Query psy259
Match_columns 398
No_of_seqs 318 out of 1547
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:03:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00066 pyruvate kinase; Prov 100.0 2E-100 5E-105 792.6 38.0 351 31-389 18-513 (513)
2 KOG2323|consensus 100.0 1.6E-99 3E-104 775.9 31.7 355 31-388 1-501 (501)
3 PLN02762 pyruvate kinase compl 100.0 3.8E-98 8E-103 775.9 35.9 275 106-389 230-509 (509)
4 PLN02461 Probable pyruvate kin 100.0 1.2E-96 3E-101 765.1 37.7 277 106-388 221-510 (511)
5 COG0469 PykF Pyruvate kinase [ 100.0 9.6E-97 2E-101 758.3 33.5 274 106-388 202-477 (477)
6 PLN02765 pyruvate kinase 100.0 8.8E-95 1.9E-99 751.7 34.9 277 106-389 234-525 (526)
7 PRK09206 pyruvate kinase; Prov 100.0 2E-94 4.2E-99 744.1 36.0 271 106-388 199-470 (470)
8 PRK06247 pyruvate kinase; Prov 100.0 1.4E-93 3E-98 737.6 36.5 271 106-389 200-471 (476)
9 PRK06354 pyruvate kinase; Prov 100.0 4.5E-93 9.8E-98 751.8 35.3 273 106-389 205-479 (590)
10 cd00288 Pyruvate_Kinase Pyruva 100.0 2.8E-91 6.2E-96 723.7 37.4 280 106-388 201-480 (480)
11 PRK05826 pyruvate kinase; Prov 100.0 1.2E-89 2.7E-94 709.2 34.3 260 106-376 200-461 (465)
12 PLN02623 pyruvate kinase 100.0 3.1E-86 6.7E-91 692.8 35.6 272 106-388 305-579 (581)
13 PTZ00300 pyruvate kinase; Prov 100.0 2.2E-86 4.8E-91 681.8 31.5 294 93-389 145-454 (454)
14 TIGR01064 pyruv_kin pyruvate k 100.0 1.7E-82 3.6E-87 659.2 33.6 273 106-385 198-473 (473)
15 PF00224 PK: Pyruvate kinase, 100.0 1.2E-66 2.5E-71 522.7 14.6 146 106-253 203-348 (348)
16 PRK06739 pyruvate kinase; Vali 100.0 1.2E-65 2.6E-70 513.9 19.6 140 106-247 192-332 (352)
17 PRK14725 pyruvate kinase; Prov 100.0 7.6E-54 1.6E-58 449.2 16.5 133 106-246 458-596 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 1.6E-51 3.5E-56 427.4 17.4 133 106-246 338-479 (493)
19 PF02887 PK_C: Pyruvate kinase 100.0 7.8E-32 1.7E-36 230.9 14.3 116 267-387 1-117 (117)
20 COG3836 HpcH 2,4-dihydroxyhept 99.3 7.8E-12 1.7E-16 118.9 7.1 144 57-224 71-240 (255)
21 PRK10558 alpha-dehydro-beta-de 99.2 5E-11 1.1E-15 115.8 7.6 155 48-224 64-241 (256)
22 TIGR03239 GarL 2-dehydro-3-deo 99.2 5.2E-11 1.1E-15 115.3 7.3 154 49-224 58-234 (249)
23 PRK10128 2-keto-3-deoxy-L-rham 99.1 1.1E-10 2.4E-15 114.1 6.6 151 48-224 63-241 (267)
24 TIGR02311 HpaI 2,4-dihydroxyhe 98.9 2.5E-09 5.3E-14 103.6 6.2 95 116-224 133-235 (249)
25 PRK06464 phosphoenolpyruvate s 98.5 3.6E-07 7.9E-12 101.5 10.4 122 105-247 649-791 (795)
26 PF03328 HpcH_HpaI: HpcH/HpaI 98.5 6.5E-08 1.4E-12 91.4 3.2 78 105-184 97-189 (221)
27 TIGR01418 PEP_synth phosphoeno 98.4 1E-06 2.2E-11 97.8 11.5 119 106-245 643-782 (782)
28 PRK11177 phosphoenolpyruvate-p 98.1 4.6E-06 1E-10 89.8 7.6 90 120-220 421-526 (575)
29 TIGR01417 PTS_I_fam phosphoeno 98.1 7.9E-06 1.7E-10 87.8 7.6 104 120-243 420-539 (565)
30 TIGR01588 citE citrate lyase, 97.8 2.6E-05 5.6E-10 77.1 5.8 90 120-219 118-220 (288)
31 PF02896 PEP-utilizers_C: PEP- 96.7 0.0042 9.1E-08 62.0 7.1 103 106-221 150-279 (293)
32 PF00478 IMPDH: IMP dehydrogen 96.4 0.031 6.6E-07 57.2 11.2 130 53-220 98-240 (352)
33 TIGR01305 GMP_reduct_1 guanosi 96.0 0.11 2.4E-06 52.8 12.8 133 54-220 98-241 (343)
34 cd00480 malate_synt Malate syn 95.9 0.011 2.4E-07 63.2 5.6 106 106-219 198-344 (511)
35 cd00727 malate_synt_A Malate s 95.6 0.033 7.2E-07 59.5 7.5 107 106-219 198-344 (511)
36 TIGR01344 malate_syn_A malate 95.0 0.044 9.6E-07 58.5 6.0 107 106-219 199-345 (511)
37 PRK08649 inosine 5-monophospha 95.0 0.14 3E-06 52.8 9.5 93 108-220 177-285 (368)
38 COG2301 CitE Citrate lyase bet 94.8 0.035 7.5E-07 55.2 4.5 106 106-219 94-212 (283)
39 PLN02274 inosine-5'-monophosph 94.5 0.57 1.2E-05 50.2 13.1 127 57-220 242-380 (505)
40 PTZ00314 inosine-5'-monophosph 94.5 0.37 8E-06 51.5 11.6 127 57-221 235-374 (495)
41 PRK07107 inosine 5-monophospha 94.1 0.78 1.7E-05 49.2 13.2 132 54-220 234-381 (502)
42 TIGR01302 IMP_dehydrog inosine 94.1 0.99 2.1E-05 47.5 13.8 130 56-220 217-356 (450)
43 PRK09255 malate synthase; Vali 94.0 0.13 2.8E-06 55.3 6.8 105 106-219 219-365 (531)
44 PRK05096 guanosine 5'-monophos 93.9 0.76 1.7E-05 46.9 11.8 129 57-220 102-242 (346)
45 TIGR01306 GMP_reduct_2 guanosi 93.8 0.93 2E-05 46.0 12.3 128 54-220 85-227 (321)
46 PRK07807 inosine 5-monophospha 93.6 0.6 1.3E-05 49.8 11.1 126 58-220 222-359 (479)
47 cd00381 IMPDH IMPDH: The catal 93.6 0.94 2E-05 45.8 12.0 129 54-220 85-226 (325)
48 PLN02626 malate synthase 93.1 0.3 6.6E-06 52.5 7.9 99 120-220 244-372 (551)
49 PRK11061 fused phosphoenolpyru 92.7 0.17 3.6E-06 56.7 5.5 103 122-244 589-707 (748)
50 PRK08227 autoinducer 2 aldolas 91.8 2.4 5.2E-05 41.9 11.8 148 138-309 48-196 (264)
51 COG0434 SgcQ Predicted TIM-bar 91.5 1.8 3.9E-05 42.3 10.2 90 204-307 38-143 (263)
52 PRK06843 inosine 5-monophospha 91.0 2.6 5.5E-05 44.2 11.6 130 54-220 144-285 (404)
53 COG1751 Uncharacterized conser 90.4 2.6 5.6E-05 38.7 9.6 108 265-376 10-155 (186)
54 TIGR01304 IMP_DH_rel_2 IMP deh 89.9 1.1 2.4E-05 46.2 7.8 82 122-220 188-284 (369)
55 PRK05567 inosine 5'-monophosph 89.9 3.1 6.6E-05 44.3 11.3 132 54-220 219-360 (486)
56 TIGR01303 IMP_DH_rel_1 IMP deh 89.8 3.4 7.4E-05 44.0 11.6 129 56-221 218-358 (475)
57 PRK05458 guanosine 5'-monophos 89.1 3.6 7.7E-05 41.9 10.6 133 53-221 85-231 (326)
58 PRK13397 3-deoxy-7-phosphohept 88.9 2 4.3E-05 42.2 8.4 76 122-220 79-156 (250)
59 PRK06852 aldolase; Validated 87.5 2.1 4.6E-05 43.1 7.8 107 197-309 112-234 (304)
60 COG1830 FbaB DhnA-type fructos 85.4 13 0.00028 36.9 11.7 165 120-310 21-207 (265)
61 COG1080 PtsA Phosphoenolpyruva 84.7 2.6 5.7E-05 45.7 7.2 68 121-188 423-506 (574)
62 PRK13398 3-deoxy-7-phosphohept 84.2 20 0.00043 35.4 12.6 144 58-234 32-184 (266)
63 TIGR02751 PEPCase_arch phospho 83.8 3.5 7.6E-05 44.3 7.6 63 122-184 173-247 (506)
64 PRK07565 dihydroorotate dehydr 83.4 16 0.00035 36.8 12.0 167 52-248 102-291 (334)
65 TIGR01361 DAHP_synth_Bsub phos 83.4 13 0.00027 36.6 10.8 88 107-220 78-166 (260)
66 PRK09250 fructose-bisphosphate 81.2 5.3 0.00012 41.0 7.5 134 134-288 89-236 (348)
67 TIGR00343 pyridoxal 5'-phospha 81.1 48 0.001 33.3 13.8 107 104-246 56-166 (287)
68 PRK12595 bifunctional 3-deoxy- 80.1 19 0.00041 37.1 11.1 89 106-220 170-259 (360)
69 cd04737 LOX_like_FMN L-Lactate 79.9 21 0.00046 36.7 11.4 91 105-220 211-305 (351)
70 cd02811 IDI-2_FMN Isopentenyl- 79.7 22 0.00047 35.9 11.3 31 179-221 255-285 (326)
71 cd00945 Aldolase_Class_I Class 79.1 46 0.001 29.6 12.9 155 131-315 11-182 (201)
72 PRK14045 1-aminocyclopropane-1 79.0 52 0.0011 33.0 13.8 46 270-315 167-221 (329)
73 cd00640 Trp-synth-beta_II Tryp 79.0 47 0.001 31.3 12.9 119 169-313 63-188 (244)
74 TIGR01828 pyru_phos_dikin pyru 78.8 5.4 0.00012 45.6 7.3 88 122-220 732-850 (856)
75 COG3605 PtsP Signal transducti 78.1 3.7 8E-05 44.9 5.4 107 122-245 597-719 (756)
76 COG0574 PpsA Phosphoenolpyruva 75.8 7.8 0.00017 43.6 7.4 88 122-220 624-723 (740)
77 PRK13655 phosphoenolpyruvate c 75.4 8.7 0.00019 41.3 7.3 63 122-184 163-239 (494)
78 PLN02591 tryptophan synthase 75.3 37 0.00079 33.3 11.1 97 106-220 119-218 (250)
79 cd00959 DeoC 2-deoxyribose-5-p 74.7 26 0.00056 32.7 9.6 87 197-295 66-155 (203)
80 PRK07565 dihydroorotate dehydr 74.1 90 0.0019 31.4 14.0 90 122-223 101-200 (334)
81 TIGR02708 L_lactate_ox L-lacta 74.0 17 0.00037 37.6 8.9 90 105-221 218-313 (367)
82 TIGR01037 pyrD_sub1_fam dihydr 73.0 68 0.0015 31.5 12.6 105 122-246 157-283 (300)
83 PLN02495 oxidoreductase, actin 72.9 35 0.00077 35.5 10.9 170 38-223 9-217 (385)
84 PRK06015 keto-hydroxyglutarate 72.5 22 0.00048 33.8 8.5 73 130-219 38-123 (201)
85 cd04724 Tryptophan_synthase_al 71.8 29 0.00062 33.5 9.4 105 63-185 15-135 (242)
86 PRK00694 4-hydroxy-3-methylbut 71.7 20 0.00044 39.2 9.0 158 64-249 47-233 (606)
87 COG1646 Predicted phosphate-bi 71.6 8.1 0.00018 37.7 5.4 171 125-323 18-211 (240)
88 PRK04180 pyridoxal biosynthesi 71.4 63 0.0014 32.6 11.8 108 104-246 63-173 (293)
89 cd02922 FCB2_FMN Flavocytochro 70.6 63 0.0014 33.1 11.9 91 105-220 203-300 (344)
90 PRK02048 4-hydroxy-3-methylbut 70.5 25 0.00054 38.7 9.4 157 64-244 43-224 (611)
91 cd04736 MDH_FMN Mandelate dehy 70.1 31 0.00067 35.7 9.6 90 105-221 226-319 (361)
92 cd00958 DhnA Class I fructose- 69.7 36 0.00079 32.1 9.5 81 136-221 80-164 (235)
93 PF00899 ThiF: ThiF family; I 69.6 19 0.00042 31.0 7.0 111 58-185 8-123 (135)
94 cd00408 DHDPS-like Dihydrodipi 69.6 76 0.0017 30.7 11.9 102 132-244 17-123 (281)
95 PRK07315 fructose-bisphosphate 68.6 56 0.0012 32.7 10.9 115 108-230 65-183 (293)
96 PLN02925 4-hydroxy-3-methylbut 68.6 56 0.0012 36.7 11.6 148 64-245 112-294 (733)
97 PRK13396 3-deoxy-7-phosphohept 68.2 88 0.0019 32.3 12.4 89 122-232 165-257 (352)
98 cd00452 KDPG_aldolase KDPG and 67.8 32 0.00068 31.7 8.4 106 63-220 17-124 (190)
99 TIGR00259 thylakoid_BtpA membr 67.7 24 0.00053 34.8 8.0 36 208-246 36-77 (257)
100 PRK08673 3-deoxy-7-phosphohept 67.2 76 0.0016 32.5 11.7 92 122-235 157-251 (335)
101 cd01493 APPBP1_RUB Ubiquitin a 67.1 40 0.00086 35.6 9.9 112 55-185 23-143 (425)
102 PRK08318 dihydropyrimidine deh 67.1 38 0.00083 35.1 9.8 107 122-247 168-304 (420)
103 cd04727 pdxS PdxS is a subunit 67.1 1.1E+02 0.0023 30.9 12.3 109 104-246 54-164 (283)
104 cd02812 PcrB_like PcrB_like pr 66.4 12 0.00025 36.1 5.3 60 136-219 15-76 (219)
105 cd04738 DHOD_2_like Dihydrooro 66.2 39 0.00084 34.0 9.4 101 107-221 189-310 (327)
106 PRK00009 phosphoenolpyruvate c 66.1 22 0.00047 41.1 8.3 78 105-184 499-604 (911)
107 PF04551 GcpE: GcpE protein; 65.5 18 0.00039 37.3 6.7 101 64-185 33-137 (359)
108 cd04740 DHOD_1B_like Dihydroor 65.5 1E+02 0.0022 30.2 11.9 53 175-245 227-279 (296)
109 TIGR01859 fruc_bis_ald_ fructo 65.2 90 0.002 31.0 11.6 115 123-241 75-197 (282)
110 cd04728 ThiG Thiazole synthase 65.1 1.5E+02 0.0032 29.3 12.6 104 122-243 123-227 (248)
111 cd02810 DHOD_DHPD_FMN Dihydroo 64.9 52 0.0011 32.0 9.8 87 122-220 162-272 (289)
112 PRK08883 ribulose-phosphate 3- 64.5 88 0.0019 29.9 11.0 106 116-240 102-215 (220)
113 cd03332 LMO_FMN L-Lactate 2-mo 64.2 42 0.00091 35.0 9.3 87 105-220 243-337 (383)
114 TIGR00262 trpA tryptophan synt 64.1 87 0.0019 30.6 11.1 152 64-241 26-195 (256)
115 cd04726 KGPDC_HPS 3-Keto-L-gul 63.9 1E+02 0.0022 28.0 11.0 87 106-219 43-132 (202)
116 PLN03013 cysteine synthase 63.8 1E+02 0.0022 32.6 12.2 123 171-316 190-318 (429)
117 PF00582 Usp: Universal stress 63.7 22 0.00048 28.7 6.0 42 269-311 89-139 (140)
118 PRK08745 ribulose-phosphate 3- 63.4 1.1E+02 0.0024 29.4 11.4 112 116-241 106-220 (223)
119 PRK00208 thiG thiazole synthas 63.3 1.6E+02 0.0035 29.1 12.6 103 122-242 123-226 (250)
120 cd05015 SIS_PGI_1 Phosphogluco 63.2 25 0.00055 31.5 6.7 52 282-333 73-137 (158)
121 KOG2178|consensus 63.0 7.2 0.00016 40.6 3.4 77 280-373 283-375 (409)
122 cd01561 CBS_like CBS_like: Thi 62.9 1.6E+02 0.0034 28.8 13.2 124 170-315 67-197 (291)
123 TIGR01768 GGGP-family geranylg 62.7 20 0.00043 34.7 6.1 62 133-219 15-77 (223)
124 PRK04885 ppnK inorganic polyph 62.4 9.1 0.0002 37.7 3.9 54 280-335 145-203 (265)
125 cd04739 DHOD_like Dihydroorota 62.3 1.1E+02 0.0025 30.7 11.9 155 54-223 15-198 (325)
126 cd06556 ICL_KPHMT Members of t 62.1 70 0.0015 31.1 9.9 56 275-331 162-217 (240)
127 PRK15452 putative protease; Pr 61.9 40 0.00087 35.7 8.8 84 123-221 4-97 (443)
128 cd01562 Thr-dehyd Threonine de 61.7 1.3E+02 0.0028 29.3 11.9 119 170-315 79-202 (304)
129 TIGR02356 adenyl_thiF thiazole 61.6 31 0.00068 32.2 7.2 118 49-185 19-142 (202)
130 cd01492 Aos1_SUMO Ubiquitin ac 61.5 41 0.00089 31.4 8.0 109 56-185 25-141 (197)
131 cd04501 SGNH_hydrolase_like_4 61.4 28 0.00061 30.8 6.7 55 131-185 44-102 (183)
132 cd02940 DHPD_FMN Dihydropyrimi 61.4 68 0.0015 31.7 10.0 86 122-221 168-282 (299)
