RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2586
(125 letters)
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 205 bits (523), Expect = 2e-65
Identities = 68/88 (77%), Positives = 80/88 (90%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWPH+++PLI VG+LVL++NP NYFAEVEQIAF PS++ PGIE SPDKMLQGRLF+YPD
Sbjct: 297 KVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPD 356
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
THRHRLGPNYL +PVNCP+ +VANYQR
Sbjct: 357 THRHRLGPNYLHIPVNCPYRARVANYQR 384
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 200 bits (512), Expect = 4e-64
Identities = 54/88 (61%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWPH+++PLIEVG+ L++NP NYFAEVEQ AF+P+++VPGI SPDKMLQGRLF+Y D
Sbjct: 279 KVWPHKDYPLIEVGEFELNRNPQNYFAEVEQAAFNPANVVPGISFSPDKMLQGRLFAYGD 338
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
R+RLG N+ +PVN P V +Y R
Sbjct: 339 AQRYRLGVNHQHIPVNAPRC-PVHSYHR 365
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 199 bits (509), Expect = 2e-63
Identities = 52/89 (58%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWP +FPL VG++VL++NP N+FA+VEQ AF+PS VP E S D +LQ RLFSY D
Sbjct: 284 KVWPQGQFPLRRVGKIVLNENPLNFFAQVEQAAFAPSTTVPYQEASADPVLQARLFSYAD 343
Query: 95 THRHRLGPNYLQLPVNCPFATK-VANYQR 122
HR+RLGPN+ Q+PVNCP+A+K R
Sbjct: 344 AHRYRLGPNFHQIPVNCPYASKFFNPAIR 372
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 198 bits (507), Expect = 3e-63
Identities = 54/88 (61%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K +E+PLIEVG + L++NP NYFAEVEQ+ FSP + VPGIE SPDK+LQGRLF+Y D
Sbjct: 280 KTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGD 339
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
HRHR+G N QLP+N A V NYQ+
Sbjct: 340 AHRHRVGANSHQLPINQAKA-PVNNYQK 366
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 199 bits (508), Expect = 3e-63
Identities = 58/89 (65%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWPH++FPL G+ L++NP NY+AE EQIAFSPSH VPG+EPS D +LQ RLFSYPD
Sbjct: 293 KVWPHKDFPLRHFGRFTLNENPKNYYAETEQIAFSPSHTVPGMEPSNDPVLQSRLFSYPD 352
Query: 95 THRHRLGPNYLQLPVNCPFATK-VANYQR 122
THRHRLGPNY Q+PVNCP + R
Sbjct: 353 THRHRLGPNYHQIPVNCPLKSGSFNPINR 381
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 198 bits (505), Expect = 8e-63
Identities = 53/88 (60%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+W +++PL+EVG + L+KNP NYFAEVEQ AF+P+++VPGI SPD+MLQGRLFSY D
Sbjct: 282 KIWYTQDYPLMEVGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGD 341
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
THR+RLG NY Q+PVN P + R
Sbjct: 342 THRYRLGVNYPQIPVNKPRC-PFHSSSR 368
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 197 bits (504), Expect = 8e-63
Identities = 54/88 (61%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K W P VG + L+KN NYFAE E + F+P LVPG+ PS DK+LQGRLFSY D
Sbjct: 282 KDWFEDVIPFQHVGTMTLNKNVDNYFAETESVGFNPGVLVPGMLPSEDKLLQGRLFSYSD 341
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
T RHR+GPNY QLP+NCPFA +V NYQR
Sbjct: 342 TQRHRIGPNYQQLPINCPFA-QVNNYQR 368
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 197 bits (504), Expect = 1e-62
