RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2586
(125 letters)
>gnl|CDD|163712 cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 3 catalases are the most
abundant subfamily and are found in all three kingdoms
of life; they have a relatively small subunit size of 43
to 75 kDa, and bind a protoheme IX (heme b) group buried
deep inside the structure. Clade 3 catalases also bind
NADPH as a second redox-active cofactor. They form
tetramers, and in eukaryotic cells, catalases are
located in peroxisomes.
Length = 429
Score = 198 bits (506), Expect = 2e-63
Identities = 65/88 (73%), Positives = 73/88 (82%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWPH+++PLIEVG+L L++NP NYFAEVEQ AFSPS+LVPGI SPDKMLQGRLFSY D
Sbjct: 234 KVWPHKDYPLIEVGKLELNRNPENYFAEVEQAAFSPSNLVPGIGFSPDKMLQGRLFSYAD 293
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
HR+RLG NY QLPVN P V NYQR
Sbjct: 294 AHRYRLGVNYHQLPVNRPKC-PVNNYQR 320
>gnl|CDD|215003 smart01060, Catalase, Catalases are antioxidant enzymes that
catalyse the conversion of hydrogen peroxide to water
and molecular oxygen, serving to protect cells from its
toxic effects. Hydrogen peroxide is produced as a
consequence of oxidative cellular metabolism and can be
converted to the highly reactive hydroxyl radical via
transition metals, this radical being able to damage a
wide variety of molecules within a cell, leading to
oxidative stress and cell death. Catalases act to
neutralise hydrogen peroxide toxicity, and are produced
by all aerobic organisms ranging from bacteria to man.
Most catalases are mono-functional, haem-containing
enzymes, although there are also bifunctional
haem-containing peroxidase/catalases that are closely
related to plant peroxidases, and non-haem,
manganese-containing catalases that are found in
bacteria.
Length = 373
Score = 194 bits (496), Expect = 2e-62
Identities = 69/104 (66%), Positives = 82/104 (78%), Gaps = 6/104 (5%)
Query: 19 DTFGYNDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIE 78
+ F ++ P + KVWPH+++PLIEVG++ L++NP NYFAEVEQ AFSPS+LVPGIE
Sbjct: 260 EKFRFD----PFDL-TKVWPHKDYPLIEVGKMTLNRNPDNYFAEVEQAAFSPSNLVPGIE 314
Query: 79 PSPDKMLQGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQR 122
SPDKMLQGRLFSYPDT R+RLGPNY QLPVN P V NYQR
Sbjct: 315 FSPDKMLQGRLFSYPDTQRYRLGPNYHQLPVNRPRC-PVHNYQR 357
>gnl|CDD|215783 pfam00199, Catalase, Catalase.
Length = 383
Score = 169 bits (431), Expect = 1e-52
Identities = 59/87 (67%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWPH +PLIEVG L L++NP NYFAEVEQ AF PS+LVPGIEPS D MLQ RLF+Y D
Sbjct: 274 KVWPHDRYPLIEVGTLTLNRNPDNYFAEVEQAAFDPSNLVPGIEPSDDPMLQARLFAYAD 333
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQ 121
+ R RLGPNY QLPVN P V N +
Sbjct: 334 SQRRRLGPNYQQLPVNRPRCP-VHNQR 359
>gnl|CDD|163713 cd08157, catalase_fungal, Fungal catalases similar to yeast
catalases A and T. Catalase is a ubiquitous enzyme
found in both prokaryotes and eukaryotes, which is
involved in the protection of cells from the toxic
effects of peroxides. It catalyzes the conversion of
hydrogen peroxide to water and molecular oxygen.
Catalases also utilize hydrogen peroxide to oxidize
various substrates such as alcohol or phenols. This
family of fungal catalases has a relatively small
subunit size, and binds a protoheme IX (heme b) group
buried deep inside the structure. Fungal catalases also
bind NADPH as a second redox-active cofactor. They form
tetramers; in eukaryotic cells, catalases are typically
located in peroxisomes. Saccharomyces cerevisiae
catalase T is found in the cytoplasm, though.
Length = 451
Score = 170 bits (434), Expect = 1e-52
Identities = 64/89 (71%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWPH++FPL VG+L L++NP NYFAE+EQ AFSPSH+VPGIEPS D +LQ RLFSYPD
Sbjct: 250 KVWPHKDFPLRPVGKLTLNENPKNYFAEIEQAAFSPSHMVPGIEPSADPVLQARLFSYPD 309
Query: 95 THRHRLGPNYLQLPVNCPFATKVAN-YQR 122
HRHRLGPNY QLPVN P + V N YQR
Sbjct: 310 AHRHRLGPNYQQLPVNRPKTSPVYNPYQR 338
>gnl|CDD|223824 COG0753, KatE, Catalase [Inorganic ion transport and metabolism].