133 PRK07259 dihydroorotate dehydr 61.3 62 0.0014 31.9 9.6 54 175-246 230-283 (301)
134 PRK07334 threonine dehydratase 61.2 83 0.0018 32.5 10.9 119 170-315 85-208 (403)
135 PRK12483 threonine dehydratase 61.0 1.5E+02 0.0032 32.2 13.1 120 170-316 99-224 (521)
136 COG0031 CysK Cysteine synthase 59.7 2E+02 0.0044 29.1 14.5 214 122-361 25-261 (300)
137 COG0061 nadF NAD kinase [Coenz 59.6 9.7 0.00021 37.6 3.6 36 279-314 162-201 (281)
138 cd00945 Aldolase_Class_I Class 59.4 1.2E+02 0.0025 26.9 10.4 90 122-221 48-150 (201)
139 PRK09722 allulose-6-phosphate 59.1 1.8E+02 0.0038 28.2 12.1 111 116-243 104-222 (229)
140 PRK06381 threonine synthase; V 59.0 1.7E+02 0.0036 29.1 12.3 121 170-315 77-209 (319)
141 cd02940 DHPD_FMN Dihydropyrimi 58.8 1.9E+02 0.0042 28.6 13.2 153 54-221 15-201 (299)
142 PTZ00398 phosphoenolpyruvate c 58.2 37 0.0008 39.6 8.3 80 104-185 557-662 (974)
143 PLN02979 glycolate oxidase 57.8 71 0.0015 33.2 9.5 90 105-221 213-308 (366)
144 PRK07259 dihydroorotate dehydr 57.7 2E+02 0.0043 28.3 15.6 146 54-222 15-191 (301)
145 TIGR02355 moeB molybdopterin s 57.7 35 0.00075 33.0 6.9 66 108-186 81-146 (240)
146 cd04739 DHOD_like Dihydroorota 57.4 1.3E+02 0.0028 30.3 11.3 106 122-247 163-288 (325)
147 KOG2550|consensus 56.8 60 0.0013 34.4 8.8 131 56-221 244-384 (503)
148 TIGR01137 cysta_beta cystathio 56.5 1.1E+02 0.0023 31.9 10.9 126 170-315 76-207 (454)
149 PRK05286 dihydroorotate dehydr 56.3 2.3E+02 0.005 28.7 13.9 102 178-292 136-248 (344)
150 TIGR01139 cysK cysteine syntha 56.2 1.5E+02 0.0032 29.1 11.3 123 170-315 71-200 (298)
151 PRK06552 keto-hydroxyglutarate 56.0 56 0.0012 31.2 7.9 72 131-219 48-135 (213)
152 PRK15005 universal stress prot 56.0 29 0.00063 29.4 5.6 40 271-311 96-143 (144)
153 PLN02970 serine racemase 55.8 2.1E+02 0.0047 28.6 12.6 119 170-315 89-212 (328)
154 PRK04169 geranylgeranylglycery 55.7 36 0.00078 33.0 6.7 56 139-219 26-82 (232)
155 cd00755 YgdL_like Family of ac 55.6 20 0.00043 34.6 4.9 85 108-209 68-153 (231)
156 TIGR01949 AroFGH_arch predicte 55.6 2E+02 0.0043 27.8 12.0 154 133-311 33-198 (258)
157 TIGR00853 pts-lac PTS system, 55.5 39 0.00085 28.0 6.0 60 108-184 21-80 (95)
158 PRK08638 threonine dehydratase 55.2 1.9E+02 0.004 29.3 12.0 119 170-315 89-212 (333)
159 PRK05286 dihydroorotate dehydr 54.8 60 0.0013 33.0 8.5 119 107-246 198-339 (344)
160 cd01485 E1-1_like Ubiquitin ac 54.8 61 0.0013 30.2 7.9 117 49-185 17-144 (198)
161 TIGR01182 eda Entner-Doudoroff 54.3 1.2E+02 0.0027 28.8 9.9 73 130-219 42-127 (204)
162 TIGR03586 PseI pseudaminic aci 54.1 1.1E+02 0.0024 31.2 10.2 88 106-220 78-168 (327)
163 cd08567 GDPD_SpGDE_like Glycer 54.1 64 0.0014 30.6 8.1 42 165-219 217-258 (263)
164 PRK05437 isopentenyl pyrophosp 54.0 85 0.0018 32.1 9.4 125 103-247 174-320 (352)
165 TIGR01136 cysKM cysteine synth 53.7 1.8E+02 0.0039 28.6 11.4 122 170-315 72-200 (299)
166 COG1440 CelA Phosphotransferas 53.5 56 0.0012 28.0 6.6 61 107-184 18-78 (102)
167 PRK09590 celB cellobiose phosp 53.3 68 0.0015 27.2 7.2 74 108-202 19-94 (104)
168 cd01487 E1_ThiF_like E1_ThiF_l 53.2 45 0.00097 30.5 6.6 66 108-186 55-121 (174)
169 PRK13111 trpA tryptophan synth 53.2 84 0.0018 30.8 8.9 104 64-184 28-147 (258)
170 cd05017 SIS_PGI_PMI_1 The memb 53.1 20 0.00044 30.2 4.1 52 282-335 43-99 (119)
171 PRK14077 pnk inorganic polypho 53.0 16 0.00036 36.4 4.0 34 280-313 174-211 (287)
172 PRK00561 ppnK inorganic polyph 52.6 17 0.00036 35.9 3.9 34 280-313 134-171 (259)
173 PRK09279 pyruvate phosphate di 52.3 46 0.001 38.4 7.8 88 122-220 738-856 (879)
174 PRK05718 keto-hydroxyglutarate 52.2 1.4E+02 0.003 28.5 10.0 91 116-232 36-139 (212)
175 cd07944 DRE_TIM_HOA_like 4-hyd 52.2 1.7E+02 0.0038 28.5 11.0 105 122-243 71-180 (266)
176 COG3010 NanE Putative N-acetyl 52.0 24 0.00051 34.1 4.6 108 133-296 53-160 (229)
177 cd00757 ThiF_MoeB_HesA_family 51.7 47 0.001 31.5 6.7 65 108-185 78-142 (228)
178 PRK03372 ppnK inorganic polyph 51.1 17 0.00037 36.7 3.7 35 280-314 182-220 (306)
179 PF05690 ThiG: Thiazole biosyn 51.1 51 0.0011 32.4 6.8 83 145-243 145-227 (247)
180 PRK08644 thiamine biosynthesis 50.9 50 0.0011 31.2 6.7 66 108-186 84-150 (212)
181 PRK05690 molybdopterin biosynt 50.8 45 0.00097 32.2 6.5 118 48-185 29-153 (245)
182 PRK01911 ppnK inorganic polyph 50.7 16 0.00035 36.5 3.6 34 280-313 173-210 (292)
183 PRK06815 hypothetical protein; 50.6 2.1E+02 0.0045 28.5 11.4 120 170-316 82-206 (317)
184 PLN02535 glycolate oxidase 49.9 2.1E+02 0.0045 29.7 11.5 94 105-223 213-310 (364)
185 PLN02565 cysteine synthase 49.9 1.6E+02 0.0034 29.7 10.5 122 171-315 82-209 (322)
186 TIGR01138 cysM cysteine syntha 49.7 2.7E+02 0.0058 27.4 15.7 122 170-315 73-200 (290)
187 PRK03501 ppnK inorganic polyph 49.7 21 0.00045 35.3 4.0 54 280-335 146-204 (264)
188 TIGR01127 ilvA_1Cterm threonin 49.1 2.5E+02 0.0053 28.6 11.9 120 170-316 62-186 (380)
189 PRK02649 ppnK inorganic polyph 49.1 21 0.00045 36.0 4.0 34 280-313 178-215 (305)
190 PRK03708 ppnK inorganic polyph 49.1 21 0.00046 35.3 4.0 35 280-314 162-200 (277)
191 PRK10717 cysteine synthase A; 49.0 1.9E+02 0.0042 28.8 11.0 130 170-315 78-213 (330)
192 PRK13125 trpA tryptophan synth 49.0 1.6E+02 0.0034 28.3 9.9 94 105-220 116-214 (244)
193 PRK01231 ppnK inorganic polyph 49.0 18 0.0004 36.1 3.6 36 280-315 172-211 (295)
194 PRK01185 ppnK inorganic polyph 48.9 19 0.00041 35.7 3.6 35 280-314 155-193 (271)
195 PLN02493 probable peroxisomal 48.8 1.3E+02 0.0028 31.2 9.8 90 105-221 214-309 (367)
196 PF03437 BtpA: BtpA family; I 48.5 54 0.0012 32.3 6.7 40 204-246 33-78 (254)
197 cd00954 NAL N-Acetylneuraminic 48.2 1.9E+02 0.0041 28.4 10.6 99 133-243 21-126 (288)
198 PRK02645 ppnK inorganic polyph 48.1 20 0.00043 36.0 3.7 50 280-335 176-229 (305)
199 PLN02935 Bifunctional NADH kin 48.0 20 0.00043 38.7 3.9 35 280-314 377-415 (508)
200 TIGR00259 thylakoid_BtpA membr 48.0 2.9E+02 0.0062 27.3 12.6 174 134-329 30-226 (257)
201 cd05565 PTS_IIB_lactose PTS_II 47.6 77 0.0017 26.7 6.6 63 107-186 17-79 (99)
202 PRK04761 ppnK inorganic polyph 47.6 22 0.00048 34.8 3.8 37 279-315 130-170 (246)
203 PRK15116 sulfur acceptor prote 47.5 28 0.00061 34.4 4.6 86 108-210 87-173 (268)
204 PRK02083 imidazole glycerol ph 47.5 1E+02 0.0023 29.5 8.5 186 145-360 44-249 (253)
205 cd02911 arch_FMN Archeal FMN-b 47.2 1.4E+02 0.0031 28.6 9.3 77 122-220 139-220 (233)
206 PRK09224 threonine dehydratase 47.2 2.8E+02 0.006 29.8 12.4 120 170-316 82-207 (504)
207 cd04730 NPD_like 2-Nitropropan 47.2 1.6E+02 0.0035 27.4 9.6 81 122-220 102-185 (236)
208 TIGR00674 dapA dihydrodipicoli 46.8 1.8E+02 0.0038 28.5 10.1 103 133-246 19-126 (285)
209 cd04732 HisA HisA. Phosphorib 46.5 2.5E+02 0.0054 26.2 11.0 45 175-231 186-230 (234)
210 PRK04539 ppnK inorganic polyph 46.2 25 0.00053 35.3 4.0 35 280-314 178-216 (296)
211 KOG3974|consensus 46.2 80 0.0017 31.6 7.4 56 125-184 81-137 (306)
212 PF01408 GFO_IDH_MocA: Oxidore 45.6 60 0.0013 26.7 5.7 57 135-211 51-110 (120)
213 PF04131 NanE: Putative N-acet 45.5 1.5E+02 0.0033 28.2 8.8 143 103-290 20-174 (192)
214 PRK07998 gatY putative fructos 45.5 1.7E+02 0.0038 29.2 9.8 65 166-245 61-126 (283)
215 PF01791 DeoC: DeoC/LacD famil 45.5 62 0.0013 30.7 6.5 98 135-244 79-189 (236)
216 cd04738 DHOD_2_like Dihydrooro 45.4 3.3E+02 0.0072 27.3 14.2 100 178-291 127-238 (327)
217 PF05991 NYN_YacP: YacP-like N 45.4 30 0.00065 31.6 4.1 50 283-333 66-121 (166)
218 PRK14075 pnk inorganic polypho 45.3 25 0.00055 34.3 3.9 35 280-314 143-181 (256)
219 cd04722 TIM_phosphate_binding 45.2 1.8E+02 0.0039 25.2 9.1 85 122-220 114-199 (200)
220 PRK02155 ppnK NAD(+)/NADH kina 45.1 24 0.00052 35.2 3.8 36 280-315 173-212 (291)
221 PLN02274 inosine-5'-monophosph 44.9 2.6E+02 0.0057 30.2 11.8 115 106-241 216-348 (505)
222 PRK11840 bifunctional sulfur c 44.8 1.5E+02 0.0033 30.3 9.4 95 129-241 205-299 (326)
223 cd01987 USP_OKCHK USP domain i 44.4 57 0.0012 26.8 5.4 42 270-311 73-123 (124)
224 cd05008 SIS_GlmS_GlmD_1 SIS (S 44.4 26 0.00057 29.3 3.4 34 282-316 46-84 (126)
225 cd08556 GDPD Glycerophosphodie 44.3 1.4E+02 0.003 26.4 8.2 40 167-219 148-187 (189)
226 PRK01130 N-acetylmannosamine-6 44.3 2.1E+02 0.0046 26.6 9.9 80 121-221 118-203 (221)
227 PRK13509 transcriptional repre 43.7 61 0.0013 31.4 6.2 63 267-333 80-142 (251)
228 KOG2618|consensus 43.7 24 0.00051 35.9 3.4 69 294-373 62-130 (366)
229 PRK02231 ppnK inorganic polyph 43.6 28 0.00062 34.5 3.9 34 281-314 154-191 (272)
230 PRK06382 threonine dehydratase 43.3 2.9E+02 0.0063 28.6 11.6 119 171-316 88-211 (406)
231 cd01822 Lysophospholipase_L1_l 43.0 98 0.0021 26.9 7.0 56 131-186 49-108 (177)
232 TIGR01275 ACC_deam_rel pyridox 43.0 3.4E+02 0.0073 26.7 15.0 123 170-313 72-204 (311)
233 PRK08649 inosine 5-monophospha 42.8 1.2E+02 0.0025 31.5 8.4 84 123-221 132-216 (368)
234 PF09547 Spore_IV_A: Stage IV 42.8 52 0.0011 35.2 5.8 64 157-236 158-221 (492)
235 TIGR01163 rpe ribulose-phospha 42.7 2.6E+02 0.0057 25.4 10.3 92 129-234 111-207 (210)
236 PRK11197 lldD L-lactate dehydr 42.7 1.6E+02 0.0035 30.7 9.5 89 105-221 235-330 (381)
237 TIGR00735 hisF imidazoleglycer 42.6 1.8E+02 0.004 27.9 9.4 187 145-360 44-251 (254)
238 PF01081 Aldolase: KDPG and KH 42.6 79 0.0017 29.9 6.6 72 131-219 43-127 (196)
239 PRK06801 hypothetical protein; 42.5 1.8E+02 0.0039 29.1 9.4 106 121-230 73-186 (286)
240 COG0826 Collagenase and relate 42.5 1.1E+02 0.0024 31.4 8.1 81 135-221 16-100 (347)
241 cd01828 sialate_O-acetylestera 42.3 80 0.0017 27.5 6.3 54 133-186 36-94 (169)
242 cd02803 OYE_like_FMN_family Ol 42.3 1.8E+02 0.0039 28.8 9.5 98 106-220 197-311 (327)
243 cd00952 CHBPH_aldolase Trans-o 42.2 2.7E+02 0.0059 27.7 10.8 101 133-244 29-134 (309)
244 TIGR01769 GGGP geranylgeranylg 42.1 65 0.0014 30.7 6.0 55 140-219 19-75 (205)
245 PRK13813 orotidine 5'-phosphat 41.8 66 0.0014 29.9 6.0 38 205-242 177-214 (215)
246 PRK10411 DNA-binding transcrip 41.7 71 0.0015 30.8 6.3 65 266-334 79-143 (240)
247 PRK15447 putative protease; Pr 41.6 1.3E+02 0.0028 30.0 8.3 67 145-220 29-95 (301)
248 PRK08328 hypothetical protein; 41.2 92 0.002 29.7 7.0 59 116-185 91-149 (231)
249 PF01113 DapB_N: Dihydrodipico 41.2 32 0.0007 29.5 3.5 40 136-186 59-98 (124)
250 cd02809 alpha_hydroxyacid_oxid 41.1 2E+02 0.0044 28.4 9.6 93 104-221 161-257 (299)
251 CHL00162 thiG thiamin biosynth 40.6 56 0.0012 32.5 5.3 35 204-238 202-236 (267)
252 PRK07695 transcriptional regul 40.4 3E+02 0.0064 25.3 10.8 112 107-241 86-198 (201)
253 COG2099 CobK Precorrin-6x redu 40.1 40 0.00086 33.4 4.3 101 98-210 108-248 (257)
254 PRK14852 hypothetical protein; 40.1 78 0.0017 37.0 7.2 69 108-187 389-457 (989)
255 PF07905 PucR: Purine cataboli 40.0 1.4E+02 0.003 25.5 7.3 83 106-212 32-120 (123)
256 PRK07084 fructose-bisphosphate 39.4 2.6E+02 0.0056 28.6 10.1 114 108-230 73-194 (321)
257 PRK07998 gatY putative fructos 39.3 1.6E+02 0.0034 29.5 8.5 104 121-229 73-182 (283)
258 PRK15452 putative protease; Pr 39.2 2.5E+02 0.0055 29.8 10.4 120 205-335 15-143 (443)
259 PRK15456 universal stress prot 39.0 70 0.0015 27.2 5.3 38 273-311 96-141 (142)
260 PRK03378 ppnK inorganic polyph 38.9 36 0.00077 34.0 3.9 33 281-313 174-210 (292)
261 TIGR00737 nifR3_yhdG putative 38.8 2.1E+02 0.0045 28.5 9.3 34 175-220 188-222 (319)
262 PRK08762 molybdopterin biosynt 38.7 92 0.002 31.9 6.9 65 108-185 192-256 (376)
263 PF03102 NeuB: NeuB family; I 38.5 2E+02 0.0044 28.0 8.9 99 105-231 56-155 (241)
264 PRK07476 eutB threonine dehydr 38.5 4.1E+02 0.0089 26.4 12.3 119 170-315 81-204 (322)
265 PRK07114 keto-hydroxyglutarate 38.4 1.4E+02 0.0031 28.8 7.7 73 130-219 49-138 (222)
266 PF01959 DHQS: 3-dehydroquinat 38.2 1.3E+02 0.0028 31.2 7.8 176 117-317 69-274 (354)