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K +++P I+VG L L++NP N+FA++E AFSPS+ VPGI SPD+ML GR F+Y D
Sbjct: 286 KTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHD 345
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
+R+G + QLPVN P V NY
Sbjct: 346 AQLYRVGAHVNQLPVNRPKN-AVHNYAF 372
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 190 bits (484), Expect = 7e-60
Identities = 47/88 (53%), Positives = 63/88 (71%), Gaps = 3/88 (3%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+WP + P ++GQ+VL+KN N+F E EQ+A +P++LVPGIEPS D++LQGR+FSY D
Sbjct: 277 KIWP--DVPEKKIGQMVLNKNVDNFFQETEQVAMAPANLVPGIEPSEDRLLQGRVFSYAD 334
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
T +RLG N L LPVN P V N +
Sbjct: 335 TQMYRLGANGLSLPVNQPKV-AVNNGNQ 361
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 188 bits (478), Expect = 2e-57
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+WP P+ +G++ L++NP +F + EQIAF SH+V GI S D +LQGR FSY D
Sbjct: 301 KIWPEDLVPVRYIGEMELNRNPDEFFPQTEQIAFCTSHVVNGIGFSDDPLLQGRNFSYFD 360
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
T RLG N+ +LP+N P V N+ R
Sbjct: 361 TQISRLGVNFQELPINRPVC-PVMNFNR 387
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 182 bits (464), Expect = 3e-55
Identities = 43/89 (48%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+ P P+ VG++VL++NP N+FAE EQ AF P H+VPG++ + D +LQGRL+SY D
Sbjct: 358 KLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLYSYTD 417
Query: 95 THRHRL-GPNYLQLPVNCPFATKVANYQR 122
T RL GPN+ ++P+N P N+QR
Sbjct: 418 TQISRLGGPNFHEIPINRPTC-PYHNFQR 445
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 181 bits (461), Expect = 4e-55
Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K P PL +G++ L++NP NYFAE EQI+F P H+V G++ + D +LQGRL+SY D
Sbjct: 301 KFLPEEFAPLQVLGEMTLNRNPMNYFAETEQISFQPGHIVRGVDFTEDPLLQGRLYSYLD 360
Query: 95 THRHRL-GPNYLQLPVNCPFATKVANYQR 122
T +R GPN+ QLP+N P + V N R
Sbjct: 361 TQLNRHRGPNFEQLPINRPVS-GVHNNHR 388
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase,
peroxidase, oxidoreductase; HET: HEM; 1.80A
{Mycobacterium avium subsp} PDB: 3e4y_A*
Length = 320
Score = 155 bits (394), Expect = 5e-48
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
W ++ VG + + + + + F P + GIEPS D +L+ R Y
Sbjct: 246 SAWQS--TQIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSA 303
Query: 95 THRHRLGPNYL-QLP 108
+ + R G + Q P
Sbjct: 304 SVKLRTGVDRGAQAP 318
>1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme,
eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura
homomalla} SCOP: e.5.1.2
Length = 374
Score = 148 bits (374), Expect = 1e-44
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDK-------MLQG 87
+W P ++ ++ + S +E+ AF+ ++ + K + +
Sbjct: 291 ILWDKETHPWFDLAKVSIKTPLSP--DVLEKTAFNIANQPASLGLLEAKSPEDYNSIGEL 348
Query: 88 RLFSYPDTHRHRLGPNYLQLPVN 110
R+ Y R +P
Sbjct: 349 RVAVYTWVQHLRKLKIGSLVPAG 371
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium
janthinellum} PDB: 2xf2_A*
Length = 688
Score = 131 bits (332), Expect = 4e-37
Identities = 42/89 (47%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+ P P+ +G++ L++NP NYFAE EQ+ F P H+V G++ + D +LQGRLFSY D
