Query psy2584
Match_columns 397
No_of_seqs 230 out of 822
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 19:55:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xd3_A Ubiquitin carboxyl-term 100.0 5.2E-75 1.8E-79 550.8 24.1 221 69-333 4-226 (230)
2 4dm9_A Ubiquitin carboxyl-term 100.0 6.7E-74 2.3E-78 542.6 23.5 217 68-333 5-223 (228)
3 2wdt_A Ubiquitin carboxyl-term 100.0 9.2E-72 3.2E-76 529.2 15.8 214 70-333 6-222 (232)
4 1cmx_A Protein (ubiquitin YUH1 100.0 6.1E-70 2.1E-74 517.4 13.4 211 70-333 7-230 (235)
5 3rii_A Ubiquitin carboxyl-term 100.0 1.9E-68 6.4E-73 506.8 16.2 210 72-333 12-227 (233)
6 3ihr_A Ubiquitin carboxyl-term 100.0 6.1E-66 2.1E-70 509.7 15.0 210 69-333 6-222 (328)
7 4dm9_A Ubiquitin carboxyl-term 99.7 8.5E-18 2.9E-22 159.1 4.7 64 332-397 46-109 (228)
8 1xd3_A Ubiquitin carboxyl-term 99.7 1E-17 3.5E-22 158.7 4.3 65 332-396 44-108 (230)
9 2wdt_A Ubiquitin carboxyl-term 99.6 6.2E-16 2.1E-20 146.7 3.0 62 332-396 44-105 (232)
10 1cmx_A Protein (ubiquitin YUH1 99.5 1E-15 3.4E-20 145.5 3.1 55 333-395 48-102 (235)
11 3rii_A Ubiquitin carboxyl-term 99.4 4.7E-14 1.6E-18 133.9 -0.8 55 335-396 52-106 (233)
12 3ihr_A Ubiquitin carboxyl-term 99.3 2.3E-13 7.8E-18 134.8 -0.1 55 335-396 47-101 (328)
No 1
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=100.00 E-value=5.2e-75 Score=550.82 Aligned_cols=221 Identities=50% Similarity=0.853 Sum_probs=201.9
Q ss_pred ecccccccCCChhHH-HHHHHcCCCCccEEEEeecCChhHhhccCCCceEEEEEecCChhhHHHHHHHhhhhhhhccccc
Q psy2584 69 VKRHPVNRLSTPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTIS 147 (397)
Q Consensus 69 ~~~~~i~~ESnPeVF-~ll~~LGv~~~~~f~DVysLD~dlLa~iP~PV~alIfLFP~~~~~e~~~~~~~~~~~~~~~~i~ 147 (397)
+.|+++ ||||+|| +|+++|||+++|+|+||||||+|+|++||+|||||||||||+++|++.|..+++++.
T Consensus 4 ~~w~pl--ESnP~Vft~l~~~lGv~~~~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~~~~~------- 74 (230)
T 1xd3_A 4 QRWLPL--EANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIK------- 74 (230)
T ss_dssp CBCCCC--BCCHHHHHHHHHHTTBCTTEEEEECCCSSHHHHTTSCSCEEEEEEEEECCHHHHHHHHHHHHHHH-------
T ss_pred Cccccc--cCCHHHHHHHHHHcCCCceEEEEEeccCCHHHHhhCCCCceEEEEEEECChhhhhhhhhhhcccc-------
Confidence 457666 9999999 999999999669999999999999999999999999999999999988776543321
Q ss_pred hhhhhhhhhhccccccchhhhhhhhhhhhhHHHHhhhccCCCCceEEEeecccchhHHHHHHHhhccCCCccccCCc-hH
Q psy2584 148 SELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDG-KL 226 (397)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~h~y~~~~ke~~~~~~~~~~~~~~~v~f~KQtI~NACGTiALLHaLlN~~~~i~l~~~-~L 226 (397)
..++..+++|||+||||+||||||||||+|+|+++.+.|.+| .|
T Consensus 75 -----------------------------------~~~~~~~~~v~f~kQtI~NACgT~AlLh~l~N~~~~i~l~~gs~L 119 (230)
T 1xd3_A 75 -----------------------------------SQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTL 119 (230)
T ss_dssp -----------------------------------HHCCCCCTTCCCCCCCSBTCHHHHHHHHHHHTTGGGCCBCTTCHH
T ss_pred -----------------------------------cccCCCCcCcEEeehhccccHHHHHHHHHHHcCcCCcccCCCchH
Confidence 123456789999999999999999999999999877888555 59
Q ss_pred HHHHHHhcCCChHHHHhhhccChHHHHHHHhhcccCCCCCCCCCCCCCceEEEEEeeCCeEEEecCCCCCceeecCCCCC
Q psy2584 227 KSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPE 306 (397)
Q Consensus 227 ~~f~~~t~~lsP~~Rg~~L~ns~~l~~aHns~A~~g~T~~p~~~~~v~~HFVafV~~~G~LyELDG~k~gPI~~G~~~~d 306 (397)
++|+++|++|+|++||++|+|++.|+++||++|++|+|++|+.+++++|||||||++||+||||||||+|||+||+++++
T Consensus 120 ~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~~p~~~~~~~~HFI~fV~~~G~LyELDG~k~gPi~~G~~~~~ 199 (230)
T 1xd3_A 120 KKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDE 199 (230)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTCHHHHHHHHHHHTCSSSCCCCTTSCCCEEEEEEEEETTEEEEECTTSSSCEEEEECCTT
T ss_pred HHHHHHccCCCHHHHHHHhcCcHHHHHHHHHHhccCCCCCCCCCCCcCeEEEEEEeeCCEEEEccCCCCCCeecCCCCcH
Confidence 99999999999999999999999999999999999999988878899999999999999999999999999999999989
Q ss_pred chHHHHHHHHHHHHhcCCCCceeeeec
Q psy2584 307 TLLADATQVAKKYMQRDPDNGRKGFPI 333 (397)
Q Consensus 307 ~~l~~a~~vIq~~m~~~~~~vrFslpi 333 (397)
+|+++|+++||+||+++++++|||+..
