RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2580
         (65 letters)



>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea
          hare (Aplysia californica) [TaxId: 6500]}
          Length = 100

 Score = 32.9 bits (75), Expect = 6e-04
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 37 VHIDVGGTIYTSSLETLTK 55
          V I+V G  + + L+TL +
Sbjct: 3  VVINVSGLRFETQLKTLNQ 21


>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 105

 Score = 31.8 bits (72), Expect = 0.002
 Identities = 5/19 (26%), Positives = 12/19 (63%)

Query: 37 VHIDVGGTIYTSSLETLTK 55
          + ++V GT + +  +TL +
Sbjct: 2  IVLNVSGTRFQTWQDTLER 20


>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
          {California sea hare (Aplysia californica) [TaxId:
          6500]}
          Length = 103

 Score = 30.6 bits (69), Expect = 0.004
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 37 VHIDVGGTIYTSSLETLTK 55
          V I+VGG  + +   TL K
Sbjct: 4  VIINVGGIRHETYKATLKK 22


>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 184

 Score = 25.4 bits (55), Expect = 0.40
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 2   SNSSSPTPTPPAPLAFNHKITG 23
             +S P    PA  AF  K+ G
Sbjct: 142 RGASQPPTPTPASDAFQRKLEG 163


>d1ex0a1 b.1.18.9 (A:7-190) Transglutaminase N-terminal domain
           {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
          Length = 184

 Score = 25.2 bits (55), Expect = 0.53
 Identities = 5/36 (13%), Positives = 11/36 (30%)

Query: 24  IPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLL 59
                   ++   V +     +  +S    T  Y+L
Sbjct: 142 SSPKCIVGKFRMYVAVWTPYGVLRTSRNPETDTYIL 177


>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 134

 Score = 22.8 bits (49), Expect = 3.0
 Identities = 4/33 (12%), Positives = 8/33 (24%)

Query: 9  PTPPAPLAFNHKITGIPCVAAASRYTAPVHIDV 41
           T         +   +      S +  P + D 
Sbjct: 27 STDAKVYIPTGQQVTVLIHYCGSVFAEPENTDA 59


>d2bbva_ b.121.4.4 (A:) Alphanodavirus capsid protein {Black beetle
           virus [TaxId: 12285]}
          Length = 308

 Score = 23.0 bits (49), Expect = 3.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 1   MSNSSSPTPTPPAPLAFNHKITGIPCVAA 29
           +SN   P  T PA  A  H + G+  V A
Sbjct: 142 LSNVQFPVATTPATSALVHTLVGLDGVLA 170


>d1hbnb1 a.89.1.1 (B:189-443) Beta chain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 255

 Score = 22.1 bits (47), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 6/19 (31%)

Query: 18  NHKIT------GIPCVAAA 30
           NH +T       IPCVAAA
Sbjct: 190 NHIVTRHSKGFAIPCVAAA 208


>d1e6yb1 a.89.1.1 (B:2186-2433) Beta chain {Archaeon Methanosarcina
           barkeri [TaxId: 2208]}
          Length = 248

 Score = 21.7 bits (46), Expect = 8.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 14/46 (30%)

Query: 18  NHKIT------GIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLY 57
           NH +T       IPCV AA      V +D G  ++  S+E+ + L 
Sbjct: 191 NHVVTRHSRGFAIPCVCAA------VALDAGTQMF--SIESTSGLI 228


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 233,623
Number of extensions: 7983
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 10
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)