267 COG0710 AroD 3-dehydroquinate 38.1 1.9E+02 0.0041 28.2 8.5 114 106-240 106-228 (231)
268 cd07939 DRE_TIM_NifV Streptomy 38.0 2.2E+02 0.0047 27.5 9.1 75 161-242 105-180 (259)
269 PRK08639 threonine dehydratase 37.9 3.5E+02 0.0076 28.2 11.2 120 170-315 87-216 (420)
270 PRK06835 DNA replication prote 37.6 1E+02 0.0022 31.4 6.9 75 142-223 244-318 (329)
271 TIGR03844 cysteate_syn cysteat 37.5 3E+02 0.0065 28.7 10.5 86 266-360 100-189 (398)
272 TIGR01274 ACC_deam 1-aminocycl 37.4 4.4E+02 0.0095 26.4 16.1 135 170-315 82-225 (337)
273 TIGR01304 IMP_DH_rel_2 IMP deh 37.3 2.1E+02 0.0046 29.7 9.3 39 170-222 179-217 (369)
274 PRK10100 DNA-binding transcrip 37.3 74 0.0016 30.0 5.6 52 283-334 53-111 (216)
275 TIGR02991 ectoine_eutB ectoine 37.2 4E+02 0.0087 26.6 11.1 118 170-314 81-203 (317)
276 PRK05597 molybdopterin biosynt 37.1 1.4E+02 0.0029 30.6 7.8 65 108-185 85-149 (355)
277 cd02810 DHOD_DHPD_FMN Dihydroo 37.0 4E+02 0.0086 25.8 13.3 22 54-75 12-33 (289)
278 COG1445 FrwB Phosphotransferas 37.0 22 0.00048 31.3 1.8 43 116-159 24-70 (122)
279 TIGR03151 enACPred_II putative 37.0 2.9E+02 0.0063 27.7 10.0 81 122-220 109-190 (307)
280 PRK11613 folP dihydropteroate 36.6 1.6E+02 0.0035 29.4 8.0 92 207-312 45-140 (282)
281 PRK05638 threonine synthase; V 36.4 2.6E+02 0.0057 29.3 10.1 117 170-313 126-252 (442)
282 TIGR03528 2_3_DAP_am_ly diamin 36.4 4.2E+02 0.0092 27.5 11.4 121 170-314 127-263 (396)
283 PRK00125 pyrF orotidine 5'-pho 36.0 4.5E+02 0.0098 26.2 11.8 124 167-308 74-215 (278)
284 PLN00011 cysteine synthase 36.0 4.6E+02 0.0099 26.2 12.0 122 171-315 84-211 (323)
285 PF03796 DnaB_C: DnaB-like hel 36.0 40 0.00086 32.3 3.6 73 146-219 132-211 (259)
286 COG2870 RfaE ADP-heptose synth 35.9 58 0.0013 34.5 4.9 44 134-184 133-176 (467)
287 PRK03170 dihydrodipicolinate s 35.8 4.3E+02 0.0092 25.8 10.9 103 132-245 21-128 (292)
288 PF04312 DUF460: Protein of un 35.8 29 0.00063 31.2 2.4 19 169-187 66-84 (138)
289 TIGR00196 yjeF_cterm yjeF C-te 35.7 51 0.0011 31.9 4.3 44 133-184 81-124 (272)
290 PRK08526 threonine dehydratase 35.7 4.4E+02 0.0095 27.5 11.4 120 170-316 82-206 (403)
291 PLN02550 threonine dehydratase 35.7 3.2E+02 0.007 30.3 10.8 120 170-316 171-296 (591)
292 PRK12475 thiamine/molybdopteri 35.5 1.1E+02 0.0023 31.2 6.7 65 108-185 83-147 (338)
293 PRK00043 thiE thiamine-phospha 35.5 1.9E+02 0.0042 26.3 8.0 39 204-242 172-210 (212)
294 COG2145 ThiM Hydroxyethylthiaz 35.3 70 0.0015 31.8 5.1 46 134-184 45-90 (265)
295 PF14010 PEPcase_2: Phosphoeno 35.3 38 0.00082 36.5 3.5 74 108-183 156-244 (491)
296 TIGR03569 NeuB_NnaB N-acetylne 35.3 3.9E+02 0.0085 27.3 10.7 83 106-215 77-161 (329)
297 PRK08206 diaminopropionate amm 35.1 2.9E+02 0.0063 28.7 10.0 126 170-315 130-266 (399)
298 TIGR00736 nifR3_rel_arch TIM-b 35.0 2.6E+02 0.0056 27.1 9.0 80 122-220 134-220 (231)
299 cd05013 SIS_RpiR RpiR-like pro 34.6 45 0.00098 27.6 3.3 34 282-316 60-98 (139)
300 cd05014 SIS_Kpsf KpsF-like pro 34.5 48 0.001 27.7 3.5 33 282-315 47-84 (128)
301 cd08579 GDPD_memb_like Glycero 34.2 1.3E+02 0.0029 27.9 6.7 42 165-219 176-217 (220)
302 PF01070 FMN_dh: FMN-dependent 34.1 2.8E+02 0.006 28.5 9.5 96 98-220 209-309 (356)
303 PLN02929 NADH kinase 34.1 43 0.00093 33.8 3.6 35 279-313 192-233 (301)
304 PF02662 FlpD: Methyl-viologen 34.0 1.3E+02 0.0027 26.2 6.1 31 193-223 32-62 (124)
305 PF13407 Peripla_BP_4: Peripla 34.0 65 0.0014 29.8 4.6 72 102-185 12-86 (257)
306 PRK15118 universal stress glob 33.9 1.1E+02 0.0024 25.9 5.8 40 272-312 93-138 (144)
307 PRK11761 cysM cysteine synthas 33.9 4.7E+02 0.01 25.8 11.6 122 170-315 77-204 (296)
308 PRK08674 bifunctional phosphog 33.9 1E+02 0.0022 31.0 6.3 50 282-333 78-132 (337)
309 PF00682 HMGL-like: HMGL-like 33.8 1.7E+02 0.0038 27.4 7.6 74 162-242 104-178 (237)
310 PRK13143 hisH imidazole glycer 33.6 1.4E+02 0.0031 27.6 6.8 69 106-190 12-85 (200)
311 PRK07591 threonine synthase; V 33.5 5.6E+02 0.012 26.7 11.9 120 170-315 151-284 (421)
312 PRK08185 hypothetical protein; 33.5 3.1E+02 0.0066 27.5 9.5 105 121-230 67-179 (283)
313 cd00429 RPE Ribulose-5-phospha 33.3 2.5E+02 0.0053 25.5 8.3 100 123-236 106-210 (211)
314 PRK00278 trpC indole-3-glycero 33.3 3.8E+02 0.0083 26.1 10.0 130 51-222 49-189 (260)
315 cd03309 CmuC_like CmuC_like. P 33.3 1.4E+02 0.0029 30.3 7.0 60 134-194 157-232 (321)
316 PRK01033 imidazole glycerol ph 33.1 2.9E+02 0.0064 26.7 9.1 62 145-223 44-106 (258)
317 TIGR03127 RuMP_HxlB 6-phospho 33.1 46 0.001 29.9 3.3 33 282-315 72-109 (179)
318 KOG2335|consensus 33.0 54 0.0012 33.9 4.1 30 123-155 204-237 (358)
319 PRK07688 thiamine/molybdopteri 33.0 1.2E+02 0.0026 30.9 6.6 59 116-185 89-147 (339)
320 PLN02727 NAD kinase 32.8 43 0.00093 38.8 3.6 34 280-313 860-897 (986)
321 PLN02826 dihydroorotate dehydr 32.7 2.8E+02 0.0062 29.1 9.5 107 121-245 261-390 (409)
322 PRK08197 threonine synthase; V 32.6 3.4E+02 0.0073 28.0 10.0 34 268-302 112-145 (394)
323 TIGR02151 IPP_isom_2 isopenten 32.4 2.6E+02 0.0057 28.2 9.0 98 103-220 167-283 (333)
324 PLN02334 ribulose-phosphate 3- 32.4 4.3E+02 0.0094 24.9 10.2 116 108-243 106-225 (229)
325 COG0800 Eda 2-keto-3-deoxy-6-p 32.3 1.2E+02 0.0027 29.1 6.1 75 128-219 45-132 (211)
326 PRK10528 multifunctional acyl- 32.1 1.7E+02 0.0037 26.6 6.9 53 132-184 57-113 (191)
327 TIGR00676 fadh2 5,10-methylene 32.0 1.8E+02 0.0039 28.5 7.5 89 138-240 21-120 (272)
328 PF10087 DUF2325: Uncharacteri 31.9 1.7E+02 0.0037 23.8 6.3 67 107-185 12-81 (97)
329 cd05564 PTS_IIB_chitobiose_lic 31.8 1.4E+02 0.003 24.5 5.8 61 107-184 16-76 (96)
330 PF00455 DeoRC: DeoR C termina 31.8 1.3E+02 0.0027 27.1 6.0 64 267-334 6-70 (161)
331 PRK07048 serine/threonine dehy 31.8 5.2E+02 0.011 25.6 10.9 119 170-315 86-209 (321)
332 PRK14076 pnk inorganic polypho 31.7 52 0.0011 35.9 4.0 34 280-313 458-495 (569)
333 TIGR00441 gmhA phosphoheptose 31.7 53 0.0011 29.2 3.4 33 282-315 79-116 (154)
334 TIGR01496 DHPS dihydropteroate 31.7 3.7E+02 0.0081 26.2 9.6 93 207-314 30-127 (257)
335 cd01483 E1_enzyme_family Super 31.7 2.3E+02 0.0049 24.4 7.4 65 108-185 56-120 (143)
336 TIGR00736 nifR3_rel_arch TIM-b 31.2 4.9E+02 0.011 25.2 10.6 107 162-290 51-169 (231)
337 TIGR03128 RuMP_HxlA 3-hexulose 31.1 1.2E+02 0.0026 27.9 5.8 73 128-220 60-133 (206)
338 COG0826 Collagenase and relate 31.0 3.6E+02 0.0078 27.7 9.7 101 202-312 15-120 (347)
339 PRK04147 N-acetylneuraminate l 30.9 5.2E+02 0.011 25.3 11.5 103 132-245 23-131 (293)
340 TIGR00612 ispG_gcpE 1-hydroxy- 30.9 1.6E+02 0.0035 30.4 7.0 143 64-242 36-190 (346)
341 cd05005 SIS_PHI Hexulose-6-pho 30.7 55 0.0012 29.6 3.4 33 282-315 75-112 (179)
342 cd00950 DHDPS Dihydrodipicolin 30.7 5E+02 0.011 25.1 10.4 99 138-246 27-128 (284)
343 PRK10550 tRNA-dihydrouridine s 30.6 48 0.001 33.4 3.3 31 122-155 194-228 (312)
344 COG1465 Predicted alternative 30.3 2.5E+02 0.0055 28.7 8.1 112 106-245 83-194 (376)
345 TIGR01949 AroFGH_arch predicte 30.2 2.4E+02 0.0053 27.2 8.0 95 121-220 69-176 (258)
346 TIGR02090 LEU1_arch isopropylm 29.7 6.2E+02 0.014 25.9 11.7 123 108-242 52-182 (363)
347 cd04733 OYE_like_2_FMN Old yel 29.7 4.3E+02 0.0092 26.6 10.0 98 106-220 205-322 (338)
348 PRK07878 molybdopterin biosynt 29.6 2.1E+02 0.0046 29.6 7.9 65 108-185 99-163 (392)
349 CHL00200 trpA tryptophan synth 29.5 5.5E+02 0.012 25.2 10.7 99 106-220 132-231 (263)
350 PRK09140 2-dehydro-3-deoxy-6-p 29.5 4.2E+02 0.009 25.0 9.3 108 165-311 46-157 (206)
351 cd04742 NPD_FabD 2-Nitropropan 29.3 3.6E+02 0.0077 28.6 9.5 63 145-220 178-248 (418)
352 PF01513 NAD_kinase: ATP-NAD k 29.2 38 0.00083 33.3 2.3 34 280-313 188-225 (285)
353 PRK03910 D-cysteine desulfhydr 29.2 5.9E+02 0.013 25.4 16.2 129 170-315 80-220 (331)
354 PF02110 HK: Hydroxyethylthiaz 29.2 1.1E+02 0.0025 29.9 5.5 46 134-184 39-84 (246)
355 TIGR00035 asp_race aspartate r 29.2 3.3E+02 0.0072 25.7 8.6 86 226-313 9-106 (229)
356 cd05710 SIS_1 A subgroup of th 29.1 56 0.0012 27.7 3.0 34 282-316 47-85 (120)
357 cd06294 PBP1_ycjW_transcriptio 29.0 2E+02 0.0042 26.5 6.9 72 100-185 16-89 (270)
358 PRK12756 phospho-2-dehydro-3-d 29.0 4.3E+02 0.0092 27.4 9.7 161 107-310 39-232 (348)
359 COG2352 Ppc Phosphoenolpyruvat 28.9 1.6E+02 0.0034 34.0 7.0 78 104-183 497-600 (910)
360 cd06313 PBP1_ABC_sugar_binding 28.8 1.2E+02 0.0025 28.6 5.5 76 99-186 10-87 (272)
361 PTZ00170 D-ribulose-5-phosphat 28.7 3.6E+02 0.0078 25.7 8.8 107 116-242 110-223 (228)
362 PRK08223 hypothetical protein; 28.7 1.8E+02 0.0038 29.3 6.9 67 108-185 84-150 (287)
363 PRK07877 hypothetical protein; 28.5 1.4E+02 0.0031 33.8 6.8 67 107-186 162-228 (722)
364 TIGR02311 HpaI 2,4-dihydroxyhe 28.5 2.6E+02 0.0055 27.2 7.8 86 110-220 3-91 (249)
365 PRK06260 threonine synthase; V 28.3 4.8E+02 0.01 26.9 10.2 39 274-313 106-146 (397)
366 PF07722 Peptidase_C26: Peptid 28.2 67 0.0015 30.4 3.7 68 116-186 33-113 (217)
367 cd04740 DHOD_1B_like Dihydroor 28.2 5.7E+02 0.012 24.9 10.7 149 54-222 13-188 (296)
368 cd01750 GATase1_CobQ Type 1 gl 28.2 1.6E+02 0.0034 27.3 6.0 63 106-184 11-77 (194)
369 cd01989 STK_N The N-terminal d 28.2 1.7E+02 0.0036 24.8 5.9 44 270-313 91-145 (146)
370 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.1 2.3E+02 0.0049 27.8 7.5 71 168-243 120-191 (275)
371 TIGR00260 thrC threonine synth 27.7 4.4E+02 0.0094 26.1 9.6 62 271-333 59-125 (328)
372 PRK10681 DNA-binding transcrip 27.3 1.1E+02 0.0023 29.7 4.9 64 267-334 79-143 (252)
373 PF07075 DUF1343: Protein of u 27.2 1.6E+02 0.0034 30.7 6.3 79 138-236 72-152 (365)
374 PF08541 ACP_syn_III_C: 3-Oxoa 27.1 80 0.0017 25.0 3.4 25 348-372 53-77 (90)
375 PRK05581 ribulose-phosphate 3- 27.0 4.9E+02 0.011 23.8 11.3 103 124-239 111-217 (220)
376 PF04009 DUF356: Protein of un 27.0 64 0.0014 27.9 2.9 51 281-331 55-106 (107)
377 PLN02556 cysteine synthase/L-3 26.9 5.7E+02 0.012 26.3 10.4 122 171-315 126-253 (368)
378 PF00072 Response_reg: Respons 26.9 3.1E+02 0.0067 21.4 7.0 62 274-335 35-102 (112)
379 cd01830 XynE_like SGNH_hydrola 26.8 1.1E+02 0.0023 27.9 4.7 55 132-186 59-126 (204)
380 PRK05600 thiamine biosynthesis 26.7 1.8E+02 0.0039 30.0 6.8 65 108-185 98-162 (370)
381 COG0794 GutQ Predicted sugar p 26.7 40 0.00086 32.2 1.8 69 146-230 80-151 (202)
382 cd06319 PBP1_ABC_sugar_binding 26.6 2.6E+02 0.0056 25.9 7.3 72 102-185 13-86 (277)
383 cd02808 GltS_FMN Glutamate syn 26.6 7.4E+02 0.016 25.7 13.3 94 106-220 204-314 (392)
384 cd00954 NAL N-Acetylneuraminic 26.5 2.2E+02 0.0049 27.9 7.2 62 119-184 67-133 (288)
385 PRK03620 5-dehydro-4-deoxygluc 26.5 6.4E+02 0.014 24.9 11.8 95 139-245 35-133 (303)
386 PRK08198 threonine dehydratase 26.2 7.2E+02 0.016 25.5 13.1 120 170-316 84-208 (404)
387 smart00870 Asparaginase Aspara 26.2 77 0.0017 32.0 3.9 50 138-193 228-278 (323)
388 cd06297 PBP1_LacI_like_12 Liga 26.1 2.6E+02 0.0056 26.1 7.3 70 102-185 13-84 (269)
389 PRK14851 hypothetical protein; 25.9 1.8E+02 0.004 32.6 7.1 62 116-186 106-167 (679)
390 TIGR00126 deoC deoxyribose-pho 25.8 2.6E+02 0.0055 26.7 7.1 102 198-310 68-180 (211)
391 PF03932 CutC: CutC family; I 25.7 2.8E+02 0.0061 26.3 7.3 94 177-294 48-150 (201)
392 KOG2683|consensus 25.4 1.8E+02 0.0038 28.9 5.9 55 131-202 233-287 (305)
393 PF01380 SIS: SIS domain SIS d 25.4 64 0.0014 26.7 2.7 34 282-315 53-90 (131)
394 TIGR00007 phosphoribosylformim 25.3 3.5E+02 0.0075 25.2 8.0 76 145-243 42-118 (230)
395 cd08564 GDPD_GsGDE_like Glycer 25.3 6.1E+02 0.013 24.3 10.8 53 167-235 211-263 (265)
396 PF03060 NMO: Nitronate monoox 25.2 2.7E+02 0.0058 28.1 7.6 81 122-220 136-219 (330)
397 PRK09389 (R)-citramalate synth 25.0 8.8E+02 0.019 26.0 12.5 122 108-241 54-183 (488)
398 cd00984 DnaB_C DnaB helicase C 25.0 1.4E+02 0.003 27.9 5.1 72 145-219 124-204 (242)
399 TIGR02127 pyrF_sub2 orotidine 24.8 3.5E+02 0.0077 26.6 8.1 128 163-308 70-213 (261)
