RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2586
(125 letters)
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 137 bits (347), Expect = 3e-40
Identities = 68/88 (77%), Positives = 80/88 (90%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWPH+++PLI VG+LVL++NP NYFAEVEQIAF PS++ PGIE SPDKMLQGRLF+YPD
Sbjct: 297 KVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPD 356
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
THRHRLGPNYL +PVNCP+ +VANYQR
Sbjct: 357 THRHRLGPNYLHIPVNCPYRARVANYQR 384
>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
1351]}
Length = 474
Score = 136 bits (343), Expect = 8e-40
Identities = 54/88 (61%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K +E+PLIEVG + L++NP NYFAEVEQ+ FSP + VPGIE SPDK+LQGRLF+Y D
Sbjct: 277 KTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGD 336
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
HRHR+G N QLP+N A V NYQ+
Sbjct: 337 AHRHRVGANSHQLPINQAKA-PVNNYQK 363
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 134 bits (339), Expect = 3e-39
Identities = 54/88 (61%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWPH ++PL++VG L++NP NYF++VEQ AFSP+++VPGI SPDKMLQGRLFSY D
Sbjct: 277 KVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGD 336
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
HR+RLG N+ Q+PVN P NY R
Sbjct: 337 AHRYRLGVNHHQIPVNAPKCP-FHNYHR 363
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 131 bits (330), Expect = 7e-38
Identities = 53/88 (60%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+W +++PL+EVG + L+KNP NYFAEVEQ AF+P+++VPGI SPD+MLQGRLFSY D
Sbjct: 282 KIWYTQDYPLMEVGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGD 341
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
THR+RLG NY Q+PVN P + R
Sbjct: 342 THRYRLGVNYPQIPVNKPRCP-FHSSSR 368
>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 488
Score = 130 bits (329), Expect = 9e-38
Identities = 53/89 (59%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
KVWP +FPL VG++VL++NP N+FA+VEQ AF+PS VP E S D +LQ RLFSY D
Sbjct: 284 KVWPQGQFPLRRVGKIVLNENPLNFFAQVEQAAFAPSTTVPYQEASADPVLQARLFSYAD 343
Query: 95 THRHRLGPNYLQLPVNCPFATKVAN-YQR 122
HR+RLGPN+ Q+PVNCP+A+K N R
Sbjct: 344 AHRYRLGPNFHQIPVNCPYASKFFNPAIR 372
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
1270]}
Length = 498
Score = 129 bits (326), Expect = 3e-37
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K +++P I+VG L L++NP N+FA++E AFSPS+ VPGI SPD+ML GR F+Y D
Sbjct: 281 KTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHD 340
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
+R+G + QLPVN P V NY
Sbjct: 341 AQLYRVGAHVNQLPVNRPKNA-VHNYAF 367
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 123 bits (309), Expect = 1e-34
Identities = 44/89 (49%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+ P P+ VG++VL++NP N+FAE EQ AF P H+VPG++ + D +LQGRLFSY D
Sbjct: 332 KLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTD 391
Query: 95 THRHRL-GPNYLQLPVNCPFATKVANYQR 122
T RL GPN+ ++P+N P N+QR
Sbjct: 392 TQISRLGGPNFHEIPINRPTCP-YHNFQR 419
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 116 bits (292), Expect = 1e-32
Identities = 47/88 (53%), Positives = 63/88 (71%), Gaps = 3/88 (3%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 94
K+WP + P ++GQ+VL+KN N+F E EQ+A +P++LVPGIEPS D++LQGR+FSY D
Sbjct: 277 KIWP--DVPEKKIGQMVLNKNVDNFFQETEQVAMAPANLVPGIEPSEDRLLQGRVFSYAD 334
Query: 95 THRHRLGPNYLQLPVNCPFATKVANYQR 122
T +RLG N L LPVN P V N +
Sbjct: 335 TQMYRLGANGLSLPVNQPKV-AVNNGNQ 361
>d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein,
N-terminal domain {Black sea rod (Plexaura homomalla)
[TaxId: 47982]}
Length = 366
Score = 97.3 bits (242), Expect = 7e-26
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 35 KVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKM-------LQG 87
+W P ++ ++ + S +E+ AF+ ++ + K +
Sbjct: 289 ILWDKETHPWFDLAKVSIKTPLSP--DVLEKTAFNIANQPASLGLLEAKSPEDYNSIGEL 346
Query: 88 RLFSYPDTHRHRLGPN 103
R+ Y R
Sbjct: 347 RVAVYTWVQHLRKLKI 362
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622
{Shewanella amazonensis [TaxId: 60478]}
Length = 144
Score = 23.7 bits (51), Expect = 6.5
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 57 SNYFAEVEQIAFSPSHLVPGIEPSPDKMLQ 86
+NY A +Q+A + V ++ P+ +L
Sbjct: 6 ANYRALAQQVADKVAGRVIALDRLPESLLT 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.425
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 468,439
Number of extensions: 19592
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 10
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.5 bits)