Query psy2587
Match_columns 210
No_of_seqs 86 out of 88
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 19:59:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mkc_A Protein (midkine); hepa 99.8 1.3E-21 4.3E-26 132.6 2.9 42 60-101 1-43 (43)
2 1mkc_A Protein (midkine); hepa 99.7 4.2E-19 1.4E-23 120.3 2.4 42 105-146 1-43 (43)
3 1lsl_A Thrombospondin 1; TSP-1 95.9 0.028 9.5E-07 41.1 7.3 85 64-148 8-110 (113)
4 3r6b_A Thrombospondin-1; cell 95.4 0.055 1.9E-06 42.1 7.4 91 58-148 10-119 (153)
5 1w0r_A Properdin, factor P; X- 93.4 0.15 5E-06 45.9 6.6 87 62-148 169-281 (442)
6 1w0r_A Properdin, factor P; X- 93.3 0.16 5.5E-06 45.6 6.6 88 62-149 112-224 (442)
7 3t5o_A Complement component C6 91.6 0.17 5.8E-06 49.4 4.9 85 64-148 8-108 (913)
8 1vex_A F-spondin; TSR, cell ad 89.3 0.47 1.6E-05 30.7 4.0 41 108-148 9-52 (56)
9 1vex_A F-spondin; TSR, cell ad 78.4 2.3 8E-05 27.3 3.6 44 59-102 4-51 (56)
10 3ojy_B Complement component C8 74.6 3.4 0.00012 38.3 4.9 53 100-152 6-62 (537)
11 3ojy_A Complement component C8 69.3 5.3 0.00018 37.4 4.9 55 98-152 2-60 (554)
12 3ojy_B Complement component C8 65.2 5.1 0.00018 37.2 3.9 50 58-107 9-64 (537)
13 1mkn_A Protein (midkine); hepa 63.9 4.9 0.00017 28.7 2.8 37 58-101 13-52 (59)
14 2bbx_A Trap, thrombospondin-re 61.8 8.5 0.00029 24.7 3.4 35 108-148 7-44 (49)
15 1lsl_A Thrombospondin 1; TSP-1 54.9 8.9 0.00031 27.6 2.9 41 108-148 7-53 (113)
16 1szl_A F-spondin; TSR, cell ad 53.1 12 0.0004 24.7 3.1 49 58-107 3-58 (61)
17 3ojy_A Complement component C8 48.2 12 0.00042 35.0 3.4 48 58-105 7-60 (554)
18 3r6b_A Thrombospondin-1; cell 46.3 14 0.00049 28.3 3.0 47 102-148 9-62 (153)
19 2rjq_A Adamts-5; metalloprotea 35.6 7.8 0.00027 33.5 0.0 52 65-116 313-375 (378)
20 4hqf_A Thrombospondin-related 20.4 21 0.00073 28.8 0.0 35 108-148 221-258 (281)
No 1
>1mkc_A Protein (midkine); heparin-binding growth factor; NMR {Synthetic} SCOP: g.5.1.2
Probab=99.83 E-value=1.3e-21 Score=132.65 Aligned_cols=42 Identities=38% Similarity=0.754 Sum_probs=41.5
Q ss_pred CCCCCCCcCCCCCCCCceeeeeeeccC-CCCcccceeeeeccc
Q psy2587 60 CKYDKSSWSECDPNTHMKNRTLTLKKG-SPTTCEATKSISRKC 101 (210)
Q Consensus 60 CkY~~g~WseCD~~Tn~kTRTgTLKKa-~~A~Cq~TvtvsKpC 101 (210)
|||+||+|+|||++||+++|+++|||| ++|+||+|++|||||
T Consensus 1 CkY~~~~W~eCD~~T~~ktRt~tLKkal~~a~C~~t~tvsKpC 43 (43)
T 1mkc_A 1 CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 43 (43)
T ss_dssp CCCEECCCCSSCSSSSSCCCCEECCCCSSSSSCCSSSCCCCCC
T ss_pred CCccccccccccCCCCeEEeeeeeecccccCcCCCcceecCCC
Confidence 999999999999999999999999999 899999999999998
No 2
>1mkc_A Protein (midkine); heparin-binding growth factor; NMR {Synthetic} SCOP: g.5.1.2
Probab=99.74 E-value=4.2e-19 Score=120.32 Aligned_cols=42 Identities=33% Similarity=0.787 Sum_probs=40.9
Q ss_pred cccccCCCccCCcC-cceeeecccccccCccccccceeeeecC
Q psy2587 105 CRYEKGSWSQCSVA-GDMTRTDMLKEANSDANCEKSRTLTKKC 146 (210)