400 cd01540 PBP1_arabinose_binding 24.8 1.7E+02 0.0037 27.4 5.8 73 100-185 11-85 (289)
401 PRK08227 autoinducer 2 aldolas 24.8 1.9E+02 0.0041 28.7 6.2 66 166-242 182-248 (264)
402 cd06271 PBP1_AglR_RafR_like Li 24.8 2.3E+02 0.0049 26.0 6.5 72 100-185 15-88 (268)
403 PRK04147 N-acetylneuraminate l 24.8 2.7E+02 0.0058 27.4 7.3 63 118-184 69-135 (293)
404 TIGR00665 DnaB replicative DNA 24.4 1.2E+02 0.0025 31.5 5.0 74 145-219 306-386 (434)
405 PLN02746 hydroxymethylglutaryl 24.2 3.7E+02 0.008 27.7 8.4 78 159-241 155-237 (347)
406 PRK08116 hypothetical protein; 24.1 3.3E+02 0.0071 26.6 7.8 45 142-188 176-220 (268)
407 PRK09461 ansA cytoplasmic aspa 24.1 93 0.002 31.7 4.0 50 138-191 226-276 (335)
408 PF01729 QRPTase_C: Quinolinat 24.0 5.6E+02 0.012 23.5 9.2 76 122-222 80-157 (169)
409 PRK00043 thiE thiamine-phospha 24.0 4.2E+02 0.009 24.0 8.1 67 134-222 23-90 (212)
410 cd06448 L-Ser-dehyd Serine deh 24.0 7.3E+02 0.016 24.7 10.5 121 170-315 65-194 (316)
411 PRK13936 phosphoheptose isomer 23.9 88 0.0019 29.1 3.5 33 282-315 111-148 (197)
412 cd07941 DRE_TIM_LeuA3 Desulfob 23.9 4.5E+02 0.0097 25.7 8.7 77 160-241 113-191 (273)
413 cd04729 NanE N-acetylmannosami 23.9 5.9E+02 0.013 23.6 9.4 80 122-220 123-206 (219)
414 PRK13938 phosphoheptose isomer 23.8 84 0.0018 29.5 3.4 32 284-316 115-151 (196)
415 PRK09802 DNA-binding transcrip 23.7 1.4E+02 0.0031 29.2 5.1 64 266-333 92-156 (269)
416 PRK06806 fructose-bisphosphate 23.4 5.4E+02 0.012 25.6 9.2 103 121-229 73-182 (281)
417 PRK09355 hydroxyethylthiazole 23.4 1.6E+02 0.0034 28.6 5.3 44 136-184 46-89 (263)
418 PRK10886 DnaA initiator-associ 23.4 6.2E+02 0.013 23.7 11.3 97 268-376 25-148 (196)
419 cd01748 GATase1_IGP_Synthase T 23.2 2.6E+02 0.0057 25.6 6.6 65 106-186 10-78 (198)
420 TIGR00520 asnASE_II L-asparagi 23.2 87 0.0019 32.2 3.6 48 138-192 255-304 (349)
421 TIGR00679 hpr-ser Hpr(Ser) kin 23.2 86 0.0019 31.8 3.5 78 133-227 70-159 (304)
422 cd06305 PBP1_methylthioribose_ 23.2 3.2E+02 0.007 25.1 7.3 67 107-185 18-86 (273)
423 PRK05638 threonine synthase; V 23.2 6.1E+02 0.013 26.6 10.0 47 266-313 95-143 (442)
424 PRK12281 rplX 50S ribosomal pr 23.0 57 0.0012 26.3 1.8 16 361-376 7-22 (76)
425 PF00205 TPP_enzyme_M: Thiamin 22.9 1E+02 0.0022 26.3 3.6 55 166-221 26-85 (137)
426 PF01207 Dus: Dihydrouridine s 22.9 58 0.0013 32.5 2.3 30 123-155 184-217 (309)
427 PRK12858 tagatose 1,6-diphosph 22.9 3.8E+02 0.0082 27.5 8.1 136 132-288 45-205 (340)
428 cd07940 DRE_TIM_IPMS 2-isoprop 22.7 5.8E+02 0.012 24.7 9.2 75 161-242 109-184 (268)
429 PRK08760 replicative DNA helic 22.7 1.2E+02 0.0027 32.3 4.8 74 145-219 340-420 (476)
430 cd00564 TMP_TenI Thiamine mono 22.6 5.3E+02 0.011 22.6 8.3 46 178-236 149-194 (196)
431 cd08561 GDPD_cytoplasmic_ScUgp 22.6 1.5E+02 0.0033 28.1 5.0 49 167-235 200-248 (249)
432 PF00701 DHDPS: Dihydrodipicol 22.5 5.5E+02 0.012 25.0 9.0 100 136-244 26-127 (289)
433 cd06259 YdcF-like YdcF-like. Y 22.5 3.8E+02 0.0083 23.0 7.2 51 315-374 53-106 (150)
434 PF11017 DUF2855: Protein of u 22.4 1.3E+02 0.0027 30.7 4.5 49 280-328 133-187 (314)
435 cd08563 GDPD_TtGDE_like Glycer 22.4 3.7E+02 0.0081 25.0 7.6 40 167-219 188-227 (230)
436 PF13606 Ank_3: Ankyrin repeat 22.4 74 0.0016 20.5 2.0 16 63-78 13-28 (30)
437 cd00578 L-fuc_L-ara-isomerases 22.4 3.6E+02 0.0077 28.3 8.1 84 225-315 13-98 (452)
438 PRK06721 threonine synthase; R 22.4 6.2E+02 0.014 25.6 9.7 21 351-373 166-186 (352)
439 TIGR00263 trpB tryptophan synt 22.3 7.3E+02 0.016 25.6 10.2 130 170-315 113-254 (385)
440 COG0159 TrpA Tryptophan syntha 22.2 2.5E+02 0.0055 27.9 6.5 106 64-184 33-152 (265)
441 cd06318 PBP1_ABC_sugar_binding 22.2 3.5E+02 0.0075 25.1 7.3 68 106-185 17-86 (282)
442 PF03575 Peptidase_S51: Peptid 22.1 1E+02 0.0022 27.2 3.5 68 107-184 2-74 (154)
443 PRK07411 hypothetical protein; 22.1 3.2E+02 0.007 28.3 7.6 118 48-185 35-159 (390)
444 PRK02290 3-dehydroquinate synt 22.0 3E+02 0.0065 28.5 7.1 176 116-318 60-265 (344)
445 PRK11557 putative DNA-binding 22.0 96 0.0021 29.9 3.5 33 282-315 175-212 (278)
446 TIGR02660 nifV_homocitr homoci 21.9 4E+02 0.0086 27.2 8.2 110 199-314 71-194 (365)
447 cd06300 PBP1_ABC_sugar_binding 21.9 2.6E+02 0.0056 25.9 6.4 69 106-186 17-92 (272)
448 smart00739 KOW KOW (Kyprides, 21.9 90 0.0019 19.1 2.2 16 361-376 2-17 (28)
449 TIGR00045 glycerate kinase. Th 21.8 1.3E+02 0.0029 31.3 4.6 58 124-184 263-320 (375)
450 cd03129 GAT1_Peptidase_E_like 21.8 92 0.002 28.9 3.2 73 106-184 45-119 (210)
451 PRK10558 alpha-dehydro-beta-de 21.6 1.1E+02 0.0024 30.0 3.8 88 109-220 9-98 (256)
452 PRK00366 ispG 4-hydroxy-3-meth 21.6 4.7E+02 0.01 27.3 8.4 143 64-241 44-198 (360)
453 PF13580 SIS_2: SIS domain; PD 21.5 87 0.0019 27.2 2.8 30 282-312 103-137 (138)
454 PRK06381 threonine synthase; V 21.4 5.1E+02 0.011 25.6 8.7 67 266-333 46-116 (319)
455 TIGR00167 cbbA ketose-bisphosp 21.4 6.6E+02 0.014 25.1 9.4 104 120-229 75-187 (288)
456 TIGR01036 pyrD_sub2 dihydrooro 21.4 8.6E+02 0.019 24.6 10.5 105 107-223 121-247 (335)
457 COG0794 GutQ Predicted sugar p 21.4 1.2E+02 0.0026 29.0 3.9 39 283-321 87-131 (202)
458 PF01274 Malate_synthase: Mala 21.4 2.5E+02 0.0055 30.7 6.8 96 116-220 232-364 (526)
459 PRK11366 puuD gamma-glutamyl-g 21.3 2.4E+02 0.0052 27.3 6.2 50 136-185 53-113 (254)
460 PF01791 DeoC: DeoC/LacD famil 21.3 88 0.0019 29.7 3.1 91 196-293 67-168 (236)
461 COG0167 PyrD Dihydroorotate de 21.2 1.9E+02 0.0042 29.3 5.6 51 167-227 148-200 (310)
462 cd01988 Na_H_Antiporter_C The 21.1 2.6E+02 0.0056 22.7 5.6 41 270-311 82-131 (132)
463 TIGR02634 xylF D-xylose ABC tr 21.1 3.2E+02 0.0068 26.4 7.0 68 106-185 16-85 (302)
464 cd01170 THZ_kinase 4-methyl-5- 21.1 1.9E+02 0.004 27.8 5.3 51 134-189 39-89 (242)
465 COG1570 XseA Exonuclease VII, 21.0 2.4E+02 0.0053 30.1 6.4 74 106-185 148-231 (440)
466 PRK13307 bifunctional formalde 21.0 8.1E+02 0.018 25.7 10.3 103 116-240 272-378 (391)
467 PLN02569 threonine synthase 21.0 8.2E+02 0.018 26.3 10.5 24 348-372 275-298 (484)
468 PRK11096 ansB L-asparaginase I 21.0 1E+02 0.0022 31.7 3.6 51 137-193 248-299 (347)
469 cd02801 DUS_like_FMN Dihydrour 21.0 6.6E+02 0.014 23.1 8.9 32 177-220 181-213 (231)
470 cd04734 OYE_like_3_FMN Old yel 20.9 6.2E+02 0.013 25.6 9.3 98 106-220 197-315 (343)
471 COG2022 ThiG Uncharacterized e 20.9 2.6E+02 0.0056 27.7 6.1 79 145-239 152-230 (262)
472 COG2071 Predicted glutamine am 20.8 2.1E+02 0.0045 28.2 5.5 66 122-192 40-123 (243)
473 cd00411 Asparaginase Asparagin 20.8 1.1E+02 0.0024 30.9 3.8 50 138-193 226-276 (323)
474 COG1844 Uncharacterized protei 20.7 61 0.0013 28.5 1.6 69 265-333 39-109 (125)
475 PF00834 Ribul_P_3_epim: Ribul 20.6 3E+02 0.0066 25.9 6.5 95 106-220 93-194 (201)
476 cd06283 PBP1_RegR_EndR_KdgR_li 20.6 2.5E+02 0.0055 25.6 6.0 66 106-185 17-84 (267)
477 cd00452 KDPG_aldolase KDPG and 20.5 5.1E+02 0.011 23.6 7.9 36 277-312 112-150 (190)
478 cd02933 OYE_like_FMN Old yello 20.5 5.3E+02 0.011 26.1 8.6 58 145-220 255-314 (338)
479 COG1105 FruK Fructose-1-phosph 20.5 5.8E+02 0.013 26.0 8.8 39 143-186 128-166 (310)
480 PRK04311 selenocysteine syntha 20.4 1.4E+02 0.0029 31.9 4.5 52 169-226 240-296 (464)
481 PRK10434 srlR DNA-bindng trans 20.4 1.6E+02 0.0036 28.5 4.8 53 267-323 78-131 (256)
482 COG1879 RbsB ABC-type sugar tr 20.4 1.1E+02 0.0024 29.8 3.7 42 133-184 79-121 (322)
483 cd00377 ICL_PEPM Members of th 20.3 7.7E+02 0.017 23.7 11.1 44 266-312 159-203 (243)
484 TIGR02128 G6PI_arch bifunction 20.3 1.5E+02 0.0032 29.8 4.6 13 285-297 69-81 (308)
485 PRK08246 threonine dehydratase 20.2 8.5E+02 0.018 24.1 12.5 120 169-315 81-202 (310)
486 COG1929 Glycerate kinase [Carb 20.2 1E+02 0.0022 32.1 3.3 59 123-184 263-321 (378)
487 PRK11858 aksA trans-homoaconit 20.1 6.6E+02 0.014 25.9 9.4 76 161-243 111-187 (378)
488 cd00293 USP_Like Usp: Universa 20.1 2E+02 0.0044 22.7 4.6 40 271-311 82-130 (130)
489 PLN02417 dihydrodipicolinate s 20.1 3.2E+02 0.0069 26.7 6.8 76 209-292 31-106 (280)
490 PRK14024 phosphoribosyl isomer 20.0 7.7E+02 0.017 23.5 10.2 47 175-233 186-235 (241)
No 1
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=2.1e-100 Score=792.64 Aligned_cols=351 Identities=46% Similarity=0.685 Sum_probs=310.5
Q ss_pred cchhhhcccCCC-CCCCcccccceeEEEeCCCCCCHHHHHHHHHhcccccc--cCCCC--------------------CC
Q psy259 31 NTFVDHLCGLDI-DNKSSYVRLTGIICTIGPASVAVDMLEKIIETESNSDE--CSEKP--------------------RE 87 (398)
Q Consensus 31 ~t~l~h~~~L~i-~~~~~~~r~t~Iictigp~~~~~e~l~~~i~~Gmnvr~--~~~~~--------------------~p 87 (398)
.+++.|.+.|++ ...+...|+|+|||||||+|.++|+|++|+++||||.+ |||+. +|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~ 97 (513)
T PTZ00066 18 ATNISLDKILEPISDNDLRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNAN 97 (513)
T ss_pred ccccchhhhccccccCcccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 366777777887 67778899999999999999999999999999999944 88852 12
Q ss_pred --------CC----C---C---C---------C----CCCCCCCcccHH-------------------------------
Q psy259 88 --------CP----S---E---P---------E----PPHCKEPNLYES------------------------------- 105 (398)
Q Consensus 88 --------gp----~---~---~---------~----~~k~~~~~~~vd------------------------------- 105 (398)
|| + + + + ..+++++.++++
T Consensus 98 iaIl~Dl~GPkiR~g~~~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~ 177 (513)
T PTZ00066 98 LGILLDTKGPEIRTGFLKNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDD 177 (513)
T ss_pred eEEEeeCCCCceeecccCCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEECC
Confidence 66 0 0 1 0 112333344432
Q ss_pred -----------------------------------------------------------HHHHHHHHhhchhcCCcccEE
Q psy259 106 -----------------------------------------------------------NVRLIEKLMATGEQGKHIKII 126 (398)
Q Consensus 106 -----------------------------------------------------------dV~~ir~~~~l~~~~~~~~ii 126 (398)
||+++|++ |++.|++++||
T Consensus 178 ~v~~~v~~gG~l~~~Kgvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~--l~~~g~~~~Ii 255 (513)
T PTZ00066 178 YIITKVLNNATIGERKNMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQL--LGERGRHIKII 255 (513)
T ss_pred EEEEEEEeCcEEcCCcccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHH--HHhCCCCceEE
Confidence 99999999 99888899999
Q ss_pred EeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhH
Q psy259 127 AKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDV 206 (398)
Q Consensus 127 aKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDV 206 (398)
||||+++|++|||||+++||||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||
T Consensus 256 AKIE~~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDV 335 (513)
T PTZ00066 256 PKIENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDV 335 (513)
T ss_pred EEECCHHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEE
Q psy259 207 ANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAI 286 (398)
Q Consensus 207 anav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aI 286 (398)
||||+||+||||||||||.|+||+|||++|++||+++|+.++|..+|.........+.+..+++|.+|+++|.+++|++|
T Consensus 336 aNAV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aI 415 (513)
T PTZ00066 336 ANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLI 415 (513)
T ss_pred HHHHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999999999999999876665455433211111224578999999999999999999
Q ss_pred EEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCHHHHHHHHHHHHHHcCCCCCCCe
Q psy259 287 VVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDP 366 (398)
Q Consensus 287 Iv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~d~~I~~ai~~ake~Glik~GD~ 366 (398)
|+||.||+||+++|||||+|||||+|++++++|||+|+|||+|++++.. .+.|++++.+++++++.|++++||.
