Query psy2585
Match_columns 80
No_of_seqs 145 out of 1065
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 19:56:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0753 KatE Catalase [Inorgan 100.0 2.2E-30 4.8E-35 205.1 5.0 78 1-79 340-420 (496)
2 cd08156 catalase_clade_3 Clade 100.0 2.8E-30 6.1E-35 202.5 5.5 78 1-79 284-362 (429)
3 cd08154 catalase_clade_1 Clade 100.0 2.1E-29 4.6E-34 199.4 5.7 78 1-79 326-403 (469)
4 KOG0047|consensus 100.0 1.7E-29 3.6E-34 198.9 3.8 78 1-78 348-427 (505)
5 PLN02609 catalase 99.9 1.5E-28 3.2E-33 195.5 5.8 77 1-78 341-417 (492)
6 cd08155 catalase_clade_2 Clade 99.9 2.5E-28 5.5E-33 192.2 5.3 78 1-79 291-375 (443)
7 cd00328 catalase Catalase heme 99.9 3.5E-27 7.6E-32 185.2 5.1 67 1-68 284-350 (433)
8 PRK11249 katE hydroperoxidase 99.9 2.2E-26 4.8E-31 189.8 5.4 78 1-79 405-491 (752)
9 cd08157 catalase_fungal Fungal 99.9 9.9E-26 2.1E-30 177.5 5.5 78 1-79 300-382 (451)
10 PF00199 Catalase: Catalase; 99.9 7.9E-23 1.7E-27 157.2 0.5 60 1-61 324-383 (384)
No 1
>COG0753 KatE Catalase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.2e-30 Score=205.07 Aligned_cols=78 Identities=49% Similarity=0.700 Sum_probs=67.3
Q ss_pred CCccCCCchHHHhhccCCCCCCCCCCCCCcccccccccCCcccccCCCCCCcccCCCCCCC---ccCCCCcCCccccCce
Q psy2585 1 MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGP---QESERGRLSTFAVSGD 77 (80)
Q Consensus 1 LQgRlFsY~DtqryRlG~N~~qlPVN~P~~~~v~n~~rDG~m~~~~~~~~~nY~Pns~~~~---~~~~~~~~~~~~~~G~ 77 (80)
||||+|||+||||||||+||+|||||||+|+ |++|||||.|++....+.++|+||+++.. .+.+.+..++.+++|+
T Consensus 340 LQgRlFsY~DtqryRlG~N~~qlPvN~P~~p-~~~~qrDG~m~~~~~~g~~~y~Pn~~~~~~~~~~~~~~~~~~~~~~g~ 418 (496)
T COG0753 340 LQGRLFSYGDTQRYRLGPNYHQIPVNRPKCP-VHNNQRDGQMRMGINTGPANYEPNSFGDNPEAPEQPGFVEPPERVEGD 418 (496)
T ss_pred hhhccccchhhhHhhcCCCcccccCCCCCCc-ccccccCCccccccCCCCcccCccccccCccccccccccCCceeeccc
Confidence 8999999999999999999999999999996 99999999999884444599999999753 3345577788888887
Q ss_pred ec
Q psy2585 78 VA 79 (80)
Q Consensus 78 ~~ 79 (80)
+.
T Consensus 419 ~~ 420 (496)
T COG0753 419 KQ 420 (496)
T ss_pred hh
Confidence 64
No 2
>cd08156 catalase_clade_3 Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.
Probab=99.96 E-value=2.8e-30 Score=202.52 Aligned_cols=78 Identities=59% Similarity=0.951 Sum_probs=72.8
Q ss_pred CCccCCCchHHHhhccCCCCCCCCCCCCCcccccccccCCccccc-CCCCCCcccCCCCCCCccCCCCcCCccccCceec
Q psy2585 1 MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFN-NQGGAPNYFPNSFSGPQESERGRLSTFAVSGDVA 79 (80)
Q Consensus 1 LQgRlFsY~DtqryRlG~N~~qlPVN~P~~~~v~n~~rDG~m~~~-~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~G~~~ 79 (80)
||+|+|||+||||||||+||+|||||||+|+ ++||+|||+|+++ +.++.|||+|||++++.+.+.+.+++..++|.+.