Q Consensus 105 CRYekG~WseCd~~-g~~TRtdkLK~a~~da~Cq~TRTVsKpC 146 (210)
|||.||+|+|||++ |+++|+++||+++++++||+|++|+|||
T Consensus 1 CkY~~~~W~eCD~~T~~ktRt~tLKkal~~a~C~~t~tvsKpC 43 (43)
T 1mkc_A 1 CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 43 (43)
T ss_dssp CCCEECCCCSSCSSSSSCCCCEECCCCSSSSSCCSSSCCCCCC
T ss_pred CCccccccccccCCCCeEEeeeeeecccccCcCCCcceecCCC
Confidence 99999999999976 9999999999999999999999999999
No 3
>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1
Probab=95.93 E-value=0.028 Score=41.14 Aligned_cols=85 Identities=24% Similarity=0.483 Sum_probs=56.8
Q ss_pred CCCcCCCCCCCC--ceeeeeeeccC----CCCcccceeeeecccc-cCccc-----ccCCCccCCcC---cceeeecccc
Q psy2587 64 KSSWSECDPNTH--MKNRTLTLKKG----SPTTCEATKSISRKCK-KACRY-----EKGSWSQCSVA---GDMTRTDMLK 128 (210)
Q Consensus 64 ~g~WseCD~~Tn--~kTRTgTLKKa----~~A~Cq~TvtvsKpCk-KACRY-----ekG~WseCd~~---g~~TRtdkLK 128 (210)
-++|++|..+=+ +++|+-+.... ....|......+++|+ ..|.. ++++|++|..+ |.++|+-.-.
T Consensus 8 Ws~Ws~CS~tCG~G~~~R~R~C~~~~p~~~g~~C~g~~~e~~~C~~~~Cp~~g~w~~Ws~Ws~Cs~tCG~G~~~R~r~C~ 87 (113)
T 1lsl_A 8 WSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCN 87 (113)
T ss_dssp CCCCCCCSCSSSEEEEEEECCSCTTCCCTTSCCCCSCSEEEEEEECCCCCBCCCCCCCCCCCCCSCSSSCEEEEEECCSC
T ss_pred CCCCCCCcCcCCCceEEEEEEeCCCCCCCCCCcCCCCCceeeEcccccccccccccCcCCccCccCcCCCCeEEEEEEeC
Confidence 468999987644 66666655432 3457987777777776 35653 46899999864 6777776654
Q ss_pred cc---cCccccccceeeeecCCC
Q psy2587 129 EA---NSDANCEKSRTLTKKCKA 148 (210)
Q Consensus 129 ~a---~~da~Cq~TRTVsKpCkk 148 (210)
.. .+...|.-..+-++.|+.
T Consensus 88 ~~~p~~gg~~C~g~~~e~~~C~~ 110 (113)
T 1lsl_A 88 NPTPQFGGKDCVGDVTENQICNK 110 (113)
T ss_dssp TTCCBTTCCCCCSCSEEEEEECC
T ss_pred CCCcccCCCCCCCCCceEeccCC
Confidence 21 345678877777777765
No 4
>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens}
Probab=95.37 E-value=0.055 Score=42.12 Aligned_cols=91 Identities=23% Similarity=0.458 Sum_probs=58.7
Q ss_pred CCCCCCC-CCcCCCCCCC--Cceeeeeeecc----CCCCcccceeeeecccc-cCcc-----cccCCCccCCcC---cce
Q psy2587 58 QPCKYDK-SSWSECDPNT--HMKNRTLTLKK----GSPTTCEATKSISRKCK-KACR-----YEKGSWSQCSVA---GDM 121 (210)
Q Consensus 58 ~dCkY~~-g~WseCD~~T--n~kTRTgTLKK----a~~A~Cq~TvtvsKpCk-KACR-----YekG~WseCd~~---g~~ 121 (210)
.++.+.. ++|++|..+= ++++|+-+... .....|+.....+++|+ ..|. ..+++|++|..+ |.+
T Consensus 10 vdg~Ws~Ws~Ws~CS~tCG~G~~~R~r~C~~~~p~~~g~~C~g~~~~~~~C~~~~Cp~~~~w~~Ws~Ws~Cs~tCG~G~~ 89 (153)
T 3r6b_A 10 QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQ 89 (153)
T ss_dssp CCCCCCCCCCCCCCSCSSSEECCEEECCSCTTCCCTTCCCCCSCSEEECCEECSCCCBCCCCCCCCCCCCCSCSSSSEEE
T ss_pred cCCccCCCCCCCCCCCCCCCccEEEEEEeCCCCCCCccccCCCcceeeeccccccccccCccccccccCCCCCcCCCceE
Confidence 4555544 6799998753 45566655432 14567987777888886 4565 356889999864 567
Q ss_pred eeeccccc---ccCccccccceeeeecCCC
Q psy2587 122 TRTDMLKE---ANSDANCEKSRTLTKKCKA 148 (210)
Q Consensus 122 TRtdkLK~---a~~da~Cq~TRTVsKpCkk 148 (210)
+|+-.--. ..+...|.....-++.|..
