RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2585
(80 letters)
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 136 bits (345), Expect = 3e-40
Identities = 50/79 (63%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFN-NQGGAPNYFPNSFSGP 61
GRLF+YPDTHRHRLGPNYL +PVNCP+ +VANYQRDGPM NQGGAPNY+PNSF P
Sbjct: 349 GRLFAYPDTHRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFGAP 408
Query: 62 QESERGRLSTFAVSGDVAR 80
++ + SG+V R
Sbjct: 409 EQQPSALEHSIQYSGEVRR 427
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 133 bits (337), Expect = 3e-39
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQ 62
GR+FSY DT +RLG N L LPVN P V N +DG + + NY P+
Sbjct: 327 GRVFSYADTQMYRLGANGLSLPVNQPKV-AVNNGNQDGALNTGHTTSGVNYEPSRLEPRP 385
Query: 63 ESERGRLSTFAVSGDVAR 80
++ R S +SG +
Sbjct: 386 ADDKARYSELPLSGTTQQ 403
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 131 bits (333), Expect = 2e-38
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFN-NQGGAPNYFPNSFSGP 61
GRLF+Y D R+RLG N+ +PVN P V +Y RDG M + N G Y PN
Sbjct: 331 GRLFAYGDAQRYRLGVNHQHIPVNAPRC-PVHSYHRDGAMRVDGNFGSTLGYEPNDQGQW 389
Query: 62 QESERGRLSTFAVSGDVAR 80
E + G A
Sbjct: 390 AEQPDFSEPPLNLDGAAAH 408
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 131 bits (331), Expect = 3e-38
Identities = 39/79 (49%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFS-GP 61
GRLF+Y D HRHR+G N QLP+N A V NYQ+DG M FNN NY PNS++ P
Sbjct: 332 GRLFAYGDAHRHRVGANSHQLPINQAKA-PVNNYQKDGNMRFNNGNSEINYEPNSYTETP 390
Query: 62 QESERGRLSTFAVSGDVAR 80
+E ++S+F V G+V
Sbjct: 391 KEDPTAKISSFEVEGNVGN 409
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 130 bits (328), Expect = 1e-37
Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQ 62
GRLFSY DTHR+RLG NY Q+PVN P + RDG M G NY P+S G +
Sbjct: 334 GRLFSYGDTHRYRLGVNYPQIPVNKPRC-PFHSSSRDGYMQNGYYGSLQNYTPSSLPGYK 392
Query: 63 ESERGRLSTFAVSGDVAR 80
E + R F ++
Sbjct: 393 EDKSARDPKFNLAHIEKE 410
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 128 bits (324), Expect = 3e-37
Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG-P 61
GRLFSY DT RHR+GPNY QLP+NCPFA +V NYQRDG M F Q + NY PN + P
Sbjct: 334 GRLFSYSDTQRHRIGPNYQQLPINCPFA-QVNNYQRDGAMPFKQQTSSVNYEPNRYQDEP 392
Query: 62 QESERGRLSTFAVSGDVAR 80
+++ T + D+
Sbjct: 393 KQTPEYTEDTQPLHDDIHG 411
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 128 bits (323), Expect = 4e-37
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQ 62
GR F+Y D +R+G + QLPVN P V NY +G M +++ G Y PNS
Sbjct: 338 GRAFAYHDAQLYRVGAHVNQLPVNRPKN-AVHNYAFEGQMWYDHTGDRSTYVPNSNGDSW 396
Query: 63 ESERGRL-STFAVSGDVAR 80
E G + + G + R
Sbjct: 397 SDETGPVDDGWEADGTLTR 415
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 121 bits (307), Expect = 7e-35
Identities = 35/82 (42%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVNCPFATK-VANYQRDGPMAFN-NQGGAPNYFPNSFSG 60
RLFSY D HR+RLGPN+ Q+PVNCP+A+K RDGPM N N G P Y N S
Sbjct: 336 ARLFSYADAHRYRLGPNFHQIPVNCPYASKFFNPAIRDGPMNVNGNFGSEPTYLANDKSY 395
Query: 61 --PQESERGRLSTFAVSGDVAR 80
Q+ + +G
Sbjct: 396 TYIQQDRPIQQHQEVWNGPAIP 417
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 117 bits (294), Expect = 1e-32
Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG-- 60
GR FSY DT RLG N+ +LP+N P V N+ RDG M G NY+PN F
Sbjct: 353 GRNFSYFDTQISRLGVNFQELPINRPVC-PVMNFNRDGAMRHTISRGTVNYYPNRFDACP 411
Query: 61 PQESERGRLSTFA--VSGDVAR 80
P + G +A V+G AR
Sbjct: 412 PASLKEGGYLEYAQKVAGIKAR 433
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 116 bits (292), Expect = 1e-32
Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVNCPFATK-VANYQRDGPMAFN-NQGGAPNYFPNSFSG 60
RLFSYPDTHRHRLGPNY Q+PVNCP + RDGPM + N GG PNY N+++
Sbjct: 345 SRLFSYPDTHRHRLGPNYHQIPVNCPLKSGSFNPINRDGPMCVDGNLGGTPNY-ANAYNC 403
Query: 61 PQE-----SERGRLSTFAVSGDVAR 80
P + G +G+V
Sbjct: 404 PIQYAVSPKASGNKPDEKYTGEVVP 428
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 110 bits (277), Expect = 2e-30
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 3 GRLFSYPDTHRHRL-GPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG- 60
GRL+SY DT RL GPN+ ++P+N P N+QRDG NY PNS +
Sbjct: 410 GRLYSYTDTQISRLGGPNFHEIPINRPTC-PYHNFQRDGMHRMGIDTNPANYEPNSINDN 468
Query: 61 -----PQESERGRLSTFA--VSGDVAR 80
P +RG ++ V G+ R
Sbjct: 469 WPRETPPGPKRGGFESYQERVEGNKVR 495
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 108 bits (271), Expect = 2e-29
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 3 GRLFSYPDTHRHRL-GPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG- 60
GRL+SY DT +R GPN+ QLP+N P + V N RDG +Y P+ +
Sbjct: 353 GRLYSYLDTQLNRHRGPNFEQLPINRPVS-GVHNNHRDGQGQAWIHKNIHHYSPSYLNKG 411
Query: 61 -----PQESERGRLSTFA--VSGDVAR 80
Q RG +T SG + R
Sbjct: 412 YPAQANQTVGRGFFTTPGRTASGVLNR 438
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium
janthinellum} PDB: 2xf2_A*
Length = 688
Score = 89.6 bits (222), Expect = 5e-23
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 1 MKGRLFSYPDTHRHRL-GPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFS 59
++GRLFSY DT +R GPN+ QLP+N P A + N RDG Y PN+ +
Sbjct: 343 LQGRLFSYLDTQLNRHGGPNFEQLPINRPRA-PIHNNNRDGAGQMFIPLDPNAYSPNTEN 401
Query: 60 G------PQESERGRLSTFA--VSGDVAR 80
+ +G + SG + R
Sbjct: 402 KGSPKQANETVGKGFFTAPERTASGKLQR 430
>1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme,
eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura
homomalla} SCOP: e.5.1.2
Length = 374
Score = 56.7 bits (137), Expect = 2e-11
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 3 GRLFSYPDTHRHRLGPNYLQLPVN 26
R+ Y R +P
Sbjct: 348 LRVAVYTWVQHLRKLKIGSLVPAG 371
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase,
peroxidase, oxidoreductase; HET: HEM; 1.80A
{Mycobacterium avium subsp} PDB: 3e4y_A*
Length = 320
Score = 48.4 bits (116), Expect = 1e-08
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 3 GRLFSYPDTHRHRLGPNYL-QLP 24
R Y + + R G + Q P
Sbjct: 296 FRTLVYSASVKLRTGVDRGAQAP 318
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 25.7 bits (57), Expect = 1.7
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 5 LFSYPDTHRHRLGPNYLQLP 24
F P+ + + Q+P
Sbjct: 309 AFGTPNFDKMKGNRICKQIP 328
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 25.3 bits (56), Expect = 2.5
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 5 LFSYPDTHRHRLGPNYLQLP 24
+ P+ R +Q+P
Sbjct: 333 AAAEPNFDRMLGNVYCMQIP 352
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 3.5
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 23 LPVNCPF 29
LPV PF
Sbjct: 421 LPVASPF 427
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 24.5 bits (54), Expect = 4.3
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 5 LFSYPDTHRHRLGPNYLQLP 24
+ P+ R L +P
Sbjct: 321 SVNNPNYDRMEGNDICLSIP 340
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.429
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,202,849
Number of extensions: 54397
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 20
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)