Query psy2587
Match_columns 210
No_of_seqs 86 out of 88
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 19:58:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01091 PTN_MK_C: PTN/MK hepa 99.9 1.1E-22 2.5E-27 147.7 1.2 57 58-114 2-63 (63)
2 PF01091 PTN_MK_C: PTN/MK hepa 99.8 1.3E-19 2.7E-24 131.8 1.0 49 103-151 2-51 (63)
3 smart00193 PTN Pleiotrophin / 99.5 8.1E-15 1.8E-19 111.0 1.6 48 44-91 29-80 (80)
4 smart00193 PTN Pleiotrophin / 99.4 6.4E-14 1.4E-18 106.2 2.6 65 64-136 3-80 (80)
5 PF00090 TSP_1: Thrombospondin 88.5 0.48 1E-05 30.0 2.6 41 108-148 2-46 (49)
6 smart00209 TSP1 Thrombospondin 85.1 1.3 2.8E-05 28.5 3.2 43 107-149 2-50 (53)
7 PF05196 PTN_MK_N: PTN/MK hepa 76.6 2 4.3E-05 31.6 2.0 23 58-82 12-37 (57)
8 KOG3539|consensus 68.2 3.9 8.5E-05 40.4 2.5 89 58-147 365-499 (508)
9 PF15240 Pro-rich: Proline-ric 56.4 7.6 0.00016 33.8 1.9 19 16-34 1-19 (179)
10 PF15240 Pro-rich: Proline-ric 46.5 12 0.00025 32.7 1.5 15 20-34 1-16 (179)
11 PF02950 Conotoxin: Conotoxin; 44.3 7.8 0.00017 27.2 0.1 30 19-48 6-35 (75)
12 PTZ00087 thrombosponding-relat 39.0 27 0.00059 33.0 2.8 42 64-106 236-282 (340)
13 PF06711 DUF1198: Protein of u 38.1 14 0.0003 31.5 0.7 15 16-30 1-15 (148)
14 PTZ00087 thrombosponding-relat 35.5 29 0.00064 32.8 2.4 52 93-148 222-279 (340)
15 KOG3539|consensus 31.4 24 0.00053 35.1 1.3 89 65-153 313-421 (508)
16 COG3462 Predicted membrane pro 31.2 20 0.00042 29.7 0.5 30 5-34 44-74 (117)
17 PF05360 YiaAB: yiaA/B two hel 31.0 50 0.0011 23.0 2.4 26 16-42 4-30 (53)
18 PRK14472 F0F1 ATP synthase sub 30.5 61 0.0013 26.4 3.3 9 4-12 10-18 (175)
19 PLN02710 farnesyltranstransfer 26.3 58 0.0012 31.6 2.8 66 2-72 106-172 (439)
20 PF08412 Ion_trans_N: Ion tran 23.0 99 0.0022 23.3 3.0 11 8-18 39-49 (77)
21 KOG4663|consensus 20.4 67 0.0015 28.9 1.8 23 5-27 100-123 (210)
22 PLN03201 RAB geranylgeranyl tr 20.1 73 0.0016 28.7 2.0 61 3-72 71-133 (316)
23 PF03823 Neurokinin_B: Neuroki 20.0 1.1E+02 0.0023 22.8 2.5 24 30-54 14-37 (59)
No 1
>PF01091 PTN_MK_C: PTN/MK heparin-binding protein family, C-terminal domain; InterPro: IPR020090 Several extracellular heparin-binding proteins involved in regulation of growth and differentiation belong to a new family of growth factors. These growth factors are highly related proteins of about 140 amino acids that contain 10 conserved cysteines probably involved in disulphide bonds, and include pleiotrophin [] (also known as heparin-binding growth-associated molecule HB-GAM, heparin-binding growth factor 8 HBGF-8, heparin-binding neutrophic factor HBNF and osteoblast specific protein OSF-1); midkine (MK) []; retinoic acid-induced heparin-binding protein (RIHB) []; and pleiotrophic factors alpha-1and -2 and beta-1 and -2 from Xenopus laevis, the homologs of midkine and pleiotrophin respectively. Pleiotrophin is a heparin-binding protein that has neurotrophic activity and has mitogenic activity towards fibroblasts. It is highly expressed in brain and uterus tissues, but is also found in gut, muscle and skin. It is thought to possess an important brain-specific function. Midkine is a regulator of differentiation whose expression is regulated by retinoic acid, and, like pleiotrophin, is a heparin-binding growth/differentiation factor that acts on fibroblasts and nerve cells.; GO: 0008083 growth factor activity; PDB: 1MKC_A.