T Consensus 200 ~~l~~a~~vi~~~~~~~~~~i~FslmA 226 (230)
T 1xd3_A 200 TLLEDAIEVCKKFMERDPDELRFNAIA 226 (230)
T ss_dssp THHHHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 999999999999999999999999864
No 2
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=100.00 E-value=6.7e-74 Score=542.60 Aligned_cols=217 Identities=43% Similarity=0.743 Sum_probs=197.3
Q ss_pred eecccccccCCChhHH-HHHHHcCCCCccEEEEeecCChhHhhccCCCceEEEEEecCChhhHHHHHHHhhhhhhhcccc
Q psy2584 68 VVKRHPVNRLSTPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTI 146 (397)
Q Consensus 68 ~~~~~~i~~ESnPeVF-~ll~~LGv~~~~~f~DVysLD~dlLa~iP~PV~alIfLFP~~~~~e~~~~~~~~~~~~~~~~i 146 (397)
.|.|+++ ||||+|| +|+++|||+++|+|+||||||+|+|+|||+|||||||||||+++|++.|..++++.
T Consensus 5 ~~~w~pL--ESnP~Vft~l~~~LGv~~~~~f~DVysLD~dlL~~lP~Pv~alIfLFP~~~~~e~~r~~~~~~~------- 75 (228)
T 4dm9_A 5 SMQLKPM--EINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEEL------- 75 (228)
T ss_dssp -CCCCCC--CCSHHHHHHHHHHTTBCSSEEEEEECCSSHHHHHTSCSCEEEEEEEEECCHHHHHHHHHHHHHH-------
T ss_pred CCceeec--cCCHHHHHHHHHHcCCCCceEEEEeecCCHHHHhhCCCCceEEEEEecccchhhhhhhhhhccc-------
Confidence 3667777 9999999 99999999977999999999999999999999999999999999998876554321
Q ss_pred chhhhhhhhhhccccccchhhhhhhhhhhhhHHHHhhhccCCCCceEEEeecccchhHHHHHHHhhccCCCccccCCc-h
Q psy2584 147 SSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDG-K 225 (397)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~~~~h~y~~~~ke~~~~~~~~~~~~~~~v~f~KQtI~NACGTiALLHaLlN~~~~i~l~~~-~ 225 (397)
.++..+++||||||||+||||||||||+|+|+++.+.+..| .
T Consensus 76 -------------------------------------~~~~~~~~v~f~kQtI~NACgt~ALLh~l~N~~~~i~i~~gs~ 118 (228)
T 4dm9_A 76 -------------------------------------KGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSV 118 (228)
T ss_dssp -------------------------------------TTTTSCTTSCCCCCCSTTCHHHHHHHHHHHTTTTTCCBCTTCH
T ss_pred -------------------------------------cccCCCcccEEeeeeccccHHHHHHHHHHhcCccccccCCCcH
Confidence 12345678999999999999999999999999876765555 5
Q ss_pred HHHHHHHhcCCChHHHHhhhccChHHHHHHHhhcccCCCCCCCCCCCCCceEEEEEeeCCeEEEecCCCCCceeecCCCC
Q psy2584 226 LKSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSP 305 (397)
Q Consensus 226 L~~f~~~t~~lsP~~Rg~~L~ns~~l~~aHns~A~~g~T~~p~~~~~v~~HFVafV~~~G~LyELDG~k~gPI~~G~~~~ 305 (397)
|++|+++|++|+|++||++|+|+++|+++||++|++|+|+ .+++++|||||||++||+||||||||+|||+||++++
T Consensus 119 L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~---~~~~~~~HFIafV~~dG~LyELDG~k~gPi~~G~~~~ 195 (228)
T 4dm9_A 119 LKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSE 195 (228)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHTCHHHHHHHHHHHTTSSCC---CCTTCCEEEEEEEEETTEEEEECTTSSSCEEEEECCG
T ss_pred HHHHHHHhccCCHHHHHHHHhcCHHHHHHHHHHhccCCCC---CCCCCCceEEEEEEeCCeEEEcCCCCCCCceeccCCc
Confidence 9999999999999999999999999999999999999997 4678999999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHHHhcCCCCceeeeec
Q psy2584 306 ETLLADATQVAKKYMQRDPDNGRKGFPI 333 (397)
Q Consensus 306 d~~l~~a~~vIq~~m~~~~~~vrFslpi 333 (397)
++|+++|+++||+||++++++++||+..