Sbjct: 293 KIVPEELVPVTILGKMQLNRNPXNYFAETEQVMFQPGHIVRGVDFTEDPLLQGRLFSYLD 352
Query: 95 THRHRL-GPNYLQLPVNCPFATKVANYQR 122
T +R GPN+ QLP+N P A + N R
Sbjct: 353 TQLNRHGGPNFEQLPINRPRA-PIHNNNR 380
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein,
BI-functional enzyme, dioxygenase, fatty ACI
biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura
homomalla}
Length = 1066
Score = 68.0 bits (165), Expect = 1e-14
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDK-------MLQG 87
+W P ++ ++ + S +E+ AF+ ++ + K + +
Sbjct: 291 ILWDKETHPWFDLAKVSIKTPLS--PDVLEKTAFNIANQPASLGLLEAKSPEDYNSIGEL 348
Query: 88 RLFSYPDTHRHRLGPNYLQLPVNCPFATKV 117
R+ Y R +P V
Sbjct: 349 RVAVYTWVQHLRKLKIGSLVPAGQNAIYNV 378
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.003
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 25/98 (25%)
Query: 48 GQLVLDKNPSNYFAEVEQI-AFSPSHLVPGIEPSPDKMLQGRLFSYPDTHRH-------- 98
GQ N +YF E+ + + I+ S + L + + D +
Sbjct: 162 GQ----GNTDDYFEELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLDAEKVFTQGLNIL 216
Query: 99 --------RLGPNYL-QLPVNCP--FATKVANYQRVKK 125
+YL +P++CP ++A+Y K
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Score = 31.9 bits (72), Expect = 0.039
Identities = 23/140 (16%), Positives = 33/140 (23%), Gaps = 72/140 (51%)
Query: 42 FPLIEVGQL--------VLDKNPSNYFAEVE----------------------------- 64
PLI V QL +L P + ++
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 65 -------------QIAFSPSHLVPGI----------EPSPDKML------QGRLFSYPDT 95
A+ + L P I PSP ML Q ++ Y +
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP--MLSISNLTQEQVQDYVNK 355
Query: 96 HRHRLGPN---YLQLPVNCP 112
L + L VN
Sbjct: 356 TNSHLPAGKQVEISL-VNGA 374
Score = 30.8 bits (69), Expect = 0.12
Identities = 27/132 (20%), Positives = 43/132 (32%), Gaps = 44/132 (33%)
Query: 13 RKQQGTDTFGYNDKALP-------LETGNKVWPH-----REFPLIEVGQLVLDKNPSNYF 60
R + Y + +LP LE V P +V V N ++
Sbjct: 309 RCYEA-----YPNTSLPPSILEDSLENNEGV-PSPMLSISNLTQEQVQDYVNKTN--SHL 360
Query: 61 AEVEQIAFS----PSHLV----P----GIEPS------PDKMLQGRLFSYPDTHRH-RLG 101
+Q+ S +LV P G+ + P + Q R+ P + R +
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI---PFSERKLKFS 417
Query: 102 PNYLQLPVNCPF 113
+L PV PF
Sbjct: 418 NRFL--PVASPF 427
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.17
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 12/34 (35%)
Query: 83 KMLQGRLFSY-PDTHRHRLGPNYLQLPVNCPFAT 115
K LQ L Y D+ P L + AT
Sbjct: 23 KKLQASLKLYADDS-----AP---ALAIK---AT 45
>3ozq_A Serpin48; SPE, hydrolase I; 1.90A {Tenebrio molitor}
Length = 376
Score = 28.7 bits (65), Expect = 0.47
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 23 YNDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
++ L T NK++ F + E Y A+ E + FS
Sbjct: 84 LTNEEYTLHTANKIYVKTNFSVREE---FQKIAVEVYGAQSENVDFS 127
>3kcg_I Antithrombin-III, ATIII; michaelis complex, blood coagulation,
calcium, disulfide bond, EGF-like domain, glycoprotein,
hemophilia, hydrolase; HET: NAG FUC MAN NTP; 1.70A {Homo
sapiens} PDB: 1e04_I* 1ath_A 1ant_L* 1br8_L 1azx_I*
1dzh_L* 1e03_L* 1dzg_L* 1e05_L* 1jvq_L* 1lk6_L* 1nq9_I*
1oyh_L* 1r1l_L* 1sr5_A* 2ant_L* 2beh_L* 2hij_L* 2znh_A*
3evj_I* ...