Probab=99.85 E-value=1.1e-22 Score=147.69 Aligned_cols=57 Identities=44% Similarity=0.861 Sum_probs=17.9
Q ss_pred CCCCCCCCCcCCCCCCCCceeeeeeeccC-CCCcccceeeeecccccCccc----ccCCCcc
Q psy2587 58 QPCKYDKSSWSECDPNTHMKNRTLTLKKG-SPTTCEATKSISRKCKKACRY----EKGSWSQ 114 (210)
Q Consensus 58 ~dCkY~~g~WseCD~~Tn~kTRTgTLKKa-~~A~Cq~TvtvsKpCkKACRY----ekG~Wse 114 (210)
++|||.||+|||||++|||++|+++||++ ++++|++|++|+|||++.|++ +|+.|.+
T Consensus 2 ~~CrY~kg~W~eCd~~T~~rtRt~~LKk~~~~a~C~~t~titK~C~~~~k~k~~~~K~~gk~ 63 (63)
T PF01091_consen 2 ADCRYEKGAWSECDATTNTRTRTDTLKKALSDASCEPTRTITKPCKKKTKAKSKAKKGKGKD 63 (63)
T ss_dssp -----EE----SS-SSSSS----EE----SSSSS--SSS-----------------------
T ss_pred CccccccCCcccCcCcCCeEEeeeeecccccCCCCccceEEecccCCccccccccccccCCC
Confidence 58999999999999999999999999999 999999999999999999999 7777754
No 2
>PF01091 PTN_MK_C: PTN/MK heparin-binding protein family, C-terminal domain; InterPro: IPR020090 Several extracellular heparin-binding proteins involved in regulation of growth and differentiation belong to a new family of growth factors. These growth factors are highly related proteins of about 140 amino acids that contain 10 conserved cysteines probably involved in disulphide bonds, and include pleiotrophin [] (also known as heparin-binding growth-associated molecule HB-GAM, heparin-binding growth factor 8 HBGF-8, heparin-binding neutrophic factor HBNF and osteoblast specific protein OSF-1); midkine (MK) []; retinoic acid-induced heparin-binding protein (RIHB) []; and pleiotrophic factors alpha-1and -2 and beta-1 and -2 from Xenopus laevis, the homologs of midkine and pleiotrophin respectively. Pleiotrophin is a heparin-binding protein that has neurotrophic activity and has mitogenic activity towards fibroblasts. It is highly expressed in brain and uterus tissues, but is also found in gut, muscle and skin. It is thought to possess an important brain-specific function. Midkine is a regulator of differentiation whose expression is regulated by retinoic acid, and, like pleiotrophin, is a heparin-binding growth/differentiation factor that acts on fibroblasts and nerve cells.; GO: 0008083 growth factor activity; PDB: 1MKC_A.
Probab=99.76 E-value=1.3e-19 Score=131.83 Aligned_cols=49 Identities=57% Similarity=1.008 Sum_probs=17.1
Q ss_pred cCcccccCCCccCCcC-cceeeecccccccCccccccceeeeecCCCCCC
Q psy2587 103 KACRYEKGSWSQCSVA-GDMTRTDMLKEANSDANCEKSRTLTKKCKAKNS 151 (210)
Q Consensus 103 KACRYekG~WseCd~~-g~~TRtdkLK~a~~da~Cq~TRTVsKpCkkg~~ 151 (210)
.+|||+||+|||||++ ++|||+|+||+++++++||+||+|+|||+++..