T Consensus 284 Lq~R~faY~dt~~~Rlg~N~~qlPvN~p~~~-~~n~~rdG~m~~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~ 362 (429)
T cd08156 284 LQGRLFSYADAHRYRLGVNYHQLPVNRPKCP-VNNYQRDGAMRVDGNGGGAPNYEPNSFGGPPEDPEYAEPPLPVSGDAD 362 (429)
T ss_pred ccccccccHhhhhcCCCCCHhhCCCCCCCCC-CCCcCcCCCccccCCCCCCCcccCCCCCCCccCCCcCCCCceEeeeEE
Confidence 8999999999999999999999999999996 9999999999998 8888999999999998888888888888888764
No 3
>cd08154 catalase_clade_1 Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.96 E-value=2.1e-29 Score=199.38 Aligned_cols=78 Identities=47% Similarity=0.775 Sum_probs=73.1
Q ss_pred CCccCCCchHHHhhccCCCCCCCCCCCCCcccccccccCCcccccCCCCCCcccCCCCCCCccCCCCcCCccccCceec
Q psy2585 1 MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQESERGRLSTFAVSGDVA 79 (80)
Q Consensus 1 LQgRlFsY~DtqryRlG~N~~qlPVN~P~~~~v~n~~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~G~~~ 79 (80)
||+|+|||+||||||||+||+|||||||+|+ |+||+|||+|++.+.++.|||+|||++++.+++.+.+++.+++|.+.
T Consensus 326 Lq~R~faY~ds~r~Rlg~N~~qlPvN~p~~~-~~~~~rdG~m~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~ 403 (469)
T cd08154 326 LQGRLFSYSDTQRYRLGPNYLQLPINAPKAA-VHNNQRDGQMNYGHDTSDVNYEPSRLDGLPEAPKYPYSQPPLSGTTQ 403 (469)
T ss_pred cccccccchhHhhccCCCChhhCCCCCCCCC-CCCCCcCCCccccCCCCCCcccCCCCCCCccCCCcCCCCeeEeeeEE
Confidence 8999999999999999999999999999996 99999999999988888999999999999888888888888998764
No 4
>KOG0047|consensus
Probab=99.95 E-value=1.7e-29 Score=198.90 Aligned_cols=78 Identities=71% Similarity=1.246 Sum_probs=68.8
Q ss_pred CCccCCCchHHHhhccCCCCCCCCCCCCCcccccccccCCccccc-CCCCCCcccCCCCCCCccCCC-CcCCccccCcee
Q psy2585 1 MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFN-NQGGAPNYFPNSFSGPQESER-GRLSTFAVSGDV 78 (80)
Q Consensus 1 LQgRlFsY~DtqryRlG~N~~qlPVN~P~~~~v~n~~rDG~m~~~-~~~~~~nY~Pns~~~~~~~~~-~~~~~~~~~G~~ 78 (80)
||||||||+||||||||+||+|||||||+...++|+||||+|++. |++++|||.||++.++...++ ..+.....+|++
T Consensus 348 LQ~RlFSY~DthRHRLGpNy~QlPVNcPy~~~~~n~qrDG~Mn~~~nqg~~pNYfpn~~~~~~~~~~~~~~~~~~~~G~~ 427 (505)
T KOG0047|consen 348 LQGRLFSYPDTHRHRLGPNYLQLPVNCPYRVRAHNFQRDGPMNVNDNQGGAPNYFPNSFSGPRQQPDPVLEHTEVASGDV 427 (505)
T ss_pred heeeeeccCcccccccCCCeeecccCCCccccccccccCCceeeccCCCCCCCcCcccCCccccCCccccCCceeeecce
Confidence 899999999999999999999999999993248999999999995 999999999999998877764 666666667754
No 5
>PLN02609 catalase
Probab=99.95 E-value=1.5e-28 Score=195.49 Aligned_cols=77 Identities=43% Similarity=0.751 Sum_probs=69.8
Q ss_pred CCccCCCchHHHhhccCCCCCCCCCCCCCcccccccccCCcccccCCCCCCcccCCCCCCCccCCCCcCCccccCcee
Q psy2585 1 MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQESERGRLSTFAVSGDV 78 (80)