T Consensus 90 ~R~r~C~~p~p~~gg~~C~g~~~e~~~C~~ 119 (153)
T 3r6b_A 90 KRSRLCNNPTPQFGGKDCVGDVTENQICNK 119 (153)
T ss_dssp EEECCSCTTCCBTTCCCCCSCSEEEEEECC
T ss_pred EEEEEeCCCCccCCCCCCCCCCccEeeeCC
Confidence 77765432 2346678776666666665
No 5
>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A
Probab=93.43 E-value=0.15 Score=45.92 Aligned_cols=87 Identities=18% Similarity=0.424 Sum_probs=58.3
Q ss_pred CCC-CCcCCCCCCC--Cc----eeeeeeeccC------CCCcccceeeeeccccc--Cccc-----ccCCCccCCcC---
Q psy2587 62 YDK-SSWSECDPNT--HM----KNRTLTLKKG------SPTTCEATKSISRKCKK--ACRY-----EKGSWSQCSVA--- 118 (210)
Q Consensus 62 Y~~-g~WseCD~~T--n~----kTRTgTLKKa------~~A~Cq~TvtvsKpCkK--ACRY-----ekG~WseCd~~--- 118 (210)
+.. ++|++|..+= ++ ++|+-+-... ....|......+++|+. .|.. .+++|++|..+
T Consensus 169 W~~Ws~WS~CS~tCG~G~~~~~q~R~r~C~~~~~~~~~~g~~C~g~~~e~~~C~~~~~Cp~~g~W~~Ws~WS~CS~tCG~ 248 (442)
T 1w0r_A 169 WATWGPWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVTCGL 248 (442)
T ss_pred cceecccccCCccCCCCCccCceEEEEEecCCCcCccCCCcCCCCCcceeEeecccCCcccccccccccccCCcCCccCC
Confidence 555 8999998753 34 6666665443 24578887778888864 2764 35889999864
Q ss_pred cceeeeccccc---ccCccccccceeeeecCCC
Q psy2587 119 GDMTRTDMLKE---ANSDANCEKSRTLTKKCKA 148 (210)
Q Consensus 119 g~~TRtdkLK~---a~~da~Cq~TRTVsKpCkk 148 (210)
|+++|+-.-.. ..+...|....+.++.|..