T Consensus 2 ~~CrY~kg~W~eCd~~T~~rtRt~~LKk~~~~a~C~~t~titK~C~~~~k 51 (63)
T PF01091_consen 2 ADCRYEKGAWSECDATTNTRTRTDTLKKALSDASCEPTRTITKPCKKKTK 51 (63)
T ss_dssp -----EE----SS-SSSSS----EE----SSSSS--SSS-----------
T ss_pred CccccccCCcccCcCcCCeEEeeeeecccccCCCCccceEEecccCCccc
Confidence 4899999999999976 899999999999999999999999999999843
No 3
>smart00193 PTN Pleiotrophin / midkine family. Heparin-binding domain family.
Probab=99.48 E-value=8.1e-15 Score=111.03 Aligned_cols=48 Identities=38% Similarity=0.638 Sum_probs=44.8
Q ss_pred cceeeeeccCCCcc---CCCCCCCCCcCCCCCCCCceeeeeeeccC-CCCcc
Q psy2587 44 AHEVLIRNTRGAEK---QPCKYDKSSWSECDPNTHMKNRTLTLKKG-SPTTC 91 (210)
Q Consensus 44 dhevl~R~~rgakk---~dCkY~~g~WseCD~~Tn~kTRTgTLKKa-~~A~C 91 (210)
-..+-+|+|.++|+ +||+|+|++|+|||++|++++|+|+|||+ ++|+|
T Consensus 29 tkk~kCkiPCNwKK~fGadCKYkf~~WgeCD~~Tg~k~RsgtLKkal~na~C 80 (80)
T smart00193 29 TRKLKCKIPCNWKKQFGADCKYKFESWGECDANTGLKTRSGTLKKALYNADC 80 (80)
T ss_pred hheeeeeccccchhhcCcccceeccCccccccccCcccccchHHhhhhcCCC
Confidence 44567899999998 89999999999999999999999999999 99998
No 4
>smart00193 PTN Pleiotrophin / midkine family. Heparin-binding domain family.
Probab=99.42 E-value=6.4e-14 Score=106.20 Aligned_cols=65 Identities=32% Similarity=0.724 Sum_probs=54.5
Q ss_pred CCCcCCCCCCCC---ceeeeeeeccCCCCcccceeeeec---ccc------cCcccccCCCccCCcC-cceeeecccccc
Q psy2587 64 KSSWSECDPNTH---MKNRTLTLKKGSPTTCEATKSISR---KCK------KACRYEKGSWSQCSVA-GDMTRTDMLKEA 130 (210)
Q Consensus 64 ~g~WseCD~~Tn---~kTRTgTLKKa~~A~Cq~TvtvsK---pCk------KACRYekG~WseCd~~-g~~TRtdkLK~a 130 (210)
.++|+.|.|+.+ +..|++| |.+..+..| ||+ ..|+|.|++|+|||++ ++++|+++||+|
T Consensus 3 ew~~g~Cvp~~gDCG~G~REgT--------C~~~tkk~kCkiPCNwKK~fGadCKYkf~~WgeCD~~Tg~k~RsgtLKka 74 (80)
T smart00193 3 EWQWGPCIPNSKDCGLGTREGT--------CGQETRKLKCKIPCNWKKQFGADCKYKFESWGECDANTGLKTRSGTLKKA 74 (80)
T ss_pred ccccccccCCCCcccCcccccc--------hhhhhheeeeeccccchhhcCcccceeccCccccccccCcccccchHHhh
Confidence 678999999886 7788877 544433333 886 5999999999999976 999999999999
Q ss_pred cCcccc
Q psy2587 131 NSDANC 136 (210)
Q Consensus 131 ~~da~C 136 (210)
+++++|
T Consensus 75 l~na~C 80 (80)
T smart00193 75 LYNADC 80 (80)
T ss_pred hhcCCC
Confidence 999998
No 5
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....