Q Consensus 1 LQgRlFsY~DtqryRlG~N~~qlPVN~P~~~~v~n~~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~G~~ 78 (80)
||+|+|||+||||||||+||+|||||||+|+ ++||+|||+|++++.++.|||+||++++++..+.+.++...++|.+
T Consensus 341 Lq~R~faY~ds~~~Rlg~N~~qlPvN~p~~~-~~n~~rdG~m~~~~~~~~~nY~pn~~~~~~~~~~~~~~~~~~~g~~ 417 (492)
T PLN02609 341 LQTRIFAYADTQRHRLGPNYLQLPVNAPKCA-HHNNHHEGFMNFMHRDEEVNYFPSRFDPVRHAERVPIPHPPLSGRR 417 (492)
T ss_pred cccccccchhHhhccCCCChhhCcccCCCCC-cCCCCcCCCccccCCCCCCCccCCCCCCCccCCCcCCCCceeccce
Confidence 8999999999999999999999999999996 9999999999998558899999999998877777777777777764
No 6
>cd08155 catalase_clade_2 Clade 2 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 2 catalases are mostly found in bacteria and fungi; they have a large subunit size of 75 to 84 kDa, and bind a heme d group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.95 E-value=2.5e-28 Score=192.22 Aligned_cols=78 Identities=42% Similarity=0.645 Sum_probs=66.5
Q ss_pred CCccCCCchHHHhhcc-CCCCCCCCCCCCCcccccccccCCcccccCCCCCCcccCCCCCCCcc--CC----CCcCCccc
Q psy2585 1 MKGRLFSYPDTHRHRL-GPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQE--SE----RGRLSTFA 73 (80)
Q Consensus 1 LQgRlFsY~DtqryRl-G~N~~qlPVN~P~~~~v~n~~rDG~m~~~~~~~~~nY~Pns~~~~~~--~~----~~~~~~~~ 73 (80)
||+|+|||+||||||| |+||+|||||||+|+ |+||+|||+|++++..+.|||+|||+++... +. .+.+++..
T Consensus 291 Lq~R~faY~ds~r~RlgG~N~~qlPvN~P~~~-v~n~~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~~~~~ 369 (443)
T cd08155 291 LQGRLFSYLDTQLSRLGGPNFHELPINRPVCP-VHNNQRDGHMRMTINKGRVNYFPNSLGAGPPRAASPAEGGFVHYPEK 369 (443)
T ss_pred cccccccchHhhhccCCCCChhhCccccccCC-cCCCCcCCCccccCCCCCCcccCCCCCCCCccccccccccccCCccc
Confidence 8999999999999999 799999999999996 9999999999998555699999999998432 22 45667777
Q ss_pred cCceec
Q psy2585 74 VSGDVA 79 (80)
Q Consensus 74 ~~G~~~ 79 (80)
++|.+.
T Consensus 370 ~~g~~~ 375 (443)
T cd08155 370 VEGPKI 375 (443)
T ss_pred eecceE
Confidence 888654
No 7
>cd00328 catalase Catalase heme-binding enzyme. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Most catalases exist as tetramers of 65KD subunits containing a protoheme IX group buried deep inside the structure. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.93 E-value=3.5e-27 Score=185.22 Aligned_cols=67 Identities=49% Similarity=0.794 Sum_probs=60.1
Q ss_pred CCccCCCchHHHhhccCCCCCCCCCCCCCcccccccccCCcccccCCCCCCcccCCCCCCCccCCCCc
Q psy2585 1 MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQESERGR 68 (80)
Q Consensus 1 LQgRlFsY~DtqryRlG~N~~qlPVN~P~~~~v~n~~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~~~ 68 (80)
||+|+|||+||||||||+||+|||||||+|+ ++||+|||+|++++..+.|||+|||++++.++....
