Query psy2580
Match_columns 65
No_of_seqs 40 out of 42
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 19:48:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s1g_A Potassium voltage-gated 98.9 4.8E-10 1.6E-14 72.2 2.8 32 31-62 9-40 (124)
2 2nz0_B Potassium voltage-gated 98.9 1.1E-09 3.7E-14 72.0 4.5 33 30-62 30-62 (140)
3 3kvt_A Potassium channel prote 98.9 6.4E-10 2.2E-14 70.6 2.9 30 33-62 3-32 (115)
4 1t1d_A Protein (potassium chan 98.9 7.5E-10 2.6E-14 69.1 2.8 27 36-62 2-28 (100)
5 1nn7_A Potassium channel KV4.2 98.9 7.6E-10 2.6E-14 68.9 2.8 26 37-62 2-27 (105)
6 3drz_A BTB/POZ domain-containi 98.8 1.4E-09 4.8E-14 67.0 2.5 29 33-61 4-32 (107)
7 2r9r_B Paddle chimera voltage 98.6 1.1E-08 3.6E-13 76.5 2.8 43 20-62 37-79 (514)
8 3drx_A BTB/POZ domain-containi 98.6 2.1E-08 7.2E-13 70.4 3.1 33 29-61 6-38 (202)
9 1wgm_A Ubiquitin conjugation f 46.8 31 0.0011 20.2 3.9 23 26-48 25-47 (98)
10 1mby_A SAK, serine/threonine k 32.7 12 0.00041 23.7 0.5 24 37-60 37-60 (88)
11 2xts_A Sulfite dehydrogenase; 25.1 37 0.0013 25.1 2.1 49 11-64 66-117 (390)
12 2d9r_A Conserved hypothetical 25.1 32 0.0011 21.3 1.5 18 34-51 53-70 (104)
13 1pf5_A Hypothetical protein YJ 22.0 92 0.0032 18.6 3.2 27 22-50 10-36 (131)
14 2a9d_A Sulfite oxidase; molybd 21.3 1E+02 0.0035 22.5 3.8 48 11-63 36-87 (372)
No 1
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=98.92 E-value=4.8e-10 Score=72.17 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=27.3
Q ss_pred ccCCCcEEEeecceeEechhHHHhhcccccee
Q psy2580 31 SRYTAPVHIDVGGTIYTSSLETLTKLYLLEIC 62 (65)
Q Consensus 31 ~~~~apVhlnVGG~iYTTSLsTLtkyPds~l~ 62 (65)
.+....|+|||||++|+|+++||+|||||.|.
T Consensus 9 ~~~~~~V~LNVGG~~F~t~~~TL~~~p~S~L~ 40 (124)
T 1s1g_A 9 KRQDELIVLNVSGRRFQTWRTTLERYPDTLLG 40 (124)
T ss_dssp ---CCEEEEEETTEEEEEEHHHHTTSTTSSTT
T ss_pred CCCCCEEEEEeCCEEEEEeHHHHhcCCCceec
Confidence 35678999999999999999999999999873
No 2
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=98.91 E-value=1.1e-09 Score=72.02 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=29.4
Q ss_pred cccCCCcEEEeecceeEechhHHHhhcccccee
Q psy2580 30 ASRYTAPVHIDVGGTIYTSSLETLTKLYLLEIC 62 (65)
Q Consensus 30 ~~~~~apVhlnVGG~iYTTSLsTLtkyPds~l~ 62 (65)
.......|+|||||++|+|+++||+|||||.|.
T Consensus 30 ~~~~~~~V~LNVGG~~F~T~~~TL~~~P~S~L~ 62 (140)
T 2nz0_B 30 NKRQDELIVLNVSGRRFQTWRTTLERYPDTLLG 62 (140)
T ss_dssp CTTCCCEEEEEETTEEEEEEHHHHHTCTTSTTT
T ss_pred cCCCCCEEEEEECCEEEEeeHHHHhcCCCeeec
Confidence 345678999999999999999999999999873
No 3
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=98.90 E-value=6.4e-10 Score=70.65 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=26.9
Q ss_pred CCCcEEEeecceeEechhHHHhhcccccee
Q psy2580 33 YTAPVHIDVGGTIYTSSLETLTKLYLLEIC 62 (65)
Q Consensus 33 ~~apVhlnVGG~iYTTSLsTLtkyPds~l~ 62 (65)
....|+|||||++|+|+.+||+|||+|.|.
T Consensus 3 ~~~~V~LNVGG~~f~T~~~TL~~~P~s~L~ 32 (115)
T 3kvt_A 3 AENRVIINVGGIRHETYKATLKKIPATRLS 32 (115)
T ss_dssp -CCEEEEEETTEEEEEEHHHHTTSCSSTTT
T ss_pred CCCEEEEEECCEEEEecHHHHhcCCCccHH
Confidence 357899999999999999999999999764
No 4
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=98.88 E-value=7.5e-10 Score=69.09 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=25.2
Q ss_pred cEEEeecceeEechhHHHhhcccccee
Q psy2580 36 PVHIDVGGTIYTSSLETLTKLYLLEIC 62 (65)
Q Consensus 36 pVhlnVGG~iYTTSLsTLtkyPds~l~ 62 (65)
.|+|||||++|+|+.+||+|||||.|.
