHHH-------------------------SCEEEEEEETTTTEEEEEESSHHHH
T ss_pred cceEEEeCCCccCCH-----HHHHHHHHhh-------------------------CCEEEEEEcCCCcEEEEEECCHHHH
Confidence 468999999988766 4566788855 5566677677899999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeC
Q psy258 118 AKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
..|...|++..+.|+.|++.||.
T Consensus 57 ~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 57 NKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHHHHTTEEETTEEEEEECCC
T ss_pred HHHHHHhcCCEECCcEEEEEECC
Confidence 99999999999999999999984
No 69
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=3.1e-07 Score=68.22 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=58.7
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~ 112 (238)
+||||.||+..+-+ +.|+.+|++||+| ..+...+. .|-++|.|.
T Consensus 9 ~~l~V~nlp~~~~~-----~~l~~~f~~~G~i-------------------------~~~~i~~~~~~g~~~g~afV~f~ 58 (104)
T 1p1t_A 9 RSVFVGNIPYEATE-----EQLKDIFSEVGPV-------------------------VSFRLVYDRETGKPKGYGFCEYQ 58 (104)
T ss_dssp SCEEEESCCTTSCH-----HHHHHHHHTTSCC-------------------------SEEEEEEETTTTEEEEEEEEECS
T ss_pred cEEEEeCCCCcCCH-----HHHHHHHHhcCCe-------------------------eEEEEEeCCCCCccceEEEEEEC
Confidence 69999999976543 4577888866554 44444322 467999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..|.|+.++|.|+.+
T Consensus 59 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 59 DQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp CHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred CHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 99999999999999999999999999987
No 70
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.51 E-value=7.8e-07 Score=68.58 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=60.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~ 112 (238)
.++|||.||+..+-+ +.|+.+|++||+ +..+...+ +.|-++|.|.
T Consensus 35 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------v~~v~i~~~~~g~~~g~afV~f~ 84 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSD-----ADIQELFAEFGT-------------------------LKKAAVDYDRSGRSLGTADVHFE 84 (124)
T ss_dssp CEEEEEESCCSSCCH-----HHHHHHHHTTSC-------------------------CSEEEEECCSSSSCCSEEEEEES
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEECCCCCEeeEEEEEEC
Confidence 359999999986544 356788886655 44444443 5678999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..+.|+.|+|.||..
T Consensus 85 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 85 RRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 99999999999999999999999999987
No 71
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.51 E-value=4.7e-07 Score=67.05 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=59.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~ 113 (238)
.++|||.||+..+-+ +.|+.+|++||++..-. ....+.+.+..= ++.|-++|.|.+
T Consensus 13 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i~~~~---------------~~~~~~v~i~~~~~~g~~~G~afV~f~~ 72 (99)
T 2la6_A 13 NNTIFVQGLGENVTI-----ESVADYFKQIGIIKTNK---------------KTGQPMINLYTDRETGKLKGEATVSFDD 72 (99)
T ss_dssp CSEEEEECCCSSCCH-----HHHHHHHTTTSCBCEET---------------TTTEESEEEEECTTTCSEEEEEEEEBSS
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHHhCCEeecc---------------ccccccEEEEecCCCCCeeeEEEEEECC
Confidence 469999999987544 45778899777654000 000001223322 224579999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
.++|.+|...|++..|.|+.++|.||+
T Consensus 73 ~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 73 PPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 999999999999999999999999975
No 72
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=4.2e-07 Score=67.85 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=58.5
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
.||||.||+..+-+ +.|+.+|++||+ +..+...+ +.|-++|.|.
T Consensus 24 ~~l~V~nlp~~~t~-----~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f~ 73 (106)
T 1p27_B 24 WILFVTGVHEEATE-----EDIHDKFAEYGE-------------------------IKNIHLNLDRRTGYLKGYTLVEYE 73 (106)
T ss_dssp EEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTSSEEEEEEEEES
T ss_pred CEEEEeCCCCCCCH-----HHHHHHHhccCC-------------------------eEEEEEEecCCCCceeeEEEEEEC
Confidence 48999999986544 356788886655 44444432 2466999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..|.|..++|.||++
T Consensus 74 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 74 TYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp CHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 99999999999999999999999999976
No 73
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=8.4e-07 Score=66.07 Aligned_cols=76 Identities=14% Similarity=0.031 Sum_probs=60.4
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEE
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRV 109 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiV 109 (238)
+-..+|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|
T Consensus 13 ~~~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV 62 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSE-----PLLWELFLQAGP-------------------------VVNTHMPKDRVTGQHQGYGFV 62 (105)
T ss_dssp CTTTEEEEECCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEECCBCSSSCSBCSCEEE
T ss_pred CCCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCcCCcEEEE
Confidence 33579999999986543 346788885654 54554444 3357999
Q ss_pred EeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 110 NYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.|.+.++|.+|...|++..|.|+.|+|.|+++
T Consensus 63 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 63 EFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp EESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred EECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 99999999999999999999999999999987
No 74
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.51 E-value=8.1e-07 Score=70.64 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=61.7
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-CCeEEEEeCCHH
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-FRRMRVNYESSA 115 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-F~RiiVVF~~~e 115 (238)
-..+|||.||+..+-+ + .|+.+|++| |.+..+...+. -|-++|.|.+.+
T Consensus 72 ~~~~l~V~nl~~~~t~-~----~l~~~F~~~-------------------------G~i~~v~i~~~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNK-T----ELERAFGYY-------------------------GPLRSVWVARNPPGFAFVEFEDPR 121 (150)
T ss_dssp TSCEEEEESCCSCCSC-H----HHHHHHHHH-------------------------SCEEEEEECSSSCSEEEEEESSHH
T ss_pred CCCEEEEeCCCCCCCH-H----HHHHHHHhh-------------------------CCEEEEEEeeCCCcEEEEEECCHH
Confidence 3469999999988755 3 456788855 55556655554 688999999999
Q ss_pred HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 116 AAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+|..|...|++..+.|+.|+|.|+++
T Consensus 122 ~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 122 DAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred HHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 99999999999999999999999876
No 75
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=5.2e-07 Score=68.62 Aligned_cols=75 Identities=29% Similarity=0.360 Sum_probs=60.6
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeC
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYE 112 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~ 112 (238)
-..+|||.||+..+-+ +.|+.+|++||+|. .+... ++.|-++|.|.
T Consensus 28 ~~~~l~V~nLp~~~te-----~~l~~~F~~~G~i~-------------------------~v~i~~~~~~~kg~afV~f~ 77 (109)
T 2err_A 28 QPKRLHVSNIPFRFRD-----PDLRQMFGQFGKIL-------------------------DVEIIFNERGSKGFGFVTFE 77 (109)
T ss_dssp CCCEEEEESCCTTCCH-----HHHHHHGGGTCCCS-------------------------CEEECCBTTBCTTEEEEECC
T ss_pred CCCEEEEECCCCcCCH-----HHHHHHHHhcCCEE-------------------------EEEEEECCCCCceEEEEEEC
Confidence 3569999999986544 45678899777654 33333 24578999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..|.|+.++|.|+++
T Consensus 78 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 78 NSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 99999999999999999999999999986
No 76
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=1.5e-07 Score=69.86 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=59.2
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
-.++|||.||+..+-+ +.|+.+|++||+|. ++.-..-++.+-++|.|.+.++
T Consensus 14 ~~~~l~V~nLp~~~t~-----~~l~~~F~~~g~v~-----------------------~~~~~~g~~~g~afV~f~~~~~ 65 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATE-----ETLQEVFEKATFIK-----------------------VPQNQNGKSKGYAFIEFASFED 65 (101)
T ss_dssp CCSEEEEESCCTTCCH-----HHHHHHCSSCSEEE-----------------------CCBCSSSCBCSEEEEECSSHHH
T ss_pred CCCEEEEeCCCCCCCH-----HHHHHHHHhCCEEE-----------------------EEECCCCCEeeEEEEEECCHHH
Confidence 3579999999987544 35678888776542 0000112345789999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+|...|++..|.|+.|+|.|+++
T Consensus 66 A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 66 AKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp HHHHHHHTSSEEETTEEEEEEECSS
T ss_pred HHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 9999999999999999999999987
No 77
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.51 E-value=1.3e-07 Score=72.13 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=60.7
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---------CCCeEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---------SFRRMR 108 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---------SF~Rii 108 (238)
.++|||.||+..+-+ ++|+. ++.+|++||+ +..+...+ +.+-++
T Consensus 15 ~~~l~V~nLp~~~~~-~~l~~-~~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~~~~G~af 67 (111)
T 2cpi_A 15 KNLVFVVGLSQRLAD-PEVLK-RPEYFGKFGK-------------------------IHKVVINNSTSYAGSQGPSASAY 67 (111)
T ss_dssp SSCEEEEEECTTTCC-HHHHH-STTTTTTTSC-------------------------EEEEEEECCSSCCSSSCCCEEEE
T ss_pred CCEEEEECCCCCCCH-HHHHH-HHHHhhccCC-------------------------EEEEEEecCCCcCccCCCCeEEE
Confidence 369999999987766 44431 3478886655 54544443 235899
Q ss_pred EEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 109 VNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 109 VVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.|.+.++|.+|...|++..|.|+.|+|.||++
T Consensus 68 V~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 68 VTYIRSEDALRAIQCVNNVVVDGRTLKASLGTT 100 (111)
T ss_dssp EEESSHHHHHHHHHHHTTEEETTEEEEEESCCC
T ss_pred EEECcHHHHHHHHHHhCCCEECCEEEEEEeccc
Confidence 999999999999999999999999999999987
No 78
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.50 E-value=7.9e-07 Score=67.42 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=59.9
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCC
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYES 113 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~ 113 (238)
..+||||.||+..+-. +.|+.+|++||. +..+... ++.|-++|.|.+
T Consensus 7 ~~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------v~~v~i~~~~~~~g~afV~f~~ 56 (115)
T 3lqv_A 7 VNRILYIRNLPYKITA-----EEMYDIFGKYGP-------------------------IRQIRVGNTPETRGTAYVVYED 56 (115)
T ss_dssp CCSEEEEESCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEECSTTTTTCEEEEESS
T ss_pred CCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEeeCCCCCcEEEEEECC
Confidence 3469999999976544 346788886655 4444443 345689999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.++|.+|...|++..+.|..++|.|+++
T Consensus 57 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 57 IFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp HHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 9999999999999999999999999876
No 79
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.50 E-value=1.3e-07 Score=69.54 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=60.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..+|||.||+..+-+ +.|+.+|++||++. .+ ...-++.|-++|.|.+.++|
T Consensus 16 ~~~l~V~nL~~~~t~-----~~l~~~F~~~g~v~-----------------------~~-~~~~~~~g~afV~f~~~~~a 66 (96)
T 1fjc_A 16 ARTLLAKNLSFNITE-----DELKEVFEDALEIR-----------------------LV-SQDGKSKGIAYIEFKSEADA 66 (96)
T ss_dssp GGEEEEESCCSSCCH-----HHHHHHHCSEEEEC-----------------------CE-EETTEEEEEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHhhCCcEE-----------------------Ee-CCCCCcceEEEEEECCHHHH
Confidence 469999999987644 35678899777654 11 22223456799999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
..|...|++..+.|..|+|.|+.+.
T Consensus 67 ~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 67 EKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp HHHHHHTTEEEETTEEEEEEECSSS
T ss_pred HHHHHHhCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999999773
No 80
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=1.2e-06 Score=64.61 Aligned_cols=74 Identities=11% Similarity=0.177 Sum_probs=59.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
.++|||.||+..+-+ +.|+.+|++| |.+..+...+ +.+-++|.|
T Consensus 10 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f 59 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGE-----TELREYFKKF-------------------------GVVTEVVMIYDAEKQRPRGFGFITF 59 (99)
T ss_dssp CCEEEEESCCSSCCH-----HHHHHHHSSS-------------------------SCEEEEEECCCTTTCSCCSEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEeCCCCCCCCceEEEEE
Confidence 469999999986544 3467788855 5555555554 346799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+.++|.+|.. +++..|.|+.|+|.|+++.
T Consensus 60 ~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 60 EDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp SSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred CCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 99999999998 9999999999999999873
No 81
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.50 E-value=3.6e-07 Score=67.82 Aligned_cols=79 Identities=19% Similarity=0.127 Sum_probs=62.0
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
-+.+|||.||+..+-+ +.|+.+|++||.+. . --+..-..-++.+-++|.|.+.++
T Consensus 16 ~~~~l~V~nLp~~~t~-----~~l~~~F~~~G~v~-------------------~-~~~~~~~~g~~~g~afV~f~~~~~ 70 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSV-----AELKVAISELFAKN-------------------D-LAVVDVRTGTNRKFGYVDFESAED 70 (101)
T ss_dssp CSEEEEEECCCTTSCH-----HHHHHHHHHHHHHH-------------------T-CCCCEEEEETTTTEEEEEESSHHH
T ss_pred CCCEEEEeCCCCCCCH-----HHHHHHHHHhCCcc-------------------e-EEEecCCCCCcCcEEEEEECCHHH
Confidence 3569999999986544 45778899887654 1 122333344667789999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+|.. |++..+.|+.|+|.++++
T Consensus 71 a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 71 LEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp HHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred HHHHHh-cCCcEECCcEEEEEEcCC
Confidence 999998 999999999999999987
No 82
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.50 E-value=1.2e-07 Score=69.46 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=58.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~ 113 (238)
+++|||.||+..+-+ +.|+.+|++||++. .+ .+..- ++.+-++|.|.+
T Consensus 15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~i~----------------------~~-~~~~~~~~g~~~g~afV~f~~ 66 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSI-----DEILDFFYGYQVIP----------------------GS-VCLKYNEKGMPTGEAMVAFES 66 (95)
T ss_dssp CEEEEEECCCTTCCH-----HHHHHHTTTSCBCT----------------------TC-CEEEECTTSCEEEEEEEEESS
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCCcc----------------------ce-EEEEeCCCCCEeeEEEEEECC
Confidence 579999999976544 45778899888765 11 11111 223569999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.++|.+|...|++..|.|+.++|.++.+
T Consensus 67 ~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 67 RDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred HHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 9999999999999999999999998764
No 83
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.49 E-value=3.9e-07 Score=70.18 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=59.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF 111 (238)
+.+|||.||+..+-+ +.|+.+|++||+ +.++... ++.|-++|.|
T Consensus 6 ~~~lfV~nL~~~~te-----~~L~~~F~~~G~-------------------------i~~v~i~~d~~tg~~rG~aFV~f 55 (110)
T 3s8s_A 6 LKEVTFARLNDNVRE-----TFLKDMCRKYGE-------------------------VEEVEILLHPRTRKHLGLARVLF 55 (110)
T ss_dssp CCEEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred CcEEEEECCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEECCCCCceeeEEEEEE
Confidence 469999999986644 356678886655 4444433 3445699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..+.|+.|+|.++..
T Consensus 56 ~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 56 TSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 999999999999999999999999999865
No 84
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=8.1e-07 Score=66.65 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=60.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++| |.+..+... ++.+-++|.|
T Consensus 15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~g~~~g~afV~f 64 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEE-----EALGEVLQQF-------------------------GDLKYVRVVLHPDTEHSKGCAFAQF 64 (111)
T ss_dssp CCCEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCBCSSSCCBCSEEEEEE
T ss_pred CCEEEEECCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEecCCCCCCccEEEEEE
Confidence 469999999986544 3567788855 555555554 3456799999
Q ss_pred CCHHHHHHHHHHhc------CCccCCcceEEEEeCCC
Q psy258 112 ESSAAAAKARINLH------QSVFASSKINVYFVQPM 142 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~------~~~f~g~~lrIyFAq~~ 142 (238)
.+.++|.+|+..++ +..+.|+.|+|.|+.+.
T Consensus 65 ~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 65 MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR 101 (111)
T ss_dssp SSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred CCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCC
Confidence 99999999999999 88999999999999873
No 85
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=5.2e-07 Score=66.77 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 38 PKSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
.++|||.||+. .+-+ +.|+.+|++||+|. .+... -+-++|.|.+.++
T Consensus 10 ~~~l~V~nlp~~~~t~-----~~l~~~F~~~G~v~-------------------------~v~i~--~g~afV~f~~~~~ 57 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSK-----EDLFRIFSPYGHIM-------------------------QINIK--NAFGFIQFDNPQS 57 (96)
T ss_dssp CEEEEEESSTTSCCCH-----HHHHHHHTTTCCCC-------------------------EEEEE--TTEEEEEESCHHH
T ss_pred CCEEEEeCCCcccCCH-----HHHHHHHHhcCCEE-------------------------EEEEe--CCEEEEEECCHHH
Confidence 46999999997 5544 45678888776654 33332 5779999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|..|...|++..+.|+.++|.|++.
T Consensus 58 A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 58 VRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp HHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred HHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 9999999999999999999999976
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.49 E-value=6.6e-07 Score=67.33 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=59.2
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~ 112 (238)
.||||.||+..+-+ +.|+.+|++| |.+..+...+. .|-++|.|.
T Consensus 27 ~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f~ 76 (110)
T 1oo0_B 27 WILFVTSIHEEAQE-----DEIQEKFCDY-------------------------GEIKNIHLNLDRRTGFSKGYALVEYE 76 (110)
T ss_dssp EEEEEESCCTTCCH-----HHHHHHHGGG-------------------------SCEEEEECCBCTTTSSBCSEEEEEES
T ss_pred CEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEEecCCCCCcceEEEEEEC
Confidence 48999999986544 3467888855 55555555433 467999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|..|...|++..+.|..++|.|+++
T Consensus 77 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 77 THKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 99999999999999999999999999976
No 87
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.49 E-value=9.6e-07 Score=65.88 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=59.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+..++ +.+-++|.|
T Consensus 13 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~f 62 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDE-----KDLKPLFEEFGK-------------------------IYELTVLKDRFTGMHKGCAFLTY 62 (106)
T ss_dssp CEEEEEESCCTTCCH-----HHHHHHHHHHSC-------------------------CCEEECCCCSSSCSCCSEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEecCCCCCcceEEEEEE
Confidence 469999999976544 356788886655 44444444 456799999
Q ss_pred CCHHHHHHHHHHhcCCcc---CCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVF---ASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f---~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..+ .+..|+|.|++.
T Consensus 63 ~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 63 CERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp SSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred CCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 999999999999999876 789999999987
No 88
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=5.3e-07 Score=66.85 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=59.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
.++|||.||+..+-+ +.|+.+|++||+|. .+...+ +.+-++|.|
T Consensus 12 ~~~l~V~nLp~~~t~-----~~l~~~f~~~G~i~-------------------------~v~i~~~~~~~~~~g~afV~f 61 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDD-----KVLHAAFIPFGDIT-------------------------DIQIPLDYETEKHRGFAFVEF 61 (102)
T ss_dssp CSCEEEESCCSSCCH-----HHHHHHHTTTSCCC-------------------------CEECCCCSSSCCCSSEEEECC
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHhhccCCEE-------------------------EEEEEecCCCCCcceEEEEEE
Confidence 469999999986543 45778888666643 343333 456799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..|.|+.|+|.|+++
T Consensus 62 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 62 ELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 999999999999999999999999999987
No 89
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=5.6e-07 Score=66.36 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=59.9
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCce-EEEecCC------CCeEE
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPK-SFQYLKS------FRRMR 108 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv-~fv~LkS------F~Rii 108 (238)
.-+.+|||.||+..+-+ +.|+.+|++| |.+. .+...+. .+-++
T Consensus 7 ~~~~~l~V~nLp~~~t~-----~~l~~~F~~~-------------------------G~i~~~v~i~~~~~~g~~~g~af 56 (99)
T 2div_A 7 GMAASLWMGDLEPYMDE-----NFISRAFATM-------------------------GETVMSVKIIRNRLTGIPAGYCF 56 (99)
T ss_dssp SSSSEEEECSCCTTCCH-----HHHHHHHHHT-------------------------TCCCCEEEEEECSSSCCEEEEEE
T ss_pred CCccEEEEeCCCCCCCH-----HHHHHHHHHh-------------------------CCcceEEEEeecCCCCCcCCEEE
Confidence 44679999999986544 4566778855 5555 5544433 25699
Q ss_pred EEeCCHHHHHHHHHHhcCCccCCcc----eEEEEeCC
Q psy258 109 VNYESSAAAAKARINLHQSVFASSK----INVYFVQP 141 (238)
Q Consensus 109 VVF~~~eaA~~Ar~~L~~~~f~g~~----lrIyFAq~ 141 (238)
|.|.+.++|.+|...|++..+.|.. ++|.||+.