Length = 432
Score = 28.0 bits (63), Expect = 0.80
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+KA L + N+++ + E D + Y A+++ + F
Sbjct: 134 ANKASKLVSANRLFGDKSLTFNET---YQDISELVYGAKLQPLDFK 176
>2ceo_A Thyroxine-binding globulin; transport, serpin, hormone trans
thyroxine, disease mutation, glycoprotein; HET: T44;
2.80A {Homo sapiens}
Length = 379
Score = 28.0 bits (63), Expect = 0.91
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
K L L+ GN ++ + + L+ + Y EV FS
Sbjct: 86 PKKELELQIGNALFIGKHLKPLAK---FLNDVKTLYETEVFSTDFS 128
>1hle_A Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine
proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Length = 345
Score = 27.6 bits (62), Expect = 1.0
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
L+ N+++ + + + L Y AE+ + F
Sbjct: 82 GAPYILKLANRLYGEKTYNFLAD---FLASTQKMYGAELASVDFQ 123
>3f1s_A Protein Z-dependent protease inhibitor; PZ, ZPI, complex, serpin,
protease inhibitor, protease, GLYC secreted, serine
protease inhibitor, blood coagulation; HET: FLC NAG;
2.30A {Homo sapiens} PDB: 3h5c_A*
Length = 385
Score = 27.6 bits (62), Expect = 1.1
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ L L G+ + H++F + E + + + E + F
Sbjct: 95 RNLELGLTQGSFAFIHKDFDVKET---FFNLSKRYFDTECVPMNFR 137
>2xn6_A Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y
T44; 1.29A {Homo sapiens} PDB: 2xn7_A* 2xn5_A* 2riv_A
2xn3_A* 2riw_A*
Length = 350
Score = 27.6 bits (62), Expect = 1.1
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
K L L+ GN ++ + + L+ + Y EV FS
Sbjct: 92 KKELELQIGNALFIGKHLKPLAK---FLNDVKTLYETEVFSTDFS 133
>2r9y_A Alpha-2-antiplasmin; inhibitory serpin, plasmin inhibitor, AC
phase, glycoprotein, protease inhibitor, secreted,
serine P inhibitor, sulfation; 2.65A {Mus musculus}
Length = 430
Score = 27.6 bits (62), Expect = 1.1
Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 11 NSRKQQGTDTFGYNDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSP 70
S F N + +++ + FP+ + L+++ + A+ ++
Sbjct: 80 GSCLPHLLSHFYQNLGPGTIRLAARIYLQKGFPIKDDF---LEQSERLFGAKPVKLTGKQ 136
Query: 71 S 71
Sbjct: 137 E 137
>1as4_A Antichymotrypsin, ACT; serpin, serine protease inhibitor; 2.10A
{Homo sapiens} SCOP: e.1.1.1 PDB: 2ach_A* 4caa_A 3caa_A
Length = 341
Score = 27.6 bits (62), Expect = 1.2
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
L L GN ++ + L++ + Y +E F
Sbjct: 88 SDELQLSMGNAMFVKEQLSLLDR---FTEDAKRLYGSEAFATDFQ 129
>3nda_A Serpin-2; vaccination target, TICK, hydrolase inhibitor; HET: 1PE;
1.80A {Ixodes ricinus}
Length = 377
Score = 27.2 bits (61), Expect = 1.4
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
L+ N R L+ S++ AE+ ++ F+
Sbjct: 87 PSNSTLDVANAAAIQRTLALLNS---YESALQSSFGAELHKVDFA 128
>1wz9_A Maspin precursor; serpin, tumor suppressor, serpinb5, signaling
protein; HET: CME; 2.10A {Homo sapiens} PDB: 1xu8_A
1xqg_A 1xqj_A
Length = 375
Score = 27.2 bits (61), Expect = 1.4
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
L+ +++ + L + Y E+E + F
Sbjct: 81 SSFYSLKLIKRLYVDKSLNLSTEF---ISSTKRPYAKELETVDFK 122
>2arr_A Plasminogen activator inhibitor-2; serpin, peptide binding,
hydrolase inhibitor-PEPT complex; 1.55A {Homo sapiens}
PDB: 2arq_A 1jrr_A 1by7_A
Length = 382
Score = 27.2 bits (61), Expect = 1.5
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
LE+ NK++ + E + Y +E + + F