T Consensus 249 G~q~R~r~C~~~~p~~gg~~C~g~~~~~~~C~~ 281 (442)
T 1w0r_A 249 GQTMEQRTCNHPVPQHGGPFCAGDATRTHICNT 281 (442)
T ss_pred CceeeEEEeCCCCCCCCCCCCCCCCcceeeCCC
Confidence 67777765542 1346688877667777765
No 6
>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A
Probab=93.27 E-value=0.16 Score=45.63 Aligned_cols=88 Identities=18% Similarity=0.491 Sum_probs=58.8
Q ss_pred CCC-CCcCCCCCC--CCceeeeeeeccC---CCCcccceeeeecccc--cCcc----cc-cCCCccCCcC---cc----e
Q psy2587 62 YDK-SSWSECDPN--THMKNRTLTLKKG---SPTTCEATKSISRKCK--KACR----YE-KGSWSQCSVA---GD----M 121 (210)
Q Consensus 62 Y~~-g~WseCD~~--Tn~kTRTgTLKKa---~~A~Cq~TvtvsKpCk--KACR----Ye-kG~WseCd~~---g~----~ 121 (210)
+.. ++|++|..+ .++++|+-+-... ....|......+++|+ ..|. +. +++|++|..+ |. +
T Consensus 112 W~~W~~Ws~CS~tCG~G~q~R~r~C~~~~~~~~~~C~g~~~~~~~C~~~~~Cp~~~~W~~Ws~WS~CS~tCG~G~~~~~q 191 (442)
T 1w0r_A 112 WSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQQVCPTHGAWATWGPWTPCSASCHGGPHEPKE 191 (442)
T ss_pred eeeCCCCCCCCCCCCCCceEEEEEeCCcCCCCCCCCCCCcceecCCCCcCccccccccceecccccCCccCCCCCccCce
Confidence 443 889999764 4577777766543 3468987777777885 4665 33 3999999864 45 7
Q ss_pred eeeccccccc-----CccccccceeeeecCCCC
Q psy2587 122 TRTDMLKEAN-----SDANCEKSRTLTKKCKAK 149 (210)
Q Consensus 122 TRtdkLK~a~-----~da~Cq~TRTVsKpCkkg 149 (210)
+|+-.-.... ....|......+++|...
T Consensus 192 ~R~r~C~~~~~~~~~~g~~C~g~~~e~~~C~~~ 224 (442)
T 1w0r_A 192 TRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGL 224 (442)
T ss_pred EEEEEecCCCcCccCCCcCCCCCcceeEeeccc
Confidence 7776655321 456787766667777654
No 7
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=91.58 E-value=0.17 Score=49.43 Aligned_cols=85 Identities=18% Similarity=0.440 Sum_probs=48.5
Q ss_pred CCCcCCCCCC--CCceeeeeeeccC---CCCcccce--eeeeccc-----ccCcc-cccCCCccCCcC-cceeeeccccc
Q psy2587 64 KSSWSECDPN--THMKNRTLTLKKG---SPTTCEAT--KSISRKC-----KKACR-YEKGSWSQCSVA-GDMTRTDMLKE 129 (210)
Q Consensus 64 ~g~WseCD~~--Tn~kTRTgTLKKa---~~A~Cq~T--vtvsKpC-----kKACR-YekG~WseCd~~-g~~TRtdkLK~ 129 (210)
-++|++|..+ .++++|+-+.... ....|... ...+++| +..|. -++++|++|+.- |.++|+-....
T Consensus 8 Ws~Ws~CS~tCG~G~q~R~R~c~~~~~~~~~~C~~~c~~~e~~~C~~~~Cp~~c~w~~Ws~Ws~Cs~C~g~~~R~R~~~~ 87 (913)
T 3t5o_A 8 WTQWTSCSKTCNSGTQSRHRQIVVDKYYQENFCEQICSKQETRECNWQRCPINCLLGDFGPWSDCDPCIEKQSKVRSVLR 87 (913)
T ss_dssp BCCCCCCSCSSSCEEEEEEBCCCCCHHHHHTTHHHHCCCEEEEEECCSCCCBCCEECCCCCCCCCCSSSCEECCBCCEEE
T ss_pred CCCCccccCCCCCeeEEEEEEEccCCCCCCcCCCCcCcCceeeeeccccccccccccccCCccCCCCcccccceeeEecc
Confidence 4689999775 4566676665432 22345432 4455555 55555 357999999853 66666666532
Q ss_pred --ccCccccccceeeeecCCC
Q psy2587 130 --ANSDANCEKSRTLTKKCKA 148 (210)
Q Consensus 130 --a~~da~Cq~TRTVsKpCkk 148 (210)
..+...|.....-+++|..