T Consensus 57 V~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 57 VEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 93 (99)
T ss_dssp EECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred EEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence 9999999999999999999999988 99999987
No 90
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.46 E-value=5.9e-07 Score=68.93 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=58.2
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEeCCH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNYESS 114 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF~~~ 114 (238)
++|||.||+..+-+ +.|+.+|++||+ +.++...+ +.|-++|.|.+.
T Consensus 6 ~~lfV~nLp~~~te-----~~L~~~F~~~G~-------------------------v~~v~i~~d~~~~kg~afV~f~~~ 55 (115)
T 4f25_A 6 GNIFIKNLDKSIDN-----KALYDTFSAFGN-------------------------ILSCKVVCDENGSKGYGFVHFETQ 55 (115)
T ss_dssp CEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEEETTEEEEEEEEEESCH
T ss_pred CEEEECCCCCCCCH-----HHHHHHHhccCC-------------------------EEEEEEeecCCCCCceEEEEECCH
Confidence 58999999986543 457788886655 44443332 234699999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|.+|...|++..+.|+.|+|.++++
T Consensus 56 ~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 56 EAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999999999999999999999876
No 91
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.46 E-value=7.5e-07 Score=68.57 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=59.7
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~ 112 (238)
.||||.||+..+-+ +.|+.+|++| |.+..+...+. .+-++|.|.
T Consensus 23 ~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f~ 72 (126)
T 3ex7_B 23 WILFVTGVHEEATE-----EDIHDKFAEY-------------------------GEIKNIHLNLDRRTGYLKGYTLVEYE 72 (126)
T ss_dssp EEEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCBCTTTSSBCSCEEEEES
T ss_pred CEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEecCCCCccceEEEEEEC
Confidence 49999999976533 3566778855 55555554433 568999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
+.++|..|...|++..|.|..|+|.|+++..
T Consensus 73 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 73 TYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 103 (126)
T ss_dssp SHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred CHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Confidence 9999999999999999999999999997733
No 92
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.46 E-value=6.2e-07 Score=67.00 Aligned_cols=72 Identities=26% Similarity=0.419 Sum_probs=59.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.||+..+=+ +.|+.+|++| |.+..+...+. -++|.|.+.++|
T Consensus 11 ~~~l~V~nl~~~~t~-----~~l~~~F~~~-------------------------G~i~~v~~~~~--~afV~f~~~~~a 58 (103)
T 2dgu_A 11 VKVLFVRNLANTVTE-----EILEKAFSQF-------------------------GKLERVKKLKD--YAFIHFDERDGA 58 (103)
T ss_dssp CCCEEEECCCTTCCH-----HHHHHHHHHH-------------------------SCEEEEEECSS--CEEEEESSHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEECC--EEEEEeCCHHHH
Confidence 369999999986533 4566788855 55556665554 699999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+|...|++..|.|+.|+|.|+++
T Consensus 59 ~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 59 VKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp HHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHCCCccCCCEEEEEEcCC
Confidence 999999999999999999999987
No 93
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.46 E-value=4.3e-07 Score=68.09 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=61.2
Q ss_pred CCCCcEEEecCCC--CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeE
Q psy258 36 QLPKSLIITNLNP--DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRM 107 (238)
Q Consensus 36 ~~p~TLiitnL~~--~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~Ri 107 (238)
.+.+||+|.|||. .... +...+.|+.+|++||+ +.++... ++.|-+
T Consensus 4 ~~~~~vfV~nLp~v~~~~~-~~~~~~L~~~F~~~G~-------------------------i~~v~i~~d~~tg~~kG~a 57 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKV-PVLKKALTSLFSKAGK-------------------------VVNMEFPIDEATGKTKGFL 57 (100)
T ss_dssp CGGGEEEEESCCCCBGGGH-HHHHHHHHHHHHTTSC-------------------------EEEEECCEETTTTEECSEE
T ss_pred CcCcEEEEeCCCcCChHHH-HHHHHHHHHHHHhcCC-------------------------EeEEEEEEcCCCCccceEE
Confidence 4567999999984 1111 3456678888886654 4444433 345779
Q ss_pred EEEeCCHHHHHHHHHHhcCCccCC-cceEEEEeCC
Q psy258 108 RVNYESSAAAAKARINLHQSVFAS-SKINVYFVQP 141 (238)
Q Consensus 108 iVVF~~~eaA~~Ar~~L~~~~f~g-~~lrIyFAq~ 141 (238)
+|.|.+.++|.+|...|++..|.| +.|+|.++++
T Consensus 58 fV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 58 FVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp EEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred EEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 999999999999999999999999 9999999865
No 94
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.46 E-value=6.6e-07 Score=68.01 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=58.8
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||+| ..+...+. .+-++|.|
T Consensus 25 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i-------------------------~~v~i~~~~~~g~~~g~afV~f 74 (115)
T 2cpz_A 25 GANLFIYHLPQEFGD-----QDLLQMFMPFGNV-------------------------VSAKVFIDKQTNLSKCFGFVSY 74 (115)
T ss_dssp TCCEEEESCCSSCCH-----HHHHHHHGGGSCC-------------------------SEEEEEECSSSCSEEEEEEEEC
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHhcCCe-------------------------EEEEEEECCCCCCcCccEEEEE
Confidence 369999999986544 4567888866554 44433332 24599999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..|.|..|+|.|+++
T Consensus 75 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 75 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 999999999999999999999999999987
No 95
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.46 E-value=3.8e-07 Score=64.01 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=53.4
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeCC
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYES 113 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~~ 113 (238)
+|+|.|||..+-+ +.|+.+|++||++. .+... ++.|-++|.|.+
T Consensus 1 ~l~v~nlp~~~t~-----~~l~~~F~~~G~i~-------------------------~v~i~~~~~~~~~~g~afV~f~~ 50 (75)
T 2mss_A 1 KIFVGGLSVNTTV-----EDVKHYFEQFGKVD-------------------------DAMLMFDKTTNRHRGFGFVTFES 50 (75)
T ss_dssp CEEEECCCSSCCH-----HHHHHHHHTTSCCS-------------------------EECCCBCSSSTTSCBEEEEECSC
T ss_pred CEEEecCCCCCCH-----HHHHHHHHhcCCEE-------------------------EEEEEecCCCCCcCcEEEEEECC
Confidence 5899999986544 35677888776653 33322 234679999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
.++|.+|.. +++..+.|+.++|.+|
T Consensus 51 ~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 51 EDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 999999987 9999999999999875
No 96
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.45 E-value=5.6e-07 Score=76.13 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=60.8
Q ss_pred CcEEEecCC-CCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-CCeEEEEeCCHHH
Q psy258 39 KSLIITNLN-PDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-FRRMRVNYESSAA 116 (238)
Q Consensus 39 ~TLiitnL~-~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-F~RiiVVF~~~ea 116 (238)
+||||.||+ ..+-. +.|+.+|++| |.+.++..++. .|-++|.|.+.++
T Consensus 5 ~~l~V~nL~~~~~~~-----~~L~~~F~~~-------------------------G~v~~v~i~~~~~g~afV~f~~~~~ 54 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNC-----DRVFNVFCLY-------------------------GNVEKVKFMKSKPGAAMVEMADGYA 54 (205)
T ss_dssp SEEEEECCCTTTCCH-----HHHHHHHTTT-------------------------SCEEEEEECTTSTTCEEEEESSHHH
T ss_pred CEEEEeCCCcccCCH-----HHHHHHHHhc-------------------------CCeEEEEEecCCCCEEEEEECCHHH
Confidence 599999999 55544 3577888855 55666766663 5789999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|..|...|++..+.|+.|+|.|++.
T Consensus 55 A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 55 VDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp HHHHHHHHTTCEETTEECEEEECSC
T ss_pred HHHHHHHhCCCEECCceEEEEEccC
Confidence 9999999999999999999999975
No 97
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.44 E-value=3.2e-07 Score=69.89 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=57.8
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++|| .+..+...+ +.+-++|.|
T Consensus 40 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G-------------------------~i~~~~i~~~~~~g~~~g~afV~f 89 (118)
T 2khc_A 40 GCNLFIYHLPQEFTD-----TDLASTFLPFG-------------------------NVISAKVFIDKQTSLSKCFGFVSF 89 (118)
T ss_dssp SEEEEEECSCTTCCH-----HHHHHHTTTSC-------------------------EEEEEEECCCSSSSCCCCEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CEEEEEEEeCCCCCCcCcEEEEEE
Confidence 359999999987543 45677888554 455555543 356799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
.+.++|.+|...|++..|.|+.|+|.|++
T Consensus 90 ~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 90 DNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp ESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 99999999999999999999999999975
No 98
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=2.2e-06 Score=65.19 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=58.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..||||.||+..+-+ +.|+.+|++| |.+..+..++. .+-++|.|
T Consensus 17 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f 66 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTD-----ASLRKYFEGF-------------------------GDIEEAVVITDRQTGKSRGYGFVTM 66 (116)
T ss_dssp SSEEEEECCCSSCCH-----HHHHHHHHTT-------------------------SCEEEEEESCCSSSCCCCSEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhC-------------------------CCeeEEEEEEcCCCCccceEEEEEE
Confidence 469999999986544 3466788855 55555555543 45799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...+++ .|.|+.|+|.|++.
T Consensus 67 ~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 67 ADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp SSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred CCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 999999999999998 79999999999976
No 99
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.43 E-value=9.1e-07 Score=67.93 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=59.4
Q ss_pred CcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-------CCCCeEEEE
Q psy258 39 KSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-------KSFRRMRVN 110 (238)
Q Consensus 39 ~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-------kSF~RiiVV 110 (238)
.+|++.|+-. .-+. +++.+.|+.+|++||+ +.++... ++.|.++|.
T Consensus 9 ~~l~l~Nm~~~~~l~-dd~~~dl~~~f~~~G~-------------------------V~~v~i~~~~~~~~~~~G~~FV~ 62 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVD-EDLEVETKEECEKYGK-------------------------VGKCVIFEIPGAPDDEAVRIFLE 62 (105)
T ss_dssp SEEEEESSSCSCCC----CHHHHHHHGGGGSC-------------------------EEEEEEEECSSCCTTTSEEEEEE
T ss_pred CEEEEEcCCChHHhh-HHHHHHHHHHHHhcCC-------------------------EEEEEEecCCCCCCCCcEEEEEE
Confidence 5999999973 2233 4567788888886655 4444333 356899999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+.++|.+|...|+|..|.|+.+++.|+..
T Consensus 63 f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 63 FERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred ECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 9999999999999999999999999999865
No 100
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.43 E-value=7.1e-07 Score=68.13 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=60.0
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHH
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSA 115 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~e 115 (238)
.-.++|||.||+..+-+ +.|+.+|++||+|. .+... -|-++|.|.+.+
T Consensus 29 ~~~~~l~V~nLp~~~t~-----~~L~~~F~~~G~i~-------------------------~v~i~--kg~afV~f~~~~ 76 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQE-----SELNEIFGPFGPMK-------------------------EVKIL--NGFAFVEFEEAE 76 (108)
T ss_dssp CSCSEEEECSSCTTCCH-----HHHHHHHTTTSCCC-------------------------EEEEE--TTEEEEECSSHH
T ss_pred CCCCEEEEECCCCCCCH-----HHHHHHHHhcCCEE-------------------------EEEEE--CCEEEEEECCHH
Confidence 33569999999986543 45778888776644 33333 577999999999
Q ss_pred HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 116 AAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+|.+|...|++..|.|+.++|.|++.
T Consensus 77 ~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 77 SAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp HHHHHHHHHTTCEETTEECEEESCSC
T ss_pred HHHHHHHHcCCCEECCeEEEEEEecC
Confidence 99999999999999999999999987
No 101
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.43 E-value=7.1e-07 Score=64.28 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=57.5
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
.||||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|.
T Consensus 7 ~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f~ 56 (89)
T 3ucg_A 7 RSIYVGNVDYGATA-----EELEAHFHGCGS-------------------------VNRVTILCDKFSGHPKGFAYIEFS 56 (89)
T ss_dssp TEEEEESCCTTCCH-----HHHHHHHGGGCC-------------------------EEEEEEEESCSSSSCCEEEEEEES
T ss_pred CEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------EEEEEEEecCCCCCcceEEEEEEC
Confidence 69999999986633 456788886655 44444332 3457999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|. .+++..|.|+.++|.++++
T Consensus 57 ~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 57 DKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp STHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 999999999 9999999999999999886
No 102
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.43 E-value=8.9e-07 Score=69.81 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=59.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++|| .+..+... ++.+-++|.|
T Consensus 46 ~~~l~V~nLp~~~te-----~~L~~~F~~~G-------------------------~I~~v~i~~d~~tg~~~G~afV~F 95 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTE-----RDLREVFSKYG-------------------------PIADVSIVYDQQSRRSRGFAFVYF 95 (129)
T ss_dssp SSCBCEETCTTSCCH-----HHHHHHHTTTS-------------------------CEEEEEEECCSSSSCCCCEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CeEEEEEEecCCCCccceEEEEEE
Confidence 459999999987544 35677888554 45555554 3456799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..|.|+.|+|.|+++
T Consensus 96 ~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 96 ENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp SCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 999999999999999999999999999887
No 103
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.43 E-value=1e-06 Score=63.10 Aligned_cols=73 Identities=23% Similarity=0.259 Sum_probs=55.4
Q ss_pred CcEEEecCCCCCCCC-hHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258 39 KSLIITNLNPDLFKD-DALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES 113 (238)
Q Consensus 39 ~TLiitnL~~~vf~~-~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~ 113 (238)
+||||.|||..+-.. +...+.|+.+|++||+ +..+... ++.|-++|.|.+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~-------------------------i~~v~i~~~~g~~~g~afV~f~~ 56 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK-------------------------ITNDFYPEEDGKTKGYIFLEYAS 56 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCC-------------------------EEEEECCCBTTBCCCEEEEEESS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCC-------------------------eEEEEecCCCCcEeEEEEEEECC
Confidence 689999998654321 1156778888886655 4444433 345789999999
Q ss_pred HHHHHHHHHHhcCCccCCc-ceEE
Q psy258 114 SAAAAKARINLHQSVFASS-KINV 136 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~-~lrI 136 (238)
.++|.+|...|++..|.|+ .++|
T Consensus 57 ~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 57 PAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHHhcCcccCCceeEEe
Confidence 9999999999999999998 7765
No 104
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.42 E-value=7.1e-07 Score=69.31 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=57.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|
T Consensus 63 ~~~l~v~nlp~~~~~-----~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f 112 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDD-----KVLHAAFIPFGD-------------------------ITDIQIPLDYETEKHRGFAFVEF 112 (140)
T ss_dssp CCEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEECCCCTTTCCCCSEEEEEE
T ss_pred CcEEEEEeCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEeecCCCCCcCcEEEEEE
Confidence 469999999986544 457788886654 55554443 356799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
.+.++|.+|...|++..|.|+.|+|.||
T Consensus 113 ~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 113 ELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 9999999999999999999999999875
No 105
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=2.5e-06 Score=63.11 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=59.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.||+..+-+ +.|+.+|++||. |.+..+... -+-++|.|.+.++|
T Consensus 15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~g~-----------------------g~v~~~~~~--~g~afV~f~~~~~A 64 (99)
T 2cpd_A 15 VKILYVRNLMLSTSE-----EMIEKEFNNIKP-----------------------GAVERVKKI--RDYAFVHFSNREDA 64 (99)
T ss_dssp CCEEEEESCCTTCCH-----HHHHHHHHTTST-----------------------TCEEEEEEC--SSEEEEEESSHHHH
T ss_pred cCEEEEeCCCCCCCH-----HHHHHHHHhcCC-----------------------cceEEEEEe--CCeEEEEeCCHHHH
Confidence 359999999986443 356788886611 345454443 35799999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+|...|++..|.|..|+|.|+++.
T Consensus 65 ~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 65 VEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp HHHHHHHSSEEETTEEEEEECCCCC
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCC
Confidence 9999999999999999999999873
No 106
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.42 E-value=7e-07 Score=78.77 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=65.3
Q ss_pred CCcEEEecCCCCC----CCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDL----FKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~v----f~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~ 113 (238)
..||||.||+..+ .......+.|+.+|++| |+|..+..+++.|-++|.|.+
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f-------------------------G~I~~v~v~~~kG~AFV~F~~ 188 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL-------------------------GDIDRIRYVESKNCGFVKFKY 188 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT-------------------------SCEEEEEEEGGGTEEEEEESS
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHcc-------------------------CCEEEEEEECCCCEEEEEeCC
Confidence 3599999999765 22234567788888844 667778888888999999999
Q ss_pred HHHHHHHHHHhcCCcc------------CCcceEEEEeCCC
Q psy258 114 SAAAAKARINLHQSVF------------ASSKINVYFVQPM 142 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f------------~g~~lrIyFAq~~ 142 (238)
.++|..|+..|++..+ .|..|+|.||...
T Consensus 189 ~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 189 QANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred HHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 9999999999999988 7889999999873
No 107
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=5.9e-07 Score=66.86 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=59.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+...+. .+-++|.|
T Consensus 15 ~~~l~V~nlp~~~t~-----~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f 64 (103)
T 2cq0_A 15 NATIRVTNLSEDTRE-----TDLQELFRPFGS-------------------------ISRIYLAKDKTTGQSKGFAFISF 64 (103)
T ss_dssp SEEEEEESCCTTCCH-----HHHHTTSTTTCC-------------------------EEEEEEEECSSSCSEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------eEEEEEeecCCCCceeeEEEEEE
Confidence 469999999986544 346677885554 444444432 34699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+.++|.+|...|++..|.|..|+|.|+++.
T Consensus 65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 65 HRREDAARAIAGVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp SSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred CCHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence 9999999999999999999999999999873
No 108
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.41 E-value=8.9e-07 Score=66.89 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=58.9
Q ss_pred CCcEEEecCCCC-CCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 38 PKSLIITNLNPD-LFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~~-vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
..+|||.||+.. +-+ +.|+.+|++||+|. .+.. +.+-++|.|.+.++
T Consensus 27 ~~~l~V~nl~~~~~t~-----~~l~~~F~~~G~v~-------------------------~v~i--~~g~afV~f~~~~~ 74 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKK-----SDVETIFSKYGRVA-------------------------GCSV--HKGYAFVQYSNERH 74 (110)
T ss_dssp SSEEEECSCCCSSCCH-----HHHHHHHGGGSCCS-------------------------EEEE--ETTEEEEECSSSHH
T ss_pred CcEEEEeCCCcccCCH-----HHHHHHHHhCCCeE-------------------------EEEE--eCCEEEEEECCHHH
Confidence 469999999987 433 45678888776654 3333 56789999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+|...|++..|.|..|+|.|++.
T Consensus 75 A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 75 ARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp HHHHHHHHTTCEETTEECCEEESCC
T ss_pred HHHHHHHcCCCEECCeEEEEEECCC
Confidence 9999999999999999999999975
No 109
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.40 E-value=1.4e-06 Score=66.74 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=46.8
Q ss_pred HHHHhhhhcCCceEEEecC--------CCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 84 QIETLLSQFGKPKSFQYLK--------SFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 84 ~~~~~~~~~~~iv~fv~Lk--------SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+++.+++||.+.++...+ +.|.++|.|.+.++|.+|...|+|..|.|+.+++.|+..
T Consensus 31 dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 31 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 3334444666677766553 568999999999999999999999999999999999754
No 110
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=8.2e-07 Score=65.65 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=59.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.|+ .+ -.+.|+.+|++|| .+..+...++-+-++|.|.+.++|
T Consensus 15 ~~~l~V~n~--~~-----t~~~l~~~F~~~G-------------------------~i~~v~i~~~~g~afV~f~~~~~a 62 (97)
T 1x5p_A 15 GNTLYVYGE--DM-----TPTLLRGAFSPFG-------------------------NIIDLSMDPPRNCAFVTYEKMESA 62 (97)
T ss_dssp CSEEEEECS--SC-----CHHHHHHHHTTTS-------------------------CEEEEEEETTTTEEEEEESSHHHH
T ss_pred CCEEEEcCC--CC-----CHHHHHHHHhhCC-------------------------CEEEEEecCCCCEEEEEECCHHHH
Confidence 369999996 22 2356778888554 455555567888999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+|...|++..|.|..|+|.|+++.
T Consensus 63 ~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 63 DQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp HHHHHHTTTEEETTEEEEEECCSSC
T ss_pred HHHHHHhCCCeECCeEEEEEECCCC
Confidence 9999999999999999999999873
No 111
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=1.5e-06 Score=65.66 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~ 113 (238)
..||||.||+..+-+ +.|+.+|++||.|.+=. ..--+.+.+..= ++.+-++|.|.+
T Consensus 15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i~~~~---------------~~~~~~v~i~~~~~~g~~~g~afV~f~~ 74 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTL-----DDLADFFKQCGVVKMNK---------------RTGQPMIHIYLDKETGKPKGDATVSYED 74 (113)
T ss_dssp CCEEEEECCCTTCCH-----HHHHHHHTTTSCBCBCS---------------SSCCBSEECCBCTTTCSBCSEEEEEBSS
T ss_pred CCEEEEcCCCCCCCH-----HHHHHHHHhcCCEeEcc---------------ccCccCEEEEEeCCCCCeeeEEEEEECC
Confidence 469999999976544 45678888776643000 000001122111 234679999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.++|.+|...|++..|.|..|+|.+++..