Length = 496
Score = 162 bits (412), Expect = 5e-49
Identities = 57/88 (64%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+WP ++PLIEVG +VL++NP N+FAEVEQ AF+P +LVPGI+ SPD +LQGRLFSY D
Sbjct: 290 KLWPEEDYPLIEVGTMVLNRNPDNFFAEVEQAAFAPGNLVPGIDFSPDPLLQGRLFSYGD 349
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
T R+RLGPNY Q+PVN P V N QR
Sbjct: 350 TQRYRLGPNYHQIPVNRPKC-PVHNNQR 376
>gnl|CDD|163710 cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 1 catalases are found in
bacteria, algae, and plants; they have a relatively
small subunit size of 55 to 69 kDa, and bind a protoheme
IX (heme b) group buried deep inside the structure. They
appear to form tetramers. In eukaryotic cells, catalases
are located in peroxisomes.
Length = 469
Score = 160 bits (406), Expect = 3e-48
Identities = 64/94 (68%), Positives = 75/94 (79%), Gaps = 2/94 (2%)
Query: 29 PLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGR 88
PL+ K+WP +FPL VG++ L+KNP N+FAEVEQ+AFSP +LVPGIEPS DKMLQGR
Sbjct: 271 PLDD-TKIWPEDQFPLKPVGKMTLNKNPDNFFAEVEQVAFSPGNLVPGIEPSDDKMLQGR 329
Query: 89 LFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQR 122
LFSY DT R+RLGPNYLQLP+N P A V N QR
Sbjct: 330 LFSYSDTQRYRLGPNYLQLPINAPKAA-VHNNQR 362
>gnl|CDD|163705 cd00328, catalase, Catalase heme-binding enzyme. Catalase is a
ubiquitous enzyme found in both prokaryotes and
eukaryotes, which is involved in the protection of cells
from the toxic effects of peroxides. It catalyzes the
conversion of hydrogen peroxide to water and molecular
oxygen. Catalases also utilize hydrogen peroxide to
oxidize various substrates such as alcohol or phenols.
Most catalases exist as tetramers of 65KD subunits
containing a protoheme IX group buried deep inside the
structure. In eukaryotic cells, catalases are located in
peroxisomes.
Length = 433
Score = 152 bits (386), Expect = 9e-46
Identities = 57/88 (64%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWP PLI VG+LVL++NP N+FAEVEQ AF P H+VPG+E S D +LQGRLFSY D
Sbjct: 234 KVWPEELVPLIVVGKLVLNRNPLNFFAEVEQAAFDPGHIVPGVEFSEDPLLQGRLFSYAD 293
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
T +RLGPN+ QLPVN P+A V N QR
Sbjct: 294 TQLYRLGPNFQQLPVNRPYA-PVHNNQR 320
>gnl|CDD|215328 PLN02609, PLN02609, catalase.
Length = 492
Score = 146 bits (371), Expect = 4e-43
Identities = 50/88 (56%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K WP PL VG+LVL++N N+FAE EQ+AF P+ +VPGI S DK+LQ R+F+Y D
Sbjct: 291 KTWPEDILPLQPVGRLVLNRNIDNFFAENEQLAFCPAIVVPGIYYSDDKLLQTRIFAYAD 350
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
T RHRLGPNYLQLPVN P N
Sbjct: 351 TQRHRLGPNYLQLPVNAPKC-AHHNNHH 377
>gnl|CDD|163711 cd08155, catalase_clade_2, Clade 2 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 2 catalases are mostly found
in bacteria and fungi; they have a large subunit size of
75 to 84 kDa, and bind a heme d group buried deep inside
the structure. They appear to form tetramers. In
eukaryotic cells, catalases are located in peroxisomes.
Length = 443
Score = 119 bits (300), Expect = 4e-33
Identities = 47/89 (52%), Positives = 63/89 (70%), Gaps = 2/89 (2%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+ P P+ VG++VL++NP N+FAE EQ+AF P+++VPGI+ S D +LQGRLFSY D
Sbjct: 241 KLIPEELVPVQRVGKMVLNRNPDNFFAETEQVAFCPANVVPGIDFSNDPLLQGRLFSYLD 300
Query: 95 THRHRLG-PNYLQLPVNCPFATKVANYQR 122
T RLG PN+ +LP+N P V N QR
Sbjct: 301 TQLSRLGGPNFHELPINRPVC-PVHNNQR 328
>gnl|CDD|236886 PRK11249, katE, hydroperoxidase II; Provisional.