T Consensus 196 ~~~l~~a~~vi~~~m~~~~~ei~FslmA 223 (228)
T 4dm9_A 196 DTLLKDAAKVCREFTEREQGEVRFSAVA 223 (228)
T ss_dssp GGHHHHHHHHHHHHHHHSCSCCCCEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 8999999999999999989999999864
No 3
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=100.00 E-value=9.2e-72 Score=529.17 Aligned_cols=214 Identities=32% Similarity=0.573 Sum_probs=184.1
Q ss_pred cccccccCCChhHH-HHHHHcCCCCccEEEEeecCChhHhhccCCCceEEEEEecCChhhHHHHHHHhhhhhhhccccch
Q psy2584 70 KRHPVNRLSTPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTISS 148 (397)
Q Consensus 70 ~~~~i~~ESnPeVF-~ll~~LGv~~~~~f~DVysLD~dlLa~iP~PV~alIfLFP~~~~~e~~~~~~~~~~~~~~~~i~~ 148 (397)
.|+++ ||||+|| +|+++|||++ |+|+||||||+|+|++||+|||||||||||+++|++. .++++.+.
T Consensus 6 ~w~pl--ESnP~Vft~l~~~lGv~~-~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~-~~~~~~~~-------- 73 (232)
T 2wdt_A 6 IWTPL--ESNPDSLYLYSCKLGQSK-LKFVDIYGFNNDLLDMIPQPVQAVIFLYPVNDNIVSE-NNTNDKHN-------- 73 (232)
T ss_dssp CCCCC--BCCHHHHHHHHHHHTCCS-EEEEECCCSSHHHHTTSCSCCCEEEEEEECC-----------------------
T ss_pred cceee--cCCHHHHHHHHHHhCCCC-eEEEEcccCCHHHHhhCCCCceEEEEEEECCcccchh-hccccccc--------
Confidence 46655 9999999 9999999994 9999999999999999999999999999999998876 43322111
Q ss_pred hhhhhhhhhccccccchhhhhhhhhhhhhHHHHhhhccCCCCceEEEeecccchhHHHHHHHhhccCCCccccCCc-hHH
Q psy2584 149 ELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDG-KLK 227 (397)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~~h~y~~~~ke~~~~~~~~~~~~~~~v~f~KQtI~NACGTiALLHaLlN~~~~i~l~~~-~L~ 227 (397)
....+++|||+||||+||||||||||+|+|+++.+.+..| .|+
T Consensus 74 ------------------------------------~~~~~~~v~f~kQtI~NACgT~AlLh~l~N~~~~i~l~~gs~L~ 117 (232)
T 2wdt_A 74 ------------------------------------LKENFDNVWFIKQYIPNSCGTIALLHLYGNLRNKFELDKDSVLD 117 (232)
T ss_dssp ----------------------------------------CTTSCCCCCCSTTCHHHHHHHHHHHHSTTTSCCCTTSHHH
T ss_pred ------------------------------------cccCCCCcEEeeeccccchHHHHHHHHHhcCccccccCCChHHH
Confidence 0124578999999999999999999999999876766555 599
Q ss_pred HHHHHhcCCChHHHHhhhccChHHHHHHHhhcccCCCCCCCCCCCCCceEEEEEeeCCeEEEecCCCCCceeecCCCCCc
Q psy2584 228 SFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPET 307 (397)
Q Consensus 228 ~f~~~t~~lsP~~Rg~~L~ns~~l~~aHns~A~~g~T~~p~~~~~v~~HFVafV~~~G~LyELDG~k~gPI~~G~~~~d~ 307 (397)
+|+++|++|+|++||++|+|++.|+++||++ +|||++|+.+++++|||||||++||+||||||||+|||+||++++++
T Consensus 118 ~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~--~g~t~~p~~~~~v~~HFI~fV~~~G~LyELDG~k~gPi~~G~~~~~~ 195 (232)
T 2wdt_A 118 DFFNKVNEMSAEKRGQELKNNKSIENLHHEF--CGQVENRDDILDVDTHFIVFVQIEGKIIELDGRKDHPTVHCFTNGDN 195 (232)
T ss_dssp HHHHHTTTSCHHHHHHHHHHCHHHHHHHTTS--SCCCCSHHHHHCCCEEEEEEEESSSEEEEECTTSSSCEEEEECCGGG
T ss_pred HHHHHccCCCHHHHHHHhhccHHHHHHHHhc--cCccCCCCCCCCCCeEEEEEEEeCCEEEEccCCCCCCcccCCCCcHh
Confidence 9999999999999999999999999999999 89998876678899999999999999999999999999999999889
Q ss_pred hHHHHHHHH-HHHHhcCCCCceeeeec
Q psy2584 308 LLADATQVA-KKYMQRDPDNGRKGFPI 333 (397)
Q Consensus 308 ~l~~a~~vI-q~~m~~~~~~vrFslpi 333 (397)
|+++|+++| |+||+++++++|||+..