T Consensus 416 v~~T~SG~TAr~iSk~RP~~pIia~t~~~~~~R~L~L~wGV~p~~~~~~------~~~~~~i~~a~~~~~~~g~~~~GD~ 489 (513)
T PTZ00066 416 IALTETGNTARLISKYRPSCTILALSASPSVVKSLSVARGVTTYVVNSF------QGTDVVIRNAIALAKERGLVESGDS 489 (513)
T ss_pred EEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEecCC------CCHHHHHHHHHHHHHHcCCCCCCCE
Confidence 9999999999999999999999999999999999999999999988643 6889999999999999999999999
Q ss_pred EEEEeccCCC-CCCCcEEEEEEcC
Q psy259 367 VIVVTGWKKG-AGFTNTVRIVYVS 389 (398)
Q Consensus 367 VVVvsG~~~g-~G~tNtiRI~~v~ 389 (398)
||+++|++.+ .|+||++||+.|+
T Consensus 490 vVv~~g~~~~~~g~tn~irv~~v~ 513 (513)
T PTZ00066 490 AIAVHGVKEEVAGSSNLMKVVKIP 513 (513)
T ss_pred EEEEeCCCCCCCCCCeEEEEEEcC
Confidence 9999999876 6999999999885
No 2
>KOG2323|consensus
Probab=100.00 E-value=1.6e-99 Score=775.86 Aligned_cols=355 Identities=54% Similarity=0.818 Sum_probs=335.4
Q ss_pred cchhhhcccCCC-CCCCcccccceeEEEeCCCCCCHHHHHHHHHhcccccc--cCCCC--CC------------------
Q psy259 31 NTFVDHLCGLDI-DNKSSYVRLTGIICTIGPASVAVDMLEKIIETESNSDE--CSEKP--RE------------------ 87 (398)
Q Consensus 31 ~t~l~h~~~L~i-~~~~~~~r~t~Iictigp~~~~~e~l~~~i~~Gmnvr~--~~~~~--~p------------------ 87 (398)
.++++|.|.|+. +.+|...|+|+|+|||||+++|+|+|++|+++||||-+ |||+. ++
T Consensus 1 ~s~~~~~~~L~~~~~~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~ 80 (501)
T KOG2323|consen 1 MSFLKHECLLSGSNGAPKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALP 80 (501)
T ss_pred CchhhhhhhhcccccccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcc
Confidence 378999999999 77789999999999999999999999999999999944 88863 11
Q ss_pred --------CC-----------------C-CC-------CCCCCCCCcccHH-----------------------------
Q psy259 88 --------CP-----------------S-EP-------EPPHCKEPNLYES----------------------------- 105 (398)
Q Consensus 88 --------gp-----------------~-~~-------~~~k~~~~~~~vd----------------------------- 105 (398)
|| + ++ |.++ .++++|+|
T Consensus 81 ~ai~LDtkGpEirtg~~~~~~~i~L~~G~~i~~t~d~~~~~~-~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~~~~ 159 (501)
T KOG2323|consen 81 CAIMLDTKGPEIRTGDLKNGKPIKLKEGQEITITTDYSYEAK-LSETISVDYKKLAKDVKPGDIIYVDDGLISLIVKSVS 159 (501)
T ss_pred hhhhhccCCCeEeecccCCCCceeecCCCEEEEEcChhhccc-cceEEEeehHHhhhccccCCEEEECCceeeeEEEEee
Confidence 66 0 11 5555 56777765
Q ss_pred -------------------------------------------------------------HHHHHHHHhhchhcCCccc
Q psy259 106 -------------------------------------------------------------NVRLIEKLMATGEQGKHIK 124 (398)
Q Consensus 106 -------------------------------------------------------------dV~~ir~~~~l~~~~~~~~ 124 (398)
|++++|++ |++.|++++
T Consensus 160 ~~~~~c~v~n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~iR~~--Lg~~g~~ik 237 (501)
T KOG2323|consen 160 KDEVTCRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVREVRKV--LGESGKNIK 237 (501)
T ss_pred cCceEEEEecCcccccccCcccCCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHHHHHH--hCccCCcce
Confidence 99999999 999999999
Q ss_pred EEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhh
Q psy259 125 IIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEIS 204 (398)
Q Consensus 125 iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvs 204 (398)
||+|||+++|+.|||||+.+|||+||||||||+|+|+|+||.+||.||.+||.+||||||||||||||+.+|+|||||+|
T Consensus 238 iisKIEn~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~S 317 (501)
T KOG2323|consen 238 LISKIENQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEAS 317 (501)
T ss_pred EEEEechhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCc
Q psy259 205 DVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284 (398)
Q Consensus 205 DVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~ 284 (398)
||+|||+||+||||||||||.|+||++||++|++||.+||+.+||..+|+++....+.+.++.+++|.+|+.+|.++.|.
T Consensus 318 DVanAVLdg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~ 397 (501)
T KOG2323|consen 318 DVANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKCLAS 397 (501)
T ss_pred HHHHHHhccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhhcce
Confidence 99999999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred EEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCHHHHHHHHHHHHHHcCCCCCC
Q psy259 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQG 364 (398)
Q Consensus 285 aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~d~~I~~ai~~ake~Glik~G 364 (398)
+|+|+|+||++|+++|+|||.||||+||+.+++|||+||||||+|++|+..+..+|.+|.|.++++|++.++++|+++.|
T Consensus 398 aIvv~T~sg~~a~lvskyrP~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~~g~~k~g 477 (501)
T KOG2323|consen 398 AIVVLTKSGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGILKKG 477 (501)
T ss_pred EEEEEecCcccHHHHhccCCCCCEEEEeccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHHhcchhhcC
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCCcEEEEEEc
Q psy259 365 DPVIVVTGWKKGAGFTNTVRIVYV 388 (398)
Q Consensus 365 D~VVVvsG~~~g~G~tNtiRI~~v 388 (398)
|.+|++.+|..+.|++|++++.++
T Consensus 478 d~~vvv~~~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 478 DVVVVVNKGKGGASVTNTIRVEKV 501 (501)
T ss_pred CEEEEEecccCCccceeeEEEeeC
Confidence 999999999999999999999764
No 3
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=3.8e-98 Score=775.89 Aligned_cols=275 Identities=33% Similarity=0.526 Sum_probs=252.1
Q ss_pred HHHHHHHHhhchhcCC--cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEE
Q psy259 106 NVRLIEKLMATGEQGK--HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVI 183 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~--~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi 183 (398)
||+++|++ |++.|. +++||||||+++|++|||||+++||||||||||||+|+|.|+||.+||+||++||++|||||
T Consensus 230 Dv~~~r~~--l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVI 307 (509)
T PLN02762 230 VIKHLKSY--IAARSRDSDIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVI 307 (509)
T ss_pred HHHHHHHH--HHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEE
Confidence 99999999 988764 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHh--hcCC
Q psy259 184 CATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELK--SMLP 261 (398)
Q Consensus 184 ~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~--~~~~ 261 (398)
+||||||||++||+|||||+|||||||+||+||||||||||.|+||+|||++|++||+++|+...+...+..+. ....
T Consensus 308 vATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~ 387 (509)
T PLN02762 308 VASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSS 387 (509)
T ss_pred EECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999998643211111110 1111
Q ss_pred -CCCChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCc
Q psy259 262 -LPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADW 340 (398)
Q Consensus 262 -~~~~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w 340 (398)
.+.+..+++|.+|+++|.+++|++||+||.||+||+++|||||++||||+|++++++|||+|+|||+|++.+..
T Consensus 388 ~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG~tA~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~----- 462 (509)
T PLN02762 388 SLSDRISEEICNSAAKMANNLGVDAIFVYTKHGHMASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDFS----- 462 (509)
T ss_pred ccccchHHHHHHHHHHHHhhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCC-----
Confidence 11356799999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCeEEEEeccCCCCCCCcEEEEEEcC
Q psy259 341 LRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYVS 389 (398)
Q Consensus 341 ~~d~d~~I~~ai~~ake~Glik~GD~VVVvsG~~~g~G~tNtiRI~~v~ 389 (398)
.|.|++++.++++++++|++++||.||+++|++. +|.||+|||.+|+
T Consensus 463 -~~~~~~~~~~~~~~~~~g~~~~GD~VVv~~g~~~-~g~tn~i~v~~v~ 509 (509)
T PLN02762 463 -DDMESNLNKTFSLLKARGMIKSGDLVIAVSDLTP-SSMLQSIQVRNVP 509 (509)
T ss_pred -CCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCC-CCCceEEEEEEcC
Confidence 7899999999999999999999999999999988 8999999999875
No 4
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=1.2e-96 Score=765.10 Aligned_cols=277 Identities=48% Similarity=0.715 Sum_probs=255.7
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
||+++|++ |++.|++++||||||+++||+|||||+++||||||||||||+|+|.|+||.+||+||++|+++|||||+|
T Consensus 221 DV~~~r~~--l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvA 298 (511)
T PLN02461 221 DLVEVRKV--LGEHAKSILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTA 298 (511)
T ss_pred HHHHHHHH--HHhCCCCCCEEEEECCHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEe
Confidence 99999999 9888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCC
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPID 265 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~ 265 (398)
|||||||++||+|||||++||||||+||+||||||||||+|+||+|||++|++||+++|+.++|..+|.........+.+
T Consensus 299 TQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~ 378 (511)
T PLN02461 299 TQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMS 378 (511)
T ss_pred ehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999976665555544211111335
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCC-------------hhhhhhccccccceEEec
Q psy259 266 SAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRF-------------PQVARQLHLHRSIIPLVY 332 (398)
Q Consensus 266 ~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n-------------~~taRqL~L~wGV~Pvl~ 332 (398)
..+++|.+|+++|.+++|++||+||.||+||+++|||||+|||||+|++ ++++|||+|+|||+|+++
T Consensus 379 ~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~ 458 (511)
T PLN02461 379 PLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLA 458 (511)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEe
Confidence 6799999999999999999999999999999999999999999999966 899999999999999988
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHHcCCCCCCCeEEEEeccCCCCCCCcEEEEEEc
Q psy259 333 EEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYV 388 (398)
Q Consensus 333 ~~~~~~~w~~d~d~~I~~ai~~ake~Glik~GD~VVVvsG~~~g~G~tNtiRI~~v 388 (398)
+......|.+|.|.+++.+++++++.|++++||.||+++|+ |+||++||.++
T Consensus 459 ~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~~~----g~tn~i~v~~v 510 (511)
T PLN02461 459 EGSAKATDSESTEEILEAAIEHAKKKGLCKPGDSVVALHRI----GGASVIKILTV 510 (511)
T ss_pred cccccccccCCHHHHHHHHHHHHHHcCCCCCcCEEEEEecC----CCCcEEEEEEe
Confidence 65333446789999999999999999999999999999884 78999999987
No 5
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-97 Score=758.28 Aligned_cols=274 Identities=50% Similarity=0.709 Sum_probs=254.9
Q ss_pred HHHHHHHHhhchhcCC-cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 106 NVRLIEKLMATGEQGK-HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~-~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
||.++|++ |.+.|. +++||||||+++||+|||||+++||||||||||||+|+|.++||.+||+||++||++|||||+
T Consensus 202 Dv~~~R~~--l~~~~~~~~~iiaKIE~~eav~NldeIi~~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVIt 279 (477)
T COG0469 202 DVEEVREI--LAETGGRDVKIIAKIENQEAVDNLDEIIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVIT 279 (477)
T ss_pred HHHHHHHH--HHHhCCCCceEEEeecCHHHHhHHHHHHHhcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEE
Confidence 99999999 876654 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCC
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPI 264 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 264 (398)
||||||||+.||+|||||+|||||||+||+||+|||||||.|+||+|||++|++||..+|+.+.+.+++... ..+...
T Consensus 280 ATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~--~~~~~~ 357 (477)
T COG0469 280 ATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVATMARIAKEAEKELPDNQLLRFR--VDPPDS 357 (477)
T ss_pred eeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcCCCHHHHHHHHHHHHHHHhcccchhhhhhhc--cccccc
Confidence 999999999999999999999999999999999999999999999999999999999999987633322221 123345
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCH
Q psy259 265 DSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344 (398)
Q Consensus 265 ~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~ 344 (398)
+..++++.+++++|..+++++|+++|.||+||+++|||||.+||||+|+|++++|+|+|+|||+|++++. |..+.
T Consensus 358 ~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~~pIia~t~~~~v~r~l~l~~GV~p~~~~~-----~~~~~ 432 (477)
T COG0469 358 SITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEAPIIALTPNERVARRLALVWGVYPLLVEE-----KPTST 432 (477)
T ss_pred cHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCCCCCcEEEECCCHHHHhhhceeecceeEEecC-----CCCcH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999974 34899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeccCCC-CCCCcEEEEEEc
Q psy259 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVYV 388 (398)
Q Consensus 345 d~~I~~ai~~ake~Glik~GD~VVVvsG~~~g-~G~tNtiRI~~v 388 (398)
++++..+++.+++.|++++||.||+++|.+.+ .|+||++||++|
T Consensus 433 ~~~~~~~~~~~~~~g~~~~gD~vvit~G~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 433 DEMVEEAVEKLLESGLVKKGDLVVITAGVPMGTVGTTNTIKVLTV 477 (477)
T ss_pred HHHHHHHHHHHHhcCcccCCCEEEEecCcccccCCCceeEEEEeC
Confidence 99999999999999999999999999998887 899999999875
No 6
>PLN02765 pyruvate kinase
Probab=100.00 E-value=8.8e-95 Score=751.72 Aligned_cols=277 Identities=38% Similarity=0.603 Sum_probs=249.9
Q ss_pred HHHHHHHHhhchhcCC-cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 106 NVRLIEKLMATGEQGK-HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~-~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
||.++|++ |++.|. +++||||||+++|++|||||+++||||||||||||+|+|.|+||.+||+||++|+++|||||+
T Consensus 234 DI~~~r~~--l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~ 311 (526)
T PLN02765 234 DVREAREF--LSSLGLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 311 (526)
T ss_pred HHHHHHHH--HHhcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE
Confidence 99999999 987775 899999999999999999999999999999999999999999999999999999999999995
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCC
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPI 264 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 264 (398)
|||||||++||+|||||+|||||||+||+||||||||||+|+||+|||++|++||+++|+.+++...|.........+.
T Consensus 312 -TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 390 (526)
T PLN02765 312 -TRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPM 390 (526)
T ss_pred -ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999987655433433211112233
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEe-CC------------hhhhhhccccccceEEe
Q psy259 265 DSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVT-RF------------PQVARQLHLHRSIIPLV 331 (398)
Q Consensus 265 ~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT-~n------------~~taRqL~L~wGV~Pvl 331 (398)
+..+++|.+|+++|.+++|++|||+|.||+||+++|||||+|||+|+| ++ ++++|||+|+|||+|++
T Consensus 391 ~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~ 470 (526)
T PLN02765 391 SHLESIASSAVRAAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPML 470 (526)
T ss_pred CHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEE
Confidence 456899999999999999999999999999999999999999999999 66 89999999999999998
Q ss_pred cCCCCC-CCcccCHHHHHHHHHHHHHHcCCCCCCCeEEEEeccCCCCCCCcEEEEEEcC
Q psy259 332 YEEPSP-ADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYVS 389 (398)
Q Consensus 332 ~~~~~~-~~w~~d~d~~I~~ai~~ake~Glik~GD~VVVvsG~~~g~G~tNtiRI~~v~ 389 (398)
++.... +.|..+.+.++..++++++++|++++||.||++++ .|+||++||..++
T Consensus 471 ~~~~~~~e~~~~~~~~~~~~a~~~~~~~g~~~~GD~vvv~~~----~g~tn~i~v~~v~ 525 (526)
T PLN02765 471 ADPRHSAESTSATNESVLKVALDHGKAAGVIKSHDRVVVCQK----VGDSSVVKIIELD 525 (526)
T ss_pred eccccccccccccHHHHHHHHHHHHHHcCCCCCCCEEEEEec----CCCCceEEEEEcC
Confidence 865422 23444578999999999999999999999999874 4789999999885
No 7
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=2e-94 Score=744.14 Aligned_cols=271 Identities=44% Similarity=0.633 Sum_probs=250.9
Q ss_pred HHHHHHHHhhchhcC-CcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 106 NVRLIEKLMATGEQG-KHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 106 dV~~ir~~~~l~~~~-~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
||+++|++ +.+.| .++.||||||+++|++|+|||++++|||||||||||+|+|.++||.+||+||++|+++|||||+
T Consensus 199 Dv~~~r~~--l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ 276 (470)
T PRK09206 199 DVLEIREH--LKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVIT 276 (470)
T ss_pred HHHHHHHH--HHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999 88776 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCC
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPI 264 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 264 (398)
||||||||++||+|||||+|||||||+||+||||||||||+|+||+|||++|++||+++|+.+.+. +..... ....
T Consensus 277 ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~--~~~~~~--~~~~ 352 (470)
T PRK09206 277 ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSR--LESNND--NRKL 352 (470)
T ss_pred EchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhcchh--hhhhcc--ccCC
Confidence 999999999999999999999999999999999999999999999999999999999999865432 211110 1113
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCH
Q psy259 265 DSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344 (398)
Q Consensus 265 ~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~ 344 (398)
+..+++|.+|+++|.+++|++||++|.||+||+++|||||+|||||+|++++++|||+|+|||+|++++.. .+.