Length = 752
Score = 109 bits (274), Expect = 6e-29
Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 8/92 (8%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+ P P+ VG++VL++NP N+FAE EQ+AF P H+VPGI+ + D +LQGRLFSY D
Sbjct: 355 KLIPEELVPVQRVGKMVLNRNPDNFFAETEQVAFHPGHIVPGIDFTNDPLLQGRLFSYTD 414
Query: 95 THRHRL-GPNYLQLPVN---CPFATKVANYQR 122
T RL GPN+ ++P+N CP+ N+QR
Sbjct: 415 TQISRLGGPNFHEIPINRPTCPY----HNFQR 442
>gnl|CDD|163709 cd08153, srpA_like, Catalase-like heme-binding proteins similar to
the uncharacterized srpA. Catalase is a ubiquitous
enzyme found in both prokaryotes and eukaryotes involved
in the protection of cells from the toxic effects of
peroxides. It catalyses the conversion of hydrogen
peroxide to water and molecular oxygen. Several other
related protein families share the catalase fold and
bind to heme, but do not necessarily have catalase
activity. This family contains uncharacterized proteins
similar to the Synechococcus elongatus PCC 7942
periplasmic protein srpA, of mostly bacterial origin.
The plasmid-encoded srpA is regulated by sulfate, but
does not seem to function in its uptake or metabolism.
Length = 295
Score = 48.0 bits (115), Expect = 2e-07
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 35 KVWP--HREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSY 92
K WP +E ++ G L + K + I F P L GIEPS D +L R +Y
Sbjct: 231 KPWPADRKE---VDAGTLTITKVAPDQGGACRDINFDPLVLPDGIEPSDDPLLAARSAAY 287
Query: 93 PDTHRHRL 100
+ R
Sbjct: 288 AVSFSRRQ 295
>gnl|CDD|163706 cd08150, catalase_like, Catalase-like heme-binding proteins and
protein domains. Catalase is a ubiquitous enzyme found
in both prokaryotes and eukaryotes involved in the
protection of cells from the toxic effects of peroxides.
It catalyses the conversion of hydrogen peroxide to
water and molecular oxygen. Several other related
protein families share the catalase fold and bind to
heme, but do not necessarily have catalase activity.
Length = 283
Score = 47.6 bits (113), Expect = 2e-07
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDK--MLQGRLFSY 92
+WP E P+ V ++ + A E AF+P G+ + D +L+ R Y
Sbjct: 219 ILWP-TEHPVEAVAKITIPPPTFT--AAQEAFAFNPFTPWHGLLETNDLGPILEVRRRVY 275
Query: 93 PDTHRHRL 100
+ R
Sbjct: 276 TSSQGLRH 283
>gnl|CDD|181572 PRK08871, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 626
Score = 31.0 bits (70), Expect = 0.13
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 73 LVPGIEPSPDKMLQGRLFSYPDTHRHRL 100
LV G E S KM+ G YPD H+ RL
Sbjct: 233 LVSGTEASQLKMIDG----YPDPHQRRL 256
>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase. This model describes LpxD, an
enzyme for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some
differences are found between lipid A of different
species. This protein represents the third step from
UDP-N-acetyl-D-glucosamine. The group added at this
step generally is 14:0(3-OH) (myristate) but may vary;
in Aquifex it appears to be 16:0(3-OH) (palmitate)
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 324
Score = 29.2 bits (66), Expect = 0.53
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 41 EFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSP 81
+ L ++ K+P FA+V ++ P GI P+
Sbjct: 58 DQGLPAKCAALVVKDPYLAFAKVAELFDPPPKREAGIHPTA 98
>gnl|CDD|163708 cd08152, y4iL_like, Catalase-like heme-binding proteins similar to
the uncharacterized y4iL. Catalase is a ubiquitous
enzyme found in both prokaryotes and eukaryotes involved
in the protection of cells from the toxic effects of
peroxides. It catalyses the conversion of hydrogen
peroxide to water and molecular oxygen. Several other
related protein families share the catalase fold and
bind to heme, but do not necessarily have catalase
activity. This family contains uncharacterized proteins
similar to Rhizobium sp. NGR234 y4iL, of mostly
bacterial origin.
Length = 305
Score = 28.4 bits (64), Expect = 0.96
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPS------NYFAEVEQIAFSPSH 72
+ + +P+E + WP P + V + + F + ++F+P H
Sbjct: 225 DLEKMPIEDASVEWPEALSPFVPVATITIPPQDFDSPARQRAFDDN--LSFNPWH 277
>gnl|CDD|163707 cd08151, AOS, Allene oxide synthase. Allene oxide synthase
converts a fatty acid hydroperoxide to an allene oxide,
which is an unstable epoxide. In corals, the enzyme is
part of a eiconaosid synthesis pathway that is initiated
by a lipoxygenase, which generates the fatty acid
hydroperoxides in the first step. The structure of
allene oxide synthase closely resembles that of
catalase, but allene oxide synthase does not have
catalase activity.