T Consensus 75 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 75 PPTAKAAVEWFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred HHHHHHHHHHcCCCccCCCEEEEEECCCC
Confidence 99999999999999999999999999873
No 112
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.39 E-value=1e-06 Score=68.89 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=60.6
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEE
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRV 109 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiV 109 (238)
+-..+|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|
T Consensus 40 ~~~~~l~V~nLp~~~~~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV 89 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDE-----VQLRQLFERYGP-------------------------IESVKIVCDRETRQSRGYGFV 89 (139)
T ss_dssp TTTSEEEEESCSTTCCH-----HHHHHHHHHHSC-------------------------EEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEEcCCCCCcceEEEE
Confidence 33469999999987654 356778885554 54444443 2456999
Q ss_pred EeCCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 110 NYESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.|.+.++|.+|...|++..|.|+.|+|.|++..
T Consensus 90 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 90 KFQSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp EESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999999999873
No 113
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=1.7e-06 Score=66.00 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=59.3
Q ss_pred CcEEEecCCC--CCCCC----hHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec--CCCCeEEEE
Q psy258 39 KSLIITNLNP--DLFKD----DALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL--KSFRRMRVN 110 (238)
Q Consensus 39 ~TLiitnL~~--~vf~~----~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L--kSF~RiiVV 110 (238)
.||+|.||-. .+-.+ +.+.+.|+.+|++||+| ..+... .+-|-++|.
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v-------------------------~~v~i~~~~~~G~afV~ 70 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQI-------------------------RKLLLFDRHPDGVASVS 70 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCC-------------------------SEEEEETTCTTCEEEEE
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCE-------------------------eEEEEecCCCCEEEEEE
Confidence 4999999943 11111 12456677777766554 444222 246789999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQPMTP 144 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~ 144 (238)
|.+.++|.+|...|++..|.|+.++|.|+.+.+.
T Consensus 71 f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 71 FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 9999999999999999999999999999987443
No 114
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.3e-06 Score=64.93 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=58.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhh-cCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQ-FGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++ ||+ +..+...+ +.+-++|.|
T Consensus 9 ~~~l~V~nLp~~~t~-----~~l~~~F~~~~G~-------------------------v~~v~i~~~~~g~~~g~afV~f 58 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDD-----GMLYEFFVKVYPS-------------------------CRGGKVVLDQTGVSKGYGFVKF 58 (104)
T ss_dssp CCCEEEECCCTTCCH-----HHHHHHHHHHCTT-------------------------EEEEEEEECTTCCEEEEEEEEE
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHHhCCC-------------------------eEEEEEEECCCCCccceEEEEE
Confidence 469999999986544 356778885 654 44444433 346799999
Q ss_pred CCHHHHHHHHHHhcCCc-cCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSV-FASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~-f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++.. +.|..|+|.|+.+
T Consensus 59 ~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 59 TDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp SCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred CCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 99999999999999999 9999999999876
No 115
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=2.1e-06 Score=64.96 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=57.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~ 112 (238)
+++|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|.
T Consensus 25 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~~~i~~~~~g~~~g~afV~f~ 74 (114)
T 1x5o_A 25 PTNLYISNLPLSMDE-----QELENMLKPFGQ-------------------------VISTRILRDSSGTSRGVGFARME 74 (114)
T ss_dssp TTEEEEESCCTTCCH-----HHHHHTTTTTSC-------------------------EEEEEEEECSSSCEEEEEEEEES
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEEECCCCCcceEEEEEEC
Confidence 579999999986543 356788886655 44444433 2456999999
Q ss_pred CHHHHHHHHHHhcCCcc--------CCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVF--------ASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f--------~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..+ .+.+++|.|+.+
T Consensus 75 ~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 75 STEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp CHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred CHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 99999999999999888 567799999876
No 116
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.34 E-value=1e-06 Score=68.58 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=58.5
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcC-CCcchhhhhhhHHHHHHHHhhhhcCCceEEEec--CCCCeEEEEeCCHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFG-KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL--KSFRRMRVNYESSA 115 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L--kSF~RiiVVF~~~e 115 (238)
.+|||.||+..+-+ +.|+.+|++|| +|. ..... ++.|-++|.|.+.+
T Consensus 29 ~~l~VgnLp~~~te-----~dL~~~F~~~G~~v~-------------------------~v~i~~~~~rGfaFV~F~~~e 78 (111)
T 2jvr_A 29 YRITMKNLPEGCSW-----QDLKDLARENSLETT-------------------------FSSVNTRDFDGTGALEFPSEE 78 (111)
T ss_dssp EEEEEECSSCCCCH-----HHHHHHHHHHTCCCS-------------------------EEECSSCSSSCCEEEEESSHH
T ss_pred CEEEEECCCCCCCH-----HHHHHHHHHhCCeeE-------------------------EEEEEcCCCCCEEEEEECCHH
Confidence 49999999986544 45678888776 443 22221 46678999999999
Q ss_pred HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 116 AAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+|.+|...|++..|.|..|+|.+++.
T Consensus 79 ~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 79 ILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp HHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred HHHHHHHHcCCCEECCeEEEEEECCC
Confidence 99999999999999999999999875
No 117
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.33 E-value=1.7e-06 Score=67.61 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=59.6
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC------CeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF------RRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF------~RiiVVF~ 112 (238)
+||+|.|||..+-+ +.|+.+|++| |.+..+...+.. |-++|.|.
T Consensus 3 ~~l~v~nlp~~~~~-----~~l~~~f~~~-------------------------G~i~~v~~~~~~~~~~~~g~afV~f~ 52 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQ-----EEFRSLFGSI-------------------------GEIESCKLVRDKITGQSLGYGFVNYI 52 (167)
T ss_dssp SEEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred ceEEEcCCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEeCCCCCcceeEEEEEEC
Confidence 69999999987643 3466778855 556566555544 67999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|+..+++..+.|+.++|.++.+
T Consensus 53 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 53 DPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 99999999999999999999999999876
No 118
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.32 E-value=2.5e-06 Score=67.88 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+...+ +.|-++|.|
T Consensus 70 ~~~l~v~nl~~~~~~-----~~l~~~F~~~G~-------------------------v~~~~i~~~~~~g~~~g~afV~f 119 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSP-----DTLRRVFEKYGR-------------------------VGDVYIPRDRYTKESRGFAFVRF 119 (158)
T ss_dssp CCEEEEESCCTTCCH-----HHHHHHHHHHSC-------------------------EEEEECCCCSSCTTSCCEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEeecCCCCccceEEEEEE
Confidence 469999999986544 346678885654 54444443 446799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+.++|.+|...|++..|.|..|+|.|+++.
T Consensus 120 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 120 HDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp SBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 9999999999999999999999999999874
No 119
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.32 E-value=2.4e-06 Score=67.73 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=59.6
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
.||||.||+..+ -.+.|+.+|++||+| ..+...+ +.+-++|.|.
T Consensus 48 ~~l~V~nLp~~~-----te~~L~~~F~~~G~i-------------------------~~v~i~~~~~~g~~~G~afV~F~ 97 (135)
T 2lea_A 48 TSLKVDNLTYRT-----SPDTLRRVFEKYGRV-------------------------GDVYIPRDRYTKESRGFAFVRFH 97 (135)
T ss_dssp CCEEEECCCSSC-----HHHHHHHHHGGGSCC-------------------------SEEECCCCSSSSSCCSCCEEECS
T ss_pred CEEEEeCCCCCC-----CHHHHHHHHHhcCCE-------------------------EEEEEEecCCCCccceEEEEEEC
Confidence 499999999764 334677888866654 4444332 3457999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
+.++|.+|...|++..|.|+.|+|.|++...
T Consensus 98 ~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 98 DKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999998733
No 120
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.30 E-value=1.4e-06 Score=70.73 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=59.1
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeCC
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYES 113 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~~ 113 (238)
||||.||+..+-. +.|+.+|++||+ +..+...+. .+-++|.|.+
T Consensus 74 ~l~V~nLp~~~t~-----~~L~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~f~~ 123 (165)
T 1rk8_A 74 ILFVTSIHEEAQE-----DEIQEKFCDYGE-------------------------IKNIHLNLDRRTGFSKGYALVEYET 123 (165)
T ss_dssp EEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTSSEEEEEEEEESS
T ss_pred EEEEeCCCCCCCH-----HHHHHHhhcCCC-------------------------EEEEEEEecCCCCcEeeEEEEEECC
Confidence 7999999986543 456788886654 555544432 4679999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
.++|..|...|++..|.|..|+|.|+....
T Consensus 124 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 124 HKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 999999999999999999999999997733
No 121
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.30 E-value=4.4e-06 Score=66.74 Aligned_cols=76 Identities=22% Similarity=0.119 Sum_probs=60.1
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEE
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRV 109 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiV 109 (238)
.-+++|+|.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|
T Consensus 37 ~~~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV 86 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTE-----EQIYELFSKSGD-------------------------IKKIIMGLDKMKKTACGFCFV 86 (156)
T ss_dssp TTCCEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCccceEEEE
Confidence 34579999999976544 456788886655 44444433 2356999
Q ss_pred EeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 110 NYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.|.+.++|.+|...|++..|.|..|+|.|+++
T Consensus 87 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 87 EYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp EESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 99999999999999999999999999999987
No 122
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.30 E-value=1.2e-06 Score=63.70 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=59.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..+|||.||+..+-+ +.|+.+|++| ++. .+..-++.|-++|.|.+.++|
T Consensus 5 ~~~l~V~nLp~~~t~-----~~l~~~F~~~-~v~-------------------------~~~i~~~~g~afV~f~~~~~a 53 (88)
T 1wg1_A 5 SSGILVKNLPQDSNC-----QEVHDLLKDY-DLK-------------------------YCYVDRNKRTAFVTLLNGEQA 53 (88)
T ss_dssp CCCEEEESCCSSCCH-----HHHHHHTCSS-CCC-------------------------CEEEEGGGTEEEECCSCHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHhhC-CeE-------------------------EEEEeCCCcEEEEEECCHHHH
Confidence 469999999986544 4567788866 443 322237788999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+|...|++..+.|+.++|.+++.
T Consensus 54 ~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 54 QNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp HHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHhCCCeECCcEEEEEEcCC
Confidence 999999999999999999999876
No 123
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.29 E-value=1.1e-06 Score=61.37 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=52.7
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeCC
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYES 113 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~~ 113 (238)
||+|.|||..+-+ +.|+.+|++||++. .+... ++.|-++|.|.+
T Consensus 1 ~l~v~nLp~~~t~-----~~l~~~F~~~G~i~-------------------------~v~i~~~~~~~~~~g~afV~f~~ 50 (75)
T 1iqt_A 1 KIFVGGLSPDTPE-----EKIREYFGGFGEVE-------------------------SIELPMDNKTNKRRGFCFITFKE 50 (75)
T ss_dssp CEEESCCCSSCCH-----HHHHHHHHHHSCCS-------------------------EECCCCSCCCSSSCCCEEEECSS
T ss_pred CEEEeCCCCCCCH-----HHHHHHHHhcCCeE-------------------------EEEEEecCCCCCcCCEEEEEECC
Confidence 6999999987644 45678888666543 33332 345679999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
.++|.+|... ++..+.|+.++|.+|
T Consensus 51 ~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 51 EEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp SHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred HHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 9999999985 778899999988765
No 124
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.29 E-value=1.3e-06 Score=67.01 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=58.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
..||||.||+..+-+ +.|+.+|++||+ +..+..++ +.+-++|.|
T Consensus 36 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f 85 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTA-----QDLEAHFSSCGS-------------------------INRITILCDKFSGHPKGYAYIEF 85 (124)
T ss_dssp HTEEEEEEECTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEEECTTSSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEEecCCCCCcccEEEEEE
Confidence 359999999976543 456788886655 44444432 356799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+.++|.+|. .|++..|.|..|+|.+++..
T Consensus 86 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 86 AERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp SSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 9999999999 89999999999999999873
No 125
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.29 E-value=2.2e-06 Score=61.38 Aligned_cols=80 Identities=9% Similarity=0.103 Sum_probs=59.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..||||.||+..+-+ +.|+.+|++||++.-. .....+.+......++.+-++|.|.+.++|
T Consensus 6 ~~~l~V~nLp~~~t~-----~~l~~~F~~~~~~~g~--------------~~~~~~~v~~~~~~~~kg~afV~f~~~~~a 66 (87)
T 2hzc_A 6 ARRLYVGNIPFGITE-----EAMMDFFNAQMRLGGL--------------TQAPGNPVLAVQINQDKNFAFLEFRSVDET 66 (87)
T ss_dssp GGEEEEESCCTTCCH-----HHHHHHHHHHHHHTTC--------------CSSSSCSEEEEEECSSSSEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHHHhhhccc--------------ccCCCCcceEEEecCCCcEEEEEcCCHHHH
Confidence 469999999986643 4567788866211100 000111677888888889999999999999
Q ss_pred HHHHHHhcCCccCCcceEEE
Q psy258 118 AKARINLHQSVFASSKINVY 137 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIy 137 (238)
.+|. .|++..|.|+.++|.
T Consensus 67 ~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 67 TQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp HHHG-GGTTCEETTEECEEE
T ss_pred HHHH-hcCCCEECCeEEEEe
Confidence 9999 999999999888875
No 126
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=1.6e-06 Score=65.78 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=58.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF 111 (238)
..||||.||+..+-+ +.|+.+|++|| .+..+... ++.+-++|.|
T Consensus 25 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~~g~~~g~afV~f 74 (114)
T 2cq4_A 25 ARTVFCMQLAARIRP-----RDLEDFFSAVG-------------------------KVRDVRIISDRNSRRSKGIAYVEF 74 (114)
T ss_dssp HTEEEEESCCTTCCH-----HHHHHHHTTTS-------------------------CEEEEEECCSCCSSSCCCCEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhCC-------------------------CEeEEEEEecCCCCccCcEEEEEe
Confidence 359999999976544 45678888554 45555554 3446799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|. .|++..|.|..|+|.|++.
T Consensus 75 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 75 CEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp SCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 9999999999 9999999999999999865
No 127
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=1.4e-06 Score=66.83 Aligned_cols=73 Identities=16% Similarity=0.380 Sum_probs=58.9
Q ss_pred cEEEecCCC----CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHH
Q psy258 40 SLIITNLNP----DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSA 115 (238)
Q Consensus 40 TLiitnL~~----~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~e 115 (238)
|+.|.-.+. ..|. ++|...|.+.|++||++. ....-. .|+||.|.+.+
T Consensus 9 tv~V~~~~~~~~~~~fd-~~l~~~L~~~F~~~G~Vi-------------------------~vr~~~--d~~fVtF~d~~ 60 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFD-DALIDELLQQFASFGEVI-------------------------LIRFVE--DKMWVTFLEGS 60 (91)
T ss_dssp EEEEEEECSSTTTCSCC-HHHHHHHHHHHHTTCCEE-------------------------EEEECS--SSEEEEESSHH
T ss_pred eEEEEeccCccccccCC-HHHHHHHHHHHHhCCCeE-------------------------EEEEec--CCEEEEECChH
Confidence 788777662 4566 899999999999776643 333332 56999999999
Q ss_pred HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 116 AAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 116 aA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+|.+|.. |++..+.|+.++|.++.+
T Consensus 61 sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 61 SALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 9999998 999999999999999765
No 128
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.28 E-value=3.4e-06 Score=59.05 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=55.4
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~ 112 (238)
.||+|.|||..+-+ + .|+.+|++||++. ..... ++.|-++|.|.
T Consensus 1 ~~l~v~nlp~~~t~-~----~l~~~F~~~G~v~-------------------------~v~i~~~~~~~~~~g~afV~f~ 50 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQ-E----GLREYFGQFGEVK-------------------------ECLVMRDPLTKRSRGFGFVTFM 50 (77)
T ss_dssp CCEEEESCCSSCCS-H----HHHHHHTTTSCCC-------------------------CEEEECCCCSSSCSSEEEECCC
T ss_pred CEEEEeCCCCCCCH-H----HHHHHHHhcCCEE-------------------------EEEEecCCCCCCcCceEEEEEc
Confidence 48999999987766 3 4667888776654 33332 23568999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
+.++|.+|...++ ..+.|+.++|.+|
T Consensus 51 ~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 51 DQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 9999999999999 8899999999886
No 129
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.27 E-value=8e-07 Score=71.89 Aligned_cols=84 Identities=10% Similarity=0.088 Sum_probs=65.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhh-hhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLL-SQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
..||||.||+..+-+ +.|+.+|++||++. .++ .....+.....-++.|-++|.|.+.++
T Consensus 4 ~~~l~V~nLp~~~te-----~~l~~~F~~~g~i~---------------g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~ 63 (198)
T 2yh0_A 4 ARRLYVGNIPFGITE-----EAMMDFFNAQMRLG---------------GLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 63 (198)
T ss_dssp CCEEEEESCCTTCCH-----HHHHHHHHHHHHHH---------------TCCSSSSCSEEEEEEETTTTEEEEEESCSHH
T ss_pred eeEEEEcCCCCCCCH-----HHHHHHHHHHHhhc---------------ccccCCCCceEEeEecCCCCEEEEEeCCHHH
Confidence 579999999987644 45678899886533 000 000166777777888999999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
|.+|+ .|++..|.|+.++|.+++..
T Consensus 64 A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 64 TTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp HHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred HHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 99999 89999999999999998763
No 130
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.27 E-value=9.3e-07 Score=64.09 Aligned_cols=72 Identities=24% Similarity=0.280 Sum_probs=55.6
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
++|||.||+..+-+ +.|+.+|++||+ +..+...+ +.|-++|.|.
T Consensus 2 ~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f~ 51 (90)
T 2ki2_A 2 RNIYVGNLVYSATS-----EQVKELFSQFGK-------------------------VFNVKLIYDRETKKPKGFGFVEMQ 51 (90)
T ss_dssp EEEEEEEECTTSSH-----HHHTTTHHHHTC-------------------------CSEEEECCCSSSCCCCEEEEEEEC
T ss_pred cEEEECCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEEEcCCCCCcceEEEEEEC
Confidence 48999999986544 346677886655 44444433 3457999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.+ |.+|...|++..+.|+.++|.+|..
T Consensus 52 ~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 52 EES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp TTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 999 9999999999999999999999987
No 131
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=2.9e-06 Score=63.27 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEEEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMRVN 110 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~RiiVV 110 (238)
+.||||.||+..+-+ +.|+.+|++| | +..+...+ +.+-++|.
T Consensus 15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G-i~~v~i~~~~~~~g~~~g~afV~ 63 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTE-----ESIKEFFRGL-------------------------N-ISAVRLPREPSNPERLKGFGYAE 63 (104)
T ss_dssp CEEEEEESCCSSCCH-----HHHHHHTTTS-------------------------C-EEEEECCBCSSCTTSBCSCEEEE
T ss_pred CCEEEEeCCCCcCCH-----HHHHHHHHHC-------------------------C-ceEEEEecCCCCCCCcCeEEEEE
Confidence 469999999987544 3566778855 5 44444432 24569999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
|.+.++|.+|. .|++..|.|..|+|.|+++.