T Consensus 196 ~l~~a~~vi~~~~m~~~~~~i~FslmA 222 (232)
T 2wdt_A 196 FLYDTGKIIQDKFIEKCKDDLRFSALA 222 (232)
T ss_dssp HHHHHHHHHHHHTTTTCSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 999999999 99999999999999965
No 4
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=100.00 E-value=6.1e-70 Score=517.38 Aligned_cols=211 Identities=27% Similarity=0.518 Sum_probs=181.6
Q ss_pred cccccccCCChhHH-HHHHHcCCCCccEEEEeecCC-hhHhhccCCCceEEEEEecCChhhHHHHHHHhhhhhhhccccc
Q psy2584 70 KRHPVNRLSTPGSL-AFLVALGVPSKWQIVDVYGTD-PDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTIS 147 (397)
Q Consensus 70 ~~~~i~~ESnPeVF-~ll~~LGv~~~~~f~DVysLD-~dlLa~iP~PV~alIfLFP~~~~~e~~~~~~~~~~~~~~~~i~ 147 (397)
.|+++ ||||+|| +|+++|||+++|+|+|||||| +|+|++||+|||||||||||+++|++.+..++
T Consensus 7 ~w~pl--ESnP~Vft~l~~~lGv~~~~~f~DVysLdd~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~----------- 73 (235)
T 1cmx_A 7 AVVPI--ESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQI----------- 73 (235)
T ss_dssp BCCCE--ECCHHHHHHHHHHHTBCTTEEEEEECCSSCTTGGGSSCSSCCEEEEEEECC----------------------
T ss_pred ceeee--cCCHHHHHHHHHHcCCCCCcEEEEcccCCCHHHHhcCCCCcEEEEEEEeCCccccccccccc-----------
Confidence 45555 9999999 999999997799999999995 59999999999999999999998876654321
Q ss_pred hhhhhhhhhhccccccchhhhhhhhhhhhhHHHHhhhccCCCCceEEEeecccchhHHHHHHHhhccCCCccccCCchHH
Q psy2584 148 SELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGKLK 227 (397)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~h~y~~~~ke~~~~~~~~~~~~~~~v~f~KQtI~NACGTiALLHaLlN~~~~i~l~~~~L~ 227 (397)
..+++|||+||||+||||||||||+|+|+...+.++ +.|+
T Consensus 74 ---------------------------------------~~~~~v~f~kQtI~NACgT~AlLh~l~N~~~~i~~g-s~L~ 113 (235)
T 1cmx_A 74 ---------------------------------------TSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPG-SDLD 113 (235)
T ss_dssp -------------------------------------------CCCEECCCSBTCHHHHHHHHHHHTCGGGBCTT-SHHH
T ss_pred ---------------------------------------ccccCcEeehhhhcccHHHHHHHHHHhccCccCCCC-cHHH
Confidence 124679999999999999999999999983334443 4599
Q ss_pred HHHHHhcCCChHHHHh--hhccChHHHHHHH--hhcccCCCCCCCCCCCCCceEEEEEeeCCeEEEecCCC-CCceeecC
Q psy2584 228 SFLDEAKDLSPERRGK--LLDENQSISDVHK--VIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRK-GFPINHGA 302 (397)
Q Consensus 228 ~f~~~t~~lsP~~Rg~--~L~ns~~l~~aHn--s~A~~g~T~~p~~~~~v~~HFVafV~~~G~LyELDG~k-~gPI~~G~ 302 (397)
+|+++|++|+|++||+ +|+|++.|+.+|| ++|++|+|++|+.+++++|||||||++||+|||||||| +|||+||+
T Consensus 114 ~f~~~t~~~~p~~Rg~~~~L~n~~~i~~aHn~~s~A~~g~t~~p~~~~~~~~HFI~fV~~~G~LyELDG~k~~gPi~~G~ 193 (235)
T 1cmx_A 114 NFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFELDGRNLSGPLYLGK 193 (235)
T ss_dssp HHHHHHHHHTSCSSEECSHHHHHHHHHHHHTCHHHHHCSSSCCCCTTSCCSEEEEEEEECSSEEEEECTTCTTCCEEEEE
T ss_pred HHHHHhcCCCHHHhcchhhccccHHHHHHhChhhhhcccCCCCCCCCCCCCeEEEEEEeeCCEEEEecCCCCCCCeEccC
Confidence 9999999999999999 9999999999999 99999999998878899999999999999999999999 99999999
Q ss_pred CC--CCchHH-HHHHH-HHHHHhcCCC--Cceeeeec
Q psy2584 303 TS--PETLLA-DATQV-AKKYMQRDPD--NGRKGFPI 333 (397)
Q Consensus 303 ~~--~d~~l~-~a~~v-Iq~~m~~~~~--~vrFslpi 333 (397)
++ +++|++ +++++ ||+||+++++ +++||+..