T Consensus 353 ~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~------~~~ 426 (470)
T PRK09206 353 RITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPDATILALTTNEKTARQLVLSKGVVPQLVKEI------AST 426 (470)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCC------CCH
Confidence 56799999999999999999999999999999999999999999999999999999999999999998654 688
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeccCCCCCCCcEEEEEEc
Q psy259 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYV 388 (398)
Q Consensus 345 d~~I~~ai~~ake~Glik~GD~VVVvsG~~~g~G~tNtiRI~~v 388 (398)
|+++..+++++++.|++++||.||+++|++...|+||++||.++
T Consensus 427 ~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~~g~tn~i~v~~~ 470 (470)
T PRK09206 427 DDFYRLGKELALQSGLAQKGDVVVMVSGALVPSGTTNTASVHVL 470 (470)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCeEEEEEEC
Confidence 99999999999999999999999999999755799999999863
No 8
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=1.4e-93 Score=737.62 Aligned_cols=271 Identities=40% Similarity=0.615 Sum_probs=251.8
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
||+++|++ ++ +++.||||||+++|++|+|||++++|||||||||||+|+|.++|+.+||+|+++|+++|||||+|
T Consensus 200 Di~~~r~~--l~---~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~A 274 (476)
T PRK06247 200 DVEEVRKI--IG---GRVPVMAKIEKPQAIDRLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVA 274 (476)
T ss_pred HHHHHHHH--hh---hcCeEEEEECCHHHHHhHHHHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999 84 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCC
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPID 265 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~ 265 (398)
|||||||++||+|||||++||||||+||+||+|||||||+|+||+|||++|++||+++|+.+++...|..... ....+
T Consensus 275 TQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~ 352 (476)
T PRK06247 275 TQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYPVEAVRTMARIIRQVERDPTYPPLIHAQRP--QPEAT 352 (476)
T ss_pred CchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCHHHHHHHHHHHHHHHhhccchhhhhhhccc--ccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999987554433322111 11235
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCHH
Q psy259 266 SAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVD 345 (398)
Q Consensus 266 ~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~d 345 (398)
..+++|.+|+++|.++++++||++|.||+||+++|||||+|||+|+|++++++|+|+|+|||+|++++.. .|.+
T Consensus 353 ~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~isk~RP~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~------~~~~ 426 (476)
T PRK06247 353 KRDAISYAARDIAERLDLAALVAYTSSGDTALRAARERPPLPILALTPNPETARRLALTWGVHCVVVDDA------RDTD 426 (476)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCCeeEecCCC------CCHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999998654 7889
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeccCCC-CCCCcEEEEEEcC
Q psy259 346 TRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVYVS 389 (398)
Q Consensus 346 ~~I~~ai~~ake~Glik~GD~VVVvsG~~~g-~G~tNtiRI~~v~ 389 (398)
+++..+++++++.|++++||.||+++|++.+ .|+||++||.+|+
T Consensus 427 ~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~~~g~tn~i~v~~v~ 471 (476)
T PRK06247 427 DMVRRADRIALAEGFYKRGDRVVIVAGVPPGTPGSTNMLRIAYIG 471 (476)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCeEEEEEEeC
Confidence 9999999999999999999999999999876 6999999999996
No 9
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=4.5e-93 Score=751.83 Aligned_cols=273 Identities=44% Similarity=0.661 Sum_probs=255.0
Q ss_pred HHHHHHHHhhchh-cCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 106 NVRLIEKLMATGE-QGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 106 dV~~ir~~~~l~~-~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
||+++|++ +.+ .+.+++||||||+++|++|+|||++++|||||||||||+|+|.++||.+||+|+++|+++|||||+
T Consensus 205 dv~~~r~~--l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 205 DVLEIREL--IEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred HHHHHHHH--HHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999 844 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCC
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPI 264 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 264 (398)
||||||||++||+|||||+|||||||+||+||+|||||||+|+||+|||++|++||+++|+.++|..+|..... ...
T Consensus 283 ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~---~~~ 359 (590)
T PRK06354 283 ATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPE---FTT 359 (590)
T ss_pred EchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhhccc---cCC
Confidence 99999999999999999999999999999999999999999999999999999999999997665444433211 123
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCH
Q psy259 265 DSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344 (398)
Q Consensus 265 ~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~ 344 (398)
+..+++|.+|+++|.+++|++||++|.||+||+++|||||+|||||+|++++++|||+|+|||+|++++.. .+.
T Consensus 360 ~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~------~~~ 433 (590)
T PRK06354 360 TITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTPILAVTPNESVARRLQLVWGVTPLLVLDA------PST 433 (590)
T ss_pred CHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCC------CCH
Confidence 56789999999999999999999999999999999999999999999999999999999999999998754 678
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeccCCC-CCCCcEEEEEEcC
Q psy259 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVYVS 389 (398)
Q Consensus 345 d~~I~~ai~~ake~Glik~GD~VVVvsG~~~g-~G~tNtiRI~~v~ 389 (398)
+++++.+++++++.|++++||.||+++|++.+ .|+||++||++++
T Consensus 434 ~~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~~~~g~tn~~~v~~v~ 479 (590)
T PRK06354 434 DETFDAAINVAQESGLLKQGDLVVITAGTLVGESGSTDLMKVHVVG 479 (590)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCcCCCceeEEEEEec
Confidence 99999999999999999999999999999876 6999999999994
No 10
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=2.8e-91 Score=723.71 Aligned_cols=280 Identities=59% Similarity=0.925 Sum_probs=258.8
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
||+++|++ +...|.++.||+|||+++|++|+|||++++|||||||||||+++|.++|+.+||+|+++|+++|||||+|
T Consensus 201 di~~~r~~--l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~A 278 (480)
T cd00288 201 DVLEIREV--LGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITA 278 (480)
T ss_pred HHHHHHHH--HHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999 8888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCC
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPID 265 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~ 265 (398)
|||||||++||+|||||++||||||+||+||+|||||||+|+||+|||++|++||+++|+.+++...|.......+...+
T Consensus 279 TqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~ 358 (480)
T cd00288 279 TQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTS 358 (480)
T ss_pred chhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999875554334322211111224
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCHH
Q psy259 266 SAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVD 345 (398)
Q Consensus 266 ~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~d 345 (398)
..++++.+|+++|.++++++||++|+||+||+++|||||.+||||+|++++++|+|+|+|||+|++++..+ ..|..+.|
T Consensus 359 ~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP~~pIiavT~~~~~~r~l~l~~GV~p~~~~~~~-~~~~~~~~ 437 (480)
T cd00288 359 TTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNAPIIAVTRNEQTARQLHLYRGVYPVLFEEPK-PGWQEDTD 437 (480)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHhhheeeccCcEEEEecccc-cccCCCHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999886543 37999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeccCCCCCCCcEEEEEEc
Q psy259 346 TRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYV 388 (398)
Q Consensus 346 ~~I~~ai~~ake~Glik~GD~VVVvsG~~~g~G~tNtiRI~~v 388 (398)
+++..+.++++++|++++||.||+++|++.+.|+||++||+++
T Consensus 438 ~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~~~~~tn~i~v~~~ 480 (480)
T cd00288 438 ARLKAAVNVAKEKGLLKKGDLVVVVQGWPVGSGSTNTMRILTV 480 (480)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCeEEEEEEC
Confidence 9999999999999999999999999999877799999999875
No 11
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=1.2e-89 Score=709.16 Aligned_cols=260 Identities=48% Similarity=0.676 Sum_probs=242.0
Q ss_pred HHHHHHHHhhchhcCC-cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 106 NVRLIEKLMATGEQGK-HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~-~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
|++++|++ +.+.|. ++.||+|||+++|++|+|||++++|||||||||||+++|.++|+.+||+|+++|+++|||||+
T Consensus 200 dv~~l~~~--l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 200 DVEEARRL--LREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVIT 277 (465)
T ss_pred HHHHHHHH--HHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999 988888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCC
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPI 264 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 264 (398)
||||||||++||+|||||++||||||+||+||+|||||||+|+||+|||++|++||+++|+.+++...+..+ .....
T Consensus 278 ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~---~~~~~ 354 (465)
T PRK05826 278 ATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSINLSKHRL---DRQFD 354 (465)
T ss_pred ECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchhhhhhhc---ccccc
Confidence 999999999999999999999999999999999999999999999999999999999999876543222211 11113
Q ss_pred ChHHHHHHHHHHHHHhcC-CcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccC
Q psy259 265 DSAHSVAIAAVEAASKVF-AGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRD 343 (398)
Q Consensus 265 ~~~~~ia~aav~~A~~~~-A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d 343 (398)
+..+++|.+|+++|.+++ |++|||+|.||+||+++|||||+|||||+|++++++|||+|+|||+|++++.. .|
T Consensus 355 ~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP~~pI~~~t~~~~~~r~l~l~~GV~p~~~~~~------~~ 428 (465)
T PRK05826 355 RIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRPGAPIFAVTRDEKTQRRLALYRGVYPVLFDSA------AD 428 (465)
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHHHHhhcccCcEEEEeCCC------CC
Confidence 567999999999999999 99999999999999999999999999999999999999999999999998653 58
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEeccCCC
Q psy259 344 VDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG 376 (398)
Q Consensus 344 ~d~~I~~ai~~ake~Glik~GD~VVVvsG~~~g 376 (398)
.+.++..++++++++|++++||.||+++|++.+
T Consensus 429 ~~~~~~~a~~~~~~~g~~~~gd~vvvv~g~~~~ 461 (465)
T PRK05826 429 TDDAAEEALRLLLEKGLVESGDLVVVTSGDPMG 461 (465)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCC
Confidence 899999999999999999999999999998754
No 12
>PLN02623 pyruvate kinase
Probab=100.00 E-value=3.1e-86 Score=692.79 Aligned_cols=272 Identities=35% Similarity=0.507 Sum_probs=250.7
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
||+++|++ +...|.++.||+|||+++||+|+|||++.+|||||||||||+++|.++|+.+||+|+++|+++|||||+|
T Consensus 305 DV~~~r~~--l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpviva 382 (581)
T PLN02623 305 VVHELKDY--LKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVA 382 (581)
T ss_pred HHHHHHHH--HHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999 9888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCC
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPID 265 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~ 265 (398)
|||||||+.+|.|||||++||+|++.||+|++|||+||+.|+||+|||++|++||+++|+.+++...+..+... ...+
T Consensus 383 TQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~--~~~~ 460 (581)
T PLN02623 383 TNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQA--FKNH 460 (581)
T ss_pred CchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccc--cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999875443222211111 1235
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCHH
Q psy259 266 SAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVD 345 (398)
Q Consensus 266 ~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~d 345 (398)
..+++|.+|+++|..++++ ||+||+||+||+++|||||+|||||+|++++++|||+|+|||+|++++. ..+.|
T Consensus 461 ~~~~ia~sA~~~A~~l~a~-Ivv~T~sG~tA~~lSr~RP~~pI~avT~~~~~aR~L~L~~GV~P~~~~~------~~~~e 533 (581)
T PLN02623 461 MSEMFAFHATMMANTLGTS-IIVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCPIYMQF------SDDAE 533 (581)
T ss_pred hHHHHHHHHHHHHHhcCCc-EEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccccEEEecCC------CCCHH
Confidence 6789999999999999998 9999999999999999999999999999999999999999999998754 37899
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEecc--CCC-CCCCcEEEEEEc
Q psy259 346 TRVAHGIKYGRDRKFLNQGDPVIVVTGW--KKG-AGFTNTVRIVYV 388 (398)
Q Consensus 346 ~~I~~ai~~ake~Glik~GD~VVVvsG~--~~g-~G~tNtiRI~~v 388 (398)
++++.+++++++.|++++||.||+++|+ +.+ .|+||++||++|
T Consensus 534 ~~i~~a~~~~~~~g~v~~GD~vviv~g~~~p~~~~g~tn~i~V~~v 579 (581)
T PLN02623 534 ETFARALSLLLNKGMVKEGEEVALVQSGRQPIWRSESTHHIQVRKV 579 (581)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEeccCCCCCCCCCCeEEEEEEe
Confidence 9999999999999999999999999984 334 689999999987
No 13
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=2.2e-86 Score=681.85 Aligned_cols=294 Identities=47% Similarity=0.743 Sum_probs=267.4
Q ss_pred CCCCCCCCccc-HH---------------HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCC
Q psy259 93 EPPHCKEPNLY-ES---------------NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLG 156 (398)
Q Consensus 93 ~~~k~~~~~~~-vd---------------dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg 156 (398)
+++||.+++.| +| ||+++|++ ++..|.++.||||||+++||+|||||++.+|||||||||||
T Consensus 145 ltekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~--l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLg 222 (454)
T PTZ00300 145 VSAKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKA--LGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLG 222 (454)
T ss_pred CChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH--HHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhh
Confidence 78888888877 33 99999999 98888899999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHH
Q psy259 157 IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAM 236 (398)
Q Consensus 157 ~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m 236 (398)
+|+|.|+||.+||+|+++|+++|||||+||||||||++||+|||||+|||||||+||+||||||||||+|+||+|||++|
T Consensus 223 vei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m 302 (454)
T PTZ00300 223 VEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYM 302 (454)
T ss_pred hhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChh
Q psy259 237 HNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQ 316 (398)
Q Consensus 237 ~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~ 316 (398)
++||+++|+.+++..+|.......+.+.+..+++|.+|+++|.+++|++||++|.||+||+++|||||+|||||+|++++
T Consensus 303 ~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t~~~~ 382 (454)
T PTZ00300 303 ARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQ 382 (454)
T ss_pred HHHHHHHHhhhchhhhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHH
Confidence 99999999875444444433221222335579999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccceEEecCCCCCCCcccCHHHHHHHHHHHHHHcCCCCCCCeEEEEeccCCCCCCCcEEEEEEcC
Q psy259 317 VARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYVS 389 (398)
Q Consensus 317 taRqL~L~wGV~Pvl~~~~~~~~w~~d~d~~I~~ai~~ake~Glik~GD~VVVvsG~~~g~G~tNtiRI~~v~ 389 (398)
++|||+|+|||+|++++... .....+.++++..+++++++.|++++||.||+++|++.+.|+||++||+.|+
T Consensus 383 ~ar~l~l~~GV~p~~~~~~~-~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~~~~~g~tn~i~v~~~~ 454 (454)
T PTZ00300 383 TCRQLNITQGVESVFFDAER-LGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIILVS 454 (454)
T ss_pred HHHHhhcccCcEEEEecccc-ccccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEeC
Confidence 99999999999999886421 1223678999999999999999999999999999999888999999999873
No 14
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=1.7e-82 Score=659.16 Aligned_cols=273 Identities=54% Similarity=0.791 Sum_probs=249.7
Q ss_pred HHHHHHHHhhchhcC-CcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 106 NVRLIEKLMATGEQG-KHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 106 dV~~ir~~~~l~~~~-~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
||+.+|++ |.+.+ .++.||+|||+++|++|++||++++||+|+|||||++++|.++++.+|++|+.+|+++|||+|+
T Consensus 198 dv~~l~~~--l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~ 275 (473)
T TIGR01064 198 DVLEVREV--LGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVIT 275 (473)
T ss_pred HHHHHHHH--HHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999 87777 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCC
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPI 264 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 264 (398)
||||||||+.||+|||||++||+|+++||+|++|||+||+.|+||+|||++|++||+++|+...+...|...........
T Consensus 276 atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~ 355 (473)
T TIGR01064 276 ATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPS 355 (473)
T ss_pred EChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999986544333433211011123
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCH
Q psy259 265 DSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344 (398)
Q Consensus 265 ~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~ 344 (398)
+..+++|.+|+++|.+++|++||+||+||+||+++|||||+|||||+|+|++++|+|+|+|||+|++++. |..+.
T Consensus 356 ~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~~PIiAvT~~~~v~R~L~L~wGV~Pil~~~-----~~~~~ 430 (473)
T TIGR01064 356 TITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPIIAVTPNERVARQLALYWGVFPFLVDE-----EPSDT 430 (473)
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCCCCEEEEcCCHHHHHHhhccCCcEEEEeCC-----CCCCH
Confidence 5679999999999999999999999999999999999999999999999999999999999999998864 34788
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEecc-CCC-CCCCcEEEE
Q psy259 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGW-KKG-AGFTNTVRI 385 (398)
Q Consensus 345 d~~I~~ai~~ake~Glik~GD~VVVvsG~-~~g-~G~tNtiRI 385 (398)
++++..+++++++.|++++||.||+++|| +.+ .|+||++||
T Consensus 431 ~~~i~~a~~~l~~~gl~~~GD~VVvv~g~~~~~~~~~~n~i~v 473 (473)
T TIGR01064 431 EARVNKALELLKEKGILKKGDLVVVIQGGAPIGGVGGTNTIRV 473 (473)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCeEEeC
Confidence 99999999999999999999999999997 544 689999985
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=1.2e-66 Score=522.70 Aligned_cols=146 Identities=62% Similarity=0.901 Sum_probs=137.6
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
||.++|++ |++.|++++||||||+++|++|||||+++||||||||||||+|+|+|+||.+||+||++|+++|||||+|
T Consensus 203 dV~~lr~~--l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~A 280 (348)
T PF00224_consen 203 DVKELRKI--LGEKGKDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVA 280 (348)
T ss_dssp HHHHHHHH--HTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEE
T ss_pred HHHHHHHH--hhhcCcccceeeccccHHHHhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeeh
Confidence 99999999 9998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHH
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLL 253 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~ 253 (398)
|||||||+++|+|||||++||||||+||+||+|||||||+|+||+|||++|++||+++|+.++|.+.|
T Consensus 281 Tq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~~~i~~~~E~~~~~~~~~ 348 (348)
T PF00224_consen 281 TQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTMARIIREAEKYLDYRNVF 348 (348)
T ss_dssp SSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred hHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999887765
No 16
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=1.2e-65 Score=513.86 Aligned_cols=140 Identities=44% Similarity=0.648 Sum_probs=136.6
Q ss_pred HHHHHHHHhhchhcC-CcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 106 NVRLIEKLMATGEQG-KHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 106 dV~~ir~~~~l~~~~-~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
||+++|++ |++.| .+++||||||+++|++||+||+++||||||||||||+|+|.|+||.+||+||++|+++|||||+
T Consensus 192 Dv~~~r~~--l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIv 269 (352)
T PRK06739 192 HIKEIRDF--IQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVIT 269 (352)
T ss_pred HHHHHHHH--HHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999 98875 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhh
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAI 247 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~ 247 (398)
||||||||++||+|||||++||||||+||+||+|||||||+|+||+|||++|++||+++|+..