T Consensus 64 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 64 FEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp ESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred ECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 99999999999 99999999999999999873
No 132
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.27 E-value=2.7e-06 Score=73.26 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=59.0
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAAA 117 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~eaA 117 (238)
++|+|.||+..+- .+.|+.+|++| |.+..+...+.- +-++|.|.+.++|
T Consensus 208 ~~l~v~nl~~~~~-----~~~l~~~F~~~-------------------------G~i~~v~~~~~~~g~afV~f~~~~~A 257 (282)
T 3pgw_A 208 HILFLTNLPEETN-----ELMLSMLFNQF-------------------------PGFKEVRLVPGRHDIAFVEFDNEVQA 257 (282)
T ss_pred CEEEEeCCCCcCC-----HHHHHHHHHhc-------------------------CCeEEEEEecCCCcEEEEEeCCHHHH
Confidence 5899999997543 34667788855 556666666655 6899999999999
Q ss_pred HHHHHHhcCCccC-CcceEEEEeC
Q psy258 118 AKARINLHQSVFA-SSKINVYFVQ 140 (238)
Q Consensus 118 ~~Ar~~L~~~~f~-g~~lrIyFAq 140 (238)
.+|+..|++..|. |+.|+|.||+
T Consensus 258 ~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 258 GAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999999998 9999999986
No 133
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.27 E-value=5.9e-06 Score=64.52 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=59.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~ 113 (238)
.++|||.||+..+-+ +.|+.+|++||++. . .-+.+..- ++.|-++|.|.+
T Consensus 23 ~~~lfV~nL~~~~te-----~~L~~~F~~~G~v~-------------------~--~~v~i~~d~~tg~~rG~aFV~f~~ 76 (131)
T 2m2b_A 23 NDTIILRNLNPHSTM-----DSILGALAPYAVLS-------------------S--SNVRVIKDKQTQLNRGFAFIQLST 76 (131)
T ss_dssp CCEEEECSCCTTCCS-----HHHHHHHGGGCCCC-------------------T--TTEECCBCSSSSSBCSCEEEECCH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHHhCCcc-------------------e--eeEEEEEcCCCCCcceEEEEEECC
Confidence 569999999987655 34667899887764 0 00222222 345679999999
Q ss_pred HHHHHHHHHHhcCC----ccCCcceEEEEeCC
Q psy258 114 SAAAAKARINLHQS----VFASSKINVYFVQP 141 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~----~f~g~~lrIyFAq~ 141 (238)
. +|.+|...|++. .+.|+.|+|.|+++
T Consensus 77 ~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 77 I-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp H-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred H-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 9 999999999998 89999999999987
No 134
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.26 E-value=2.9e-06 Score=66.27 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=59.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.|++ + -.+.|+.+|++||+|. .+...++-+-++|.|.+.++|
T Consensus 39 ~~~lfVgnl~--~-----te~~L~~~F~~~G~I~-------------------------~v~i~~~kg~aFV~f~~~~~A 86 (121)
T 2bz2_A 39 GNTLYVYGED--M-----TPTLLRGAFSPFGNII-------------------------DLSMDPPRNCAFVTYEKMESA 86 (121)
T ss_dssp CCEEEEECSS--C-----CHHHHHHHHSTTCCCS-------------------------CEEEETTTTEEEEECSSHHHH
T ss_pred CCEEEEcCCC--C-----CHHHHHHHHHccCCEE-------------------------EEEEeCCCCEEEEEECCHHHH
Confidence 3699999963 1 2356778888666544 444457888999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.+|...|++..+.|..++|.|++..
T Consensus 87 ~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 87 DQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp HHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred HHHHHHhCCCEECCeEEEEEEeCCC
Confidence 9999999999999999999999873
No 135
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=6.7e-07 Score=66.27 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=56.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF~~ 113 (238)
.++|||.||+..+-+ +.|+.+|++|+. +.+..-+ +.+-++|.|.+
T Consensus 15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~~~--------------------------~~~~~~~~~~~~~g~afV~f~~ 63 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTE-----ETLKESFDGSVR--------------------------ARIVTDRETGSSKGFGFVDFNS 63 (102)
T ss_dssp CSSEEEECCCTTCCH-----HHHHHTSTTCSE--------------------------EEEEECSSSCSEEEEEEEECSS
T ss_pred CCEEEEeCCCCccCH-----HHHHHHhcCCeE--------------------------EEEEecCCCCCcCcEEEEEECC
Confidence 469999999986544 345677774422 2222222 23579999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.++|.+|...|++..|.|+.|+|.|+++.
T Consensus 64 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 64 EEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 99999999999999999999999999873
No 136
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.26 E-value=3.9e-06 Score=68.42 Aligned_cols=75 Identities=23% Similarity=0.409 Sum_probs=60.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-CCCeEEEEeCCHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-SFRRMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-SF~RiiVVF~~~ea 116 (238)
.++|+|.||+..+-+ +.|+.+|++||- .+..+..++ +-+.++|.|.+.++
T Consensus 120 ~~~l~v~nl~~~~~~-----~~l~~~f~~~G~------------------------~v~~v~i~~~~~g~afV~f~~~~~ 170 (198)
T 1qm9_A 120 SATLHLSNIPPSVSE-----EDLKVLFSSNGG------------------------VVKGFKFFQKDRKMALIQMGSVEE 170 (198)
T ss_dssp CCEEEECCCCTTCCH-----HHHHHHHHHTTS------------------------CCCEEEESSTTSSCEEEECSSHHH
T ss_pred ccEEEEeCCCCCCCH-----HHHHHHHHHcCC------------------------CceEEEEEeCCCcEEEEEeCCHHH
Confidence 359999999976533 456778885540 455555544 56889999999999
Q ss_pred HHHHHHHhcCCccC-CcceEEEEeCC
Q psy258 117 AAKARINLHQSVFA-SSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~-g~~lrIyFAq~ 141 (238)
|.+|+..|++..+. |..++|.|+++
T Consensus 171 A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 171 AVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred HHHHHHHhcCCccCCCCeEEEEeecc
Confidence 99999999999999 89999999986
No 137
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.5e-06 Score=66.58 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=58.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..+|+|.||+..+-. +.|+.+|++| |.+..+..++. .|-++|.|
T Consensus 87 ~~~l~v~nl~~~~t~-----~~l~~~f~~~-------------------------G~i~~~~i~~~~~~~~~~g~afV~f 136 (166)
T 3md3_A 87 TFNLFVGDLNVNVDD-----ETLRNAFKDF-------------------------PSYLSGHVMWDMQTGSSRGYGFVSF 136 (166)
T ss_dssp CEEEEEESCCTTCCH-----HHHHHHHTTS-------------------------TTEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CceEEECCCCCCCCH-----HHHHHHHhcc-------------------------CCeeEEEEEecCCCCCcceEEEEEe
Confidence 459999999986533 4566778855 55555555533 34599999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
.+.++|.+|...|++..+.|+.++|.||+
T Consensus 137 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 137 TSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99999999999999999999999999986
No 138
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.25 E-value=1.3e-06 Score=69.17 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=63.2
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcC-------CceEEEecCCCCeEEEEe
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFG-------KPKSFQYLKSFRRMRVNY 111 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~iv~fv~LkSF~RiiVVF 111 (238)
.+|||.|||..+-+ +.|+.+|++||++. | .+......++.|-++|.|
T Consensus 5 ~~l~V~nLp~~~t~-----~~l~~~F~~~g~~~---------------------g~~~~~~~~v~~~~~~~~~g~afV~f 58 (172)
T 2g4b_A 5 RRLYVGNIPFGITE-----EAMMDFFNAQMRLG---------------------GLTQAPGNPVLAVQINQDKNFAFLEF 58 (172)
T ss_dssp GEEEEESCCTTCCH-----HHHHHHHHHHHHHT---------------------TCCSSSSCSEEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCcccCH-----HHHHHHHHHHhhhc---------------------ccccCCCCceeeeEecCCCCEEEEEe
Confidence 69999999986544 45667888885422 4 677777788889999999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|+ .+++..+.|+.++|.++..
T Consensus 59 ~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 59 RSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (172)
T ss_dssp SSHHHHHHHG-GGTTCEETTEECEEECCSS
T ss_pred CCHHHHHHHH-HhCCcEecCceeeecCCcc
Confidence 9999999999 8999999999999988765
No 139
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.25 E-value=4.7e-06 Score=70.45 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=60.4
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcC-CceEEEecC-CCCeEEEEeCCHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFG-KPKSFQYLK-SFRRMRVNYESSAA 116 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~fv~Lk-SF~RiiVVF~~~ea 116 (238)
++|+|.||+..+-+ +.|+.+|++| | .+..+..++ +-+.++|.|.+.++
T Consensus 152 ~~l~V~nlp~~~t~-----~~l~~~f~~~-------------------------G~~i~~v~i~~~~~g~afV~f~~~~~ 201 (229)
T 2adc_A 152 ATLHLSNIPPSVSE-----EDLKVLFSSN-------------------------GGVVKGFKFFQKDRKMALIQMGSVEE 201 (229)
T ss_dssp SEEEEECCCTTCCH-----HHHHHHHHTT-------------------------SCCEEEEEECSSSTTCEEEEESSHHH
T ss_pred CEEEEeCCCccCCH-----HHHHHHHHHc-------------------------CCCeeEEEEEECCCcEEEEEECCHHH
Confidence 59999999986533 4567788855 5 555666644 67899999999999
Q ss_pred HHHHHHHhcCCccC-CcceEEEEeCC
Q psy258 117 AAKARINLHQSVFA-SSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~-g~~lrIyFAq~ 141 (238)
|.+|+..|++..+. |..++|.|+++
T Consensus 202 A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 202 AVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred HHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99999999999999 99999999986
No 140
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.25 E-value=3.6e-06 Score=62.74 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=57.2
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEE
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMR 108 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~Rii 108 (238)
....||||.||+..+-+ + .|+.+|++| | +..+...+ +.|-++
T Consensus 17 ~~~~~l~V~nLp~~~t~-~----~l~~~F~~~-------------------------G-i~~v~i~~~~~~~g~~~g~af 65 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTE-E----SIKEFFRGL-------------------------N-ISAVRLPREPSNPERLKGFGY 65 (100)
T ss_dssp ---CEEEESCCSSCCSS-S----HHHHHSCSS-------------------------C-EEEEECSCCTTTTCCCCSCEE
T ss_pred CCCcEEEEeCCCCCCCH-H----HHHHHHHhc-------------------------C-CeEEEEEecCCcCCccCeEEE
Confidence 34569999999988766 3 355777755 5 44444443 346799
Q ss_pred EEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 109 VNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 109 VVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.|.+.++|.+|. .|++..|.|+.++|.++++
T Consensus 66 V~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 66 AEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp EEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred EEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 9999999999999 9999999999999999886
No 141
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.25 E-value=5.1e-06 Score=68.97 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=59.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~ 112 (238)
.++|||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|.
T Consensus 88 ~~~l~V~nLp~~~te-----~~L~~~F~~~G~-------------------------I~~v~i~~d~~g~~kG~afV~F~ 137 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSD-----ADIQELFAEFGT-------------------------LKKAAVDYDRSGRSLGTADVHFE 137 (177)
T ss_dssp CEEEEEECCCSCCCH-----HHHHHHHHHTSC-------------------------CSEEEECCCTTSSCSCCEEEEES
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEECCCCCEeeEEEEEeC
Confidence 359999999986654 346678886655 44444433 4577999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|..|...|++..|.|..|+|.||..
T Consensus 138 ~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 138 RRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp CHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 99999999999999999999999999976
No 142
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.24 E-value=7.4e-06 Score=62.83 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=56.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..+|||.||+..+-+ ++ |+.+|++| |.+..+...+. +-++|.|.+.++|
T Consensus 16 ~~~l~V~nLp~~~t~-~~----l~~~F~~~-------------------------G~v~~~~i~~~-g~afV~f~~~~~a 64 (115)
T 3beg_B 16 ENRVVVSGLPPSGSW-QD----LKDHMREA-------------------------GDVCYADVYRD-GTGVVEFVRKEDM 64 (115)
T ss_dssp -CCEEEEECCSSCCT-TH----HHHHHGGG-------------------------SCEEEEEECTT-SEEEEEESSHHHH
T ss_pred CcEEEEeCCCCCCCH-HH----HHHHHHhc-------------------------CCeEEEEEecC-CEEEEEECCHHHH
Confidence 469999999987766 33 45678855 55555555555 8899999999999
Q ss_pred HHHHHHhcCCccCCcc-----eEEEEeCC
Q psy258 118 AKARINLHQSVFASSK-----INVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~-----lrIyFAq~ 141 (238)
..|...|++..|.|.. +++..+.+
T Consensus 65 ~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 65 TYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp HHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred HHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 9999999999999988 55555443
No 143
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.24 E-value=4e-06 Score=68.67 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=59.7
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
.++|+|.||+..+- .+.|+.+|++| |.+..+..++. -+-++|.|
T Consensus 125 ~~~l~v~nlp~~~t-----~~~l~~~f~~~-------------------------G~v~~v~i~~~~~~g~~~g~afV~F 174 (216)
T 2qfj_A 125 FNRIYVASVHQDLS-----DDDIKSVFEAF-------------------------GKIKSATLARDPTTGKHKGYGFIEY 174 (216)
T ss_dssp SCEEEEECCCTTCC-----HHHHHHHHTTS-------------------------SCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CcEEEEeCCCCcCC-----HHHHHHHHhcc-------------------------CCeeEEEEEecCCCCCcCceEEEEe
Confidence 46999999997643 34567788855 55555555543 45699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..|.|+.++|.|+++
T Consensus 175 ~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 175 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp SSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred cCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 999999999999999999999999999987
No 144
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.23 E-value=6.1e-06 Score=62.98 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=53.1
Q ss_pred HHHHHHHHhh-hhcCCceEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 80 ALKEQIETLL-SQFGKPKSFQYLKS-----FRRMRVNYESSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 80 ~~~~~~~~~~-~~~~~iv~fv~LkS-----F~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
.+.+.+++.+ ++||.+..+...+. .|.++|.|.+.++|.+|...|+|..|.|+.++|.|+
T Consensus 38 ~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 38 EFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 4566788888 89999999888764 578999999999999999999999999999999886
No 145
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.23 E-value=3.7e-06 Score=66.03 Aligned_cols=73 Identities=16% Similarity=0.347 Sum_probs=59.1
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~ 112 (238)
+||+|.|||..+-+ +.|+.+|++| |++..+...+. .|-++|.|.
T Consensus 4 ~~l~v~nlp~~~~~-----~~l~~~f~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f~ 53 (168)
T 1b7f_A 4 TNLIVNYLPQDMTD-----RELYALFRAI-------------------------GPINTCRIMRDYKTGYSYGYAFVDFT 53 (168)
T ss_dssp SEEEEECCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCEETTTTEECSEEEEEES
T ss_pred cEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCeeEEEEEEeCCCCccceEEEEEEC
Confidence 69999999986544 3466788855 55555555443 367999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|..|+..+++..+.|+.++|.++.+
T Consensus 54 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 54 SEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 99999999999999999999999999876
No 146
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.54 E-value=1.5e-07 Score=71.80 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=60.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe----cCCCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY----LKSFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~----LkSF~RiiVVF~~ 113 (238)
.++|||.||+..+-+ +.|+.+|++||++..-.- .-.+.+.+.. -++.+-++|.|.+
T Consensus 7 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i~~~~~---------------~~~~~v~i~~~~~~g~~~g~afV~f~~ 66 (116)
T 2lcw_A 7 NNTIFVQGLGENVTI-----ESVADYFKQIGIIKTNKK---------------TGQPMINLYTDRETGKLKGEATVSFDD 66 (116)
Confidence 469999999976544 356788998887650000 0000011111 2345679999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
.++|.+|...|++..|.|+.|+|.++++.
T Consensus 67 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 67 PPSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 99999999999999999999999999873
No 147
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.22 E-value=3.8e-06 Score=61.05 Aligned_cols=72 Identities=10% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~ 112 (238)
..+|+|.||+..+-+ +.|+.+|++| + +..+...+ +.|-++|.|.
T Consensus 10 ~~~l~v~nLp~~~t~-----~~l~~~F~~~-~-------------------------i~~v~i~~~~~g~~~g~afV~f~ 58 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTE-----KNVMEFLAPL-K-------------------------PVAIRIVRNAHGNKTGYIFVDFS 58 (91)
T ss_dssp CCEEEEECCCSSCCH-----HHHHHHHTTS-C-------------------------CSEEEEEECTTSCEEEEEEEECS
T ss_pred ccEEEEECCCCCCCH-----HHHHHHHhhC-C-------------------------ceEEEEEECCCCCCceEEEEEEC
Confidence 579999999986544 3467788855 3 44444333 2457999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|.. +++..|.|+.++|.+++.
T Consensus 59 ~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 59 NEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp SHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 9999999999 999999999999999987
No 148
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.21 E-value=1.5e-06 Score=69.19 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=58.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEE-EecCCCCeEEEEeCCHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSF-QYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~f-v~LkSF~RiiVVF~~~ea 116 (238)
.++|+|.||+..+-. +.|+.+|++||++. .+ ..-++.|-++|.|.+.++
T Consensus 99 ~~~l~v~nlp~~~t~-----~~l~~~F~~~g~v~-------------------------~~~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 99 ARTLLAKNLSFNITE-----DELKEVFEDALEIR-------------------------LVSQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp GGEEEEESCCSSCCH-----HHHHHHCTTCSEEE-------------------------EECSSSSCCSEEEEECSSHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCeEE-------------------------EecCCCCCceEEEEEECCHHH
Confidence 359999999976533 45678888665543 22 111345679999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+|...|++..+.|..++|.||++
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEECSS
T ss_pred HHHHHHHhCCCEECCeEEEEEecCC
Confidence 9999999999999999999999986
No 149
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.20 E-value=3e-06 Score=73.12 Aligned_cols=75 Identities=19% Similarity=0.073 Sum_probs=57.3
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
++|||.||+..+-+ +.|+.+|++||.+ .+..+..++ +.+-++|.|.
T Consensus 69 ~~lfVgnL~~~~te-----~~L~~~F~~~G~~-----------------------~v~~v~i~~d~~tg~skGfaFV~f~ 120 (229)
T 3q2s_C 69 IALYIGNLTWWTTD-----EDLTEAVHSLGVN-----------------------DILEIKFFENRANGQSKGFALVGVG 120 (229)
T ss_dssp CEEEEESCCTTCCH-----HHHHHHHHTTTCC-----------------------CEEEEEEEECTTTCCEEEEEEEEES
T ss_pred cEEEEeCCCCCCCH-----HHHHHHHHHHCCc-----------------------ceEEEEEEecCCCCccceEEEEEEC
Confidence 47999999986654 3566788866600 344443332 2345999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...|++..|.|+.|+|.|++.
T Consensus 121 ~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 121 SEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp CTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred CHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 99999999999999999999999999865
No 150
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.20 E-value=1.3e-05 Score=62.76 Aligned_cols=55 Identities=25% Similarity=0.148 Sum_probs=44.2
Q ss_pred HhhhhcCCceEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 87 TLLSQFGKPKSFQYLKS--FRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 87 ~~~~~~~~iv~fv~LkS--F~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.+++||.+.++...+. .|.++|.|.+.++|.+|...|+|..|.|+.+++.|+..
T Consensus 36 ~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 36 EECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 33335555666555543 58999999999999999999999999999999999843
No 151
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.20 E-value=5.2e-06 Score=63.14 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=57.2
Q ss_pred CCCCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCe
Q psy258 33 NDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRR 106 (238)
Q Consensus 33 ~~~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~R 106 (238)
+...-+.+|||.||+..+-+ +.|+.+|++|| .+..+...+ +.|-
T Consensus 20 ~~~~~~~~lfV~nLp~~~te-----~~L~~~F~~~G-------------------------~i~~v~i~~~~~tg~~kg~ 69 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQ-----EGLREYFGQFG-------------------------EVKECLVMRDPLTKRSRGF 69 (109)
T ss_dssp ------CCEEEESCCTTCCH-----HHHHHHHTTTS-------------------------CEEEEEECCCTTTCCCTTC
T ss_pred ccCCCCCEEEEeCCCCCCCH-----HHHHHHHHccC-------------------------CeEEEEEEECCCCCCcCcE
Confidence 33444679999999986554 35678888554 455555544 3467
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 107 MRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 107 iiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|.|.+.++|.+|...++ ..+.|+.++|.++.+
T Consensus 70 afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 70 GFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAFP 103 (109)
T ss_dssp EEEEESSHHHHHHHHHSSC-EEETTEEEEEEECCC
T ss_pred EEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEccC
Confidence 9999999999999999875 779999999999886
No 152
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=1.7e-06 Score=66.87 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=58.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCCH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYESS 114 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~~ 114 (238)
..+|||.||+..+-+ +.|+.+|++||.|. .++.+..- ++-|-++|.|.+.
T Consensus 25 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~v~----------------------~~~~~~~~~~g~~~G~afV~F~~~ 77 (124)
T 1wel_A 25 GFCVYLKGLPFEAEN-----KHVIDFFKKLDIVE----------------------DSIYIAYGPNGKATGEGFVEFRNE 77 (124)
T ss_dssp CCEEEEECCCTTCCH-----HHHHHHSCSSCBCT----------------------TTCEEEECTTSSEEEEEEEEBSSS
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHhcCCcc----------------------ceEEEEECCCCCCCeEEEEEECCH
Confidence 469999999976554 45778999887765 11222211 2345699999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|.+|.. +++..|.|+.|+|.++..