Probab=88.55 E-value=0.48 Score=30.03 Aligned_cols=41 Identities=29% Similarity=0.572 Sum_probs=28.3
Q ss_pred ccCCCccCCcC---cceeeecccccc-cCccccccceeeeecCCC
Q psy2587 108 EKGSWSQCSVA---GDMTRTDMLKEA-NSDANCEKSRTLTKKCKA 148 (210)
Q Consensus 108 ekG~WseCd~~---g~~TRtdkLK~a-~~da~Cq~TRTVsKpCkk 148 (210)
+++.|++|+.. |.++|.-..... .....|.....-+++|..
T Consensus 2 ~Ws~Ws~CS~tCg~G~~~R~r~c~~~~~~~~~C~~~~~~~~~C~~ 46 (49)
T PF00090_consen 2 EWSEWSPCSATCGGGVQTRTRTCQSPPDGGESCPGPDQETRPCNM 46 (49)
T ss_dssp SBSS--SSSSSSSSEEEEEEECSCTTBTTSSTCHSCSEEEEEEEC
T ss_pred ccCcCCCCccccccCCceeEEEECcccCCCCCCCCCCcCcCccCc
Confidence 57999999865 677888877754 456778776666778743
No 6
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=85.11 E-value=1.3 Score=28.47 Aligned_cols=43 Identities=33% Similarity=0.540 Sum_probs=28.1
Q ss_pred cccCCCccCCcC---cceeeecccccc---cCccccccceeeeecCCCC
Q psy2587 107 YEKGSWSQCSVA---GDMTRTDMLKEA---NSDANCEKSRTLTKKCKAK 149 (210)
Q Consensus 107 YekG~WseCd~~---g~~TRtdkLK~a---~~da~Cq~TRTVsKpCkkg 149 (210)
.+++.|++|..+ |.++|+-..... .....|.......++|...
T Consensus 2 ~~ws~Ws~Cs~tCg~G~~~R~r~c~~~~~~~~~~~C~~~~~~~~~C~~~ 50 (53)
T smart00209 2 SEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQ 50 (53)
T ss_pred CCccCcccccCCCCCCeEEEEEecCCCCCCCCCCcCcCCCCEEeecCCC
Confidence 468999999864 566666543321 2467888766666777653
No 7
>PF05196 PTN_MK_N: PTN/MK heparin-binding protein family, N-terminal domain; InterPro: IPR020089 Several extracellular heparin-binding proteins involved in regulation of growth and differentiation belong to a new family of growth factors. These growth factors are highly related proteins of about 140 amino acids that contain 10 conserved cysteines probably involved in disulphide bonds, and include pleiotrophin [] (also known as heparin-binding growth-associated molecule HB-GAM, heparin-binding growth factor 8 HBGF-8, heparin-binding neutrophic factor HBNF and osteoblast specific protein OSF-1); midkine (MK) []; retinoic acid-induced heparin-binding protein (RIHB) []; and pleiotrophic factors alpha-1and -2 and beta-1 and -2 from Xenopus laevis, the homologs of midkine and pleiotrophin respectively. Pleiotrophin is a heparin-binding protein that has neurotrophic activity and has mitogenic activity towards fibroblasts. It is highly expressed in brain and uterus tissues, but is also found in gut, muscle and skin. It is thought to possess an important brain-specific function. Midkine is a regulator of differentiation whose expression is regulated by retinoic acid, and, like pleiotrophin, is a heparin-binding growth/differentiation factor that acts on fibroblasts and nerve cells.; GO: 0008083 growth factor activity; PDB: 1MKN_A.