T Consensus 88 ~~~~gg~~C~g~~~e~~~C~~ 108 (913)
T 3t5o_A 88 PSQFGGQPCTAPLVAFQPCIP 108 (913)
T ss_dssp CEETTCCCCCSCSBCCEECCC
T ss_pred CccCCCCCCCCCcccccccCC
Confidence 2334456644444455544
No 8
>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}
Probab=89.25 E-value=0.47 Score=30.70 Aligned_cols=41 Identities=34% Similarity=0.599 Sum_probs=29.4
Q ss_pred ccCCCccCCcC---cceeeecccccccCccccccceeeeecCCC
Q psy2587 108 EKGSWSQCSVA---GDMTRTDMLKEANSDANCEKSRTLTKKCKA 148 (210)
Q Consensus 108 ekG~WseCd~~---g~~TRtdkLK~a~~da~Cq~TRTVsKpCkk 148 (210)
++++|++|..+ |.++|+-..........|.....-+++|..
T Consensus 9 ~Ws~Ws~CS~tCG~G~~~R~R~C~~~~~~~~C~g~~~e~~~C~~ 52 (56)
T 1vex_A 9 PWSEWSDCSVTCGKGMRTRQRMLKSLAELGDCNEDLEQAEKCML 52 (56)
T ss_dssp CCCCCCCCSCSSBSCEEEEECCBCCTTCCCCCCCCSEEEEECCB
T ss_pred CCCCCCCcCccCCCCCEEEEEeccCCCCCCCCCCCCCeEeecCC
Confidence 57999999864 688888777644334678776666777764
No 9
>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}
Probab=78.44 E-value=2.3 Score=27.32 Aligned_cols=44 Identities=30% Similarity=0.587 Sum_probs=29.3
Q ss_pred CCCCC-CCCcCCCCCC--CCceeeeeeeccC-CCCcccceeeeecccc
Q psy2587 59 PCKYD-KSSWSECDPN--THMKNRTLTLKKG-SPTTCEATKSISRKCK 102 (210)
Q Consensus 59 dCkY~-~g~WseCD~~--Tn~kTRTgTLKKa-~~A~Cq~TvtvsKpCk 102 (210)
+|.+. -++|++|+.+ .++++|+-+.... ....|......+++|+
T Consensus 4 ~~~ws~Ws~Ws~CS~tCG~G~~~R~R~C~~~~~~~~C~g~~~e~~~C~ 51 (56)
T 1vex_A 4 PCLLSPWSEWSDCSVTCGKGMRTRQRMLKSLAELGDCNEDLEQAEKCM 51 (56)
T ss_dssp CCCBCCCCCCCCCSCSSBSCEEEEECCBCCTTCCCCCCCCSEEEEECC
T ss_pred CCcccCCCCCCCcCccCCCCCEEEEEeccCCCCCCCCCCCCCeEeecC
Confidence 45543 4689999865 4577777666554 3457877667777776
No 10
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=74.62 E-value=3.4 Score=38.33 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=37.1
Q ss_pred ccccCccc-ccCCCccCCc-Ccceeeecccccc--cCccccccceeeeecCCCCCCc
Q psy2587 100 KCKKACRY-EKGSWSQCSV-AGDMTRTDMLKEA--NSDANCEKSRTLTKKCKAKNSG 152 (210)
Q Consensus 100 pCkKACRY-ekG~WseCd~-~g~~TRtdkLK~a--~~da~Cq~TRTVsKpCkkg~~~ 152 (210)
||+-.|.. ++++|++|+. .+.++|+-.|-.+ .+...|.....-.++|.+-..|
T Consensus 6 ~~pv~C~~s~ws~Ws~C~~C~~~~~R~R~v~~p~q~gG~~C~~~l~d~~~C~~~~~C 62 (537)
T 3ojy_B 6 LMPIDCELSSWSSWTTCDPCQKKRYRYAYLLQPSQFHGEPCNFSDKEVEDCVTNRPC 62 (537)
T ss_dssp -CCBCCEECCCCCCCCCBTTTTEEEEECCEEECEETTCCCCCSCSEEEEECCCCCCC
T ss_pred CCCcccccCCCCCCCCCCCCCCceEeeeeeccccccCCCcCccchhhhccCCCcccc
Confidence 88999988 5799999996 3778888888643 3356777655566667654333
No 11
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=69.28 E-value=5.3 Score=37.42 Aligned_cols=55 Identities=13% Similarity=0.283 Sum_probs=38.7
Q ss_pred ecccccCccc-ccCCCccCCc-Ccceeeecccccc--cCccccccceeeeecCCCCCCc