T Consensus 78 ~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 78 ADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp HHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred HHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 99999999 999999999999999865
No 153
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=1.1e-06 Score=63.03 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=54.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
+.+|||.||+..+-+ +.|+.+|++||+ +..+...+. .+-++|.|
T Consensus 5 ~~~l~v~nlp~~~t~-----~~l~~~f~~~G~-------------------------i~~~~i~~~~~~~~~~g~afV~f 54 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTD-----QDLVKLCQPYGK-------------------------IVSTKAILDKTTNKCKGYGFVDF 54 (85)
T ss_dssp CCEEEEESCCTTCCH-----HHHHTTSTTTSC-------------------------EEEEEEECCSSSCSCCSEEEEEE
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCCcCcEEEEEE
Confidence 569999999986544 346677885554 544444332 45699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
.+.++|.+|...|++..+.|..+++.++
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 55 DSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp SCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 9999999999999999998877776553
No 154
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.17 E-value=7.7e-06 Score=64.19 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=56.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..+|+|.||+..+-+ +.|+.+|++||+ +..+...+. -|-++|.|
T Consensus 89 ~~~l~v~nl~~~~t~-----~~l~~~f~~~G~-------------------------i~~~~i~~~~~~~~~~g~afV~f 138 (168)
T 1b7f_A 89 DTNLYVTNLPRTITD-----DQLDTIFGKYGS-------------------------IVQKNILRDKLTGRPRGVAFVRY 138 (168)
T ss_dssp TCEEEEESCCTTCCH-----HHHHHHHTSSSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCCEEEeCCCCCCCH-----HHHHHhhhcCCc-------------------------EEEEEEEEcCCCCCcceEEEEEE
Confidence 469999999976543 457788885554 544444433 25699999
Q ss_pred CCHHHHHHHHHHhcCCccCC--cceEEEEe
Q psy258 112 ESSAAAAKARINLHQSVFAS--SKINVYFV 139 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g--~~lrIyFA 139 (238)
.+.++|.+|...|++..+.| .+++|.||
T Consensus 139 ~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 139 NKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp SSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999977 88999886
No 155
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=6.1e-06 Score=65.06 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=56.4
Q ss_pred CcEEEec--CCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 39 KSLIITN--LNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 39 ~TLiitn--L~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
++|||+| |+..+=+ +.|+.+|++|| .+..+...+..+=++|.|.+.++
T Consensus 26 ~~L~V~Ng~L~~~~te-----~~L~~~F~~fG-------------------------~v~~v~i~~~rgfaFV~f~~~~~ 75 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSR-----NQLLPVLEKCG-------------------------LVDALLMPPNKPYSFARYRTTEE 75 (114)
T ss_dssp SEEEEETCTGGGTCCH-----HHHHHHHHHHS-------------------------CEEEEECCTTCSCEEEEESSHHH
T ss_pred CEEEEECCCCCCCCCH-----HHHHHHHHhcC-------------------------CeEEEEEeCCCCEEEEEECCHHH
Confidence 4899966 8865433 46778888665 45555555555679999999999
Q ss_pred HHHHHHHhcCCcc-----CCcceEEEEeCC
Q psy258 117 AAKARINLHQSVF-----ASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f-----~g~~lrIyFAq~ 141 (238)
|.+|...|++..+ .+.++.+.|++.
T Consensus 76 A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 76 SKRAYVTLNGKEVVDDLGQKITLYLNFVEK 105 (114)
T ss_dssp HHHHHHHTTTCEEECTTSCEEECEEEEESC
T ss_pred HHHHHHHhCCCEEccccCCCcEEEEEeccc
Confidence 9999999999876 466899999986
No 156
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.15 E-value=7.1e-06 Score=66.88 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=59.9
Q ss_pred CcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHH
Q psy258 39 KSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAA 116 (238)
Q Consensus 39 ~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~ea 116 (238)
++|||.||+. .+-+ +.|+.+|++|| .+..+...+.. |-++|.|.+.++
T Consensus 4 ~~l~v~nlp~~~~~~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~g~afV~f~~~~~ 53 (198)
T 1qm9_A 4 SVLLVSNLNPERVTP-----QSLFILFGVYG-------------------------DVQRVKILFNKKENALVQMADGNQ 53 (198)
T ss_dssp CEEEEECCCSSSCCH-----HHHHHHHHTTC-------------------------CCSEEECSTTCSSCCEEECTTTHH
T ss_pred cEEEEeCCCcccCCH-----HHHHHHHHhcC-------------------------CEEEEEEEeCCCCEEEEEECCHHH
Confidence 6999999998 6554 45667888554 45555555543 569999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
|..|+..|++..+.|..++|.+++..
T Consensus 54 a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 54 AQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp HHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred HHHHHHHhCCCeecCeEEEEEEecCC
Confidence 99999999999999999999999763
No 157
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.15 E-value=6.5e-06 Score=61.23 Aligned_cols=72 Identities=11% Similarity=0.231 Sum_probs=56.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
+.+|||.||+..+-+ +.|+.+|++| + +..+..++. .+-++|.|
T Consensus 15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~-------------------------g-i~~v~i~~~~~~g~~~g~afV~f 63 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQ-----GDIDAIFKDL-------------------------S-IRSVRLVRDKDTDKFKGFCYVEF 63 (103)
T ss_dssp CEEEEEESCCTTCCH-----HHHHHHTTTS-------------------------C-EEEEEEEECSSSCSEEEEEEEEE
T ss_pred CeEEEEeCCCCCCCH-----HHHHHHHHhC-------------------------C-ceEEEEeecCCCCccceEEEEEE
Confidence 469999999986544 3466778855 3 444444432 34699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|. .|++..|.|+.|+|.|+++
T Consensus 64 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 64 DEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp SSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 9999999999 9999999999999999987
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.15 E-value=4.6e-06 Score=65.93 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=57.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
.++|+|.||+..+-. +.|+.+|++| |.+..+...+. .|-++|.|
T Consensus 94 ~~~l~v~nlp~~~t~-----~~l~~~f~~~-------------------------G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 94 AHKLFIGGLPNYLND-----DQVKELLTSF-------------------------GPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp TTCEEEECCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred CCEEEEEcCCCcCCH-----HHHHHHHHhc-------------------------CCceEEEEEecCCCCCcceEEEEEe
Confidence 579999999986543 4567788855 44555554443 35699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
.+.++|.+|...|++..+.|+.++|.||
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999999999999986
No 159
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.15 E-value=6.3e-06 Score=64.79 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=59.3
Q ss_pred CcEEEecCCC--CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----------CCCe
Q psy258 39 KSLIITNLNP--DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----------SFRR 106 (238)
Q Consensus 39 ~TLiitnL~~--~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----------SF~R 106 (238)
.+|++.|+-. ++. +++.+.|+..|++||+ +.++...+ +.|.
T Consensus 21 ~vl~L~Nm~~~~el~--ddleedl~eef~k~G~-------------------------V~~v~I~~~~~~~~~~~~~~G~ 73 (118)
T 3ue2_A 21 TVMVLRNMVDPKDID--DDLEGEVTEECGKFGA-------------------------VNRVIIYQEKQGEEEDAEIIVK 73 (118)
T ss_dssp CEEEEESCSCGGGCC--TTHHHHHHHHHTTTSC-------------------------EEEEEEEEEEESSSTTCEEEEE
T ss_pred CEEEEECCCCHHHHH--HHHHHHHHHHHhccCC-------------------------EeEEEEeecCCCcccCCcceEE
Confidence 4899999853 332 4577888888885555 44444332 3378
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 107 MRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 107 iiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|.|.+.++|.+|...|+|..|.|+.+++.|+..
T Consensus 74 ~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 74 IFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred EEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 99999999999999999999999999999999754
No 160
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=5e-06 Score=63.17 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=57.9
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
.+|||.||+..+-+ +.|+.+|++||+|. .+...+ +.+-++|.|.
T Consensus 28 ~~l~V~nLp~~~te-----~~l~~~F~~~G~i~-------------------------~v~i~~~~~~g~~~g~afV~f~ 77 (116)
T 1x4b_A 28 RKLFIGGLSFETTE-----ESLRNYYEQWGKLT-------------------------DCVVMRDPASKRSRGFGFVTFS 77 (116)
T ss_dssp TEEEEECCTTCCCH-----HHHHHHHTSSCCCS-------------------------EEEEECCTTTSSCCSEEEEECS
T ss_pred CEEEEeCCCCCCCH-----HHHHHHHHhcCCEE-------------------------EEEEEECCCCCCcCceEEEEeC
Confidence 59999999986544 45678888776644 433333 3468999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
+.++|.+|... ++..|.|+.|+|.++++.
T Consensus 78 ~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 78 SMAEVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp SHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred CHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 99999999988 888999999999999873
No 161
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=8.1e-06 Score=59.86 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=55.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC-eEEEEeCCHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR-RMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~-RiiVVF~~~ea 116 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+..-+.-+ -++|.|.+.++
T Consensus 8 ~~~l~V~nl~~~~t~-----~~l~~~F~~~G~-------------------------v~~v~~~~~~g~~afV~f~~~~~ 57 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDS-----AQLSEYFLAFGP-------------------------VASVVMDKDKGVFAIVEMGDVGA 57 (94)
T ss_dssp CCEEEEECCCTTCCH-----HHHHHHGGGTSC-------------------------EEEEEECSSSCCEEEEEESSHHH
T ss_pred CCEEEEECCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEcCCCCcEEEEEECCHHH
Confidence 369999999976544 456788886655 44442222223 59999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+|.. |++..|.|..++|.++..
T Consensus 58 a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 58 REAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp HHHHHT-CSCCEETTEECCCBCSCC
T ss_pred HHHHHh-cCCeEECCEEEEEEECCc
Confidence 999999 999999999999988765
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.11 E-value=6.2e-06 Score=66.61 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=59.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..+|+|.||+..+-. +.|+.+|++| |.+..+...+. .|-++|.|
T Consensus 114 ~~~l~v~nl~~~~~~-----~~l~~~f~~~-------------------------G~v~~~~~~~~~~~~~~~g~afV~f 163 (198)
T 2yh0_A 114 AHKLFIGGLPNYLND-----DQVKELLTSF-------------------------GPLKAFNLVKDSATGLSKGYAFCEY 163 (198)
T ss_dssp CCEEEEECCCTTCCH-----HHHHHHHHTB-------------------------SCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHHc-------------------------CCccEEEEeecCCCCCcceEEEEEE
Confidence 469999999986543 4567788855 45555555443 35699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..+.|..++|.|+++
T Consensus 164 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 164 VDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp SSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999999999999999999999999987
No 163
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.11 E-value=1.1e-05 Score=68.23 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=60.3
Q ss_pred CcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHH
Q psy258 39 KSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAA 116 (238)
Q Consensus 39 ~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~ea 116 (238)
.||||.||+. .+-+ +.|+.+|++| |.+..+...+.- +-++|.|.+.++
T Consensus 35 ~~l~V~nLp~~~~te-----~~L~~~F~~~-------------------------G~i~~v~i~~~~~g~afV~F~~~~~ 84 (229)
T 2adc_A 35 SVLLVSNLNPERVTP-----QSLFILFGVY-------------------------GDVQRVKILFNKKENALVQMADGNQ 84 (229)
T ss_dssp SEEEEESCCTTTCCH-----HHHHHHHHHH-------------------------TCEEEEEECCTTSCCEEEEESCHHH
T ss_pred CEEEEeCCCcccCCH-----HHHHHHHHhC-------------------------CCeEEEEEEECCCCEEEEEECCHHH
Confidence 4999999997 5544 4566778855 556666666554 569999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
|.+|+..|++..|.|+.++|.|++..
T Consensus 85 A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 85 AQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred HHHHHHHhCCCeECCeEEEEEEecCc
Confidence 99999999999999999999999763
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.11 E-value=1.4e-05 Score=65.29 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=58.0
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
.||||.||+..+-+ +.|+.+|++| |.+..+..++ +.+-++|.|.
T Consensus 29 ~~l~V~nLp~~~t~-----~~l~~~f~~~-------------------------G~i~~v~i~~~~~~g~~~g~afV~f~ 78 (216)
T 2qfj_A 29 SRVYVGSIYYELGE-----DTIRQAFAPF-------------------------GPIKSIDMSWDSVTMKHKGFAFVEYE 78 (216)
T ss_dssp TEEEEECCCTTCCH-----HHHHHHHGGG-------------------------SCEEEEEECCC-CC-CCCSEEEEEES
T ss_pred CEEEEECCCCCCCH-----HHHHHHHHhC-------------------------CCEEEEEEeecCCCCccCceEEEEeC
Confidence 59999999987543 3566788855 5555555544 4577999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|+..+++..|.|+.++|.++..
T Consensus 79 ~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 79 VPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp SHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 99999999999999999999999988765
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.09 E-value=9.6e-06 Score=63.74 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=57.0
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
.+|+|.||+..+-. +.|+.+|++||+ +..+...+ +.|-++|.|.
T Consensus 88 ~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~~~i~~~~~~g~~~g~afV~f~ 137 (167)
T 2cjk_A 88 GKIFVGGIGPDVRP-----KEFEEFFSQWGT-------------------------IIDAQLMLDKDTGQSRGFGFVTYD 137 (167)
T ss_dssp EEEEEEEECTTCCH-----HHHHHHHHTTSC-------------------------CSEEECCCSSSSSTTSEEEEEEES
T ss_pred CeEEECCCCCCCCH-----HHHHHHHHhCcc-------------------------EEEEEEEEcCCCCccceEEEEEEC
Confidence 49999999986543 456788886655 44444433 3467999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|+. +++..+.|+.++|.||++
T Consensus 138 ~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 138 SADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp SHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 9999999998 899999999999999987
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.08 E-value=7.7e-06 Score=68.39 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=58.4
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEeCCH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNYESS 114 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF~~~ 114 (238)
.+|+|.||+..+-+ +.|+.+|++||+ +.....++ +.|-++|.|.+.
T Consensus 104 ~~l~v~nl~~~~t~-----~~l~~~F~~~G~-------------------------i~~~~i~~d~~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 104 GNIFIKNLDKSIDN-----KALYDTFSAFGN-------------------------ILSCKVVCDENGSKGYGFVHFETQ 153 (213)
T ss_dssp TEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEEETTEEEEEEEEEESSH
T ss_pred ccceECCcccccHH-----HHHHHHHhhcCC-------------------------eEEEEeeccCCCCceEEEEEeCCH
Confidence 58999999986543 456788886655 44444332 345699999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|.+|...|++..+.|+.|+|.||++
T Consensus 154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 154 EAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 999999999999999999999999976
No 167
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=1.3e-05 Score=60.98 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=57.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~ 112 (238)
..||||.|||..+-+ +.|+.+|++||+ +.++...+ +.|-++|.|.
T Consensus 11 ~~~lfV~~Lp~~~te-----~~L~~~F~~~G~-------------------------v~~v~i~~d~~g~~rG~aFV~F~ 60 (103)
T 1s79_A 11 NRSVYIKGFPTDATL-----DDIKEWLEDKGQ-------------------------VLNIQMRRTLHKAFKGSIFVVFD 60 (103)
T ss_dssp GGCEEEECCCTTCCH-----HHHHHHHHTSSC-------------------------EEEEEEECCCTTSCCCEEEEEES
T ss_pred CCEEEEECCCCCCCH-----HHHHHHHhhcCC-------------------------EEEEEEEECCCCCCccEEEEEEC
Confidence 369999999986543 456788886655 44444443 4567999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|..|.. +++..|.|+.++|.+++.
T Consensus 61 ~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 61 SIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 9999999999 899999999999998754
No 168
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.07 E-value=1e-05 Score=65.97 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=58.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||.+ .+..+...+ +.|-++|.|
T Consensus 55 ~~~lfVgnLp~~~te-----~~L~~~F~~~G~i-----------------------~v~~v~i~~d~~tg~skGfaFV~f 106 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTD-----QQLIQVIRSIGVY-----------------------DVVELKFAENRANGQSKGYAEVVV 106 (156)
T ss_dssp -CEEEEECCCTTCCH-----HHHHHHHHHTTCC-----------------------CEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHHHCCc-----------------------cEEEEEEEecCCCCccceEEEEEE
Confidence 359999999986544 3566788866510 344544432 234699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|...|++..|.|+.|+|.++..
T Consensus 107 ~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 107 ASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp SCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred CCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 999999999999999999999999999865
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.07 E-value=1.6e-05 Score=62.56 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=55.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVVF~ 112 (238)
..+|+|.||+..+-. +.|+.+|++|| .+..+...+. -|-++|.|.
T Consensus 95 ~~~l~v~nl~~~~t~-----~~l~~~F~~~G-------------------------~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 95 DRKLFIGMISKKCTE-----NDIRVMFSSFG-------------------------QIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp GSEEEEESCCTTCCH-----HHHHHHHGGGS-------------------------CEEEEEEEECTTSCEEEEEEEEES
T ss_pred CCeEEEcCCCCcCCH-----HHHHHHHHhCC-------------------------CEEEEEEEECCCCCEEEEEEEEEC
Confidence 459999999986544 45677888554 4555544443 234999999
Q ss_pred CHHHHHHHHHHhcCCccCC---cceEEEEeC
Q psy258 113 SSAAAAKARINLHQSVFAS---SKINVYFVQ 140 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g---~~lrIyFAq 140 (238)
+.++|.+|+..|++..+.+ .+|+|.||.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999999977663 799999973
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.06 E-value=9.9e-06 Score=63.11 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=57.5
Q ss_pred cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCCH
Q psy258 40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYESS 114 (238)
Q Consensus 40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~~ 114 (238)
||||.|||..+-+ +.|+.+|++|| ++.++...+ +.|-++|.|.+.
T Consensus 2 ~l~V~nlp~~~t~-----~~l~~~f~~~G-------------------------~i~~v~i~~~~~~~~~g~afV~f~~~ 51 (166)
T 3md3_A 2 VLYVGNLDKAITE-----DILKQYFQVGG-------------------------PIANIKIMIDKNNKNVNYAFVEYHQS 51 (166)
T ss_dssp EEEEEEEETTCCH-----HHHHHHHGGGS-------------------------CEEEEEEECCCC-CCEEEEEEEESSH
T ss_pred EEEECCCCCcCCH-----HHHHHHHHhcC-------------------------CeEEEEEEECCCCCCCCEEEEEeCCH
Confidence 7999999976544 35667888554 455544443 335699999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
++|.+|...+++..+.|+.+++.++..
T Consensus 52 ~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 52 HDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 999999999999999999999999876
No 171
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.06 E-value=1.9e-05 Score=62.74 Aligned_cols=78 Identities=23% Similarity=0.174 Sum_probs=59.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
..+|||.||+..+-+ ++|++.|...|..+| -.+.....-++.|-++|.|.+.++|
T Consensus 13 ~~~l~V~nLp~~~t~-~~l~~~f~~~g~~~~------------------------~~~~~~~~~~~~g~afV~f~~~~~a 67 (175)
T 1fje_B 13 PFNLFIGNLNPNKSV-AELKVAISELFAKND------------------------LAVVDVRTGTNRKFGYVDFESAEDL 67 (175)
T ss_dssp SEEEEEECCCTTSCH-HHHHHHHHHHHHHHT------------------------CCCCEEEEETTTTEEEEEESSHHHH
T ss_pred CcEEEEeCCCCCCCH-HHHHHHHHHhCCcce------------------------EEEEECCCCccccEEEEEECCHHHH
Confidence 569999999987654 455544444444222 1344556667888999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+|+ .|++..+.|+.++|.+++.
T Consensus 68 ~~A~-~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 68 EKAL-ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp HHHH-HGGGEEETTEEEEEECCCC
T ss_pred HHHH-hcCCCEeCCeEEEEecCCC
Confidence 9999 5999999999999999876
No 172
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.06 E-value=1.3e-05 Score=57.59 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=52.8
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+...+. .|-++|.|
T Consensus 11 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~f 60 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSK-----KDLKDYFTKFGE-------------------------VVDCTIKMDPNTGRSRGFGFILF 60 (87)
T ss_dssp TTEEEEECCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------EEEEEEeecCCCCccccEEEEEE
Confidence 569999999986633 456688886655 444444322 34699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFV 139 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFA 139 (238)
.+.++|.+|... ++..+.|+.++|.+|
T Consensus 61 ~~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 61 KDAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp SSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 999999999965 566699999998775
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.05 E-value=2.1e-05 Score=61.28 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=55.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..+|+|.||+..+-. +.|+.+|++|| .+..+...+. -|-++|.|
T Consensus 88 ~~~l~v~nl~~~~t~-----~~l~~~f~~~G-------------------------~i~~~~i~~~~~~g~~~g~afV~f 137 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQ-----KELEQLFSQYG-------------------------RIITSRILVDQVTGVSRGVGFIRF 137 (167)
T ss_dssp TCEEEEESCCTTCCH-----HHHHHHHGGGS-------------------------CEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCcEEECCCCCcCCH-----HHHHHHHHhcC-------------------------CEeEEEEEecCCCCCccceEEEEe
Confidence 368999999986543 45677888554 4555444432 35699999
Q ss_pred CCHHHHHHHHHHhcCCccCCc--ceEEEEe
Q psy258 112 ESSAAAAKARINLHQSVFASS--KINVYFV 139 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~--~lrIyFA 139 (238)
.+.++|.+|...|++..+.|. +++|.||
T Consensus 138 ~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 138 DKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp SSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999985 4888886
No 174
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=5.7e-06 Score=61.64 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=57.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+...+. .+-++|.|
T Consensus 16 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------v~~v~i~~~~~~g~~~g~afV~f 65 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQ-----ETLRSYFSQYGE-------------------------VVDCVIMKDKTTNQSRGFGFVKF 65 (105)
T ss_dssp SSEECCBSCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEECSSSCCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEeeCCCCCCcceEEEEEE
Confidence 579999999986544 456678886655 444444433 24699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|... ++..|.|+.|+|.++++
T Consensus 66 ~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 66 KDPNCVGTVLAS-RPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp SSTTHHHHHHHH-CSEEETTEEEBCCCSCC
T ss_pred CCHHHHHHHHHh-CCCeECCEEEEEEEccC
Confidence 999999999999 99999999999999876
No 175
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.02 E-value=1.4e-05 Score=68.90 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=61.6
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA 118 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~ 118 (238)
+||||.||+..+-+ +.|+.+|++| |.+..+...++.|-++|.|.+.++|.