T Consensus 284 Lq~R~faY~ds~~~R~g~N~~qlpvN~p~~~-~~n~~rdG~m~~~~~~~~~nY~pns~~~~~~~~~~~ 350 (433)
T cd00328 284 LQGRLFSYADTQLYRLGPNFQQLPVNRPYAP-VHNNQRDGAGNMNDNTGVPNYEPNAKDVRYPAQGAP 350 (433)
T ss_pred cccccccchhhhhcCCCCCHhhCcccCCCCC-cCCCCcCCCccccCCCCCCCccCCCCCCCCCCcccc
Confidence 8999999999999999999999999999996 999999999999844459999999999877654443
No 8
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.93 E-value=2.2e-26 Score=189.85 Aligned_cols=78 Identities=41% Similarity=0.696 Sum_probs=64.4
Q ss_pred CCccCCCchHHHhhccC-CCCCCCCCCCCCcccccccccCCcccccCCCCCCcccCCCCCC--CccCC------CCcCCc
Q psy2585 1 MKGRLFSYPDTHRHRLG-PNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG--PQESE------RGRLST 71 (80)
Q Consensus 1 LQgRlFsY~DtqryRlG-~N~~qlPVN~P~~~~v~n~~rDG~m~~~~~~~~~nY~Pns~~~--~~~~~------~~~~~~ 71 (80)
||+|+|||+|||+|||| +||+|||||||+|+ |+|+||||.|++.+..+.+||+|||+++ +.+.+ .+...+
T Consensus 405 Lq~R~fsY~dtq~~Rlgg~N~~qlpvN~p~~~-~~n~~rdG~~~~~~~~g~~~Y~pns~~~~~~~~~~~~~~~~~~~~~~ 483 (752)
T PRK11249 405 LQGRLFSYTDTQISRLGGPNFHEIPINRPTCP-YHNFQRDGMHRMTIDTGPANYEPNSINGNWPRETPPAPKRGGFESYQ 483 (752)
T ss_pred cccccccchHHhhccCCCCchhhcccccccCC-cCCCCcCCCCcccCCCCCCcccCCCCCCCCcccCcccccccCccCCC
Confidence 89999999999999997 99999999999996 9999999999998555689999999975 33332 233456
Q ss_pred cccCceec
Q psy2585 72 FAVSGDVA 79 (80)
Q Consensus 72 ~~~~G~~~ 79 (80)
..++|.+.
T Consensus 484 ~~~~g~~~ 491 (752)
T PRK11249 484 ERVEGNKV 491 (752)
T ss_pred ceeeccEE
Confidence 66777543
No 9
>cd08157 catalase_fungal Fungal catalases similar to yeast catalases A and T. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. This family of fungal catalases has a relatively small subunit size, and binds a protoheme IX (heme b) group buried deep inside the structure. Fungal catalases also bind NADPH as a second redox-active cofactor. They form tetramers; in eukaryotic cells, catalases are typically located in peroxisomes. Saccharomyces cerevisiae catalase T is found in the cytoplasm, though.
