RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2587
         (210 letters)



>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor,
           C-terminal domain {Synthetic}
          Length = 43

 Score = 41.0 bits (96), Expect = 2e-06
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 60  CKYDKSSWSECDPNTHMKNRTLTLKKG-SPTTCEATKSISRKC 101
           CKY   +W  CD  T  K R  TLKK      C+ T  +++ C
Sbjct: 1   CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 43



 Score = 34.4 bits (79), Expect = 5e-04
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 105 CRYEKGSWSQCSVA-GDMTRTDMLKEANSDANCEKSRTLTKKC 146
           C+Y+  +W  C    G   R   LK+A  +A C+++  +TK C
Sbjct: 1   CKYKFENWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 43


>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 23.7 bits (51), Expect = 9.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 180 ARHLGLSGSLIDRHTRSNGRPTRSSERDW 208
            + LGLS   IDR    NGR  R ++   
Sbjct: 20  VKRLGLSDHEIDRLELQNGRCLREAQYSM 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.401 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 763,739
Number of extensions: 32412
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 16
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)