T Consensus 194 ~~~~~~~~l~~~a~~v~i~~~m~~~~~~~~i~FslmA 230 (235)
T 1cmx_A 194 SDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLG 230 (235)
T ss_dssp CCTTCSSGGGCHHHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred CCCCcchhhHHHHHHHHHHHHHHhccccCCceEEEEE
Confidence 98 789999 99999 9999998764 99999864
No 5
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=100.00 E-value=1.9e-68 Score=506.78 Aligned_cols=210 Identities=25% Similarity=0.379 Sum_probs=178.5
Q ss_pred cccccCCChhHH-HHHHHcCCCCccEEEEeecCChhHhhccCCCceEEEEEecCChhhHHHHHHHhhhhhhhccccchhh
Q psy2584 72 HPVNRLSTPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTISSEL 150 (397)
Q Consensus 72 ~~i~~ESnPeVF-~ll~~LGv~~~~~f~DVysLD~dlLa~iP~PV~alIfLFP~~~~~e~~~~~~~~~~~~~~~~i~~~~ 150 (397)
.|++|||||+|| +|+++|||+ +|+|+||||||+|+|+++ +|||||||||||++.++...+
T Consensus 12 ~w~pLESnP~Vft~l~~~LGv~-~~~f~DVysLD~~~L~~l-~Pv~alIfLFp~~~~~~~~~~----------------- 72 (233)
T 3rii_A 12 EWCLMESDPGVFTELIKGFGCR-GAQVEEIWSLEPENFEKL-KPVHGLIFLFKWQPGEEPAGS----------------- 72 (233)
T ss_dssp CSCCCCCCHHHHHHHHHHTTCB-SEEEEECSCSSTTTTTTT-CSEEEEEEEECCCTTCCCSSE-----------------
T ss_pred CeeeecCCHHHHHHHHHHhCCC-CcEEEEcccCCHHHHhhc-cCceEEEEEEeccchhhhccC-----------------
Confidence 344459999999 999999999 799999999999999999 999999999999876542100
Q ss_pred hhhhhhhccccccchhhhhhhhhhhhhHHHHhhhccCCCCceEEEeecccchhHHHHHHHhhccCCC-ccccCCchHHHH
Q psy2584 151 FFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLN-NVKLEDGKLKSF 229 (397)
Q Consensus 151 ~~~~~~~~~~~g~~~~~h~y~~~~ke~~~~~~~~~~~~~~~v~f~KQtI~NACGTiALLHaLlN~~~-~i~l~~~~L~~f 229 (397)
+ ..+..+++|||+||||+||||||||||+|+|++. .|.++ +.|++|
T Consensus 73 -------------------~-------------~~~~~~~~v~f~kQtI~NACgT~ALLh~l~N~~~~~i~~g-s~L~~f 119 (233)
T 3rii_A 73 -------------------V-------------VQDSRLDTIFFAKQVINNASATQAIVSVLLNCTHQDVHLG-ETLSEF 119 (233)
T ss_dssp -------------------E-------------CCSGGGGTSCCCCCCCGGGHHHHHHHHHHHTCCCTTCBCC-HHHHHH
T ss_pred -------------------c-------------cccCCcccceEeehhccccHHHHHHHHHHHcCCcccccCC-cHHHHH
Confidence 0 0112346899999999999999999999999873 35554 459999
Q ss_pred HHHhcCCChHHHHhhhccChHHHHHHHhhcccCCCCCC---CCCCCCCceEEEEEeeCCeEEEecCCCCCceeecCCCCC
Q psy2584 230 LDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPP---EDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPE 306 (397)
Q Consensus 230 ~~~t~~lsP~~Rg~~L~ns~~l~~aHns~A~~g~T~~p---~~~~~v~~HFVafV~~~G~LyELDG~k~gPI~~G~~~~d 306 (397)
+++|++|+|++||++|+|+++|+++||++|++|+++.+ ..+++++|||||||++||+||||||||+|||+||+++++
T Consensus 120 ~~~t~~~~p~~Rg~~L~n~~~i~~aH~s~A~~g~~~~dt~~~~~~~~~~HFIafV~~dG~LyELDG~k~gPi~~G~~~~e 199 (233)
T 3rii_A 120 KEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQD 199 (233)
T ss_dssp HHHHTTCCHHHHHHHHHTCHHHHHHHHHTSCC----------CCGGGGSEEEEEEEETTEEEEECTTSSSCEEEEECCSS
T ss_pred HHHhcCCCHHHHHHHHhcCHHHHHHHHHHhhcCCccCCCCCCCccCcceeEEEEEEeCCeEEEcCCCCCCCcccCCCCch
Confidence 99999999999999999999999999999999964432 346678999999999999999999999999999999989
Q ss_pred chHHHHHHHHHHHHhcC-CCCceeeeec
Q psy2584 307 TLLADATQVAKKYMQRD-PDNGRKGFPI 333 (397)
Q Consensus 307 ~~l~~a~~vIq~~m~~~-~~~vrFslpi 333 (397)
+|+++|+++||+||+++ ++++|||+..