Sbjct: 85 TGNYLLESVNKLFGEKSASFREE---YIRLCQKYYSSEPQAVDFL 126
>1lj5_A Plasminogen activator inhibitor-1; beta-barrell, blood clotting;
1.80A {Homo sapiens} SCOP: e.1.1.1 PDB: 1dvn_A 1c5g_A
1a7c_A* 3q02_A 3q03_A 3r4l_A* 1oc0_A 1b3k_A 3pb1_I
1dvm_A 3eox_A 3cvm_A 1db2_A 9pai_A 3lw2_A 9pai_B
Length = 379
Score = 27.2 bits (61), Expect = 1.7
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ T + ++ R+ L++ + + + V+Q+ FS
Sbjct: 85 PWNKDEISTTDAIFVQRDLKLVQG---FMPHFFRLFRSTVKQVDFS 127
>2vdx_A Corticosteroid-binding globulin; transport protein, cortisol
binding globulin, glycoprotein, lipid-binding, disease
mutation, CBG, SERP cleaved; 1.84A {Homo sapiens} PDB:
2vdy_A*
Length = 373
Score = 27.2 bits (61), Expect = 1.8
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
D +L + GN ++ L+E Y +EV + F
Sbjct: 88 DTSLEMTMGNALFLDGSLELLES---FSADIKHYYESEVLAMNFQ 129
>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin,
protease, inhibition, inhibitor, blood CLO; HET: TYS NDG
NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A*
Length = 480
Score = 26.9 bits (60), Expect = 1.9
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ L + N ++ ++FP++ K YFAE + FS
Sbjct: 194 NFGYTLRSVNDLYIQKQFPILLD---FKTKVREYYFAEAQIADFS 235
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 26.8 bits (60), Expect = 1.9
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 54 KNPSNYFAEVEQIAFSPSHLVPGIEPS 80
KNP +A + QI + I PS
Sbjct: 77 KNPYLTYARMAQILDTTPQPAQNIAPS 103
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood
coagulation, cleavage of basic residues, disease
mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens}
PDB: 2ol2_A*
Length = 395
Score = 26.8 bits (60), Expect = 1.9
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
L GN ++ L + + + Y A+ F
Sbjct: 111 RDGFQLSLGNALFTDLVVDLQDT---FVSAMKTLYLADTFPTNFR 152
>2v95_A Corticosteroid-binding globulin; transport protein, CBG, RCL,
serpin, secreted, transport, glycoprotein,
lipid-binding, glucocorticoids; HET: HCY; 1.93A {Rattus
norvegicus}
Length = 371
Score = 26.8 bits (60), Expect = 2.0
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
D L + GN ++ ++ L + L Y +E I F
Sbjct: 87 DTGLEMNMGNAMFLLQKLKLKDS---FLADVKQYYESEALAIDFE 128
>2h4p_A MENT, heterochromatin-associated protein MENT; serine protease
inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus
gallus} PDB: 2h4q_A
Length = 394
Score = 26.9 bits (60), Expect = 2.0
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
L + N+++ + + L+ L + Y AE +++ F
Sbjct: 134 RNNYSLRSANRIYVEKTYALLPT---YLQLSKKYYKAEPQKVNFK 175
>1imv_A PEDF, pigment epithelium-derived factor; serpin, angiogenesis,
signaling protein; HET: NAG; 2.85A {Homo sapiens} SCOP:
e.1.1.1
Length = 398
Score = 26.8 bits (60), Expect = 2.0
Identities = 3/48 (6%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPS 71
L++ +++ ++ + + +Y + +P
Sbjct: 110 TAPQKNLKSASRIVFEKKLRIKSS---FVAPLEKSYGTRPRVLTGNPR 154
>4au2_A HSP47, serpin peptidase inhibitor, clade H (heat shock P 47),
member 1, (collagen binding...; chaperone-peptide
complex; 2.30A {Canis lupus familiaris} PDB: 4au3_A
4au4_A 4awr_A 4au3_B
Length = 392
Score = 26.8 bits (60), Expect = 2.0
Identities = 6/46 (13%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ + + G++++ E + + +Y E +I F
Sbjct: 88 TARNVTWKLGSRLYGPSSVSFAED---FVRSSKQHYNCEHSKINFR 130
>1qmn_A AACT, alpha-1-antichymotrypsin; serpin, serine proteinase