T Consensus 2 ~v~LNVGG~~f~t~~~TL~~~p~s~L~ 28 (100)
T 1t1d_A 2 RVVINVSGLRFETQLKTLNQFPDTLLG 28 (100)
T ss_dssp EEEEEETTEEEEEEHHHHHTSTTSTTT
T ss_pred EEEEEECCEEEEeeHHHHhcCCCcccc
Confidence 689999999999999999999999763
No 5
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=98.88 E-value=7.6e-10 Score=68.88 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=24.5
Q ss_pred EEEeecceeEechhHHHhhcccccee
Q psy2580 37 VHIDVGGTIYTSSLETLTKLYLLEIC 62 (65)
Q Consensus 37 VhlnVGG~iYTTSLsTLtkyPds~l~ 62 (65)
|+|||||++|+|+++||++||||.|.
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s~L~ 27 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDTLLG 27 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTT
T ss_pred EEEEECCEEEEEeHHHHhcCCCcccc
Confidence 89999999999999999999999763
No 6
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.83 E-value=1.4e-09 Score=66.99 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=26.1
Q ss_pred CCCcEEEeecceeEechhHHHhhccccce
Q psy2580 33 YTAPVHIDVGGTIYTSSLETLTKLYLLEI 61 (65)
Q Consensus 33 ~~apVhlnVGG~iYTTSLsTLtkyPds~l 61 (65)
.+..|+|||||++|+|+.+||++||+|.|
T Consensus 4 ~~~~v~LNVGG~~f~t~~~TL~~~p~s~L 32 (107)
T 3drz_A 4 VSKWVRLNVGGTYFLTTRQTLCRDPKSFL 32 (107)
T ss_dssp -CCEEEEEETTEEEEEEHHHHTSSTTSHH
T ss_pred CCCEEEEEECCEEEEECHHHHhcCCCcch
Confidence 35789999999999999999999999865
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.64 E-value=1.1e-08 Score=76.54 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=27.7
Q ss_pred CCCCCCcccccccCCCcEEEeecceeEechhHHHhhcccccee
Q psy2580 20 KITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEIC 62 (65)
Q Consensus 20 ~~~giP~~A~~~~~~apVhlnVGG~iYTTSLsTLtkyPds~l~ 62 (65)
...|++.++........|.|||||+.|+|+.+||+||||+.|.
T Consensus 37 ~~~~~~~~~~~~~~~~~v~lNVgG~~f~t~~~tL~~~p~s~l~ 79 (514)
T 2r9r_B 37 HPQDTYDPEADHESSERVVINISGLRFETQLKTLAQFPETLLG 79 (514)
T ss_dssp --------------CCEEEEEETTEEEEEEHHHHTTSTTSTTT
T ss_pred CccCCcCccccCCCCCEEEEEeCCEEEEecHHHHhcCCCCccc
Confidence 3457778888888999999999999999999999999999874
No 8
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=98.59 E-value=2.1e-08 Score=70.37 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=29.5
Q ss_pred ccccCCCcEEEeecceeEechhHHHhhccccce
Q psy2580 29 AASRYTAPVHIDVGGTIYTSSLETLTKLYLLEI 61 (65)
Q Consensus 29 ~~~~~~apVhlnVGG~iYTTSLsTLtkyPds~l 61 (65)
.+......|+|||||++|+|+.+||+|||||.|
T Consensus 6 ~~g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L 38 (202)
T 3drx_A 6 RPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFL 38 (202)
T ss_dssp CSSCCCCEEEEEETTEEEEEETTGGGSCTTSST
T ss_pred CCCCCCCEEEEEECCEEEEEeHHHHhCCCcchH
Confidence 345678899999999999999999999999875
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=46.76 E-value=31 Score=20.21 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=18.1
Q ss_pred cccccccCCCcEEEeecceeEec
Q psy2580 26 CVAAASRYTAPVHIDVGGTIYTS 48 (65)
Q Consensus 26 ~~A~~~~~~apVhlnVGG~iYTT 48 (65)
++-...-|.+||.+.-|||.|=-
T Consensus 25 CpI~~~~m~dPV~~~cG~htf~r 47 (98)
T 1wgm_A 25 DPIMSTLMCDPVVLPSSRVTVDR 47 (98)
T ss_dssp CTTTCSBCSSEEECTTTCCEEEH
T ss_pred CcCccccccCCeECCCCCeEECH
Confidence 34455679999999999999963