Q psy2587 98 SRKCKKACRY-EKGSWSQCSV-AGDMTRTDMLKEA--NSDANCEKSRTLTKKCKAKNSG 152 (210)
Q Consensus 98 sKpCkKACRY-ekG~WseCd~-~g~~TRtdkLK~a--~~da~Cq~TRTVsKpCkkg~~~ 152 (210)
+.||+-.|.. ++++|++||. .+.++|+-.+-.. .+-..|.....-.++|.+-..|
T Consensus 2 ~~p~pv~C~~s~ws~Ws~C~~C~~~~~R~R~v~~p~q~gG~~C~~~l~d~~~C~~~~~c 60 (554)
T 3ojy_A 2 ATPAAVTCQLSNWSEWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTC 60 (554)
T ss_dssp CCCCCCCCEECCCCCCCCCCTTTCEEEEECCEEECBCSSCCCCCSCSEEEEECCCCCCC
T ss_pred CCCCCccCcCCCCCCCCCCCCCCCccEeeEeeccccccCCCCCCCccccccCCCCCCCC
Confidence 3489999998 5799999996 3677888888643 2356677665666677654333
No 12
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=65.24 E-value=5.1 Score=37.16 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=35.5
Q ss_pred CCCCCC-CCCcCCCCCCCCceeeeeeeccC---CCCcccceeeeecccc--cCccc
Q psy2587 58 QPCKYD-KSSWSECDPNTHMKNRTLTLKKG---SPTTCEATKSISRKCK--KACRY 107 (210)
Q Consensus 58 ~dCkY~-~g~WseCD~~Tn~kTRTgTLKKa---~~A~Cq~TvtvsKpCk--KACRY 107 (210)
.+|... .++|++||+-++.+.|+-.+-.- .+..|.......++|. +.|..
T Consensus 9 v~C~~s~ws~Ws~C~~C~~~~~R~R~v~~p~q~gG~~C~~~l~d~~~C~~~~~C~~ 64 (537)
T 3ojy_B 9 IDCELSSWSSWTTCDPCQKKRYRYAYLLQPSQFHGEPCNFSDKEVEDCVTNRPCRS 64 (537)
T ss_dssp BCCEECCCCCCCCCBTTTTEEEEECCEEECEETTCCCCCSCSEEEEECCCCCCCCC
T ss_pred cccccCCCCCCCCCCCCCCceEeeeeeccccccCCCcCccchhhhccCCCcccccc
Confidence 566664 58999999877877887777544 4678887767777773 55643
No 13
>1mkn_A Protein (midkine); heparin-binding growth factor; NMR {Synthetic} SCOP: g.5.1.1
Probab=63.95 E-value=4.9 Score=28.67 Aligned_cols=37 Identities=19% Similarity=0.455 Sum_probs=26.2
Q ss_pred CCCCCCCCCcCCCCCCCC---ceeeeeeeccCCCCcccceeeeeccc
Q psy2587 58 QPCKYDKSSWSECDPNTH---MKNRTLTLKKGSPTTCEATKSISRKC 101 (210)
Q Consensus 58 ~dCkY~~g~WseCD~~Tn---~kTRTgTLKKa~~A~Cq~TvtvsKpC 101 (210)
++|- .+.|+.|.++.+ +..|.+|-+ ++++ ++....||
T Consensus 13 ~eC~--ew~~g~Cvp~~gDCG~G~RegTc~----~qt~-~ikCkiPC 52 (59)
T 1mkn_A 13 SECA--EWAWGPCTPSSKDCGVGFREGTCG----AQTQ-RIRCRVPC 52 (59)
T ss_dssp CCCS--SSEEECCCCSSSSSBSCCEEEESS----SCCE-EECCCBCC
T ss_pred cccc--CceeccccCCcCcccccccccchh----hhce-eeEEecCc
Confidence 6887 899999999887 888998842 3443 44444455
No 14
>2bbx_A Trap, thrombospondin-related anonymous protein; elongated three-stranded structure, cell adhesion; NMR {Plasmodium falciparum}
Probab=61.78 E-value=8.5 Score=24.70 Aligned_cols=35 Identities=26% Similarity=0.659 Sum_probs=23.4
Q ss_pred ccCCCccCCcC---cceeeecccccccCccccccceeeeecCCC
Q psy2587 108 EKGSWSQCSVA---GDMTRTDMLKEANSDANCEKSRTLTKKCKA 148 (210)
Q Consensus 108 ekG~WseCd~~---g~~TRtdkLK~a~~da~Cq~TRTVsKpCkk 148 (210)
++++|++|..+ |.++|+-.-. ++.|... .++.|+.