inhibitor, partial loop insertion, loop-sheet
polymerization, emphysema, disease mutation; 2.27A {Homo
sapiens} SCOP: e.1.1.1 PDB: 3dlw_A
Length = 401
Score = 26.9 bits (60), Expect = 2.2
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ L L GN ++ + L++ + Y +E F
Sbjct: 107 SSDELQLSMGNAMFVKEQLSLLDR---FTEDAKRLYGSEAFATDFQ 149
>1uhg_A Ovalbumin, S-ovalbumin; allergen, egg white protein, serpin; HET:
SEP NAG; 1.90A {Gallus gallus} SCOP: e.1.1.1 PDB:
1ova_A* 1jti_A
Length = 385
Score = 26.9 bits (60), Expect = 2.2
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ ++++ +P++ L Y +E I F
Sbjct: 94 NDVYSFSLASRLYAEERYPILPE---YLQCVKELYRGGLEPINFQ 135
>2h4r_A MENT, heterochromatin-associated protein MENT; serine protease
inhibitor, serpin, hydrolase inhibitor; 2.70A {Gallus
gallus} PDB: 2dut_A
Length = 415
Score = 26.5 bits (59), Expect = 2.4
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
L + N+++ + + L+ L + Y AE +++ F
Sbjct: 114 RNNYSLRSANRIYVEKTYALLPT---YLQLSKKYYKAEPQKVNFK 155
>3f5n_A Neuroserpin; cleaved form, fenib, human, tissue PLAS activator,
hydrolase inhibitor; 3.15A {Homo sapiens}
Length = 407
Score = 26.5 bits (59), Expect = 2.4
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ ++ N ++ F + E L + A V + FS
Sbjct: 98 ESQYVMKIANSLFVQNGFHVNEE---FLQMMKKYFNAAVNHVDFS 139
>3f02_A Neuroserpin; cleaved form, fenib, human, disease MUT glycoprotein,
protease inhibitor, secreted, serine protease inhibitor,
hydrolase inhibitor; 1.80A {Homo sapiens} PDB: 3fgq_A
1jjo_C 1jjo_A
Length = 359
Score = 26.4 bits (59), Expect = 2.4
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ ++ N ++ F + E L + A V + FS
Sbjct: 98 ESQYVMKIANSLFVQNGFHVNEE---FLQMMKKYFNAAVNHVDFS 139
>1yxa_A Serine (OR cysteine) proteinase inhibitor, clade 3N; serpin,
antichymotrypsin, protease inhibitor, reactive centr
plasma, hydrolase inhibitor; 2.10A {Mus musculus}
Length = 398
Score = 26.4 bits (59), Expect = 2.5
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ + TG+ ++ + ++ +K + Y AE F
Sbjct: 108 KDQVQISTGSALFIEKRQQILTEF---QEKAKTLYQAEAFTADFQ 149
>3pzf_A Serpin 2; protease inhibitor, melanization, hydrolase inhibito;
1.75A {Anopheles gambiae}
Length = 397
Score = 26.5 bits (59), Expect = 2.5
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
++K L + +I ++Y A +E++++S
Sbjct: 100 DNKDYDLNIATNFFVDDFIEVINK---YQQIANTHYHAMLEKVSYS 142
>1sek_A Serpin K; serine protease inhibitor, protease; 2.10A {Manduca
sexta} SCOP: e.1.1.1 PDB: 1k9o_I
Length = 378
Score = 26.4 bits (59), Expect = 2.7
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
K + L+ +K++ + L + + + +EV+ + F
Sbjct: 86 AVKGVDLKMASKIYVAKGLELNDD---FAAVSRDVFGSEVQNVDFV 128
>2oay_A C1-inhibitor, plasma protease C1 inhibitor, C1 INH, C1INH; latent
serpin, RCL insertion, immune system,hydrolase inhibi;
HET: NAG; 2.35A {Homo sapiens}
Length = 390
Score = 26.4 bits (59), Expect = 2.8
Identities = 1/41 (2%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 30 LETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSP 70
+ + ++++ + + + ++ + + Y + ++ +
Sbjct: 108 VTSVSQIFHSPDLAIRDT---FVNASRTLYSSSPRVLSNNS 145
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A
biosynthesis pathway, transferase; 1.30A {Pseudomonas
aeruginosa}
Length = 372
Score = 26.5 bits (59), Expect = 2.8
