RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2585
         (80 letters)



>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 497

 Score =  104 bits (260), Expect = 9e-29
 Identities = 50/81 (61%), Positives = 62/81 (76%), Gaps = 1/81 (1%)

Query: 1   MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAF-NNQGGAPNYFPNSFS 59
           ++GRLF+YPDTHRHRLGPNYL +PVNCP+  +VANYQRDGPM   +NQGGAPNY+PNSF 
Sbjct: 347 LQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFG 406

Query: 60  GPQESERGRLSTFAVSGDVAR 80
            P++       +   SG+V R
Sbjct: 407 APEQQPSALEHSIQYSGEVRR 427


>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
           1351]}
          Length = 474

 Score = 99.2 bits (247), Expect = 7e-27
 Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 1   MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFS- 59
           ++GRLF+Y D HRHR+G N  QLP+N   A  V NYQ+DG M FNN     NY PNS++ 
Sbjct: 327 LQGRLFAYGDAHRHRVGANSHQLPINQAKA-PVNNYQKDGNMRFNNGNSEINYEPNSYTE 385

Query: 60  GPQESERGRLSTFAVSGDVAR 80
            P+E    ++S+F V G+V  
Sbjct: 386 TPKEDPTAKISSFEVEGNVGN 406


>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
          Length = 484

 Score = 96.1 bits (239), Expect = 7e-26
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 1   MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG 60
           ++GR+FSY DT  +RLG N L LPVN P    V N  +DG +   +     NY P+    
Sbjct: 325 LQGRVFSYADTQMYRLGANGLSLPVNQPKV-AVNNGNQDGALNTGHTTSGVNYEPSRLEP 383

Query: 61  PQESERGRLSTFAVSGDVAR 80
               ++ R S   +SG   +
Sbjct: 384 RPADDKARYSELPLSGTTQQ 403


>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
          Length = 491

 Score = 94.6 bits (235), Expect = 3e-25
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 1   MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG 60
           ++GRLFSY DTHR+RLG NY Q+PVN P      +  RDG M     G   NY P+S  G
Sbjct: 332 LQGRLFSYGDTHRYRLGVNYPQIPVNKPRCP-FHSSSRDGYMQNGYYGSLQNYTPSSLPG 390

Query: 61  PQESERGRLSTFAVSGDVAR 80
            +E +  R   F ++     
Sbjct: 391 YKEDKSARDPKFNLAHIEKE 410


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 93.8 bits (233), Expect = 4e-25
 Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 1   MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFN-NQGGAPNYFPNSFS 59
           ++GRLFSY D HR+RLG N+ Q+PVN P      NY RDG M  + N G    Y PNS  
Sbjct: 327 LQGRLFSYGDAHRYRLGVNHHQIPVNAPKCP-FHNYHRDGAMRVDGNSGNGITYEPNSGG 385

Query: 60  GPQESERGRLSTFAVSGDVAR 80
             QE    +    ++ G    
Sbjct: 386 VFQEQPDFKEPPLSIEGAADH 406


>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
           1270]}
          Length = 498

 Score = 92.3 bits (229), Expect = 2e-24
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 1   MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG 60
           + GR F+Y D   +R+G +  QLPVN P    V NY  +G M +++ G    Y PNS   
Sbjct: 331 LLGRAFAYHDAQLYRVGAHVNQLPVNRPKNA-VHNYAFEGQMWYDHTGDRSTYVPNSNGD 389

Query: 61  PQESERGRL-STFAVSGDVAR 80
               E G +   +   G + R
Sbjct: 390 SWSDETGPVDDGWEADGTLTR 410


>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 488

 Score = 87.7 bits (217), Expect = 8e-23
 Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 1   MKGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVAN-YQRDGPMAFN-NQGGAPNYFPNSF 58
           ++ RLFSY D HR+RLGPN+ Q+PVNCP+A+K  N   RDGPM  N N G  P Y  N  
Sbjct: 334 LQARLFSYADAHRYRLGPNFHQIPVNCPYASKFFNPAIRDGPMNVNGNFGSEPTYLANDK 393

Query: 59  SG--PQESERGRLSTFAVSGDVAR 80
           S    Q+    +      +G    
Sbjct: 394 SYTYIQQDRPIQQHQEVWNGPAIP 417


>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
           [TaxId: 562]}
          Length = 571

 Score = 86.2 bits (213), Expect = 3e-22
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 1   MKGRLFSYPDTHRHRL-GPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFS 59
           ++GRLFSY DT   RL GPN+ ++P+N P      N+QRDG           NY PNS +
Sbjct: 382 LQGRLFSYTDTQISRLGGPNFHEIPINRPTCP-YHNFQRDGMHRMGIDTNPANYEPNSIN 440

Query: 60  GPQESE 65
                E
Sbjct: 441 DNWPRE 446


>d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein,
           N-terminal domain {Black sea rod (Plexaura homomalla)
           [TaxId: 47982]}
          Length = 366

 Score = 24.5 bits (53), Expect = 1.8
 Identities = 3/19 (15%), Positives = 5/19 (26%)

Query: 1   MKGRLFSYPDTHRHRLGPN 19
            + R+  Y      R    
Sbjct: 344 GELRVAVYTWVQHLRKLKI 362


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 288,592
Number of extensions: 10294
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 11
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)