Probab=76.64 E-value=2 Score=31.56 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=12.1
Q ss_pred CCCCCCCCCcCCCCCCCC---ceeeeee
Q psy2587 58 QPCKYDKSSWSECDPNTH---MKNRTLT 82 (210)
Q Consensus 58 ~dCkY~~g~WseCD~~Tn---~kTRTgT 82 (210)
++|- .++|+.|.|+++ +..|.+|
T Consensus 12 s~C~--eW~wg~CVpn~GDCG~G~REgt 37 (57)
T PF05196_consen 12 SECA--EWRWGPCVPNNGDCGLGFREGT 37 (57)
T ss_dssp ---S--SSEEE----SSSSSBS--EEEE
T ss_pred cCcc--ccEeecccCCCCcccCceeeec
Confidence 8895 999999999987 7888887
No 8
>KOG3539|consensus
Probab=68.18 E-value=3.9 Score=40.39 Aligned_cols=89 Identities=28% Similarity=0.499 Sum_probs=54.7
Q ss_pred CCCCCCC-CCcCCCCCCCC----ceee-eeeeccCCCCcccceeeeecccc-----------------------------
Q psy2587 58 QPCKYDK-SSWSECDPNTH----MKNR-TLTLKKGSPTTCEATKSISRKCK----------------------------- 102 (210)
Q Consensus 58 ~dCkY~~-g~WseCD~~Tn----~kTR-TgTLKKa~~A~Cq~TvtvsKpCk----------------------------- 102 (210)
.+|.... .+|++|...=| +++| ..---.+++-.|.+--+.-|.|.
T Consensus 365 ~eC~vs~ws~Ws~C~~sCGkg~r~R~R~yv~p~~a~~~~~~pe~~e~~~Cva~~c~~a~~~~~~~~~e~~e~~~~~~a~~ 444 (508)
T KOG3539|consen 365 LECEVSEWSQWSECSKSCGKGIRIRIRAYVNPIPASNGSCCPELVEEKKCVAKKCECAPSIQKLRNREAAESRRSENARK 444 (508)
T ss_pred ccceecccccchhhhhccCCCceEEEEEEecccccccCCCCcchhhhhhcccccccccchhhhhhhhhhhhccchhhccC
Confidence 6777655 68999977766 4444 22222345556666666666552
Q ss_pred -------cCcccc-cCCCccCCcC---cceeeecccccccCccccccceeeeecCC
Q psy2587 103 -------KACRYE-KGSWSQCSVA---GDMTRTDMLKEANSDANCEKSRTLTKKCK 147 (210)
Q Consensus 103 -------KACRYe-kG~WseCd~~---g~~TRtdkLK~a~~da~Cq~TRTVsKpCk 147 (210)
..||.. +++|+||... |.|+|.-+.++-..-..|.+. ++.|+|+
T Consensus 445 ~~~s~~~~~Cr~s~Ws~WseCs~sCG~G~~~R~rt~~n~~~r~~c~~~-t~~k~~~ 499 (508)
T KOG3539|consen 445 PSDSEQFPGCRVSPWSEWSECSKSCGGGIMERYRTVLNHFKRKQCPQF-TSCKKKK 499 (508)
T ss_pred CCCcccCCCCcccccchhhhhhhhcCCcceehhhhhhcccccccCcch-hhhhhcc
Confidence 137764 5999999753 799999998855444555432 3334433
No 9
>PF15240 Pro-rich: Proline-rich
Probab=56.37 E-value=7.6 Score=33.79 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy2587 16 MWGVFGTVLVLCLVSIINA 34 (210)
Q Consensus 16 ~~~~~~~~~~l~~v~~~~a 34 (210)
|.+|+|+|++|+|-+.-++
T Consensus 1 MLlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQST 19 (179)
T ss_pred ChhHHHHHHHHHhhhcccc
Confidence 4556665555544443344
No 10
>PF15240 Pro-rich: Proline-rich