T Consensus 7 ~Ws~Ws~CS~tCG~G~~~R~r~C~----~~~C~g~--~~~~C~~ 44 (49)
T 2bbx_A 7 VWDEWSPCSVTCGKGTRSRKREIL----HEGCTSE--IQEQCEE 44 (49)
T ss_dssp CCCCCCCCSSSSSSSEEEEECCCS----STTSCCE--EEEECCC
T ss_pred CCCCcccccCcCCCCeEEEEeeeC----CCCCCCC--eeEeeCC
Confidence 46899999864 6778876554 2367664 4566654
No 15
>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1
Probab=54.93 E-value=8.9 Score=27.61 Aligned_cols=41 Identities=34% Similarity=0.605 Sum_probs=28.6
Q ss_pred ccCCCccCCcC---cceeeeccccc---ccCccccccceeeeecCCC
Q psy2587 108 EKGSWSQCSVA---GDMTRTDMLKE---ANSDANCEKSRTLTKKCKA 148 (210)
Q Consensus 108 ekG~WseCd~~---g~~TRtdkLK~---a~~da~Cq~TRTVsKpCkk 148 (210)
++++|++|..+ |.++|+-.... ......|......+++|..
T Consensus 7 ~Ws~Ws~CS~tCG~G~~~R~R~C~~~~p~~~g~~C~g~~~e~~~C~~ 53 (113)
T 1lsl_A 7 HWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKK 53 (113)
T ss_dssp CCCCCCCCSCSSSEEEEEEECCSCTTCCCTTSCCCCSCSEEEEEEEC
T ss_pred CCCCCCCCcCcCCCceEEEEEEeCCCCCCCCCCcCCCCCceeeEccc
Confidence 46899999865 67788776653 2345678876666777765
No 16
>1szl_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}
Probab=53.13 E-value=12 Score=24.69 Aligned_cols=49 Identities=27% Similarity=0.556 Sum_probs=28.8
Q ss_pred CCCCC-CCCCcCCCC-CCCC--ceeeeeeeccC--CCCcccceeeeeccccc-Cccc
Q psy2587 58 QPCKY-DKSSWSECD-PNTH--MKNRTLTLKKG--SPTTCEATKSISRKCKK-ACRY 107 (210)
Q Consensus 58 ~dCkY-~~g~WseCD-~~Tn--~kTRTgTLKKa--~~A~Cq~TvtvsKpCkK-ACRY 107 (210)
.+|.+ .-++|++|. .+=+ +++|+-+.... ....|.... .+++|+. .|..
T Consensus 3 ~~C~ws~Ws~Ws~CS~~tCG~G~~~R~R~c~~p~~gg~~C~g~~-e~~~C~~~~Cp~ 58 (61)
T 1szl_A 3 ETCIYSNWSPWSACSSSTCEKGKRMRQRMLKAQLDLSVPCPDTQ-DFQPCMGPGCSD 58 (61)
T ss_dssp SSEEECSCCCCCCCSCSSSSCEECCEECCEEEESCTTSCCCTTE-ECCEECCTTCCS
T ss_pred ccCCcCCCCCCCCCCCccCCCCeeEEEeeccccCCCCCCCCCcc-ceeEeCcCCCcC
Confidence 35554 357899998 3433 44555444321 345787777 7777864 5654
No 17
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=48.23 E-value=12 Score=34.95 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=33.9
Q ss_pred CCCCCC-CCCcCCCCCCCCceeeeeeeccC---CCCcccceeeeecccc--cCc
Q psy2587 58 QPCKYD-KSSWSECDPNTHMKNRTLTLKKG---SPTTCEATKSISRKCK--KAC 105 (210)
Q Consensus 58 ~dCkY~-~g~WseCD~~Tn~kTRTgTLKKa---~~A~Cq~TvtvsKpCk--KAC 105 (210)
.+|... .++|++||+=++.+.|+-.+-.- .+..|.......++|. +.|
T Consensus 7 v~C~~s~ws~Ws~C~~C~~~~~R~R~v~~p~q~gG~~C~~~l~d~~~C~~~~~c 60 (554)
T 3ojy_A 7 VTCQLSNWSEWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTC 60 (554)
T ss_dssp CCCEECCCCCCCCCCTTTCEEEEECCEEECBCSSCCCCCSCSEEEEECCCCCCC
T ss_pred ccCcCCCCCCCCCCCCCCCccEeeEeeccccccCCCCCCCccccccCCCCCCCC
Confidence 567664 58999999877777777666433 4577988777777783 455
No 18
>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens}
Probab=46.27 E-value=14 Score=28.33 Aligned_cols=47 Identities=30% Similarity=0.529 Sum_probs=30.6
Q ss_pred ccCccc-ccCCCccCCcC---cceeeeccccc---ccCccccccceeeeecCCC
Q psy2587 102 KKACRY-EKGSWSQCSVA---GDMTRTDMLKE---ANSDANCEKSRTLTKKCKA 148 (210)
Q Consensus 102 kKACRY-ekG~WseCd~~---g~~TRtdkLK~---a~~da~Cq~TRTVsKpCkk 148 (210)
+-.+-+ ++++|++|..+ |.++|+-.... ......|+....-+++|..
