RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy258
(238 letters)
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 62.1 bits (150), Expect = 3e-13
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 32/131 (24%)
Query: 38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKS 97
LI N D+F + + + E+L + K +FQY K+
Sbjct: 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------------------- 45
Query: 98 FQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAP 157
F+R+R+N+ + +AA AR+ LH++ F ++ +YF Q + HL PP P
Sbjct: 46 ------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHI---GSSHLAPPNP 96
Query: 158 TKQFLISPPSS 168
K S PSS
Sbjct: 97 DK----SGPSS 103
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 35.4 bits (81), Expect = 9e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 76 LKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYESSAAAAKARINLHQSVF 129
L + + + FG Q V +E + AA A N+++S
Sbjct: 13 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 72
Query: 130 ASSKINVYFVQPMTP 144
I V +PM
Sbjct: 73 FGRTIRVNLAKPMRI 87
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 33.8 bits (77), Expect = 0.005
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 76 LKNDALKEQIETLLSQFGKPKSFQYLKSFRRMR---VNYESSAAAAKARINLHQSVFASS 132
L E++ + ++G + + + V YE A A +L +
Sbjct: 15 LPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNR 74
Query: 133 KINVYFVQPMTPFDSADQ 150
+ V + F D
Sbjct: 75 YLVVLYYNANRAFQKMDT 92
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 31.9 bits (72), Expect = 0.014
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 26/111 (23%)
Query: 31 LINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLS 90
++ D+ P++L + NL+ D+ + I L SQ G KS + +
Sbjct: 1 MMEDDGQPRTLYVGNLSRDVTEVL-----ILQLFSQIGPCKSCKMITEHT---------- 45
Query: 91 QFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141
+ V + AA A ++ ++ V +
Sbjct: 46 -----------SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 85
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 31.8 bits (72), Expect = 0.015
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 76 LKNDALKEQIETLLSQFGKPKSFQYLKSFRRMR------VNYESSAAAAKARINLHQSVF 129
L +EQI L S+ G K + V Y S A A A ++ +
Sbjct: 15 LSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL 74
Query: 130 ASSKINVYFVQP 141
I +
Sbjct: 75 DDRIIRTDWDAG 86
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 31.0 bits (70), Expect = 0.028
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 79 DALKEQIETLLSQFGKPKSFQYLKSFRRMR--VNYESSAAAAKARINLHQSVFASSKINV 136
+ ++E + S+FG+ + V++ A L F +I
Sbjct: 30 NEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
Query: 137 YFVQPMTPF 145
T +
Sbjct: 90 QAWDGTTDY 98
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 30.6 bits (69), Expect = 0.045
Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 31/112 (27%)
Query: 33 NDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQF 92
+ + + I NLN + K ++ + S++
Sbjct: 10 DPRSMNSRVFIGNLNTLVVKKSDVEA-----------------------------IFSKY 40
Query: 93 GKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTP 144
GK K F + Y + A A + A +++
Sbjct: 41 GKIVGCSVHKGFAFV--QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKV 90
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 30.1 bits (67), Expect = 0.052
Identities = 10/73 (13%), Positives = 16/73 (21%), Gaps = 6/73 (8%)
Query: 76 LKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYESSAAAAKARINLHQSVF 129
+ I LL L S R ++ S A L+
Sbjct: 9 FPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI 68
Query: 130 ASSKINVYFVQPM 142
+ P+
Sbjct: 69 EGYTLVTKVSNPL 81
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit
beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 119
Score = 29.5 bits (67), Expect = 0.12
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 198 LSHELHAPSESQPGIVVHVCEDGAMVGTKRI 228
HE+ +PG++ V E G ++ R
Sbjct: 28 KYHEVV-----KPGVIKRVAESGDVIYVVRF 53
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 28.8 bits (64), Expect = 0.13
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 76 LKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYESSAAAAKARINLHQSVF 129
L N +Q++ LL+ FG K+F + S Y +A L+
Sbjct: 9 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL 68
Query: 130 ASSKINVYFVQPM 142
K+ V
Sbjct: 69 GDKKLLVQRASVG 81
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit
beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Length = 134
Score = 27.7 bits (62), Expect = 0.72
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 197 GLSHELHAPSESQPGIVVHVCEDGAMVGTKRI 228
L HE+ +PG+++HV E G V T R+
Sbjct: 40 WLYHEIL-----EPGVLMHVAESGDKVYTVRV 66
>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 726
Score = 27.2 bits (60), Expect = 2.0
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 27 SLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYL-KNDALKEQI 85
L D +N+E LP T+++PD F ++ +++ P++ L D L+ QI
Sbjct: 14 VLYDFVNNEALPG----TDIDPDSFWAG-----VDKVVADLT-PQNQALLNARDELQAQI 63