Probab=46.53 E-value=12 Score=32.66 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=10.3
Q ss_pred HHHHH-HHHHHHHhhc
Q psy2587 20 FGTVL-VLCLVSIINA 34 (210)
Q Consensus 20 ~~~~~-~l~~v~~~~a 34 (210)
||++| .++|+|+.+|
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 44444 4777888888
No 11
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=44.26 E-value=7.8 Score=27.21 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcccccccccccceee
Q psy2587 19 VFGTVLVLCLVSIINANHAENWEENAHEVL 48 (210)
Q Consensus 19 ~~~~~~~l~~v~~~~a~~~e~w~e~dhevl 48 (210)
|++++|+|+....+...+++..++..++.+
T Consensus 6 vliVavLllt~~~~~~~~~~~~~~~~~~~~ 35 (75)
T PF02950_consen 6 VLIVAVLLLTTLATADLDGDQPADRPARRL 35 (75)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHhcccccccchhhhHHHH
Confidence 455555555412233336676666555533
No 12
>PTZ00087 thrombosponding-related protein; Provisional
Probab=39.03 E-value=27 Score=33.00 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=27.4
Q ss_pred CCCcCCCCCCCC----ceeeeeeeccCCCCccc-ceeeeecccccCcc
Q psy2587 64 KSSWSECDPNTH----MKNRTLTLKKGSPTTCE-ATKSISRKCKKACR 106 (210)
Q Consensus 64 ~g~WseCD~~Tn----~kTRTgTLKKa~~A~Cq-~TvtvsKpCkKACR 106 (210)
-++|++|+.+=+ +++|+-+=-.-. .+|. -....+++|+..|+
T Consensus 236 WSeWS~CSkTCGgggGVQtRtRtCTNPg-GdC~~G~s~ETr~CN~~cP 282 (340)
T PTZ00087 236 WGEWSNCSMECDHPDNVQIRERKCAHPS-GDCFKGDLKETRPCQVPLP 282 (340)
T ss_pred CCCCCCcCcccCCCCCeEeEEEeCCCCC-CCCCCCchhhcccccCCCC
Confidence 478999977655 677776653333 3784 55567778886643
No 13
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=38.14 E-value=14 Score=31.53 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy2587 16 MWGVFGTVLVLCLVS 30 (210)
Q Consensus 16 ~~~~~~~~~~l~~v~ 30 (210)
|+|+|+++|++|.|+
T Consensus 1 MiWimlAtlvVVFiv 15 (148)
T PF06711_consen 1 MIWIMLATLVVVFIV 15 (148)
T ss_pred CcHHHHHHHHHhhee
Confidence 789999999998754
No 14
>PTZ00087 thrombosponding-related protein; Provisional
Probab=35.52 E-value=29 Score=32.79 Aligned_cols=52 Identities=23% Similarity=0.409 Sum_probs=31.1
Q ss_pred ceeeeecccccCcccccCCCccCCcC-c----ceeeecccccccCccccc-cceeeeecCCC
Q psy2587 93 ATKSISRKCKKACRYEKGSWSQCSVA-G----DMTRTDMLKEANSDANCE-KSRTLTKKCKA 148 (210)
Q Consensus 93 ~TvtvsKpCkKACRYekG~WseCd~~-g----~~TRtdkLK~a~~da~Cq-~TRTVsKpCkk 148 (210)
|+-.+.|+ ..===++++|++|+.+ | +.+|+-+=-.+. .+|. -...-+++|+.