T Consensus 270 ATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~ 332 (352)
T PRK06739 270 ATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIESVSTLRLVSEFAEHVK 332 (352)
T ss_pred EcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999753
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=7.6e-54 Score=449.19 Aligned_cols=133 Identities=39% Similarity=0.578 Sum_probs=129.3
Q ss_pred HHHHHHHHhhchhcC-CcccEEEeecChHHHhcHHHHHHhc-----CeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcC
Q psy259 106 NVRLIEKLMATGEQG-KHIKIIAKIENHQGVKNLDEIIAEA-----DGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVG 179 (398)
Q Consensus 106 dV~~ir~~~~l~~~~-~~~~iiaKIE~~~~v~n~deIl~~s-----DgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~g 179 (398)
||.++|++ |.+.| .++.|||||||++|++||+||+.++ |||||||||||+|+|.|+||.+||+||++|+++|
T Consensus 458 DV~~lr~~--L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~~ 535 (608)
T PRK14725 458 DVRLLLDA--LEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAH 535 (608)
T ss_pred HHHHHHHH--HHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHHHHHHHHHHHHHHcC
Confidence 99999999 88765 4899999999999999999999997 9999999999999999999999999999999999
Q ss_pred CCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 180 KPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 180 kpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
||||+||||||||++||+|||||+||||||+ |+|||||| +|+||+|||++|++||+++|..
T Consensus 536 kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I~~r~e~~ 596 (608)
T PRK14725 536 VPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDILRRMEEH 596 (608)
T ss_pred CCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 99999999 9999999999999999999975
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=1.6e-51 Score=427.41 Aligned_cols=133 Identities=36% Similarity=0.568 Sum_probs=128.6
Q ss_pred HHHHHHHHhhchhcC----CcccEEEeecChHHHhcHHHHHHhcC-----eeEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q psy259 106 NVRLIEKLMATGEQG----KHIKIIAKIENHQGVKNLDEIIAEAD-----GIMVARGDLGIEIPPWKVFLAQKQMIAKCN 176 (398)
Q Consensus 106 dV~~ir~~~~l~~~~----~~~~iiaKIE~~~~v~n~deIl~~sD-----gimvaRgDLg~e~~~~~v~~~qk~ii~~c~ 176 (398)
||..+|++ |.+.+ .++.||+||||++|++|++||+.++| ||||||||||+|+|.+++|.+|++|+.+|+
T Consensus 338 DV~~l~~~--L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~cr 415 (493)
T PRK08187 338 DVEALQAA--LAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCE 415 (493)
T ss_pred HHHHHHHH--HHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHH
Confidence 99999999 87655 48999999999999999999999988 999999999999999999999999999999
Q ss_pred HcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 177 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 177 ~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
++|||||+||||||||++||+|||||+|||||| ||+|||||| +|+||+|||++|++|+.++|+.
T Consensus 416 aagkpvI~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~ 479 (493)
T PRK08187 416 AAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGH 479 (493)
T ss_pred HhCCCeEEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 999999999 9999999999999999999975
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.98 E-value=7.8e-32 Score=230.86 Aligned_cols=116 Identities=47% Similarity=0.677 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCHHH
Q psy259 267 AHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVDT 346 (398)
Q Consensus 267 ~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~d~ 346 (398)
+|+++.+|+++|.+++|++|||+|+||+||+++|||||.|||||+|++++++|||+|+|||+|++++.. ..|.++
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~-----~~~~~~ 75 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEF-----DKDTEE 75 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSH-----SHSHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEeccc-----cccHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999998875 248999
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeccCCC-CCCCcEEEEEE
Q psy259 347 RVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVY 387 (398)
Q Consensus 347 ~I~~ai~~ake~Glik~GD~VVVvsG~~~g-~G~tNtiRI~~ 387 (398)
+++.+++.++++|++++||.||+++|++.+ .|.||+|||++
T Consensus 76 ~~~~a~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 76 LIAEALEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp HHHHHHHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 999999999999999999999999999887 79999999974
No 20
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=7.8e-12 Score=118.95 Aligned_cols=144 Identities=19% Similarity=0.283 Sum_probs=113.2
Q ss_pred EeCCCCCCHHHHHHHHHhcccc------------cccCCCC-CC--CC---CCCCCCCCCCCcccHHHHHHHHHHhhchh
Q psy259 57 TIGPASVAVDMLEKIIETESNS------------DECSEKP-RE--CP---SEPEPPHCKEPNLYESNVRLIEKLMATGE 118 (398)
Q Consensus 57 tigp~~~~~e~l~~~i~~Gmnv------------r~~~~~~-~p--gp---~~~~~~k~~~~~~~vddV~~ir~~~~l~~ 118 (398)
-+.|...+..+|+++++.|..- |++.+.. || |- +..+.- ---| ..+-++ |..
T Consensus 71 vVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~ar----Asr~----~~i~dy--l~~ 140 (255)
T COG3836 71 VVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALAR----ASRF----GRIADY--LAQ 140 (255)
T ss_pred eeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhh----hhhc----CCHHHH--HHh
Confidence 3578999999999999999887 3344444 55 21 111110 0011 234456 777
Q ss_pred cCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCCh------hhHHHHHHHHHHHHHHcCCCEEEeehhhH
Q psy259 119 QGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPP------WKVFLAQKQMIAKCNKVGKPVICATQMLE 190 (398)
Q Consensus 119 ~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~ATQmLe 190 (398)
.+.++.++++||+.+|++|+|+|+++ .||||||++||+.+++. ++|..+...++.+.+.+||..++
T Consensus 141 An~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagi------ 214 (255)
T COG3836 141 ANDEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGI------ 214 (255)
T ss_pred cccceEEEEEEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccc------
Confidence 89999999999999999999999999 99999999999999986 88999999999999999999997
Q ss_pred HhhcCCCCCchhhhhHHHHHHhCCcEEEecCccC
Q psy259 191 SMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224 (398)
Q Consensus 191 SMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA 224 (398)
..+.|. |....+..|+..+-+..+|.
T Consensus 215 ---l~~~p~-----~a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 215 ---LAADPA-----DARRYLALGATFVAVGSDTG 240 (255)
T ss_pred ---ccCCHH-----HHHHHHHhCCeEEEEeccHH
Confidence 344444 45899999999999988764
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.17 E-value=5e-11 Score=115.83 Aligned_cols=155 Identities=18% Similarity=0.252 Sum_probs=113.5
Q ss_pred ccccceeEEEeCCCCCCHHHHHHHHHhcccc------------cccCCCC-CC--CCCCCCCCCCCCCcccHHHHHHHHH
Q psy259 48 YVRLTGIICTIGPASVAVDMLEKIIETESNS------------DECSEKP-RE--CPSEPEPPHCKEPNLYESNVRLIEK 112 (398)
Q Consensus 48 ~~r~t~Iictigp~~~~~e~l~~~i~~Gmnv------------r~~~~~~-~p--gp~~~~~~k~~~~~~~vddV~~ir~ 112 (398)
..+.+++.+-+.+++.+...|++.+++|..- |++.... || |-..+ .. .....-| ....+
T Consensus 64 a~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~-~~-~~~~~~y----~~~~~ 137 (256)
T PRK10558 64 ALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGV-SV-SHRANMF----GTVPD 137 (256)
T ss_pred HHhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCC-Cc-ccccccc----CChHH
Confidence 4567778787889999999999999999854 2221111 33 21000 00 0011112 11234
Q ss_pred HhhchhcCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCCh------hhHHHHHHHHHHHHHHcCCCEEE
Q psy259 113 LMATGEQGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPP------WKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 113 ~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
+ +...+.++.++++|||++|++|+|||+++ .|++++|++||+.+++. +++..+..+++.+|+++|||+++
T Consensus 138 y--~~~an~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~ 215 (256)
T PRK10558 138 Y--FAQSNKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGI 215 (256)
T ss_pred H--HHHhccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEE
Confidence 5 56667889999999999999999999987 89999999999998874 57888999999999999999986
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccC
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA 224 (398)
. .++- .++..++..|++.+.++.++.
T Consensus 216 ~-----------~~~~---~~~~~~~~~G~~~v~~~~D~~ 241 (256)
T PRK10558 216 L-----------APVE---ADARRYLEWGATFVAVGSDLG 241 (256)
T ss_pred c-----------CCCH---HHHHHHHHcCCCEEEEchHHH
Confidence 2 1221 346888999999999987754
No 22
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.16 E-value=5.2e-11 Score=115.26 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=111.7
Q ss_pred cccceeEEEeCCCCCCHHHHHHHHHhcccc------------cccCCCC-CC--CCCCCCCCCCCCCcccHHHHHHHHHH
Q psy259 49 VRLTGIICTIGPASVAVDMLEKIIETESNS------------DECSEKP-RE--CPSEPEPPHCKEPNLYESNVRLIEKL 113 (398)
Q Consensus 49 ~r~t~Iictigp~~~~~e~l~~~i~~Gmnv------------r~~~~~~-~p--gp~~~~~~k~~~~~~~vddV~~ir~~ 113 (398)
.+.+++-.-+.+++++...+++.+++|..- |++.... || |---+ .- .....-| ....++
T Consensus 58 ~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~-~~-~~r~~~y----~~~~~y 131 (249)
T TIGR03239 58 LKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGV-SV-SHRSNRY----GTVPDY 131 (249)
T ss_pred HhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCC-Cc-chhhhcc----CChHHH
Confidence 455666666788899999999999999874 2211111 33 21000 00 0011112 111245
Q ss_pred hhchhcCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCCh------hhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 114 MATGEQGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPP------WKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 114 ~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
+...+.++.++++|||++|++|+|||+++ .|++++|++||+.+++. +.+..+..+++.+|+++|||+++.
T Consensus 132 --~~~~n~~~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~ 209 (249)
T TIGR03239 132 --FATINDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL 209 (249)
T ss_pred --HHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 55567889999999999999999999988 89999999999998875 578889999999999999999862
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccC
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA 224 (398)
.+.| .++...+..|++.++++.++.
T Consensus 210 ---------~~~~-----~~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 210 ---------APVE-----ADARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred ---------CCCH-----HHHHHHHHcCCCEEEEhHHHH
Confidence 2222 366889999999999987765
No 23
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.10 E-value=1.1e-10 Score=114.07 Aligned_cols=151 Identities=15% Similarity=0.210 Sum_probs=113.5
Q ss_pred ccccceeEEEeCCCCCCHHHHHHHHHhcccc------------cccCCCC-CC-------CCCCCCCCCCCCCcccHHHH
Q psy259 48 YVRLTGIICTIGPASVAVDMLEKIIETESNS------------DECSEKP-RE-------CPSEPEPPHCKEPNLYESNV 107 (398)
Q Consensus 48 ~~r~t~Iictigp~~~~~e~l~~~i~~Gmnv------------r~~~~~~-~p-------gp~~~~~~k~~~~~~~vddV 107 (398)
..+.+++.+-+.+.+.+...+++.+++|..- |++.... || ||... ...-|-
T Consensus 63 a~~~~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~------r~~~yg--- 133 (267)
T PRK10128 63 AIAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVA------RAARWG--- 133 (267)
T ss_pred HHHhcCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccc------hhhccC---
Confidence 4556777777788999999999999999885 2211111 33 22100 111110
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCCh------hhHHHHHHHHHHHHHHcC
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPP------WKVFLAQKQMIAKCNKVG 179 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~------~~v~~~qk~ii~~c~~~g 179 (398)
..-++ +...+.++.+|++||+++|++|+|||+++ .|++++|++||+.+++. ++|..+.++++++|+++|
T Consensus 134 -~~~~y--~~~an~~~~vi~qiEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~G 210 (267)
T PRK10128 134 -RIENY--MAQANDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAG 210 (267)
T ss_pred -ChHHH--HHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 01245 55567889999999999999999999998 89999999999999984 889999999999999999
Q ss_pred CCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccC
Q psy259 180 KPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224 (398)
Q Consensus 180 kpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA 224 (398)
||+++. .+.| .++...+..|++.+.++.++.
T Consensus 211 k~~G~~---------~~~~-----~~a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 211 KAAGFL---------AVDP-----DMAQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred CeEEEc---------CCCH-----HHHHHHHHcCCcEEEEChHHH
Confidence 999962 1222 456889999999999998754
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=98.88 E-value=2.5e-09 Score=103.57 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=80.9
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCCh------hhHHHHHHHHHHHHHHcCCCEEEeeh
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPP------WKVFLAQKQMIAKCNKVGKPVICATQ 187 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~ATQ 187 (398)
+...+.++.+|++||+++|++|+|||+++ .|++++|++||+.+++. +++..+.++++++|+.+||+.++.
T Consensus 133 ~~~~n~~~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~-- 210 (249)
T TIGR02311 133 LQQADEEICVLLQVETREALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGIL-- 210 (249)
T ss_pred HHHhhhceEEEEEecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeec--
Confidence 55567789999999999999999999988 89999999999999985 567778888999999999999972
Q ss_pred hhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccC
Q psy259 188 MLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224 (398)
Q Consensus 188 mLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA 224 (398)
...| .+....+..|++.++++.|+.
T Consensus 211 -------~~~~-----~~~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 211 -------TADP-----KLARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred -------CCCH-----HHHHHHHHcCCCEEEEchHHH
Confidence 1222 355888999999999998764
No 25
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=98.52 E-value=3.6e-07 Score=101.50 Aligned_cols=122 Identities=20% Similarity=0.157 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhchhc-----CCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCC-CC---------------hhh
Q psy259 105 SNVRLIEKLMATGEQ-----GKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIE-IP---------------PWK 163 (398)
Q Consensus 105 ddV~~ir~~~~l~~~-----~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e-~~---------------~~~ 163 (398)
++++++++. +... +.+++++++||+++|+.|+|+|++++|+++||++||+.. ++ .+.
T Consensus 649 eEa~~~~~~--~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPa 726 (795)
T PRK06464 649 EEAEKVIEL--LAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPA 726 (795)
T ss_pred HHHHHHHHH--HHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEECchHHHHHHhCcCCCchhhhhccCCCCHH
Confidence 355555555 4322 237899999999999999999999999999999999963 32 378
Q ss_pred HHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHH
Q psy259 164 VFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 164 v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~a 243 (398)
|..+.+++++.|+++|||++++.+|.-. .|.. +.-.+..|++.+..+. +++-.+.+.++.+
T Consensus 727 v~~ai~~vi~aa~~~g~~vgicge~a~~-----~p~~-----~~~l~~~G~~~ls~~~---------d~~~~~k~~i~~~ 787 (795)
T PRK06464 727 VKKLISMAIKAAKKAGKYVGICGQAPSD-----HPDF-----AEWLVEEGIDSISLNP---------DAVVDTWLAVAEV 787 (795)
T ss_pred HHHHHHHHHHHHHHcCCEEEEcCCCCCC-----cHHH-----HHHHHHCCCCEEEEcc---------hhHHHHHHHHHHh
Confidence 8999999999999999999987654321 0322 3567778999999975 4566677777777
Q ss_pred Hhhh
Q psy259 244 EAAI 247 (398)
Q Consensus 244 E~~~ 247 (398)
|+.+
T Consensus 788 ~~~~ 791 (795)
T PRK06464 788 EKKI 791 (795)
T ss_pred HHHh
Confidence 7643
No 26
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=98.50 E-value=6.5e-08 Score=91.35 Aligned_cols=78 Identities=29% Similarity=0.393 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhchhc-------CCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCCh------hhHHHHHH
Q psy259 105 SNVRLIEKLMATGEQ-------GKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPP------WKVFLAQK 169 (398)
Q Consensus 105 ddV~~ir~~~~l~~~-------~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~------~~v~~~qk 169 (398)
+|++++.+. +... +.++.++++|||++||+|++||++. .|++++|++||+.+++. +++..+.+
T Consensus 97 ~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dls~~lG~~~~~~~~~~~~a~~ 174 (221)
T PF03328_consen 97 EDARQAVAA--LRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADLSASLGIPGQPDHPEVLEARS 174 (221)
T ss_dssp HHHHHHHHH--HSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTTTTTSTTSHHHHHHHH
T ss_pred HHHHHHHHH--HhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHHHhhhccCCCCcchHHHHHHH
Confidence 356666665 4322 2478999999999999999999966 69999999999888775 67889999
Q ss_pred HHHHHHHHcCCCEEE
Q psy259 170 QMIAKCNKVGKPVIC 184 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ 184 (398)
+++..|+++|||++-
T Consensus 175 ~v~~aa~a~g~~~i~ 189 (221)
T PF03328_consen 175 KVVLAARAAGKPAID 189 (221)
T ss_dssp HHHHHHHHTTEEEEE
T ss_pred HHHHHHHHcCCCeEE
Confidence 999999999996653
No 27
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=98.44 E-value=1e-06 Score=97.84 Aligned_cols=119 Identities=19% Similarity=0.157 Sum_probs=90.2
Q ss_pred HHHHHHHHhhchhc-----CCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCC-CCC---------------hhhH
Q psy259 106 NVRLIEKLMATGEQ-----GKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGI-EIP---------------PWKV 164 (398)
Q Consensus 106 dV~~ir~~~~l~~~-----~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~-e~~---------------~~~v 164 (398)
+++++++. +... +.+++++++||+++|+.|+|+|++++|+++||+.||+. .++ .+.|
T Consensus 643 E~~~~~~~--~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV 720 (782)
T TIGR01418 643 EGKRALEI--MAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAV 720 (782)
T ss_pred HHHHHHHH--HHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCccCCchhhcccCCCCCHHH
Confidence 55555555 4332 23489999999999999999999999999999999996 322 3789
Q ss_pred HHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHH
Q psy259 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 244 (398)
Q Consensus 165 ~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE 244 (398)
..+.++++++|+++|||+.++.+|-. ..| ..+.-.+..|+|.+..+.+ .+..+.+.++.+|
T Consensus 721 ~~~i~~vi~~a~~~g~~vgicge~~~-----~~p-----~~~~~l~~~G~~~ls~~~d---------~~~~~k~~i~~~e 781 (782)
T TIGR01418 721 LRLIEMAIKAAKEHGKKVGICGQAPS-----DYP-----EVVEFLVEEGIDSISLNPD---------AVLRTRLQVAEVE 781 (782)
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCCCC-----CCH-----HHHHHHHHcCCCEEEECcc---------hHHHHHHHHHHhc
Confidence 99999999999999999998654321 012 2346777889999999865 4555666666666
Q ss_pred h
Q psy259 245 A 245 (398)
Q Consensus 245 ~ 245 (398)
+
T Consensus 782 ~ 782 (782)
T TIGR01418 782 K 782 (782)
T ss_pred C
Confidence 3
No 28
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=98.14 E-value=4.6e-06 Score=89.78 Aligned_cols=90 Identities=18% Similarity=0.072 Sum_probs=74.2
Q ss_pred CCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCC----------------ChhhHHHHHHHHHHHHHHcCCCEE
Q psy259 120 GKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEI----------------PPWKVFLAQKQMIAKCNKVGKPVI 183 (398)
Q Consensus 120 ~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~----------------~~~~v~~~qk~ii~~c~~~gkpvi 183 (398)
+.++.+.++||++.|+.|+|+|++.+|++.||+.||+.-+ -.+.|..+.+++++.|+++||||.