T Consensus 23 ~~l~V~nLp~~~te-----~~l~~~F~~~-------------------------G~i~~v~i~~~kg~afV~f~~~~~A~ 72 (261)
T 3sde_A 23 CRLFVGNLPTDITE-----EDFKRLFERY-------------------------GEPSEVFINRDRGFGFIRLESRTLAE 72 (261)
T ss_dssp GEEEEESCCTTCCH-----HHHHHHTGGG-------------------------CCCSEEEEETTTTEEEEECSSHHHHH
T ss_pred CEEEEECCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEeCCCcEEEEEECCHHHHH
Confidence 48999999986643 4566778855 55666667788899999999999999
Q ss_pred HHHHHhcCCccCCcceEEEEeCC
Q psy258 119 KARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 119 ~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.|+..+++..+.|..++|.|+.+
T Consensus 73 ~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 73 IAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp HHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHcCCcEECCceeEeeeccc
Confidence 99999999999999999999876
No 176
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=2.1e-05 Score=58.27 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=55.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF 111 (238)
.++|||.||+..+-+ +.|+.+|++||+ +..+...+. .+-++|.|
T Consensus 15 ~~~l~v~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~f 64 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTE-----QDLKEYFSTFGE-------------------------VLMVQVKKDLKTGHSKGFGFVRF 64 (103)
T ss_dssp CCCEEEESCCSSCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECSSSCSEEEEEEEEE
T ss_pred CCEEEEEcCCCcCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCCccceEEEEE
Confidence 469999999986644 357788886655 444444332 35699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|... +..+.|..|+|.++.+
T Consensus 65 ~~~~~a~~A~~~--~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 65 TEYETQVKVMSQ--RHMIDGRWCDCKLPNS 92 (103)
T ss_dssp SSHHHHHHHHHS--CEEETTEEEEEECCCT
T ss_pred CCHHHHHHHHHc--CCeeCCeEEEEEecCC
Confidence 999999999984 5578899999999887
No 177
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=1.8e-05 Score=61.16 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=57.4
Q ss_pred cEEEecCCC-----CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258 40 SLIITNLNP-----DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS 114 (238)
Q Consensus 40 TLiitnL~~-----~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ 114 (238)
|+.|.-+++ ..|. ++|...|...|++||++. .+.|+. .|+||.|.+.
T Consensus 17 Tv~V~~~~~~~~~~~~fd-~~l~~~L~~~F~~~G~Vi-----------------------lvr~v~----d~~fVtF~d~ 68 (95)
T 1ufw_A 17 TVVVNLQSPTLEEKNEFP-EDLRTELMQTLGSYGTIV-----------------------LVRINQ----GQMLVTFADS 68 (95)
T ss_dssp EEEEEESSCCHHHHHSCC-HHHHHHHHHHHHHHSCCS-----------------------EEEEET----TEEEEECSCS
T ss_pred eEEEEecCCcccccccCC-HHHHHHHHHHHHHCCCEE-----------------------EEEEec----CcEEEEEcCh
Confidence 889888863 3666 899999999999887765 222222 4599999999
Q ss_pred HHHHHHHHHhcCCccCCcceEEEE
Q psy258 115 AAAAKARINLHQSVFASSKINVYF 138 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~~lrIyF 138 (238)
++|.+|.. |++..++|+.++|.+
T Consensus 69 ~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 69 HSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp HHHHHHHH-GGGSEETTEEEEEEC
T ss_pred HHHHHHHh-cCCeeeCCeEEEEec
Confidence 99999998 999999999999876
No 178
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.00 E-value=1.8e-05 Score=74.65 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=59.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF 111 (238)
.+||||.||+..+-. +.|+.+|++||+|. .+..+ ++.+=++|.|
T Consensus 102 ~~~lfV~nL~~~~te-----~~L~~~F~~~G~I~-------------------------~v~i~~d~~tg~~kG~aFV~F 151 (437)
T 3pgw_S 102 FKTLFVARVNYDTTE-----SKLRREFEVYGPIK-------------------------RIHMVYSKRSGKPRGYAFIEY 151 (437)
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHHcCCee-------------------------EEEeeccCCCCCccceEEEee
Confidence 469999999987644 45678888776644 33332 2356799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|..|...|++..|.|..|+|.|++.
T Consensus 152 ~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 152 EHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred ccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 999999999999999999999999999987
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.97 E-value=2.2e-05 Score=67.56 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=60.1
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~ 112 (238)
.++|+|.||+..+-. .+.|+.+|++||+ +..+...+ +-|.++|.|.
T Consensus 184 ~~~l~v~nlp~~~~~----~~~l~~~f~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f~ 234 (284)
T 3smz_A 184 SRCLCVDRLPPGFND----VDALCRALSAVHS-------------------------PTFCQLACGQDGQLKGFAVLEYE 234 (284)
T ss_dssp CSEEEEECCCTTCCC----HHHHHHHTCSSSC-------------------------CSEEEEEECSSCCEEEEEEEECS
T ss_pred ccEEEEecCCcccCC----HHHHHHHhhCCCC-------------------------eEEEEEEECCCCCcccEEEEEeC
Confidence 469999999986533 2456778886655 44444433 2467999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
+.++|.+|...|++..+.|+.++|.|+++.
T Consensus 235 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 235 TAEMAEEAQQQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred CHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence 999999999999999999999999999873
No 180
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.96 E-value=1.9e-05 Score=60.87 Aligned_cols=76 Identities=16% Similarity=0.097 Sum_probs=56.9
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCce--EEEecC---CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPK--SFQYLK---SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv--~fv~Lk---SF~RiiVVF~ 112 (238)
..||+|.||+..+-+ +.|+.+|++||.+- .+. .+..=+ +.|-++|.|.
T Consensus 17 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~~~----------------------~v~~v~i~~~~~g~~~G~afV~F~ 69 (118)
T 2db1_A 17 GYVVKLRGLPWSCSI-----EDVQNFLSDCTIHD----------------------GVAGVHFIYTREGRQSGEAFVELE 69 (118)
T ss_dssp CCEEEEESCCTTCCH-----HHHHHHTTTSCBTT----------------------GGGGEEEEECSSSCEEEEEEEEBS
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHHcCCcc----------------------CceeEEEEECCCCCCCeEEEEEEC
Confidence 469999999986644 45778888776621 022 222222 2345999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|.. +++..+.|+.++|.+++.
T Consensus 70 ~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 70 SEDDVKLALK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp SHHHHHHHGG-GTTEEETTEEEEEEEECH
T ss_pred CHHHHHHHHh-cCCCeECCeEEEEEECCH
Confidence 9999999999 999999999999999865
No 181
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.94 E-value=2e-05 Score=65.82 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=58.1
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
.||||.||+..+-+ +.|+.+|++|| ++.++...+ +.|-++|.|.
T Consensus 16 ~tlfVgnLp~~~te-----~~L~~~F~~~G-------------------------~I~~v~i~~d~~tg~~~G~afV~F~ 65 (213)
T 4f02_A 16 ASLYVGDLHPDVTE-----AMLYEKFSPAG-------------------------PILSIRVCRDMITRRSLGYAYVNFQ 65 (213)
T ss_dssp CEEEEESCCTTCCH-----HHHHHHHGGGS-------------------------CEEEEEEEECTTTCCEEEEEEEEES
T ss_pred cEEEEeCCCCCCCH-----HHHHHHHHhhC-------------------------CEEEEEEecccCCCCccccccceeC
Confidence 48999999986544 45677888554 455554443 3456999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|...+++..+.|+.+++.++..
T Consensus 66 ~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 66 QPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 99999999999999999999999999865
No 182
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.88 E-value=5.7e-06 Score=61.33 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~ 112 (238)
+.||||.||+..+-+ +.|+.+|++||+ +..+...+ +.|-++|.|.
T Consensus 9 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f~ 58 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDE-----TEIRSFFARYGS-------------------------VKEVKIITDRTGVSKGYGFVSFY 58 (102)
T ss_dssp EEEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTSCEEEEEEEEES
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------eEEEEEEECCCCCccceEEEEEC
Confidence 469999999976544 356778886655 44444443 3467999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQPM 142 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~ 142 (238)
+.++|..|.. ++..++|..++|.++..+
T Consensus 59 ~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 59 NDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp SCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred CHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 9999999998 888899999999998763
No 183
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=3.6e-05 Score=58.63 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=57.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCC-cchhhhhhhHHHHHHHHhhhhcCCceEEEe---cCCCCeEEEEeCC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKP-KSFQYLKNDALKEQIETLLSQFGKPKSFQY---LKSFRRMRVNYES 113 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~---LkSF~RiiVVF~~ 113 (238)
..||||.||+..+-+ +.|+.+|++||.+ . -+.+.. -++.|-++|.|.+
T Consensus 15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~g~v~~-----------------------~v~i~~d~~g~~~G~afV~F~~ 66 (114)
T 2cpy_A 15 KVCAHITNIPFSITK-----MDVLQFLEGIPVDEN-----------------------AVHVLVDNNGQGLGQALVQFKN 66 (114)
T ss_dssp CCEEEEESCCTTSCH-----HHHHHHTTTSCCCST-----------------------TEEECCCTTSSCSSCEEEECSS
T ss_pred ccEEEEeCcCCcCCH-----HHHHHHHHhCCCcCC-----------------------eEEEEECCCCCcceEEEEEECC
Confidence 469999999986544 3577888866654 2 122222 2355779999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.++|.+|... ++..|.|..|+|.++..
T Consensus 67 ~~~a~~Al~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 67 EDDARKSERL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp HHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred HHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence 9999999877 99999999999999876
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.86 E-value=4.4e-05 Score=65.68 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=60.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
.++|||.|||..+-+ +.|+.+|+ .|| +.....-++-|-++|.|.+.++|
T Consensus 22 ~~~l~V~nLp~~~te-----~~l~~~F~-------------------------~~G-i~~~~~~~~~g~afV~f~~~~~A 70 (284)
T 3smz_A 22 RRKILIRGLPGDVTN-----QEVHDLLS-------------------------DYE-LKYCFVDKYKGTAFVTLLNGEQA 70 (284)
T ss_dssp CCEEEEECCCTTCCH-----HHHHHHTT-------------------------TSC-EEEEEEETTTTEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHH-------------------------HcC-CEEEEEecCCCEEEEEeCCHHHH
Confidence 369999999987644 34667788 455 55666678889999999999999
Q ss_pred HHHHHHhcCCccCCcceEEEEeCC
Q psy258 118 AKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 118 ~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
..|...|++..+.|+.++|.++..
T Consensus 71 ~~A~~~l~~~~~~g~~i~v~~~~~ 94 (284)
T 3smz_A 71 EAAINAFHQSRLRERELSVQLQPT 94 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHcCCCeeCCeEEEEEecCC
Confidence 999999999999999999998654
No 185
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.84 E-value=5.1e-05 Score=60.87 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=57.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCC---CcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGK---PKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF 111 (238)
..+|+|.||+..+-+ +.|+.+|++||+ +. -+.+..= ++.|-++|.|
T Consensus 44 ~~~lfVgnLp~~~te-----~dL~~~F~~~G~v~~v~-----------------------~v~i~~d~~g~srG~aFV~F 95 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSV-----EDVQNFLSDCTIHDGAA-----------------------GVHFIYTREGRQSGEAFVEL 95 (136)
T ss_dssp TCEEEEESCCTTCCH-----HHHHHHTTTCCCSSSST-----------------------TEEEEECSSSCEEEEEEEEC
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHHhCCcCcee-----------------------EEEEEECCCCCCCeEEEEEE
Confidence 469999999986544 456788998877 22 2233322 2334599999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|.. +++..+.|+.++|..+..
T Consensus 96 ~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 96 GSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp SSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred CCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 99999999999 999999999999999754
No 186
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.83 E-value=5.2e-05 Score=59.59 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=54.9
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec--------CCCCeEEEE
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL--------KSFRRMRVN 110 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L--------kSF~RiiVV 110 (238)
.||||.|||..+-+ +.|+.+|++|| ++.++..+ ++.|-++|.
T Consensus 4 ~~l~V~nLp~~~te-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~~~~~~~~g~afV~ 53 (175)
T 3nmr_A 4 IKMFVGQVPRTWSE-----KDLRELFEQYG-------------------------AVYEINVLRDRSQNPPQSKGCCFVT 53 (175)
T ss_dssp EEEEEESCCTTCCH-----HHHHHHHHTTS-------------------------CEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred eEEEEeCCCCCCCH-----HHHHHHHHhCC-------------------------CEEEEEEEecCCCCCCCcceEEEEE
Confidence 59999999986544 35667888554 45555444 345679999
Q ss_pred eCCHHHHHHHHHHhcCCccC---CcceEEEEeCC
Q psy258 111 YESSAAAAKARINLHQSVFA---SSKINVYFVQP 141 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~---g~~lrIyFAq~ 141 (238)
|.+.++|.+|+..|++..+. +..+++.+++.
T Consensus 54 f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~ 87 (175)
T 3nmr_A 54 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADS 87 (175)
T ss_dssp ESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred ECCHHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence 99999999999999997765 45677777665
No 187
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.81 E-value=6.7e-05 Score=56.47 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-----CCCCeEEEE
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-----KSFRRMRVN 110 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-----kSF~RiiVV 110 (238)
+-..+|+|.||+..+-+ +.|+.+|++||.+ +.+..+..+ ++-|-++|.
T Consensus 9 ~~~~~l~V~nLp~~~te-----~~l~~~F~~~g~~----------------------~~v~~v~i~~~~~g~~~G~afV~ 61 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTM-----EDVLNFFSDCRIR----------------------NGENGIHFLLNRDGKRRGDALIE 61 (107)
T ss_dssp SSCCEEEEECCCSSCCS-----HHHHHHTTTSCBT----------------------TTTTTEECCCCTTSTTCSEEEEE
T ss_pred CCccEEEEeCCCCCCCH-----HHHHHHHHhcCCc----------------------CCcceEEEEECCCCCEeeEEEEE
Confidence 33579999999987766 3456788877652 113333332 344679999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+.++|.+|.. +++..+.|+.++|.++..
T Consensus 62 F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 62 MESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp BSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred ECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 999999999999 999999999999999765
No 188
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=0.00011 Score=55.09 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=56.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceE-EEec-----CCCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKS-FQYL-----KSFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~-fv~L-----kSF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||. +.. +... ++.|-++|.|
T Consensus 15 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~-------------------------v~~~v~i~~~~~g~~~G~afV~F 64 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSK-----EEIVQFFSGLEI-------------------------VPNGMTLPVDFQGRSTGEAFVQF 64 (104)
T ss_dssp CCEEEEESCCTTCCH-----HHHHHHTTTCCE-------------------------EEEEEECCBCSSSCBCSEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------cceeEEEEECCCCCcceEEEEEE
Confidence 469999999976544 456788886654 433 2222 3456799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|... ++..+.|+.++|..+..
T Consensus 65 ~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 65 ASQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp SSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred CCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 999999999998 89999999999999865
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.75 E-value=5.4e-05 Score=65.37 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=58.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-------CCeEEEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-------FRRMRVN 110 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-------F~RiiVV 110 (238)
..+|+|.||+..+.. .+.|+.+|++|| .+..+...+. -|-++|.
T Consensus 210 ~~~l~v~nlp~~~~t----~~~l~~~F~~~G-------------------------~v~~v~i~~~~~~tg~~~g~afV~ 260 (292)
T 2ghp_A 210 GREIMIRNLSTELLD----ENLLRESFEGFG-------------------------SIEKINIPAGQKEHSFNNCCAFMV 260 (292)
T ss_dssp TTEEEEEEECTTTCC----HHHHHHHHGGGS-------------------------CEEEEECCSCCC---CCCEEEEEE
T ss_pred CceEEEECCCcccCC----HHHHHHHHhccC-------------------------CeeEEEEEecCCcCCCCceEEEEE
Confidence 469999999986222 245677888554 4555554442 3459999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+.++|.+|+ .|++..|.|+.++|.||++
T Consensus 261 F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 261 FENKDSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp ESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred eCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 99999999999 9999999999999999986
No 190
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.75 E-value=0.00012 Score=53.79 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=50.5
Q ss_pred CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-CCCCeEEEEeCCH
Q psy258 36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-KSFRRMRVNYESS 114 (238)
Q Consensus 36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-kSF~RiiVVF~~~ 114 (238)
.-++||||.||+..+-+ +.|+.+|++||+ +.++... ++.|=++|.|.+.
T Consensus 9 ~~~~~l~V~~Lp~~~te-----~~L~~~F~~~G~-------------------------i~~v~i~~~srGfaFV~F~~~ 58 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTA-----EELQQFFCQYGE-------------------------VVDVFIPKPFRAFAFVTFADD 58 (89)
T ss_dssp --CCEEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEECCSSCCSEEEEEESCH
T ss_pred CCCCEEEEeCCCCCCCH-----HHHHHHHhccCC-------------------------EEEEEEeeCCCCEEEEEECCH
Confidence 34679999999987654 456788886655 4444433 3567899999999
Q ss_pred HHHHHHHHHhcCCc--cCCcceEEEEeCC
Q psy258 115 AAAAKARINLHQSV--FASSKINVYFVQP 141 (238)
Q Consensus 115 eaA~~Ar~~L~~~~--f~g~~lrIyFAq~ 141 (238)
++|.+ +++.. +.|..++|.+|++
T Consensus 59 ~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 59 KVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp HHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred HHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 99983 44544 4577888888876
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.73 E-value=7.4e-05 Score=60.10 Aligned_cols=74 Identities=12% Similarity=0.193 Sum_probs=55.3
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~ 112 (238)
.+|+|.||+..+-. +.|+.+|++| |.+..+..++. .|-++|.|.
T Consensus 105 ~~l~V~nLp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~g~~~g~afV~F~ 154 (196)
T 1l3k_A 105 KKIFVGGIKEDTEE-----HHLRDYFEQY-------------------------GKIEVIEIMTDRGSGKKRGFAFVTFD 154 (196)
T ss_dssp SEEEEECCTTTCCH-----HHHHHHHTTT-------------------------SCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred ceEEEeCCCCCCCH-----HHHHHHHhcC-------------------------CCeEEEEEeecCCCCCccceEEEEEC
Confidence 69999999976543 4566788855 44555544432 345999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQPMT 143 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t 143 (238)
+.++|.+|... ++..|.|..++|.||.+..
T Consensus 155 ~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 155 DHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp SHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred CHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 99999999987 6888999999999998743
No 192
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.72 E-value=7.1e-05 Score=60.20 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=56.3
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF 111 (238)
..+|||.||+..+-+ +.|+.+|++||+ +..+...+ +.|-++|.|
T Consensus 13 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~f 62 (196)
T 1l3k_A 13 LRKLFIGGLSFETTD-----ESLRSHFEQWGT-------------------------LTDCVVMRDPNTKRSRGFGFVTY 62 (196)
T ss_dssp GGEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------EEEEEEEEcCCCCCccceEEEEe
Confidence 359999999986644 356678885554 54444443 235799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|+.. ++..+.|..+++.++..