Query: 86 -ETLLSQFGKPKSFQYLKSF 104
+ + +P + F
Sbjct: 64 DKWHRRRVIEPIDMDAYRQF 83
>d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 24.6 bits (54), Expect = 2.4
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 26 DSLDDLINDEQLPKSLIITNL-NPDLFKDDALKEQI 60
+SLD+LI +Q+ L + L D + AL +++
Sbjct: 15 ESLDELIQSQQITPQLALQVLLQFDKAINAALAQRV 50
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 26.8 bits (58), Expect = 2.5
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
Query: 39 KSLIITNLNPDLFKDDALKEQIETLLSQFG--------KPKSFQYLKNDALKEQIETLLS 90
++ +I N +P E + TL +FG K K L LK+ + +
Sbjct: 299 RTTLIINCSPS---SYNDAETLSTL--RFGMRAKSIKNKAKVNAELSPAELKQMLAKAKT 353
Query: 91 Q 91
Q
Sbjct: 354 Q 354
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 50
Score = 24.6 bits (54), Expect = 2.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 26 DSLDDLINDEQLPKSLIITNLNP-DLFKDDALKE 58
D+LD LI+D ++ SL + L D + LK+
Sbjct: 17 DALDTLISDGRIEASLAMRVLETFDKVVAETLKD 50
>d1esza_ c.92.2.1 (A:) Periplasmic ferric siderophore binding
protein FhuD {Escherichia coli [TaxId: 562]}
Length = 260
Score = 26.4 bits (57), Expect = 3.6
Identities = 5/82 (6%), Positives = 21/82 (25%), Gaps = 4/82 (4%)
Query: 43 ITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKN----DALKEQIETLLSQFGKPKSF 98
+T + P A +L++ + F + ++ + + +
Sbjct: 60 LTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAA 119
Query: 99 QYLKSFRRMRVNYESSAAAAKA 120
+ + + +
Sbjct: 120 ETHLAQYEDFIRSMKPRFVKRG 141
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 25.6 bits (56), Expect = 4.9
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 57 KEQIETLLSQFGKPKSFQYLKNDAL-----KEQIETLLSQFGKPKSFQYLKSFRRMRVNY 111
++ + L K + Q L+ND L K ++ F Q + F ++
Sbjct: 130 EKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKMLRFLESHLDD 189
Query: 112 ESS 114
Sbjct: 190 AEP 192
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.7 bits (53), Expect = 5.6
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 76 LKNDALKEQIETLLSQFGK-----PKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFA 130
L D +E I+ P+ + + + + ++L++
Sbjct: 23 LPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG 82
Query: 131 SSKINVYFVQPMTPFDSA 148
+ +I V DS
Sbjct: 83 NKRIRVDVADQAQDKDSG 100
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor
(MIF) {Trichinella spiralis [TaxId: 6334]}
Length = 113
Score = 24.8 bits (54), Expect = 5.8
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 42 IITNLNPDLFKDDALKEQIETLLSQFGKPKSF 73
+ TN+ D L + + KP S+
Sbjct: 5 LNTNIKATDVPSDFLSSTSALVGNILSKPGSY 36
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor
(MIF) {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 115
Score = 24.8 bits (54), Expect = 6.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 42 IITNLNPDLFKDDALKEQIETLLSQFGKPKSF 73
I TN+ D D L + + L GKP +
Sbjct: 6 IRTNVCRDSVPDTLLSDLTKQLAKATGKPAEY 37
>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
562]}
Length = 720
Score = 25.7 bits (56), Expect = 6.5
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 27 SLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYL-KNDALKEQI 85
+ +++E LP T L+ F + + ++ P++ Q L + D ++ +
Sbjct: 13 NFKRFVDEEVLPG----TGLDAAAFWRN-----FDEIVHDLA-PENRQLLAERDRIQAAL 62
Query: 86 ET-LLSQFGKPKSFQYLKSF 104
+ S G K KSF
Sbjct: 63 DEWHRSNPGPVKDKAAYKSF 82
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus
jannaschii [TaxId: 2190]}
Length = 67
Score = 23.9 bits (52), Expect = 7.0
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 115 AAAAKARINLHQSVFASSKINVYFV 139
A +++ N+ SS++N+ FV
Sbjct: 23 TAVSESGANIKMIAQGSSEVNISFV 47
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear
ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId:
9606]}
Length = 249
Score = 25.1 bits (55), Expect = 7.2
Identities = 4/31 (12%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 3 EDEDDHKMIINAIDNLKDTGDMGDSLDDLIN 33
E ++++I++A + +++ +N
Sbjct: 1 EAAPEYRVIVDANNLT-------VEIENELN 24
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 24.0 bits (52), Expect = 9.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 119 KARINLHQSVFASSKINV 136
+ +H VFA +NV
Sbjct: 71 EVSFQVHSEVFAKVIVNV 88
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 204
Score = 24.8 bits (54), Expect = 9.4
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 57 KEQIETLLSQFGKPKSFQYLKNDAL-----KEQIETLLSQFGKPKSFQYLKSF 104
KE E FG P S K+ L K+ + F + +KS+
Sbjct: 130 KEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKIKSY 182
>d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 70
Score = 23.4 bits (50), Expect = 9.6
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 30 DLINDEQLPKSLIITNLNPDLFKDD 54
D++ + ++P ++ N + D+
Sbjct: 28 DVLGELEIPIETVVVKKNGQIVIDE 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.382
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 862,324
Number of extensions: 38763
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 34
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)