T Consensus 200 ~~l~~a~~vi~~ri~~~~~~ei~FslmA 227 (233)
T 3rii_A 200 DWISAVRPVIEKRIQKYSEGEIRFNLMA 227 (233)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999999999985 5789999864
No 6
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=100.00 E-value=6.1e-66 Score=509.75 Aligned_cols=210 Identities=26% Similarity=0.419 Sum_probs=174.6
Q ss_pred ecccccccCCChhHH-HHHHHcCCCCccEEEEeecCChhHhhccCCCceEEEEEecCChhhHHHHHHHhhhhhhhccccc
Q psy2584 69 VKRHPVNRLSTPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTIS 147 (397)
Q Consensus 69 ~~~~~i~~ESnPeVF-~ll~~LGv~~~~~f~DVysLD~dlLa~iP~PV~alIfLFP~~~~~e~~~~~~~~~~~~~~~~i~ 147 (397)
..|+++ ||||+|| .|+++|||+ +|+|+||||||+|+|+++ +|||||||||||++.++....
T Consensus 6 ~~W~pL--ESnP~Vft~ll~~LGv~-~~~f~DVysLD~e~L~~l-~Pv~alIfLFp~~~~~e~~~~-------------- 67 (328)
T 3ihr_A 6 GEWCLM--ESDPGVFTELIKGFGCR-GAQVEEIWSLEPENFEKL-KPVHGLIFLFKWQPGEEPAGS-------------- 67 (328)
T ss_dssp -CCCCC--CCCHHHHHHHHHHHTCB-SEEEEECCCCCHHHHHTT-CSEEEEEEEEECCSCCCCSSE--------------
T ss_pred Cceeee--cCCHHHHHHHHHHcCCC-ceEEEEeccCCHHHHhcc-cCceEEEEEEecCchhhhccc--------------
Confidence 356666 9999999 999999999 799999999999999999 999999999999876532100
Q ss_pred hhhhhhhhhhccccccchhhhhhhhhhhhhHHHHhhhccCCCCceEEEeecccchhHHHHHHHhhccCC-CccccCCchH
Q psy2584 148 SELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNL-NNVKLEDGKL 226 (397)
Q Consensus 148 ~~~~~~~~~~~~~~g~~~~~h~y~~~~ke~~~~~~~~~~~~~~~v~f~KQtI~NACGTiALLHaLlN~~-~~i~l~~~~L 226 (397)
+ .+...+++||||||||+||||||||||+|+|++ +.|.++ +.|
T Consensus 68 ----------------------~-------------~~~~~~~~v~f~kQtI~NACGT~ALLh~l~N~~~~~I~~G-s~L 111 (328)
T 3ihr_A 68 ----------------------V-------------VQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLG-ETL 111 (328)
T ss_dssp ----------------------E-------------CCSTTTTTSCCCCCCSGGGHHHHHHHHHHHTCCCTTCBCH-HHH
T ss_pred ----------------------c-------------cccCcccccchHHHhccchHHHHHHHHHHHcCCcccCCCC-cHH
Confidence 0 112234689999999999999999999999986 446554 359
Q ss_pred HHHHHHhcCCChHHHHhhhccChHHHHHHHhhcccC----CCCCCCCCCCCCceEEEEEeeCCeEEEecCCCCCceeecC
Q psy2584 227 KSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEG----QTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGA 302 (397)
Q Consensus 227 ~~f~~~t~~lsP~~Rg~~L~ns~~l~~aHns~A~~g----~T~~p~~~~~v~~HFVafV~~~G~LyELDG~k~gPI~~G~ 302 (397)
++|+++|.+|+|++||++|+|++.|+.+||++|++| +|+++ .+++++|||||||++||+||||||||+|||+||+
T Consensus 112 ~~f~~~t~~l~P~~Rg~~L~ns~~i~~aHns~A~~g~~~~dt~~~-~~d~~~~HFIafV~~dG~LyELDG~k~gPI~hG~ 190 (328)
T 3ihr_A 112 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTS-AKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGA 190 (328)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTCHHHHHHHHTTC------------------CEEEEEEEEETTEEEEEETTSSSCEEEEE
T ss_pred HHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhccCCccCCCCCC-CCcCcceeEEEEEeeCCEEEEcCCCCCCCcccCC
Confidence 999999999999999999999999999999999998 56554 4567889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhcC-CCCceeeeec
Q psy2584 303 TSPETLLADATQVAKKYMQRD-PDNGRKGFPI 333 (397)
Q Consensus 303 ~~~d~~l~~a~~vIq~~m~~~-~~~vrFslpi 333 (397)
+++++|+++|+++||+||+++ +++++||+..