T Consensus 63 ~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 63 ATVEEVDAAMNA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp SSHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred CCHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence 999999999977 77889999999999876
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.67 E-value=0.00013 Score=62.91 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=58.4
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcC-CCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEe
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFG-KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNY 111 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF 111 (238)
..+|+|.||+..+-. +.|+.+|++|| ++ ..+...+ +-|-++|.|
T Consensus 117 ~~~l~v~nlp~~~t~-----~~l~~~f~~~G~~i-------------------------~~v~i~~~~~~~~~g~afV~f 166 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQ-----RNIRDLLQDINVVA-------------------------LSIRLPSLRFNTSRRFAYIDV 166 (292)
T ss_dssp SCEEEEECCCTTCCH-----HHHHHHHHHTTCCC-------------------------CEEECC-------CCEEEEEC
T ss_pred CCEEEEECCCCCCCH-----HHHHHHHHHhCCCe-------------------------EEEEEEeCCCCCcceEEEEEE
Confidence 469999999986533 45778888666 54 3333332 456799999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|+..|++..+.|..++|.|+.+
T Consensus 167 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 167 TSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 999999999999999999999999999876
No 194
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=4.6e-05 Score=60.13 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=55.8
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCc--eEEEecC---CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKP--KSFQYLK---SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i--v~fv~Lk---SF~RiiVVF~ 112 (238)
+.+|+|.||+-.+-+ +.|+.+|++||+|. +.+ +.+..=+ +.|=++|.|.
T Consensus 23 ~~~v~V~nLp~~~te-----~dl~~~F~~~g~v~---------------------g~v~~v~i~~d~~gr~~G~aFV~F~ 76 (123)
T 2dha_A 23 QVIVRMRGLPFTATA-----EEVVAFFGQHCPIT---------------------GGKEGILFVTYPDGRPTGDAFVLFA 76 (123)
T ss_dssp CCEEEECSCCTTCCH-----HHHHHHHHTTSCCT---------------------TGGGGEEEEECTTSCEEEEEEECCS
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHHhhCCcc---------------------CCcceEEEEECCCCCEeeEEEEEEC
Confidence 579999999976544 45678899787642 112 2232222 2345999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|... ++..+.+..++|..+..
T Consensus 77 ~~~~A~~Al~~-~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 77 CEEYAQNALRK-HKDLLGKRYIELFRSTA 104 (123)
T ss_dssp SHHHHHHHHTT-TTEESSSCEECCEEECH
T ss_pred CHHHHHHHHHh-CCCeeCCeEEEEEECCH
Confidence 99999999986 88888888898888754
No 195
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=5e-05 Score=54.78 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-CCCeEEEEeCCHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-SFRRMRVNYESSAA 116 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-SF~RiiVVF~~~ea 116 (238)
.+||||.||+..+-+ +.|+.+|++||+ +..+...+ +.+-++|.|.+.++
T Consensus 5 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~afV~f~~~~~ 54 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTE-----DELREFFSQYGD-------------------------VMDVFIPKPFRAFAFVTFADDQI 54 (88)
T ss_dssp CCEEEEESCCSSSCH-----HHHHHHSTTTSC-------------------------CCEEECCSSCCSCCEEECSCHHH
T ss_pred CcEEEEeCCCCCCCH-----HHHHHHHHHcCC-------------------------eeEEEEecCCCCEEEEEECCHHH
Confidence 579999999987554 456688886655 44444443 45679999999999
Q ss_pred HHHHHHHhcCCccCCcceEEEEeCC
Q psy258 117 AAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+|.. ....+.+..++|.++++
T Consensus 55 a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 55 AQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp HHHTTT--CEEEETTEEEEEECCCC
T ss_pred HHHHhc--CCceeCCEEEEEEecCC
Confidence 975321 12345777888888876
No 196
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=0.0001 Score=55.52 Aligned_cols=73 Identities=10% Similarity=0.130 Sum_probs=54.5
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEe
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNY 111 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF 111 (238)
-+.+|+|.||+..+-+ +.|+++|++|| ++.+..++ +.+-++|.|
T Consensus 14 ~~~~l~V~nLp~~~te-----~~l~~~F~~~G--------------------------~~~v~i~~d~~g~~~G~afV~F 62 (102)
T 1wez_A 14 TGHCVHMRGLPYRATE-----NDIYNFFSPLN--------------------------PMRVHIEIGPDGRVTGEADVEF 62 (102)
T ss_dssp SSCEEEEESCCTTCCH-----HHHHHSSCSCC--------------------------CSEEEEEESSSSCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCH-----HHHHHHHHHcC--------------------------ceEEEEEECCCCCEeeEEEEEE
Confidence 3569999999976544 45667888664 22333322 234599999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|. .+++..+.++.++|..+..
T Consensus 63 ~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 63 ATHEDAVAAM-AKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSSHHHHHHH-TTSSCCSSSSCCEEEEECC
T ss_pred CCHHHHHHHH-HhCCCeECCcEEEEEECCC
Confidence 9999999999 5799999999999998876
No 197
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.60 E-value=0.00023 Score=59.65 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=80.4
Q ss_pred cccccCCCCCCCcEEEecCC-----CCCCCChHHHHHHHHHHhhcCCC---c----chhhhhh-hHHHHHHHHhhhhcCC
Q psy258 28 LDDLINDEQLPKSLIITNLN-----PDLFKDDALKEQIETLLSQFGKP---K----SFQYLKN-DALKEQIETLLSQFGK 94 (238)
Q Consensus 28 ~~~~~~~~~~p~TLiitnL~-----~~vf~~~~l~~~l~~lF~~~g~~---~----~~~~~~~-~~~~~~~~~~~~~~~~ 94 (238)
+-+-..-..+|+.+++.|=. ......+.+++.|+.+...-... + .+.+..+ +.+.+.+++.+++||.
T Consensus 76 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~ 155 (222)
T 3dxb_A 76 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGA 155 (222)
T ss_dssp TGGGGTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHHHSCCSCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSC
T ss_pred HHHHcCCCcCCEEEEEECCeEEEEeccccChHHHHHHHHhhccccccccccchhhcCCCHHHHHHHHHHHHHHHHHccCC
Confidence 33344556778777765421 11233456777777766532221 1 2223333 5677788888899999
Q ss_pred ceEEEec----------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 95 PKSFQYL----------KSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 95 iv~fv~L----------kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++... ++.|.++|.|.+.++|.+|...|+|..|.|+.+++.|...
T Consensus 156 v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 156 VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred eEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 9998876 5678999999999999999999999999999999999753
No 198
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=0.00023 Score=54.04 Aligned_cols=70 Identities=9% Similarity=0.091 Sum_probs=50.5
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---------CCCCeEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---------KSFRRMR 108 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---------kSF~Rii 108 (238)
..+|||.||+..+-+ +.|+.+|++||+ +. ...+ ++.|-++
T Consensus 8 ~~~lfVgnLp~~~te-----~~L~~~F~~~G~-------------------------i~-~~~~~~~~~~~~g~~~G~aF 56 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDE-----DEITASFRRFGP-------------------------LV-VDWPHKAESKSYFPPKGYAF 56 (114)
T ss_dssp CCCEEEECCCTTCCH-----HHHHHHTTTTCC-------------------------CC-EECTTSSSSCCCSCTTSEEE
T ss_pred CCEEEEcCCCCCCCH-----HHHHHHHHhcCC-------------------------EE-EEEeecCCCCCCCCcccEEE
Confidence 579999999986644 456788886655 44 2222 3456799
Q ss_pred EEeCCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258 109 VNYESSAAAAKARINLHQSVFASSKINVYFVQ 140 (238)
Q Consensus 109 VVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq 140 (238)
|.|.+.++|.+|...|++ ++|+.+.+..+.
T Consensus 57 V~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~~ 86 (114)
T 2dnl_A 57 LLFQEESSVQALIDACLE--EDGKLYLCVSSP 86 (114)
T ss_dssp ECCSSHHHHHHHHHHSEE--ETTEEEEEECCS
T ss_pred EEECCHHHHHHHHHhhhh--cCCcEEEeccCC
Confidence 999999999999999854 667666555433
No 199
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.50 E-value=0.00022 Score=60.04 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=50.0
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC----CCeEEEEeCCH
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS----FRRMRVNYESS 114 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS----F~RiiVVF~~~ 114 (238)
++|+|.||+..+-. +.|+.+|++||.+. ...+..++. -+-++|.|.+.
T Consensus 124 ~~l~v~NLp~~~t~-----~~L~~~F~~~G~v~-----------------------~~~v~~~~~~~~~~g~gfV~f~~~ 175 (205)
T 3tyt_A 124 NVLHFFNAPLEVTE-----ENFFEICDELGVKR-----------------------PTSVKVFSGKSERSSSGLLEWDSK 175 (205)
T ss_dssp SEEEEEEECTTCCH-----HHHHHHHHHHTCCC-----------------------CSEEEECSCCSSSSEEEEEECSSH
T ss_pred ceEEEeCCCCCCCH-----HHHHHHHHhcCCcc-----------------------eEEEEEEcCCCCCceEEEEEeCCH
Confidence 48999999986543 45678888776641 144444443 25799999999
Q ss_pred HHHHHHHHHhcCCccCCc
Q psy258 115 AAAAKARINLHQSVFASS 132 (238)
Q Consensus 115 eaA~~Ar~~L~~~~f~g~ 132 (238)
++|.+|...|++..+.|.
T Consensus 176 ~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 176 SDALETLGFLNHYQMKNP 193 (205)
T ss_dssp HHHHHHHHHHTTCEECCS
T ss_pred HHHHHHHHHhCCCCccCC
Confidence 999999999999988774
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.00047 Score=52.53 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcce
Q psy258 56 LKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-KSFRRMRVNYESSAAAAKARINLHQSVFASSKI 134 (238)
Q Consensus 56 l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~l 134 (238)
-.+.|+.+|++||+| ..+... ++.|-++|.|.+.++|..|...+++ +.+++|
T Consensus 30 te~~L~~~F~~~G~V-------------------------~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEV-------------------------LNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp CHHHHHHHHHTTSCE-------------------------EEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred CHHHHHHHHHhcCCE-------------------------EEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 356788889866554 444433 5667899999999999999998655 567899
Q ss_pred EEEEeCC
Q psy258 135 NVYFVQP 141 (238)
Q Consensus 135 rIyFAq~ 141 (238)
+|.|++.
T Consensus 83 ~V~~a~~ 89 (100)
T 2d9o_A 83 KISWLEG 89 (100)
T ss_dssp EEECSSC
T ss_pred EEEEccC
Confidence 9999887
No 201
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.38 E-value=0.00062 Score=52.33 Aligned_cols=71 Identities=8% Similarity=0.105 Sum_probs=54.1
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYES 113 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~ 113 (238)
.+|+|.||+..+-+ +.|+.+|++| .+..+..++ +.|=++|.|.+
T Consensus 17 ~~v~V~nLp~~~te-----~dl~~~F~~~--------------------------~v~~v~i~~d~~g~~~G~afV~F~~ 65 (109)
T 2dnn_A 17 LYVSVHGMPFSAME-----NDVRDFFHGL--------------------------RVDAVHLLKDHVGRNNGNGLVKFLS 65 (109)
T ss_dssp HEEEEECCCSSCCH-----HHHHHHTTTS--------------------------CCCEEEECCCTTCCCCSEEEEECSS
T ss_pred CEEEEeCCCCCCCH-----HHHHHHhccC--------------------------CeeEEEEEECCCCCCCeEEEEEECC
Confidence 39999999976544 3456777744 344444442 44669999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.++|.+|. .+++..+.|+.++|..+..
T Consensus 66 ~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 66 PQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred HHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 99999998 7899999999999987653
No 202
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.36 E-value=0.00041 Score=54.24 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=52.8
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE 112 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~ 112 (238)
.+|||.|||..+-+ +.|+.+|++|| .+.++...+ +.|-++|.|.
T Consensus 4 ~~l~v~nLp~~~t~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~~g~~~g~afV~f~ 53 (167)
T 2cjk_A 4 CKMFIGGLNWDTTE-----DNLREYFGKYG-------------------------TVTDLKIMKDPATGRSRGFGFLSFE 53 (167)
T ss_dssp GEEEECSCCTTCCH-----HHHHHHHTTTC-------------------------CEEEEECCCCTTTSSCCSCEEEEES
T ss_pred cEEEEeCCCCCCCH-----HHHHHHHHhCC-------------------------CEEEEEEEECCCCCCccceEEEEEc
Confidence 69999999987644 35667888555 455555443 3467999999
Q ss_pred CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
+.++|.+|... +..+.|+.+++.++.+
T Consensus 54 ~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 54 KPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp STHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred cHHHHHHHHhc--ccccCCeEcccccccc
Confidence 99999999985 4567888888877654
No 203
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.34 E-value=0.0002 Score=57.61 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=55.9
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-----CCCCeEEEEe
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-----KSFRRMRVNY 111 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-----kSF~RiiVVF 111 (238)
-..+|+|.||+..+-+ +.|+++|++|| ++.+..+ ++.+=++|.|
T Consensus 45 ~~~~lfV~nLp~~~te-----~dL~~~F~~~G--------------------------i~~v~i~~d~~g~srGfaFV~F 93 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATE-----NDIYNFFSPLN--------------------------PVRVHIEIGPDGRVTGEADVEF 93 (139)
T ss_dssp CCCCEECCSCCTTCCH-----HHHHHHHCSCC--------------------------CSEEECCCSSSSCSSCCCEEEC
T ss_pred CCCEEEEeCCCCCCCH-----HHHHHHHHhcC--------------------------CeEEEEEECCCCCCceEEEEEe
Confidence 3469999999986544 45678888664 3333333 2345699999
Q ss_pred CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 112 ESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.+.++|.+|. .+++..+.++.++|..+..
T Consensus 94 ~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 94 ATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp SHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 9999999999 8899999999999988776
No 204
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.33 E-value=0.00031 Score=58.80 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=54.1
Q ss_pred CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCC
Q psy258 39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYES 113 (238)
Q Consensus 39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~ 113 (238)
.||||.|||..+- .+.|+.+|++||+| ..+...+ +.|-++|.|.+
T Consensus 110 ~~l~V~nLp~~~t-----~~~L~~~F~~~G~v-------------------------~~v~i~~~~~~~~kG~aFVeF~~ 159 (193)
T 2voo_A 110 RSVYIKGFPTDAT-----LDDIKEWLEDKGQV-------------------------LNIQMRRTLHKAFKGSIFVVFDS 159 (193)
T ss_dssp TEEEEECCCTTCC-----HHHHHHHHTTSCCE-------------------------EEEEEEECTTCCEEEEEEEEESS
T ss_pred CEEEecCCCCcCC-----HHHHHHHHhcCCCE-------------------------EEEEEEECCCCCcccEEEEEECC
Confidence 5899999997543 35677889977654 3333332 33569999999
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 114 SAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
.++|..|...+.. .|.|+.++|.+++.
T Consensus 160 ~e~A~~A~~~~~~-~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 160 IESAKKFVETPGQ-KYKETDLLILFKDD 186 (193)
T ss_dssp HHHHHHHHHCTTC-EETTEECEEEETTT
T ss_pred HHHHHHHHHhCCC-eECCEEEEEEEhHH
Confidence 9999999976654 79999999988654
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.29 E-value=0.00082 Score=62.01 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=55.5
Q ss_pred CCC-CcEEEecCC--CCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeC
Q psy258 36 QLP-KSLIITNLN--PDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYE 112 (238)
Q Consensus 36 ~~p-~TLiitnL~--~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~ 112 (238)
.-| ++|||.|+. -.+- .+.|+++|++| |.+.++...++.+-++|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~t-----e~~L~~~F~~~-------------------------G~V~~v~~~~~kgfaFV~f~ 64 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVS-----RNQLLPVLEKC-------------------------GLVDALLMPPNKPYSFARYR 64 (345)
T ss_dssp SSCCSEEEEETCSGGGTCC-----HHHHHHHHHTT-------------------------SCEEEEECCTTCSEEEEEES
T ss_pred CCCCCEEEEEcCCCCCCCC-----HHHHHHHHHhc-------------------------CCeEEEEEeCCCCEEEEEEC
Confidence 334 499999964 3333 34567788855 55556666667789999999
Q ss_pred CHHHHHHHHHHhcCCccC---Cc--ceEEEEeCC
Q psy258 113 SSAAAAKARINLHQSVFA---SS--KINVYFVQP 141 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~~f~---g~--~lrIyFAq~ 141 (238)
+.++|++|...|+|..+. |. .+.+.|++.
T Consensus 65 ~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 65 TTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 98 (345)
T ss_dssp SHHHHHHHHHHTTTCEEECTTSCEEECEEEECSS
T ss_pred CHHHHHHHHHHhCCCccccccCCceEEEEEEeec
Confidence 999999999999998653 33 467777754
No 206
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.20 E-value=0.00067 Score=58.30 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=55.2
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE 112 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~ 112 (238)
.++|+|.||+..+-. +.|+.+|++||+ +..+..++ +-|-++|.|.
T Consensus 96 ~~~l~v~nl~~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f~ 145 (261)
T 3sde_A 96 GAALTVKNLSPVVSN-----ELLEQAFSQFGP-------------------------VEKAVVVVDDRGRATGKGFVEFA 145 (261)
T ss_dssp SSEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEEETTSCEEEEEEEEES
T ss_pred CCcccccCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEeeeCCCCCcCcEEEEEeC
Confidence 469999999976533 457788886655 44444432 2456999999
Q ss_pred CHHHHHHHHHHhcCC-ccC---CcceEEEEeCCC
Q psy258 113 SSAAAAKARINLHQS-VFA---SSKINVYFVQPM 142 (238)
Q Consensus 113 ~~eaA~~Ar~~L~~~-~f~---g~~lrIyFAq~~ 142 (238)
+.++|.+|...|++. .+. +.+++|.++...
T Consensus 146 ~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 146 AKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999999999553 333 788999998763
No 207
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00019 Score=58.69 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=51.6
Q ss_pred CCCcEEEecC----CCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCe
Q psy258 37 LPKSLIITNL----NPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRR 106 (238)
Q Consensus 37 ~p~TLiitnL----~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~R 106 (238)
+|+.|||+|| +..+=+ ..|+++|++||.|. ++... ++.|=
T Consensus 1 mp~kI~VgnL~~~~~~~tte-----~~Lk~~Fs~fGeV~-------------------------~~~li~Dp~Tg~slGf 50 (136)
T 2j8a_A 1 MSCEIVVYPAQDSTTTNIQD-----ISIKNYFKKYGEIS-------------------------HFEAFNDPNSALPLHV 50 (136)
T ss_dssp -CCEEEEEESSSSCCCCCCH-----HHHHHHHHTTSCCS-------------------------EEEEEECTTTCCEEEE
T ss_pred CCcEEEEeCCCCCCCCCCCH-----HHHHHHHHhcCCeE-------------------------EEEEEecCCCCceeeE
Confidence 4789999999 654433 45778899676654 33332 35667
Q ss_pred EEEEeCC-----HHH---HHHHHH--HhcCCccCCcceEEEEeCC
Q psy258 107 MRVNYES-----SAA---AAKARI--NLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 107 iiVVF~~-----~ea---A~~Ar~--~L~~~~f~g~~lrIyFAq~ 141 (238)
.+|.|.+ .++ |.+|.. .+++..+.|..+||.+-+.
T Consensus 51 gfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 51 YLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp EEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred EEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 9999996 333 566655 5788889999999998543
No 208
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0025 Score=50.74 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=61.3
Q ss_pred CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhc-----CCceEEEecCCCCeEEE
Q psy258 35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQF-----GKPKSFQYLKSFRRMRV 109 (238)
Q Consensus 35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~iv~fv~LkSF~RiiV 109 (238)
.+.+.||-+=|||+.+-. . +|+++++.| |++..++--+..+=++|
T Consensus 18 ~~~~rtiaL~~ipDtvnd-a-----------------------------rIr~lve~~~~i~~g~i~KI~L~pDH~GAiv 67 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSP-S-----------------------------LICQFLQEEIHINEKDIRKILLVSDFNGAII 67 (117)
T ss_dssp TTTTSCEEEECCCTTCCH-H-----------------------------HHHHHHHHHTCCCTTTCSEEEEETTTTEEEE
T ss_pred ccCCcEEEEecCCCCCCH-H-----------------------------HHHHHHhhhhccCccceeEEEEecCCCceEE
Confidence 356789999999987654 2 233444567 89999999999999999
Q ss_pred EeCCHHHHHHHHHHhcCCccCCcceEEE
Q psy258 110 NYESSAAAAKARINLHQSVFASSKINVY 137 (238)
Q Consensus 110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIy 137 (238)
.|.|..+|.+|...|+|..|.|+.+||.
T Consensus 68 ef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 68 IFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp ECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred EEccchhhHHHHhhcCCeeecCeEEEec
Confidence 9999999999999999999999888875
No 209
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.07 E-value=0.0011 Score=52.59 Aligned_cols=72 Identities=19% Similarity=0.133 Sum_probs=53.8
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCce--EEEec-----CCCCeEEEE
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPK--SFQYL-----KSFRRMRVN 110 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv--~fv~L-----kSF~RiiVV 110 (238)
..+|+|.||+..+-+ +.|+.+|++| .++ .+... ++.|=++|.