T Consensus 222 p~l~iek~--~~~WSeWSeWS~CSkTCGgggGVQtRtRtCTNPg--GdC~~G~s~ETr~CN~ 279 (340)
T PTZ00087 222 PSLIIEKK--NMFYTEWGEWSNCSMECDHPDNVQIRERKCAHPS--GDCFKGDLKETRPCQV 279 (340)
T ss_pred ceEEEEcC--CCCCCCCCCCCCcCcccCCCCCeEeEEEeCCCCC--CCCCCCchhhcccccC
Confidence 34444443 2233367999999865 4 678877665443 3784 44456666765
No 15
>KOG3539|consensus
Probab=31.45 E-value=24 Score=35.09 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=59.7
Q ss_pred CCcCCCCC--CCCceeeeeeeccCCCCcccceeeee------------cccccCcccc-cCCCccCCcC---cceeeec-
Q psy2587 65 SSWSECDP--NTHMKNRTLTLKKGSPTTCEATKSIS------------RKCKKACRYE-KGSWSQCSVA---GDMTRTD- 125 (210)
Q Consensus 65 g~WseCD~--~Tn~kTRTgTLKKa~~A~Cq~Tvtvs------------KpCkKACRYe-kG~WseCd~~---g~~TRtd- 125 (210)
++|.+|-. -..+.++.+.+|+-..-+|.+--... ..|+-.|... +.+|++|+.. +-|.|+-
T Consensus 313 s~FY~pks~~lpplAt~~l~r~~~~e~nc~edd~~~~~~~~~~~~~~~~e~p~eC~vs~ws~Ws~C~~sCGkg~r~R~R~ 392 (508)
T KOG3539|consen 313 SPFYDPKSKCLPPLATVQLRRKKLYELNCNEDDEQAEKCMNPTHLSAEHETPLECEVSEWSQWSECSKSCGKGIRIRIRA 392 (508)
T ss_pred ccccCcccccCCchhhhhHHHhhhhhhccCcchHHHhhhcCccccccccCCcccceecccccchhhhhccCCCceEEEEE
Confidence 44445533 33488899999988666887543322 2477888875 5999999864 5565555
Q ss_pred cccc-ccCccccccceeeeecCCCCCCcc
Q psy2587 126 MLKE-ANSDANCEKSRTLTKKCKAKNSGR 153 (210)
Q Consensus 126 kLK~-a~~da~Cq~TRTVsKpCkkg~~~~ 153 (210)
.+.- ..++..|.+--.-.|+|..++-.+
T Consensus 393 yv~p~~a~~~~~~pe~~e~~~Cva~~c~~ 421 (508)
T KOG3539|consen 393 YVNPIPASNGSCCPELVEEKKCVAKKCEC 421 (508)
T ss_pred EecccccccCCCCcchhhhhhcccccccc
Confidence 4443 466778888877888888875544
No 16
>COG3462 Predicted membrane protein [Function unknown]
Probab=31.18 E-value=20 Score=29.67 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=11.9
Q ss_pred CCccccchh-hHHHHHHHHHHHHHHHHHhhc
Q psy2587 5 GGYFGPYQD-IRMWGVFGTVLVLCLVSIINA 34 (210)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~~~~~l~~v~~~~a 34 (210)
|||||-|-. |-||-+.++++++.+..++.|
T Consensus 44 GG~yGm~lImpI~~~vvli~lvvfm~~~~g~ 74 (117)
T COG3462 44 GGLYGMWLIMPIFWAVVLIFLVVFMFYILGA 74 (117)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445553332 222223344444444444443
No 17
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=30.96 E-value=50 Score=22.97 Aligned_cols=26 Identities=31% Similarity=0.329 Sum_probs=17.8
Q ss_pred HHH-HHHHHHHHHHHHHhhccccccccc
Q psy2587 16 MWG-VFGTVLVLCLVSIINANHAENWEE 42 (210)
Q Consensus 16 ~~~-~~~~~~~l~~v~~~~a~~~e~w~e 42 (210)
++| .+++++++++|.+.++ +-+.||.
T Consensus 4 ~~~~~f~i~~~~~~iGl~~~-~~~l~~K 30 (53)
T PF05360_consen 4 QSWISFGISIVLMLIGLWNA-PLDLSEK 30 (53)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 566 5666677777888888 6666654
No 18
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=30.51 E-value=61 Score=26.45 Aligned_cols=9 Identities=44% Similarity=0.881 Sum_probs=7.5
Q ss_pred CCCccccch
Q psy2587 4 SGGYFGPYQ 12 (210)
Q Consensus 4 ~~~~~~~~~ 12 (210)
+||.|+|+-
T Consensus 10 ~~~~~~~~~ 18 (175)
T PRK14472 10 SGGLLSPNP 18 (175)
T ss_pred cCCccCCCH
Confidence 689999974
No 19
>PLN02710 farnesyltranstransferase subunit beta
Probab=26.32 E-value=58 Score=31.56 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=40.3
Q ss_pred CCCCCccc-cchhhHHHHHHHHHHHHHHHHHhhcccccccccccceeeeeccCCCccCCCCCCCCCcCCCCC
Q psy2587 2 NSSGGYFG-PYQDIRMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRNTRGAEKQPCKYDKSSWSECDP 72 (210)
Q Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~v~~~~a~~~e~w~e~dhevl~R~~rgakk~dCkY~~g~WseCD~ 72 (210)
+..|||-| |.|++-+...+.++++|+++- ..+.|+.-|.+.+++--..-+..+-.|..-.|+|-|.