Probab=99.92 E-value=9.9e-26 Score=177.45 Aligned_cols=78 Identities=50% Similarity=0.801 Sum_probs=65.3
Q ss_pred CCccCCCchHHHhhccCCCCCCCCCCCCC-ccccccc-ccCCccccc-CCCCCCcccCCCCCCCc--cCCCCcCCccccC
Q psy2585 1 MKGRLFSYPDTHRHRLGPNYLQLPVNCPF-ATKVANY-QRDGPMAFN-NQGGAPNYFPNSFSGPQ--ESERGRLSTFAVS 75 (80)
Q Consensus 1 LQgRlFsY~DtqryRlG~N~~qlPVN~P~-~~~v~n~-~rDG~m~~~-~~~~~~nY~Pns~~~~~--~~~~~~~~~~~~~ 75 (80)
||+|+|||+|+||||+|+||+|||||||+ |+ ++|+ +|||+|+++ +.++.|||+||++++.. ......+++..++
T Consensus 300 Lq~R~~aY~ds~~~R~g~N~~qlPvN~p~~~~-~~~~~~rdG~m~~~~~~~~~~nY~p~~~~~~~~~~~~~~~~~~~~~~ 378 (451)
T cd08157 300 LQARLFSYPDAHRHRLGPNYQQLPVNRPKTSP-VYNPYQRDGPMSVNGNYGGDPNYVSSILPPTYFKKRVDADGHHENWV 378 (451)
T ss_pred hcccccchHHHHHhccCCChhhCCCCCCCcCC-CCCCcCcCCCCcccCCCCCCCCcCCCCCCCCCcccccccCCCCceee
Confidence 89999999999999999999999999999 76 7765 999999998 77899999999998743 3333455666677
Q ss_pred ceec
Q psy2585 76 GDVA 79 (80)
Q Consensus 76 G~~~ 79 (80)
|.+.
T Consensus 379 g~~~ 382 (451)
T cd08157 379 GEVV 382 (451)
T ss_pred eeeE
Confidence 7643
No 10
>PF00199 Catalase: Catalase; InterPro: IPR011614 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. Based on a phylogenetic analysis, catalases can be classified into clade 1, 2 and 3. Clade 1 contains small subunit catalases from plants and a subset of bacteria; clade 2 contains large subunit catalases from fungi and a second subset of bacteria; and clade 3 contains small subunit catalases from bacteria, fungi, protists, animals, and plants [, ]. This entry represent the core-forming domain of mono-functional, haem-containing catalases. It does not cover the region that carries an immune-responsive amphipathic octa-peptide that is found in the C-terminal of some catalases (IPR010582 from INTERPRO).; GO: 0004096 catalase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 7CAT_A 3NWL_D 4BLC_D 1TH3_D 1TH4_A 1TGU_B 1TH2_D 3RGS_D 3RE8_D 3RGP_C ....
Probab=99.85 E-value=7.9e-23 Score=157.15 Aligned_cols=60 Identities=62% Similarity=1.081 Sum_probs=50.6
Q ss_pred CCccCCCchHHHhhccCCCCCCCCCCCCCcccccccccCCcccccCCCCCCcccCCCCCCC
Q psy2585 1 MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGP 61 (80)
Q Consensus 1 LQgRlFsY~DtqryRlG~N~~qlPVN~P~~~~v~n~~rDG~m~~~~~~~~~nY~Pns~~~~ 61 (80)
||+|+|||+|+|++|+|+||+|||||+|+|+ |+|++|||+|+++|.++.|||+|||++++
T Consensus 324 l~aR~~aY~~s~~~R~~~n~~~lp~n~p~~~-~~~~~~dg~~~~~~~~~~~~~~~~~~~~~ 383 (384)
T PF00199_consen 324 LQARSFAYADSQRRRLGANYQQLPVNEPKCP-VHNNQRDGAMRFGNQGSAPNYFPSSFGGP 383 (384)
T ss_dssp HHHHHHHHHHHHHHHTSTTGGGSGGGS-SSS--BSST---TT-TTTTTTS-SSSSCSSTTS
T ss_pred hhcchhhhhhhhhccCCcccccCCCCCCCCC-cCCCCCCCCCccCCCCCCCCcCCCCCCCC
Confidence 6899999999999999999999999999997 99999999999999999999999999874
Done!