Length = 328
Score = 27.8 bits (62), Expect = 1.4
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 34 NKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSH 72
+ W E P +++ + L N E+E++AF+P +
Sbjct: 257 CRPWDEDEHPWLDLAVVRLGAPLPN--DELEKLAFNPGN 293
>gnl|CDD|224614 COG1700, COG1700, Uncharacterized conserved protein [Function
unknown].
Length = 503
Score = 27.2 bits (60), Expect = 2.6
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 40 REFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDTHRHR 99
RE +++ G NP+ P+ + G SP +LQ L DT +R
Sbjct: 174 REVQVVDAGL-ASVVNPNGLLGVTSD----PASMDAGGNISPTNVLQLNLRESFDTPENR 228
Query: 100 LGPNYLQ 106
+L+
Sbjct: 229 FYKYFLE 235
>gnl|CDD|185202 PRK15302, PRK15302, hypothetical protein; Provisional.
Length = 229
Score = 27.0 bits (59), Expect = 2.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 88 RLFSYPDTHRHRLGPNYLQLPVNCPFATKVA 118
RL + T ++LG + L ++CP ATK A
Sbjct: 54 RLATLSATDVNQLGTKDVSLSISCPSATKAA 84
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 26.8 bits (60), Expect = 3.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 86 QGRLFSYPDTHRHRLGP 102
QGRL ++P+T +HR+ P
Sbjct: 435 QGRLLAFPNTLQHRVEP 451
>gnl|CDD|225705 COG3164, COG3164, Predicted membrane protein [Function unknown].
Length = 1271
Score = 27.0 bits (60), Expect = 3.7
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 59 YFAEVEQIAFSPSHLVPGIE 78
+ A +E + + L+PG+E
Sbjct: 393 FQASLEDVGWKQWKLLPGVE 412
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 26.2 bits (58), Expect = 4.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 102 PNYLQLPVNCPF 113
PN L+LP CPF
Sbjct: 283 PNLLRLPKGCPF 294
>gnl|CDD|119400 cd06661, GGCT_like, GGCT-like domains, also called AIG2-like
family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes
the formation of pyroglutamic acid (5-oxoproline) from
dipeptides containing gamma-glutamyl, and is a dimeric
protein. In Homo sapiens, the protein is encoded by the
gene C7orf24, and the enzyme participates in the
gamma-glutamyl cycle. Hereditary defects in the
gamma-glutamyl cycle have been described for some of the
genes involved, but not for C7orf24. The synthesis and
metabolism of glutathione
(L-gamma-glutamyl-L-cysteinylglycine) ties the
gamma-glutamyl cycle to numerous cellular processes;
glutathione acts as a ubiquitous reducing agent in
reductive mechanisms involved in protein and DNA
synthesis, transport processes, enzyme activity, and
metabolism. AIG2 (avrRpt2-induced gene) is an
Arabidopsis protein that exhibits RPS2- and
avrRpt2-dependent induction early after infection with
Pseudomonas syringae pv maculicola strain ES4326
carrying avrRpt2. avrRpt2 is an avirulence gene that can
convert virulent strains of P. syringae to avirulence on
Arabidopsis thaliana, soybean, and bean. The family also
includes bacterial tellurite-resistance proteins (trgB);
tellurium (Te) compounds are used in industrial
processes and had been used as antimicrobial agents in
the past. Some members have been described proteins
involved in cation transport (chaC).
Length = 99
Score = 25.0 bits (55), Expect = 8.5
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 65 QIAFSPSHLVPGIEPSPDKMLQGRLFSYPDTHRHRL 100
++ F PG+ P P + G L+ RL
Sbjct: 32 RLVFGGGSGYPGLVPGPGARVWGELYEVDPEDLARL 67
>gnl|CDD|111641 pfam02768, DNA_pol3_beta_3, DNA polymerase III beta subunit,
C-terminal domain. A dimer of the beta subunit of DNA
polymerase beta forms a ring which encircles duplex
DNA. Each monomer contains three domains of identical
topology and DNA clamp fold.
Length = 121
Score = 24.9 bits (55), Expect = 8.6
Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 46 EVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIE 78
E+G+ + + +Y E +IAF+ S+L+ ++
Sbjct: 54 EIGRAEEEVDV-DYIGEPLEIAFNVSYLLDALK 85
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.425
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,350,668
Number of extensions: 546482
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 25
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)