RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2584
(397 letters)
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 212 bits (541), Expect = 7e-68
Identities = 110/253 (43%), Positives = 146/253 (57%), Gaps = 44/253 (17%)
Query: 78 STPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQE 136
+ P FL LG+ WQ VDVYG DP++L++VP+PV A+++LFP TEKYE E+E
Sbjct: 10 ANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEE 69
Query: 137 KEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMK 196
++I+ +GQ ++S ++FMKQ + NACGTI LIH+
Sbjct: 70 EKIKSQGQDVTSSVYFMKQTISNACGTIGLIHA--------------------------- 102
Query: 197 QFVHNACGTIALIHSVANNLNNVKLEDGK-LKSFLDEAKDLSPERRGKLLDENQSISDVH 255
+ANN + + E G LK FL+E+ +SPE R + L+ +I H
Sbjct: 103 ---------------IANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTH 147
Query: 256 KVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQV 315
+ A EGQT P E V HF+ALVH +G LYELDGRK FPINHG TS ETLL DA +V
Sbjct: 148 ETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEV 207
Query: 316 AKKYMQRDPDNGR 328
KK+M+RDPD R
Sbjct: 208 CKKFMERDPDELR 220
Score = 59.1 bits (143), Expect = 9e-11
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 348 TQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLN 397
+YE E+E++I+ +GQ ++S ++FMKQ + NACGTI LIH++ANN +
Sbjct: 59 EKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKD 108
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase
isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 201 bits (512), Expect = 1e-63
Identities = 91/253 (35%), Positives = 133/253 (52%), Gaps = 49/253 (19%)
Query: 78 STPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQE 136
P L L LGV +W+ VDV G + + L VP P AL++LFP T ++E K+Q
Sbjct: 8 INPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQI 67
Query: 137 KEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMK 196
+E+ KGQ +S +++FMK
Sbjct: 68 EEL--------------------------------------------KGQEVSPKVYFMK 83
Query: 197 QFVHNACGTIALIHSVANNLNNVKLEDGKL-KSFLDEAKDLSPERRGKLLDENQSISDVH 255
Q + N+CGTI LIH+VANN + + EDG + K FL E + +SPE R K ++N++I H
Sbjct: 84 QTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAH 143
Query: 256 KVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQV 315
+AQEGQ + V +HF+ + +G LYELDGR FP+NHGA+S +TLL DA +V
Sbjct: 144 DAVAQEGQCRVDDK---VNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKV 200
Query: 316 AKKYMQRDPDNGR 328
+++ +R+ R
Sbjct: 201 CREFTEREQGEVR 213
Score = 54.9 bits (132), Expect = 2e-09
Identities = 25/48 (52%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 348 TQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANN 395
Q+E K+Q +E+ KGQ +S +++FMKQ + N+CGTI LIH+VANN
Sbjct: 57 AQHENFRKKQIEEL--KGQEVSPKVYFMKQTIGNSCGTIGLIHAVANN 102
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3
{Synthetic, based on Saccharomyces cerevisiae sequence}
Length = 229
Score = 165 bits (418), Expect = 1e-49
Identities = 59/264 (22%), Positives = 104/264 (39%), Gaps = 58/264 (21%)
Query: 78 STPGSLAFLV-ALGVPSKWQIVDVYG-TDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQ 135
S P LG+ ++W D+Y T+P++LA +P+PV A+++LFP E + +Q
Sbjct: 8 SNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQ 67
Query: 136 EKEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFM 195
S ++ +
Sbjct: 68 ITS--------------------------------------------------SYDVIWF 77
Query: 196 KQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLDEAKD-LSPERRGKLLDENQSISDV 254
KQ V NACG A++HS++NN + ++ L +FL D S + R + +Q + +V
Sbjct: 78 KQSVKNACGLYAILHSLSNNQSLLE-PGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNV 136
Query: 255 HK---VIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRK-GFPINHGATSPETLLA 310
K GQ+ PE H++ V + G ++ELDGR P+ G + P
Sbjct: 137 IKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDL 196
Query: 311 DATQVAKKYMQRDPDNGRKGFPIN 334
++ + + +N + +N
Sbjct: 197 IEQELVRVRVASYMENANEEDVLN 220
Score = 47.3 bits (112), Expect = 9e-07
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 353 HCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLN 397
E K + T S ++ + KQ V NACG A++HS++NN +
Sbjct: 55 PINEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQS 99
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional
uracil-DNA glycosylase SMUG1 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 245
Score = 30.6 bits (69), Expect = 0.29
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 189 SSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLD 231
E FF FVHN C + ++ NL L + + L+
Sbjct: 127 QPETFFKHCFVHNHC-PLIFMNHSGKNLTPTDLPKAQRDTLLE 168
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 235
Score = 28.3 bits (63), Expect = 1.3
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 14 CRDVEFLLYGGNNRLYTVHGDHLIK 38
+FL + N LY VHG K
Sbjct: 133 WSGFKFLFFHPNGYLYAVHGQQFYK 157
>d2p61a1 a.24.29.1 (A:34-152) Hypothetical protein TM1646
{Thermotoga maritima [TaxId: 2336]}
Length = 119
Score = 26.2 bits (58), Expect = 3.3
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 126 EKYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKG 185
+ +E+ +E +E+ + G + T + + Y+ KE K IE+K
Sbjct: 12 DHFEKLLEEAVEEVIDSGNELVRSP------------TPSNLKRYKNAIKEFLKLIEKKI 59
Query: 186 QTISSELFFM 195
++
Sbjct: 60 YKLAGSFDMN 69
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
{Escherichia coli [TaxId: 562]}
Length = 518
Score = 27.2 bits (60), Expect = 3.7
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 132 CKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSE 191
C+ + + + G+ + +L + Q + + G +Y++ C E + T S+
Sbjct: 395 CETAQFPLPQVGKDLFRDLKRVAQTLDSINGG----EAYQKVCDELVACFDNPDLTFSAR 450
Query: 192 LF-FMKQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLDEAKDLSPERRGKLLDENQS 250
+ M G A + N L LE + + F+ E + ERR + ++ +
Sbjct: 451 ILRSMIDTGIGGTG-KAFAEAYRNLLREEPLEILREEDFVAEREA--SERRQQEMEAADT 507
Query: 251 IS 252
Sbjct: 508 EP 509
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 26.1 bits (57), Expect = 6.0
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 220 KLEDGKLKSFLDEAKDLSPERRGKLLDENQS-ISDVHKVIAQ 260
+ D ++S + + ++ E R LL S I+DV + +
Sbjct: 134 RCTDKGVES-VFDIMEMEDEERNALLQLTDSQIADVARFCNR 174
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.399
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,508,794
Number of extensions: 71601
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 22
Length of query: 397
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,213,086
Effective search space: 376056660
Effective search space used: 376056660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)