T Consensus 106 ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg-----~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~ 172 (439)
T PLN02710 106 DPNGGYGGGPGQLPHLATTYAAVNTLVTIG-----GERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDV 172 (439)
T ss_pred CCCcCCCCCCCCCccHHHHHHHHHHHHHcC-----CchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCc
Confidence 34577754 778887777777766665442 2234555566666655544445566666667777665
No 20
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=22.97 E-value=99 Score=23.33 Aligned_cols=11 Identities=18% Similarity=0.618 Sum_probs=9.7
Q ss_pred cccchhhHHHH
Q psy2587 8 FGPYQDIRMWG 18 (210)
Q Consensus 8 ~~~~~~~~~~~ 18 (210)
.-||...|..|
T Consensus 39 IHP~S~fR~~W 49 (77)
T PF08412_consen 39 IHPFSKFRFYW 49 (77)
T ss_pred EcCCccHHHHH
Confidence 46999999999
No 21
>KOG4663|consensus
Probab=20.36 E-value=67 Score=28.87 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=14.8
Q ss_pred CCccccchhhHH-HHHHHHHHHHH
Q psy2587 5 GGYFGPYQDIRM-WGVFGTVLVLC 27 (210)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~l~ 27 (210)
|=|||+|..||- -|...+.+.|+
T Consensus 100 glyygsy~~pr~~~Wn~Gvii~lL 123 (210)
T KOG4663|consen 100 GLYYGSYRSPRETVWNKGVIILLL 123 (210)
T ss_pred hheEeeecccchhhhhhhHHHHHH
Confidence 669999999954 45444444443
No 22
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=20.08 E-value=73 Score=28.69 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=29.3
Q ss_pred CCCCcccc--chhhHHHHHHHHHHHHHHHHHhhcccccccccccceeeeeccCCCccCCCCCCCCCcCCCCC
Q psy2587 3 SSGGYFGP--YQDIRMWGVFGTVLVLCLVSIINANHAENWEENAHEVLIRNTRGAEKQPCKYDKSSWSECDP 72 (210)
Q Consensus 3 ~~~~~~~~--~~~~~~~~~~~~~~~l~~v~~~~a~~~e~w~e~dhevl~R~~rgakk~dCkY~~g~WseCD~ 72 (210)
..|| |++ .+++-+.-.+.++++|.++ .. +++-|.+.+++--..-++.+..+.-.+|+|.|.
T Consensus 71 ~~GG-F~~~~~~~~h~~~Ty~al~~L~ll---~~-----~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~ 133 (316)
T PLN03201 71 ESGG-FGGNTGHDPHILYTLSAVQILALF---DR-----LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDT 133 (316)
T ss_pred CCCC-cCCCCCCcccHHHHHHHHHHHHHh---hh-----hhhhhHHHHHHHHHHhcCCCCCccCCCCCCccH
Confidence 3444 443 3455554444444444433 11 333355444444333334555555557777765
No 23
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=20.02 E-value=1.1e+02 Score=22.79 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=15.8
Q ss_pred HHhhcccccccccccceeeeeccCC
Q psy2587 30 SIINANHAENWEENAHEVLIRNTRG 54 (210)
Q Consensus 30 ~~~~a~~~e~w~e~dhevl~R~~rg 54 (210)
+.+.. -+.+=||.+++|+-.-...
T Consensus 14 sla~s-~gavCeesQeQ~~p~gg~s 37 (59)
T PF03823_consen 14 SLARS-FGAVCEESQEQVVPGGGHS 37 (59)
T ss_pred HHHHH-hhhhhhhhhhccCCCCCcc
Confidence 44444 5677899999987654433
Done!