No 10
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=32.73 E-value=12 Score=23.68 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=19.4
Q ss_pred EEEeecceeEechhHHHhhccccc
Q psy2580 37 VHIDVGGTIYTSSLETLTKLYLLE 60 (65)
Q Consensus 37 VhlnVGG~iYTTSLsTLtkyPds~ 60 (65)
|.=++||..||.+-.+.+||.+.+
T Consensus 37 ~~p~~~~ItYt~~~G~~t~y~~~d 60 (88)
T 1mby_A 37 MQAGVSSISYTSPDGQTTRYGENE 60 (88)
T ss_dssp EEEEEEEEEEECTTSCEEEEETTS
T ss_pred EecCcceeEEeCCCCceEEcCcCC
Confidence 344669999999999899998653
No 11
>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=25.14 E-value=37 Score=25.14 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=33.3
Q ss_pred CCCCCCcCCCCCCCCcccccccCCCcEEEeecce---eEechhHHHhhccccceeec
Q psy2580 11 PPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGT---IYTSSLETLTKLYLLEICYD 64 (65)
Q Consensus 11 ~p~~~~y~~~~~giP~~A~~~~~~apVhlnVGG~---iYTTSLsTLtkyPds~l~~~ 64 (65)
||...-|.-...++|.+.. +.-.|.|.|. -.+=||+-|.+||..++-++
T Consensus 66 TP~~~~y~r~h~~vP~id~-----~~w~L~V~G~V~~p~~ltl~dL~~lp~~~~~~~ 117 (390)
T 2xts_A 66 TPQGCAFERHHSGAIELSK-----QDYRLMINGLVEKPLVFTFEDLLRFPRTTTTAF 117 (390)
T ss_dssp CCGGGSCCEESSCBCCCCT-----TTCCEEEEESBSSCEEECHHHHTTSCCEEEEEE
T ss_pred CCCCceEEecCCCCCccCC-----CCeEEEEEeEcCCCeEEcHHHHhcCCCEEEEEE
Confidence 3444557777778886432 4556777773 36778999999998876543
No 12
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=25.08 E-value=32 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.6
Q ss_pred CCcEEEeecceeEechhH
Q psy2580 34 TAPVHIDVGGTIYTSSLE 51 (65)
Q Consensus 34 ~apVhlnVGG~iYTTSLs 51 (65)
.-+|+..+||+-|.+||-
T Consensus 53 ~v~V~~tI~g~~~~tsL~ 70 (104)
T 2d9r_A 53 RVRVNATFDGYPYTGYIV 70 (104)
T ss_dssp CEEEEEEETTEEEEEEEE
T ss_pred ceEEEEEECCEEEEEEEE
Confidence 458999999999999874
No 13
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=21.95 E-value=92 Score=18.62 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=16.6
Q ss_pred CCCCcccccccCCCcEEEeecceeEechh
Q psy2580 22 TGIPCVAAASRYTAPVHIDVGGTIYTSSL 50 (65)
Q Consensus 22 ~giP~~A~~~~~~apVhlnVGG~iYTTSL 50 (65)
.|+++++....|..-|. +|+.+|.|..
T Consensus 10 ~~~~~~~~~~~ys~av~--~g~~l~vSGq 36 (131)
T 1pf5_A 10 AGRHSLYAEHRYSAAIR--SGDLLFVSGQ 36 (131)
T ss_dssp SSCCTTTTTTTCCSEEE--ETTEEEEEEE
T ss_pred CCccCCCCCCCcCCEEE--ECCEEEEccc
Confidence 44554444555665554 4899998853
No 14
>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*
Probab=21.35 E-value=1e+02 Score=22.49 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=33.9
Q ss_pred CCCCCCcCCCCCCCCcccccccCCCcEEEeeccee---EechhHHHh-hccccceee
Q psy2580 11 PPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTI---YTSSLETLT-KLYLLEICY 63 (65)
Q Consensus 11 ~p~~~~y~~~~~giP~~A~~~~~~apVhlnVGG~i---YTTSLsTLt-kyPds~l~~ 63 (65)
||...-|.-+..++|.+. .+.-.|.|.|.+ .+=||+-|. +||..++-+
T Consensus 36 TP~~~~yvr~h~~vP~id-----~~~w~L~V~G~V~~p~~ltl~dL~~~lp~~~~~~ 87 (372)
T 2a9d_A 36 TPNELFFTRNHLPVPAVE-----PSSYRLRVDGPGGRTLSLSLAELRSRFPKHEVTA 87 (372)
T ss_dssp CCTTTSCEECSSCCCCCC-----TTTCEEEEECC---CEEEEHHHHHHHSCCEEEEE
T ss_pred CCchheeEecCCCCCccc-----CCCeEEEEEeEcCCceEEeHHHHHhhCCCeEEEE
Confidence 444555766778888753 356788888843 677999999 999887643
Done!