T Consensus 9 pvdg~Ws~Ws~Ws~CS~tCG~G~~~R~r~C~~~~p~~~g~~C~g~~~~~~~C~~ 62 (153)
T 3r6b_A 9 LQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKK 62 (153)
T ss_dssp CCCCCCCCCCCCCCCSCSSSEECCEEECCSCTTCCCTTCCCCCSCSEEECCEEC
T ss_pred ccCCccCCCCCCCCCCCCCCCccEEEEEEeCCCCCCCccccCCCcceeeecccc
Confidence 334443 46899999865 67777766542 2345678876667777765
No 19
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=35.60 E-value=7.8 Score=33.54 Aligned_cols=52 Identities=19% Similarity=0.459 Sum_probs=0.0
Q ss_pred CCcCCCCCC--CCceeeeeeeccC----CCCcccceeeeeccccc-Ccc----cccCCCccCC
Q psy2587 65 SSWSECDPN--THMKNRTLTLKKG----SPTTCEATKSISRKCKK-ACR----YEKGSWSQCS 116 (210)
Q Consensus 65 g~WseCD~~--Tn~kTRTgTLKKa----~~A~Cq~TvtvsKpCkK-ACR----YekG~WseCd 116 (210)
++|++|..+ .++++|+.+-... ....|.-..+..++|+. .|. =.+.+|++|.
T Consensus 313 s~ws~Cs~tCG~G~~~r~R~C~~~~p~~gg~~C~g~~~~~~~C~~~~Cp~~~~~~~~~ws~c~ 375 (378)
T 2rjq_A 313 GSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRYCTGKRAIYRSCSLMPCPPNGKSFGSAWSHPQ 375 (378)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCCCcCCcCCCCcEEeeeccCCCCCCCCCCCCCCCCeEEeecCCCCCcCCCCCcccccCCCC
Confidence 457789764 3455555443221 23479877777777753 454 2357899885
No 20
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=20.36 E-value=21 Score=28.75 Aligned_cols=35 Identities=29% Similarity=0.670 Sum_probs=0.0
Q ss_pred ccCCCccCCcC---cceeeecccccccCccccccceeeeecCCC
Q psy2587 108 EKGSWSQCSVA---GDMTRTDMLKEANSDANCEKSRTLTKKCKA 148 (210)
Q Consensus 108 ekG~WseCd~~---g~~TRtdkLK~a~~da~Cq~TRTVsKpCkk 148 (210)
.+++|++|..+ |..+|+-.-. +..|... ..+.|..
T Consensus 221 ~w~~ws~Cs~~cg~g~~~r~r~c~----~~~c~~~--~~~~C~~ 258 (281)
T 4hqf_A 221 VWDEWSPCSVTCGKGTRSRKREIL----HEGCTSE--LQEQCEE 258 (281)
T ss_dssp --------------------------------------------
T ss_pred CCCCCCccccccCCCcceEEEecC----CCCCCCC--eeeeeCC
Confidence 67999999854 6777765443 2357655 4445543
Done!