T Consensus 191 ~~~e~~l~~a~~vi~~ri~~y~~~eirFslmA 222 (328)
T 3ihr_A 191 CNQDDWISAVRPVIEKRIQKYSEGEIRFNLMA 222 (328)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCchhHHHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 998899999999999999985 5789999965
No 7
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=99.69 E-value=8.5e-18 Score=159.10 Aligned_cols=64 Identities=42% Similarity=0.610 Sum_probs=56.5
Q ss_pred ecCCCCCccchhcccchhHHHHHHHHHHHHHhhccCCCCcceeecccccchhhHHHHHHHhhcCCC
Q psy2584 332 PINHGATSPETLLADATQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLN 397 (397)
Q Consensus 332 pi~~pa~a~~~lfP~t~~~e~~r~~e~~~~~~~g~~~~~~v~~~KQtI~NACGtiALLHalaN~~~ 397 (397)
.++.|+.+.++|||.+++|+++|++++++. .++..+++||||||||+||||||||||+|+|+++
T Consensus 46 ~lP~Pv~alIfLFP~~~~~e~~r~~~~~~~--~~~~~~~~v~f~kQtI~NACgt~ALLh~l~N~~~ 109 (228)
T 4dm9_A 46 SVPAPACALLLLFPLTAQHENFRKKQIEEL--KGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQD 109 (228)
T ss_dssp TSCSCEEEEEEEEECCHHHHHHHHHHHHHH--TTTTSCTTSCCCCCCSTTCHHHHHHHHHHHTTTT
T ss_pred hCCCCceEEEEEecccchhhhhhhhhhccc--cccCCCcccEEeeeeccccHHHHHHHHHHhcCcc
Confidence 457999999999999999999998776654 4556788999999999999999999999999864
No 8
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=99.68 E-value=1e-17 Score=158.68 Aligned_cols=65 Identities=38% Similarity=0.627 Sum_probs=58.7
Q ss_pred ecCCCCCccchhcccchhHHHHHHHHHHHHHhhccCCCCcceeecccccchhhHHHHHHHhhcCC
Q psy2584 332 PINHGATSPETLLADATQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNL 396 (397)
Q Consensus 332 pi~~pa~a~~~lfP~t~~~e~~r~~e~~~~~~~g~~~~~~v~~~KQtI~NACGtiALLHalaN~~ 396 (397)
.++.|+.+.++|||.++.||++|+++++++..++++.+++||||||||+||||||||||+|+|++
T Consensus 44 ~lP~Pv~alIfLFp~~~~~e~~r~~~~~~~~~~~~~~~~~v~f~kQtI~NACgT~AlLh~l~N~~ 108 (230)
T 1xd3_A 44 MVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNK 108 (230)
T ss_dssp TSCSCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCTTCCCCCCCSBTCHHHHHHHHHHHTTG
T ss_pred hCCCCceEEEEEEECChhhhhhhhhhhcccccccCCCCcCcEEeehhccccHHHHHHHHHHHcCc
Confidence 35789999999999999999999988777666677778899999999999999999999999975
No 9
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=99.56 E-value=6.2e-16 Score=146.71 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=41.1
Q ss_pred ecCCCCCccchhcccchhHHHHHHHHHHHHHhhccCCCCcceeecccccchhhHHHHHHHhhcCC
Q psy2584 332 PINHGATSPETLLADATQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNL 396 (397)
Q Consensus 332 pi~~pa~a~~~lfP~t~~~e~~r~~e~~~~~~~g~~~~~~v~~~KQtI~NACGtiALLHalaN~~ 396 (397)
.++.|+.+.++|||.++.|+++ +++++.+... ..+++||||||||+||||||||||+|+|++
T Consensus 44 ~lP~Pv~alIfLFp~~~~~e~~-~~~~~~~~~~--~~~~~v~f~kQtI~NACgT~AlLh~l~N~~ 105 (232)
T 2wdt_A 44 MIPQPVQAVIFLYPVNDNIVSE-NNTNDKHNLK--ENFDNVWFIKQYIPNSCGTIALLHLYGNLR 105 (232)
