RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2580
         (65 letters)



>gnl|CDD|224597 COG1683, COG1683, Uncharacterized conserved protein [Function
           unknown].
          Length = 156

 Score = 26.9 bits (60), Expect = 0.55
 Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 6/57 (10%)

Query: 7   PTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEICY 63
           P P PPA      +I G   V   +R       DV     + +  TL       I  
Sbjct: 52  PVPRPPA------EIVGGKDVLGRARVVEDGGRDVTEAFLSGAERTLALAKEAGIDG 102


>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain.  The
          N-terminal, cytoplasmic tetramerisation domain (T1) of
          voltage-gated K+ channels encodes molecular
          determinants for subfamily-specific assembly of
          alpha-subunits into functional tetrameric channels. It
          is distantly related to the BTB/POZ domain pfam00651.
          Length = 92

 Score = 25.6 bits (57), Expect = 1.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 37 VHIDVGGTIYTSSLETLTKL 56
          V ++VGG  + +S  TLT+ 
Sbjct: 1  VRLNVGGKRFETSKSTLTRF 20


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0805    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,181,496
Number of extensions: 215517
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 4
Length of query: 65
Length of database: 10,937,602
Length adjustment: 36
Effective length of query: 29
Effective length of database: 9,340,858
Effective search space: 270884882
Effective search space used: 270884882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)