T Consensus 42 ~~~lfVgnLp~~~te-----~dL~~~F~~~--------------------------~i~~~~v~i~~d~~GrsrGfaFV~ 90 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTK-----EEIVQFFSGL--------------------------EIVPNGITLPVDPEGKITGEAFVQ 90 (126)
T ss_dssp CCEEEEECCCTTCCH-----HHHHHHTTTS--------------------------CEEEEEEECCCCSSSSSCSEEEEE
T ss_pred CCEEEEeCCCCCCCH-----HHHHHHHhcC--------------------------CceeeEEEEEECCCCCCceEEEEE
Confidence 369999999986554 3566777744 344 44433 234669999
Q ss_pred eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258 111 YESSAAAAKARINLHQSVFASSKINVYFVQP 141 (238)
Q Consensus 111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~ 141 (238)
|.+.++|.+|... ++..+.|+.++|..+..
T Consensus 91 F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 91 FASQELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp ESSTTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred ECCHHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 9999999999985 66889999999988753
No 210
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.30 E-value=0.28 Score=38.74 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=49.2
Q ss_pred CCCC--cEEEecCCCC-CCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeC
Q psy258 36 QLPK--SLIITNLNPD-LFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYE 112 (238)
Q Consensus 36 ~~p~--TLiitnL~~~-vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~ 112 (238)
++|. -|+|.||+.. +- .+.|+++|++| |++..+.+.+.-.-.+|-|.
T Consensus 14 ~~~~G~il~v~~l~~~~~s-----redLke~F~~~-------------------------G~V~~Vd~~~g~~tgfVrf~ 63 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTC-----REDLHILFSNH-------------------------GEIKWIDFVRGAKEGIILFK 63 (121)
T ss_dssp SCCCCCEEEEEESCCSSCC-----HHHHHHHTCSS-------------------------CCEEEEECCTTCSEEEEEES
T ss_pred cccCCeEEEEecCCCCcCC-----HHHHHHHHHhc-------------------------CCEEEEEEecCCCEEEEEEC
Confidence 4454 7889999876 33 45667778855 44444444454445999999
Q ss_pred C-HHHHHHHHHHhc--CCccCCcceEEE
Q psy258 113 S-SAAAAKARINLH--QSVFASSKINVY 137 (238)
Q Consensus 113 ~-~eaA~~Ar~~L~--~~~f~g~~lrIy 137 (238)
+ .++|..|...++ +..+.+..+++-
T Consensus 64 ~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 64 EKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp SCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 9 788888888884 456777655543
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.12 E-value=0.63 Score=36.21 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=48.1
Q ss_pred CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258 37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA 116 (238)
Q Consensus 37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea 116 (238)
.-.++.|+||++.+-. + .|+-.|..= -.+-=|++..+.+++ +.++|.|.+.+.
T Consensus 7 ~~~~I~V~~lPp~~~~-e----~L~LYFEn~--------------------rrsGGG~V~~v~~~~--~~AvItF~d~~v 59 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPD-E----LLTLYFENR--------------------RRSGGGPVLSWQRLG--CGGVLTFREPAD 59 (104)
T ss_dssp CCCEEEEESCCTTSCH-H----HHHHHHHCT--------------------TTTCCCCEEEEEEET--TEEEEEESSHHH
T ss_pred CccEEEEECCCCCCCh-h----HheEEEeCC--------------------CcCCCceeeEEEEcC--CcEEEEEcChHH
Confidence 3469999999987632 2 333334420 000126888999999 999999999999
Q ss_pred HHHHHHHhcCCccCCcceEEE
Q psy258 117 AAKARINLHQSVFASSKINVY 137 (238)
Q Consensus 117 A~~Ar~~L~~~~f~g~~lrIy 137 (238)
|.++...- ...|++.++.|+
T Consensus 60 a~rVL~k~-~H~L~~~~LsV~ 79 (104)
T 2dhx_A 60 AERVLAQA-DHELHGAQLSLR 79 (104)
T ss_dssp HHHHHTCS-CCBSSSSBCEEE
T ss_pred HHHHhcCC-cceecCeEEEEE
Confidence 98765431 234676666663
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=79.94 E-value=4.8 Score=31.74 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=29.2
Q ss_pred hcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCccCC
Q psy258 91 QFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFAS 131 (238)
Q Consensus 91 ~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g 131 (238)
+||.+++..+-..-.-+.|.|.+..+|.+|... ++..+.+
T Consensus 46 ~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g 85 (119)
T 1wwh_A 46 QYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGE 85 (119)
T ss_dssp TTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETT
T ss_pred hhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecC
Confidence 445566666634456799999999999999876 6666664
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=66.37 E-value=5.2 Score=29.92 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=26.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhcCCccCCc
Q psy258 103 SFRRMRVNYESSAAAAKARINLHQSVFASS 132 (238)
Q Consensus 103 SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~ 132 (238)
.+.|+-|.|.+.+++..-++.++|..|.+.
T Consensus 44 ~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 44 MYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 567999999999999999999999888764
No 214
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=62.82 E-value=3.5 Score=31.75 Aligned_cols=39 Identities=8% Similarity=-0.111 Sum_probs=34.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHh-cCCccCCcceEEEEeCC
Q psy258 102 KSFRRMRVNYESSAAAAKARINL-HQSVFASSKINVYFVQP 141 (238)
Q Consensus 102 kSF~RiiVVF~~~eaA~~Ar~~L-~~~~f~g~~lrIyFAq~ 141 (238)
+..|+.+|.|.+.+.|.+|...+ ++..+.| .+++.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 45588999999999999999999 8999999 888888754
No 215
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.89 E-value=11 Score=27.70 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=5.4
Q ss_pred HHHHHHhhhhc
Q psy258 82 KEQIETLLSQF 92 (238)
Q Consensus 82 ~~~~~~~~~~~ 92 (238)
.+.++++|+.|
T Consensus 40 e~~l~~~f~~~ 50 (112)
T 2dit_A 40 REDLRVECSKF 50 (112)
T ss_dssp HHHHHHHGGGT
T ss_pred HHHHHHHHHcc
Confidence 34555555443
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=43.97 E-value=7 Score=29.79 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=27.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhcCCccCCc
Q psy258 102 KSFRRMRVNYESSAAAAKARINLHQSVFASS 132 (238)
Q Consensus 102 kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~ 132 (238)
..+.|+-|.|.+.++...-++..+|..|.+.
T Consensus 51 ~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 51 HLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp SCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred CcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 3668999999999999999999999887664
No 217
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=43.41 E-value=58 Score=24.93 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=40.0
Q ss_pred CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA 117 (238)
Q Consensus 38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA 117 (238)
+.-+++ +.|..... ..|+.||++||.+ .+.|+- =--++|+|.+.+.|
T Consensus 16 ~HVf~l-~FP~ewKt-----~DI~~lFs~fggv------------------------~I~Wid---DTsAlvvf~~~~~a 62 (100)
T 1whv_A 16 DHVLHV-TFPKEWKT-----SDLYQLFSAFGNI------------------------QISWID---DTSAFVSLSQPEQV 62 (100)
T ss_dssp CSEEEE-ECCTTCCH-----HHHHHHHTTTCSC------------------------CCEEEE---TTEEEEECSCHHHH
T ss_pred CeEEEE-eCChhhhh-----HHHHHHhhccCCE------------------------EEEEEc---CCeEEEEecCHHHH
Confidence 347778 78765444 3567889977643 345554 34689999999999
Q ss_pred HHHHHHhcC
Q psy258 118 AKARINLHQ 126 (238)
Q Consensus 118 ~~Ar~~L~~ 126 (238)
..|+..+..
T Consensus 63 ~~al~~i~k 71 (100)
T 1whv_A 63 QIAVNTSKY 71 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhccc
Confidence 999987753
No 218
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=39.08 E-value=16 Score=27.62 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=24.8
Q ss_pred CCC-cEEEecCCC--CCCC---ChHHHHHHHHHHhhcCCCc
Q psy258 37 LPK-SLIITNLNP--DLFK---DDALKEQIETLLSQFGKPK 71 (238)
Q Consensus 37 ~p~-TLiitnL~~--~vf~---~~~l~~~l~~lF~~~g~~~ 71 (238)
+|+ +|++.|+=. ++-. .+++++.|+..|++||+|.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~ 45 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVI 45 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCS
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEE
Confidence 444 788999863 2222 1457888999999999974
No 219
>4a34_A RBSD/FUCU transport protein family protein; isomerase; HET: FUL; 2.50A {Streptococcus pneumoniae} SCOP: c.133.1.0
Probab=34.35 E-value=33 Score=27.68 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=17.5
Q ss_pred CCCCcHHHHHHHHhcCCCCc
Q psy258 180 EPLVNYDLLAAIASLTPGLS 199 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge~ 199 (238)
.|++|.||+.+||++++|..
T Consensus 6 ~~iLnpeL~~~LA~mGHgD~ 25 (147)
T 4a34_A 6 PKNISPDLLKTLMEMGHGDE 25 (147)
T ss_dssp CTTSCHHHHHHHHHCCTTCE
T ss_pred CcccCHHHHHHHHhcCCCCE
Confidence 46789999999999999773
No 220
>3mvk_A Protein FUCU, protein RBSD; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; HET: PGE; 1.65A {Bifidobacterium longum subsp} SCOP: c.133.1.0
Probab=32.51 E-value=37 Score=27.39 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.5
Q ss_pred CCCCcHHHHHHHHhcCCCCc
Q psy258 180 EPLVNYDLLAAIASLTPGLS 199 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge~ 199 (238)
.|++|.||+.+||++++|..
T Consensus 6 ~~iLnpeL~~~LA~mGHgD~ 25 (148)
T 3mvk_A 6 PKIIPPELLKVLCEMGHGDQ 25 (148)
T ss_dssp CTTSCHHHHHHHHHCCTTCE
T ss_pred CCCcCHHHHHHHHhcCCCCE
Confidence 46789999999999999873
No 221
>3e7n_A D-ribose high-affinity transport system; D-ribose transport system, RBSD,csgid, structural genomics; 2.45A {Salmonella typhimurium}
Probab=29.40 E-value=27 Score=27.91 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.8
Q ss_pred CCCCcHHHHHHHHhcCCCCc
Q psy258 180 EPLVNYDLLAAIASLTPGLS 199 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge~ 199 (238)
+|.+|.||+.+||++++|..
T Consensus 7 ~~iLnpeLl~~La~mGHgD~ 26 (142)
T 3e7n_A 7 GTVLNSEISSVISRLGHTDT 26 (142)
T ss_dssp SSCCCHHHHHHHHHCCTTCE
T ss_pred cCCCCHHHHHHHHHcCCCCE
Confidence 48899999999999999873
No 222
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=28.77 E-value=40 Score=25.84 Aligned_cols=23 Identities=9% Similarity=-0.162 Sum_probs=19.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhcC
Q psy258 104 FRRMRVNYESSAAAAKARINLHQ 126 (238)
Q Consensus 104 F~RiiVVF~~~eaA~~Ar~~L~~ 126 (238)
=--++|+|.+.+.|..|+..+..
T Consensus 39 DTsAlvvf~~~~~a~~al~~i~~ 61 (101)
T 3ctr_A 39 DTSAFVSLSQPEQVKIAVNTSKY 61 (101)
T ss_dssp TTEEEEEEEEECHHHHHHHHHTT
T ss_pred CCeEEEEecCHHHHHHHHHhccc
Confidence 35699999999999999987753
No 223
>2ob5_A AGR_C_3656P, hypothetical protein ATU2016; putavite sugar binding protein, S genomics, PSI-2, protein structure initiative; HET: MSE; 1.60A {Agrobacterium tumefaciens str} SCOP: c.133.1.1
Probab=28.05 E-value=49 Score=26.83 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=17.1
Q ss_pred CCCCcHHHHHHHHhcCCCC
Q psy258 180 EPLVNYDLLAAIASLTPGL 198 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge 198 (238)
.|.+|.||+.+|+++++|.
T Consensus 10 ~~iLnpeLl~~La~mGHgD 28 (153)
T 2ob5_A 10 DPALNADVLHALRAMGHGD 28 (153)
T ss_dssp CTTSCHHHHHHHHHCCTTC
T ss_pred CCCcCHHHHHHHHHcCCCC
Confidence 4688999999999999977
No 224
>3dsa_A D-ribose high-affinity transport system; D-ribose transport system, RBSD, decamer, csgid, transport protein, structural genomics; 2.45A {Salmonella typhimurium} PDB: 3e7n_A
Probab=27.06 E-value=31 Score=27.65 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.8
Q ss_pred CCCCcHHHHHHHHhcCCCCc
Q psy258 180 EPLVNYDLLAAIASLTPGLS 199 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge~ 199 (238)
+|++|.||+.+||++++|..
T Consensus 7 ~~iLnpeL~~~La~mGHgD~ 26 (142)
T 3dsa_A 7 GTVLNSEISSVISRLGHTDT 26 (142)
T ss_dssp SSCCCHHHHHHHHHCCTTCE
T ss_pred cCCCCHHHHHHHHhcCCCCE
Confidence 38899999999999999873
No 225
>1ogd_A High affinity ribose transport protein RBSD; sugar transport; HET: RIP; 1.95A {Bacillus subtilis} SCOP: c.133.1.1 PDB: 1ogc_A* 1oge_A* 1ogf_A
Probab=25.78 E-value=34 Score=27.08 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.5
Q ss_pred CCCCcHHHHHHHHhcCCCCc
Q psy258 180 EPLVNYDLLAAIASLTPGLS 199 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge~ 199 (238)
.|.+|.||+.+||++++|..
T Consensus 4 ~~iLn~eL~~~La~mGH~D~ 23 (131)
T 1ogd_A 4 HGILNSHLAKILADLGHTDK 23 (131)
T ss_dssp SSCSCHHHHHHHHHCCTTCE
T ss_pred cccCCHHHHHHHHHCCCCCe
Confidence 56789999999999999773
No 226
>2wcv_A L-fucose mutarotase; ribose, pyranase, isomerase, fucose metabolism; HET: FUC; 1.90A {Escherichia coli}
Probab=25.76 E-value=32 Score=27.54 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=17.4
Q ss_pred CCCCcHHHHHHHHhcCCCCc
Q psy258 180 EPLVNYDLLAAIASLTPGLS 199 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge~ 199 (238)
.|.+|.||+.+|+++++|..
T Consensus 6 ~~iLnpeL~~~La~mGHgD~ 25 (140)
T 2wcv_A 6 SPLISPELLKVLAEMGHGDE 25 (140)
T ss_dssp CTTSCHHHHHHHHHCCTTCE
T ss_pred CCCcCHHHHHHHHHcCCCCE
Confidence 46789999999999999773
No 227
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=24.79 E-value=62 Score=24.64 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=12.0
Q ss_pred hHHHHHHHHhhhhcC
Q psy258 79 DALKEQIETLLSQFG 93 (238)
Q Consensus 79 ~~~~~~~~~~~~~~~ 93 (238)
+.||+.++++|+.||
T Consensus 44 ~~L~~~L~~~F~~~G 58 (127)
T 2a3j_A 44 EKLQALLYALASSQG 58 (127)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCC
Confidence 667888888888886
No 228
>2wcu_A FUCU, protein FUCU homolog; fucose, ribose, pyranase, mutarotase, alternative splicing, isomerase; HET: FUC; 1.90A {Mus musculus}
Probab=24.74 E-value=33 Score=27.71 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.3
Q ss_pred CCCCcHHHHHHHHhcCCCCc
Q psy258 180 EPLVNYDLLAAIASLTPGLS 199 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge~ 199 (238)
.|.+|.||+.+|+++++|..
T Consensus 8 ~~iLnpeLl~~La~mGHgD~ 27 (149)
T 2wcu_A 8 PKVLSPELLFALARMGHGDE 27 (149)
T ss_dssp CTTCCHHHHHHHHHCCTTCE
T ss_pred CcCcCHHHHHHHHHCCCCCE
Confidence 36789999999999999773
No 229
>2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1
Probab=23.68 E-value=59 Score=26.03 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=24.3
Q ss_pred HHHHHhhc-CCCcchhhhhhhHHHHHHHHhhhh
Q psy258 60 IETLLSQF-GKPKSFQYLKNDALKEQIETLLSQ 91 (238)
Q Consensus 60 l~~lF~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
|=+||-|| |++++ +.++.+|.++||+-++.
T Consensus 23 lGALyHQFvGtPV~--~eta~sLE~AIE~si~~ 53 (131)
T 2iec_A 23 LGAIYHQFCGTPVS--PGTAEEVAKCIERAALL 53 (131)
T ss_dssp HHHHHHHHTTCEEC--GGGHHHHHHHHHHHHTT
T ss_pred hhhHhhhhcCCccC--cccHHHHHHHHHHHHhc
Confidence 56788888 66664 99999999999998843
No 230
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=23.62 E-value=55 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=19.7
Q ss_pred CeEEEEeCCHHHHHHHHHHhcCCccCCc
Q psy258 105 RRMRVNYESSAAAAKARINLHQSVFASS 132 (238)
Q Consensus 105 ~RiiVVF~~~eaA~~Ar~~L~~~~f~g~ 132 (238)
.=+.|.|.+..+|.+|.+. .+..|.|.
T Consensus 63 NWikItYds~~~A~rAL~~-NG~ii~G~ 89 (132)
T 3p3d_A 63 SWTKITYDNPASAVDALLE-NGAVFNGV 89 (132)
T ss_dssp TEEEEEBSSHHHHHHHHTT-TTCEETTE
T ss_pred cEEEEEcCCHHHHHHHHHh-CCeEeCcE
Confidence 4589999999999988754 34456653
No 231
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=23.05 E-value=57 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=23.6
Q ss_pred HHHHHhhc-CCCcchhhhhhhHHHHHHHHhhh
Q psy258 60 IETLLSQF-GKPKSFQYLKNDALKEQIETLLS 90 (238)
Q Consensus 60 l~~lF~~~-g~~~~~~~~~~~~~~~~~~~~~~ 90 (238)
|=+||-|| |++.+ +.++.+|.++||+-++
T Consensus 26 lGALyHQFvGtPV~--~eta~sLE~AIE~si~ 55 (121)
T 2i52_A 26 LGAIFHQYTGIPVN--SENASMAEEFIERSTM 55 (121)
T ss_dssp HHHHHHHHTTCEEC--TTTHHHHHHHHHHHHT
T ss_pred hhhhhhhccCCccC--cccHHHHHHHHHHHHh
Confidence 55788888 66664 8999999999999884
No 232
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=21.61 E-value=64 Score=25.55 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=23.9
Q ss_pred HHHHHhhc-CCCcchhhhhhhHHHHHHHHhhhh
Q psy258 60 IETLLSQF-GKPKSFQYLKNDALKEQIETLLSQ 91 (238)
Q Consensus 60 l~~lF~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 91 (238)
|=+||-|| |++.+ +.++.+|.++|++-++.
T Consensus 31 lGALyHQFvGtPV~--~eta~sLE~AIE~si~~ 61 (122)
T 2ogf_A 31 LGALFHQFVGTPVS--KYNKESLERAIEEAMKN 61 (122)
T ss_dssp HHHHHHHHTTCEEC--TTTHHHHHHHHHHHHHT
T ss_pred hhhHhhhhcCCccC--cccHHHHHHHHHHHHhc
Confidence 55788888 66664 89999999999998843
No 233
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=21.51 E-value=48 Score=25.13 Aligned_cols=26 Identities=12% Similarity=-0.046 Sum_probs=22.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhcCC
Q psy258 102 KSFRRMRVNYESSAAAAKARINLHQS 127 (238)
Q Consensus 102 kSF~RiiVVF~~~eaA~~Ar~~L~~~ 127 (238)
++.|..+|.|.+.++|.+|...+++.
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhccc
Confidence 57799999999999999999887763
No 234
>3p12_A D-ribose pyranase; carbohydrate metabolism, ISOM; 2.35A {Staphylococcus aureus} SCOP: c.133.1.0 PDB: 3p13_A*
Probab=20.42 E-value=45 Score=26.88 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHhcCCCCc
Q psy258 180 EPLVNYDLLAAIASLTPGLS 199 (238)
Q Consensus 180 ~P~~~~DL~~ala~L~~ge~ 199 (238)
.|.+|.||+.+||++++|..
T Consensus 6 ~~iLnpeL~~~LA~mGHgD~ 25 (144)
T 3p12_A 6 SAVLNEHISKAIATIGHFDL 25 (144)
T ss_dssp --CCCHHHHHHHHTCCTTCE
T ss_pred cCCcCHHHHHHHHhcCCCCE
Confidence 37889999999999999773
Done!