T ss_dssp TSCSCCCEEEEEEECC---------------------CTTSCCCCCCSTTCHHHHHHHHHHHHST
T ss_pred hCCCCceEEEEEEECCcccchh-hccccccccc--cCCCCcEEeeeccccchHHHHHHHHHhcCc
Confidence 3578999999999999999998 5554433311 346789999999999999999999999975
No 10
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=99.55 E-value=1e-15 Score=145.54 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=38.5
Q ss_pred cCCCCCccchhcccchhHHHHHHHHHHHHHhhccCCCCcceeecccccchhhHHHHHHHhhcC
Q psy2584 333 INHGATSPETLLADATQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANN 395 (397)
Q Consensus 333 i~~pa~a~~~lfP~t~~~e~~r~~e~~~~~~~g~~~~~~v~~~KQtI~NACGtiALLHalaN~ 395 (397)
++.|+.+.++|||.++.|++.|+++++ .+++||||||||+||||||||||+|+|+
T Consensus 48 lP~Pv~alIfLFp~~~~~e~~r~~~~~--------~~~~v~f~kQtI~NACgT~AlLh~l~N~ 102 (235)
T 1cmx_A 48 LPRPVKAIVLLFPINEDRKSSTSQQIT--------SSYDVIWFKQSVKNACGLYAILHSLSNN 102 (235)
T ss_dssp SCSSCCEEEEEEECC-----------------------CCCEECCCSBTCHHHHHHHHHHHTC
T ss_pred CCCCcEEEEEEEeCCcccccccccccc--------cccCcEeehhhhcccHHHHHHHHHHhcc
Confidence 578999999999999999998877652 3578999999999999999999999997
No 11
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=99.36 E-value=4.7e-14 Score=133.93 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=42.7
Q ss_pred CCCCccchhcccchhHHHHHHHHHHHHHhhccCCCCcceeecccccchhhHHHHHHHhhcCC
Q psy2584 335 HGATSPETLLADATQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNL 396 (397)
Q Consensus 335 ~pa~a~~~lfP~t~~~e~~r~~e~~~~~~~g~~~~~~v~~~KQtI~NACGtiALLHalaN~~ 396 (397)
.|+.+.++|||.++.++..+ ++.....+++||||||||+||||||||||+|+|++
T Consensus 52 ~Pv~alIfLFp~~~~~~~~~-------~~~~~~~~~~v~f~kQtI~NACgT~ALLh~l~N~~ 106 (233)
T 3rii_A 52 KPVHGLIFLFKWQPGEEPAG-------SVVQDSRLDTIFFAKQVINNASATQAIVSVLLNCT 106 (233)
T ss_dssp CSEEEEEEEECCCTTCCCSS-------EECCSGGGGTSCCCCCCCGGGHHHHHHHHHHHTCC
T ss_pred cCceEEEEEEeccchhhhcc-------CccccCCcccceEeehhccccHHHHHHHHHHHcCC
Confidence 78899999999887654311 11112234689999999999999999999999975
No 12
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=99.29 E-value=2.3e-13 Score=134.83 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=43.5
Q ss_pred CCCCccchhcccchhHHHHHHHHHHHHHhhccCCCCcceeecccccchhhHHHHHHHhhcCC
Q psy2584 335 HGATSPETLLADATQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNL 396 (397)
Q Consensus 335 ~pa~a~~~lfP~t~~~e~~r~~e~~~~~~~g~~~~~~v~~~KQtI~NACGtiALLHalaN~~ 396 (397)
.|+.+.++|||.++.++... .+.+...+++||||||||+||||||||||+|+|++
T Consensus 47 ~Pv~alIfLFp~~~~~e~~~-------~~~~~~~~~~v~f~kQtI~NACGT~ALLh~l~N~~ 101 (328)
T 3ihr_A 47 KPVHGLIFLFKWQPGEEPAG-------SVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCT 101 (328)
T ss_dssp CSEEEEEEEEECCSCCCCSS-------EECCSTTTTTSCCCCCCSGGGHHHHHHHHHHHTCC
T ss_pred cCceEEEEEEecCchhhhcc-------cccccCcccccchHHHhccchHHHHHHHHHHHcCC
Confidence 89999999999887654211 12222345789999999999999999999999975
Done!