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 54 KNPSNYFAEVEQIAFSPSHLVPGIEPS 80
NP +A + + GI P+
Sbjct: 99 ANPYLAYASLSHLFDRKPKAAAGIHPT 125
>2zv6_A Serpin B3; serine proteinase inhibitor, reactive site loop,
acetylation, alternative splicing, cytoplasm,
polymorphism, protease inhibitor; 2.70A {Homo sapiens}
Length = 401
Score = 26.1 bits (58), Expect = 3.1
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
A L+ NK++ + + ++ LD Y VE + F+
Sbjct: 107 TDAYELKIANKLFGEKTYLFLQE---YLDAIKKFYQTSVESVDFA 148
>1sng_A COG4826: serine protease inhibitor; serine protease inhibitor
(serpin), native state., hydrolase inhibitor; 1.76A
{Thermobifida fusca} SCOP: e.1.1.1
Length = 370
Score = 26.1 bits (58), Expect = 3.8
Identities = 5/45 (11%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ L + +W + P+ ++V F
Sbjct: 80 TDSPDLASRTVLWVSADVPVRSS---FRATMHDRPDSDVRTADFR 121
>3le2_A Serpin-ZX; apoplast, glycoprotein, protease inhibitor, secreted,
serine protease inhibitor, hydrolase; 2.20A {Arabidopsis
thaliana}
Length = 393
Score = 25.8 bits (57), Expect = 4.4
Identities = 7/46 (15%), Positives = 10/46 (21%), Gaps = 3/46 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ L N W + +Y A Q F
Sbjct: 88 ANGGPKLSVANGAWIDKSLSFKPS---FKQLLEDSYKAASNQADFQ 130
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 26.1 bits (58), Expect = 4.4
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 89 LFSYPDTHRHRLGPNYLQLP 108
F P+ + + Q+P
Sbjct: 309 AFGTPNFDKMKGNRICKQIP 328
>3sto_A Serine protease inhibitor; serpin fold, hydrolase inhibitor; 2.41A
{Schistosoma haematobium}
Length = 406
Score = 25.7 bits (57), Expect = 4.7
Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 16 QGTDTFGYNDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
TF + + ++ + + + + ++ E++Q+ FS
Sbjct: 101 TSEKTFLNEKEENVVRISTGIFVEKTYEVERRF---NESIANDSEGELKQVDFS 151
>1mtp_A Serine proteinase inhibitor (serpin), chain A; structural genomics,
protease inhibitor; 1.50A {Thermobifida fusca} SCOP:
e.1.1.1
Length = 323
Score = 25.6 bits (57), Expect = 4.8
Identities = 5/45 (11%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 25 DKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ L + +W + P+ ++V F
Sbjct: 76 TDSPDLASRTVLWVSADVPVRSS---FRATMHDRPDSDVRTADFR 117
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 25.3 bits (56), Expect = 6.0
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 89 LFSYPDTHRHRLGPNYLQLP 108
+ P+ R +Q+P
Sbjct: 333 AAAEPNFDRMLGNVYCMQIP 352
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 24.3 bits (53), Expect = 7.3
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 56 PSNYFAEVEQIAFSPSHLVPGIEPSP 81
P+ Y +++ + + G P P
Sbjct: 50 PAAYVKKLDPAQSASRENLGGPPPVP 75
>4dy0_A GLIA-derived nexin; serpin, protease inhibitor, thrombin, cell
surface, hydrolas inhibitor; HET: IDS SGN; 2.35A {Homo
sapiens} PDB: 4dy7_C
Length = 379
Score = 24.9 bits (55), Expect = 9.3
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 24 NDKALPLETGNKVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFS 69
+ N V+ + + +N + EV + F
Sbjct: 83 KKNKDIVTVANAVFVKNASEIEVP---FVTRNKDVFQCEVRNVNFE 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.425
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,891,129
Number of extensions: 99981
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 60
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)