T Consensus 421 ~~~~~~g~mIE~p~a~~~~d~i~~~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~ 500 (575)
T PRK11177 421 DESIEIGVMVETPAAAVIARHLAKEVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTG 500 (575)
T ss_pred CCCcEEEEEEeCHHHHHhHHHHHhhCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEE
Confidence 4578999999999999999999999999999999999822 138899999999999999999999
Q ss_pred EeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 184 CATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 184 ~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
++.+|=- .|..+ .--+..|.|-+=.|
T Consensus 501 vCGe~A~------dp~~~-----~lLlglGi~~lSm~ 526 (575)
T PRK11177 501 MCGELAG------DERAT-----LLLLGMGLDEFSMS 526 (575)
T ss_pred EeCCCCC------CHHHH-----HHHHHCCCCeEEEC
Confidence 9988632 23322 44566788876665
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=98.06 E-value=7.9e-06 Score=87.84 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=82.2
Q ss_pred CCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCC-----C-----CC------hhhHHHHHHHHHHHHHHcCCCEE
Q psy259 120 GKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGI-----E-----IP------PWKVFLAQKQMIAKCNKVGKPVI 183 (398)
Q Consensus 120 ~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~-----e-----~~------~~~v~~~qk~ii~~c~~~gkpvi 183 (398)
+.++.+.++||++.|+.|+|+|++.+|+++||..||+. + ++ .+.|..+.++++++|+++||||.
T Consensus 420 ~~~~~vg~mIEtpaav~~~d~ia~~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~ 499 (565)
T TIGR01417 420 DENIEVGVMIEIPSAALIADHLAKEVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVG 499 (565)
T ss_pred ccCcEEEEEEcCHHHHHhHHHHHhhCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEE
Confidence 45789999999999999999999999999999999987 2 33 38889999999999999999999
Q ss_pred EeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHH
Q psy259 184 CATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 184 ~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~a 243 (398)
++..|- ..| ..+.-.+..|++.+..+. .++..+++.++..
T Consensus 500 vCGe~a------~~p-----~~~~~l~~~G~~~lsv~~---------~~i~~~k~~i~~~ 539 (565)
T TIGR01417 500 MCGEMA------GDE-----RAIPLLLGLGLRELSMSA---------SSILRIKMIIRKL 539 (565)
T ss_pred EeCCcC------CCH-----HHHHHHHHCCCCEEEECh---------HhHHHHHHHHHhc
Confidence 754432 122 255788889999998862 3455555555543
No 30
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=97.83 E-value=2.6e-05 Score=77.15 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=69.6
Q ss_pred CCcccEEEeecChHHHhcHHHHHHh---cCeeEEcCCCCCCCCCh------hhHHHHHHHHHHHHHHcCCCEEEeehhhH
Q psy259 120 GKHIKIIAKIENHQGVKNLDEIIAE---ADGIMVARGDLGIEIPP------WKVFLAQKQMIAKCNKVGKPVICATQMLE 190 (398)
Q Consensus 120 ~~~~~iiaKIE~~~~v~n~deIl~~---sDgimvaRgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~ATQmLe 190 (398)
..++.+++.|||++|+.|+++|+.. .||+++|..||..+++. +.+..+..+++..|+.+|+|+|
T Consensus 118 ~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~i------- 190 (288)
T TIGR01588 118 VGSTKLMAAIESALGVVNAVEIARASKRLMGIALGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAF------- 190 (288)
T ss_pred CCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEeCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcc-------
Confidence 4578999999999999999999955 67999999999999875 3577888899999999999986
Q ss_pred HhhcCCCCCch--hh--hhHHHHHHhCCcEEEe
Q psy259 191 SMIKKPRATRA--EI--SDVANAVLDGADCVML 219 (398)
Q Consensus 191 SMi~~~~Ptra--Ev--sDVanav~dG~D~vmL 219 (398)
..+.+... |. .++.++...|.++=+.
T Consensus 191 ---d~v~~~~~d~~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 191 ---DTVYSDVNNEEGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred ---cCCccCcCCHHHHHHHHHHHHHcCCCceec
Confidence 22222211 11 3556677788877555
No 31
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=96.70 E-value=0.0042 Score=61.95 Aligned_cols=103 Identities=22% Similarity=0.197 Sum_probs=75.8
Q ss_pred HHHHHHHHhhchhc-----------CCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCC------------CC--C-
Q psy259 106 NVRLIEKLMATGEQ-----------GKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLG------------IE--I- 159 (398)
Q Consensus 106 dV~~ir~~~~l~~~-----------~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg------------~e--~- 159 (398)
++.++|++ +.+. ..++++=++||+|.++--+|++++.+|.+=||=.||. +. +
T Consensus 150 E~~~~~~~--l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~~DF~SIGtNDLtQy~la~DR~n~~v~~~~d 227 (293)
T PF02896_consen 150 EVREAKEI--LEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKEVDFFSIGTNDLTQYTLAADRDNARVAYLYD 227 (293)
T ss_dssp HHHHHHHH--HHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTTSSEEEEEHHHHHHHHHTS-TTCCTCGGGS-
T ss_pred HHHHHHHH--HHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHHCCEEEEChhHHHHHHhhcCCCCcchhhhcC
Confidence 66666666 4332 3578999999999999999999999999999766662 11 1
Q ss_pred -ChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 160 -PPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 160 -~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
-.+-|....++++++|+++||||.++.+|-- .|..+ ---+..|.|.+-.+.
T Consensus 228 ~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~------~p~~~-----~~Ll~lGi~~lSv~p 279 (293)
T PF02896_consen 228 PLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS------DPEAI-----PLLLGLGIRSLSVSP 279 (293)
T ss_dssp TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG------SHHHH-----HHHHHHT-SEEEE-G
T ss_pred cchHHHHHHHHHHHHHHhhcCcEEEEecCCCC------CHHHH-----HHHHHcCCCEEEECH
Confidence 1377889999999999999999999998754 23333 567788999988863
No 32
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.38 E-value=0.031 Score=57.21 Aligned_cols=130 Identities=22% Similarity=0.341 Sum_probs=84.1
Q ss_pred eeEEEeCCCCCCHHHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEE-ee
Q psy259 53 GIICTIGPASVAVDMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIA-KI 129 (398)
Q Consensus 53 ~Iictigp~~~~~e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iia-KI 129 (398)
.+-..+||.....|..++|+++|.++-- -+|+ ..-..++-|+++|+. . .++.||+ -|
T Consensus 98 ~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g--------------~s~~~~~~ik~ik~~--~----~~~~viaGNV 157 (352)
T PF00478_consen 98 LVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHG--------------HSEHVIDMIKKIKKK--F----PDVPVIAGNV 157 (352)
T ss_dssp CEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SST--------------TSHHHHHHHHHHHHH--S----TTSEEEEEEE
T ss_pred eEEEEecCCHHHHHHHHHHHHcCCCEEEccccCc--------------cHHHHHHHHHHHHHh--C----CCceEEeccc
Confidence 3556689988899999999999966522 2332 111123456666665 3 3677777 99
Q ss_pred cChHHHhcHHHHHHh-cCeeEEcCCC---------CCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCC
Q psy259 130 ENHQGVKNLDEIIAE-ADGIMVARGD---------LGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRAT 199 (398)
Q Consensus 130 E~~~~v~n~deIl~~-sDgimvaRgD---------Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Pt 199 (398)
-|.++.++| ++. +|+|.|+=|- +|+-.| -.-+.....+.|+++++|||- .-..-
T Consensus 158 ~T~e~a~~L---~~aGad~vkVGiGpGsiCtTr~v~GvG~P---Q~tAv~~~a~~a~~~~v~iIA---------DGGi~- 221 (352)
T PF00478_consen 158 VTYEGAKDL---IDAGADAVKVGIGPGSICTTREVTGVGVP---QLTAVYECAEAARDYGVPIIA---------DGGIR- 221 (352)
T ss_dssp -SHHHHHHH---HHTT-SEEEESSSSSTTBHHHHHHSBSCT---HHHHHHHHHHHHHCTTSEEEE---------ESS-S-
T ss_pred CCHHHHHHH---HHcCCCEEEEeccCCcccccccccccCCc---HHHHHHHHHHHhhhccCceee---------cCCcC-
Confidence 999998875 344 9999999663 223333 223445566777788999996 22222
Q ss_pred chhhhhHHHHHHhCCcEEEec
Q psy259 200 RAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 200 raEvsDVanav~dG~D~vmLS 220 (398)
-..||+.|+..|||+|||.
T Consensus 222 --~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 222 --TSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp --SHHHHHHHHHTT-SEEEES
T ss_pred --cccceeeeeeecccceeec
Confidence 2479999999999999994
No 33
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.99 E-value=0.11 Score=52.78 Aligned_cols=133 Identities=20% Similarity=0.166 Sum_probs=85.2
Q ss_pred eEEEeCCCCCCHHHHHHHHHhcc--cccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEe-
Q psy259 54 IICTIGPASVAVDMLEKIIETES--NSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAK- 128 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~Gm--nvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaK- 128 (398)
+...+|-...+.|.+++|+++|. ++-- -+|+ .....+|+|+.+|+. . .+..||+-
T Consensus 98 ~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhG--------------hs~~~i~~ik~ir~~--~----p~~~viaGN 157 (343)
T TIGR01305 98 VAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANG--------------YSEHFVEFVKLVREA--F----PEHTIMAGN 157 (343)
T ss_pred EEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCC--------------cHHHHHHHHHHHHhh--C----CCCeEEEec
Confidence 34478999999999999999972 2210 2222 233346688888887 4 35778887
Q ss_pred ecChHHHhcHHHHHHhcCeeEEcCCCCCCCCCh--hhHHHHHH----HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchh
Q psy259 129 IENHQGVKNLDEIIAEADGIMVARGDLGIEIPP--WKVFLAQK----QMIAKCNKVGKPVICATQMLESMIKKPRATRAE 202 (398)
Q Consensus 129 IE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~--~~v~~~qk----~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraE 202 (398)
|-++++..++-+ .=+|+|.|+=|-=++.... ..+...|- .+.+.++..++|||. ......
T Consensus 158 V~T~e~a~~Li~--aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIa---------DGGIr~--- 223 (343)
T TIGR01305 158 VVTGEMVEELIL--SGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIIS---------DGGCTC--- 223 (343)
T ss_pred ccCHHHHHHHHH--cCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEE---------cCCcCc---
Confidence 999998875432 3499999883322233222 22222233 344444556788986 222222
Q ss_pred hhhHHHHHHhCCcEEEec
Q psy259 203 ISDVANAVLDGADCVMLS 220 (398)
Q Consensus 203 vsDVanav~dG~D~vmLS 220 (398)
-.||+.|+..|||+||+.
T Consensus 224 ~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 224 PGDVAKAFGAGADFVMLG 241 (343)
T ss_pred hhHHHHHHHcCCCEEEEC
Confidence 379999999999999996
No 34
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=95.94 E-value=0.011 Score=63.21 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=75.6
Q ss_pred HHHHHHHHhhchhc----C---CcccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCCCCCCCh-------------
Q psy259 106 NVRLIEKLMATGEQ----G---KHIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDLGIEIPP------------- 161 (398)
Q Consensus 106 dV~~ir~~~~l~~~----~---~~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDLg~e~~~------------- 161 (398)
|+..+.++ +... | ..+++++.|||..|+.|++||+.. +.|+..||.|+..++..
T Consensus 198 Ev~~~~~~--~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~~~~~~~~~pd~ 275 (511)
T cd00480 198 EARLWNDV--FSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTFRNHPDFVLPDR 275 (511)
T ss_pred HHHHHHHH--HHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccccccCccccCCcc
Confidence 66666666 4221 1 469999999999999999999987 45999999999988732
Q ss_pred -------hhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcC----CCCCc-----hh-hhhHHHHHHhCCcEEEe
Q psy259 162 -------WKVFLAQKQMIAKCNKVGKPVICATQMLESMIKK----PRATR-----AE-ISDVANAVLDGADCVML 219 (398)
Q Consensus 162 -------~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~----~~Ptr-----aE-vsDVanav~dG~D~vmL 219 (398)
+-+...++.++..|+++|.+.| +.|--. ..|.. +- ..|...+..+|.|+-+.
T Consensus 276 ~~~~m~~~~l~ay~~~lv~aa~a~G~~AI------dg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkwv 344 (511)
T cd00480 276 AKVTMTSPFMRAYEKLLVKTCHRRGAHAM------GGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTWV 344 (511)
T ss_pred cccccccHHHHHHHHHHHHHHHHcCCCcc------ccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCcccc
Confidence 1255568889999999999874 223111 11111 11 15778889999999776
No 35
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=95.59 E-value=0.033 Score=59.46 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=76.3
Q ss_pred HHHHHHHHhh-----chhcCCcccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCCCCCCC----h-----------
Q psy259 106 NVRLIEKLMA-----TGEQGKHIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDLGIEIP----P----------- 161 (398)
Q Consensus 106 dV~~ir~~~~-----l~~~~~~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDLg~e~~----~----------- 161 (398)
|+..+.+++. ++-....+++.+.|||..|+-|++||+.+ +.|+..||.|+..++. .
T Consensus 198 Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~ 277 (511)
T cd00727 198 EARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQ 277 (511)
T ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHHHHHHHHhhccCCCccCCcccc
Confidence 6666666621 11122469999999999999999999976 6899999999988771 1
Q ss_pred -----hhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCc-hh----------hhhHHHHHHhCCcEEEe
Q psy259 162 -----WKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATR-AE----------ISDVANAVLDGADCVML 219 (398)
Q Consensus 162 -----~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptr-aE----------vsDVanav~dG~D~vmL 219 (398)
+-+...++.++..|+++|...|- -|- .-.|.+ .+ ..|-..+..+|.|+-++
T Consensus 278 v~m~~~~l~Ay~~llV~aa~a~G~~AId------Gm~-a~ip~kdd~~~n~~~l~~~r~dk~~~~~lGfDGkwv 344 (511)
T cd00727 278 VTMTVPFMRAYSELLIKTCHRRGAHAMG------GMA-AQIPIKDDPAANEAALAKVRADKLREATAGHDGTWV 344 (511)
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCccc------chh-hcCCcccchhhHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 22334477799999999999774 231 122322 11 35778889999999887
No 36
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=94.95 E-value=0.044 Score=58.50 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=74.8
Q ss_pred HHHHHHHHhh-----chhcCCcccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCCCCCCC-----------h----
Q psy259 106 NVRLIEKLMA-----TGEQGKHIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDLGIEIP-----------P---- 161 (398)
Q Consensus 106 dV~~ir~~~~-----l~~~~~~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDLg~e~~-----------~---- 161 (398)
|+..+.+++. ++-....+++.+.|||+.|+-|++||+.+ +.|+..||.|+.-++. +
T Consensus 199 Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~ 278 (511)
T TIGR01344 199 EARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDA 278 (511)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccc
Confidence 6666656521 11122468999999999999999999976 6899999999983322 1
Q ss_pred -----hhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCc--hh---------hhhHHHHHHhCCcEEEe
Q psy259 162 -----WKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATR--AE---------ISDVANAVLDGADCVML 219 (398)
Q Consensus 162 -----~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptr--aE---------vsDVanav~dG~D~vmL 219 (398)
+-+...++.++..|+++|+.+|= -| ..-.|-+ .| ..|-..+..+|.|+-++
T Consensus 279 ~~m~~~~l~Ay~~llV~aara~G~~AId------Gm-~a~ip~k~D~~~n~~al~~vr~dk~re~~lGfDGkwv 345 (511)
T TIGR01344 279 VTMTKPFLNAYSKLLIQTCHRRGAHAMG------GM-AAFIPIKGDPAANEAAMNKVRADKIREAKNGHDGTWV 345 (511)
T ss_pred cccccHHHHHHHHHHHHHHHHcCCCccC------ch-hccCCcccChhhHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 33445588888999999998874 22 1112332 11 35777888999999777
No 37
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.95 E-value=0.14 Score=52.76 Aligned_cols=93 Identities=23% Similarity=0.189 Sum_probs=56.0
Q ss_pred HHHHHHhhchhcCCcccEEE-eecChHHHhcHHHHHHhcCeeEEcCCCCCCCCCh--h--hHHHHHHHHHHHH----HHc
Q psy259 108 RLIEKLMATGEQGKHIKIIA-KIENHQGVKNLDEIIAEADGIMVARGDLGIEIPP--W--KVFLAQKQMIAKC----NKV 178 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iia-KIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~--~--~v~~~qk~ii~~c----~~~ 178 (398)
..++++ +.+. +++||+ .|-+.+....+-+ .=+|+|||+||-=+..... . .+| |-..+..| +++
T Consensus 177 ~~i~~~--ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~Gs~~~t~~~~g~g~p--~~~ai~~~~~a~~~~ 248 (368)
T PRK08649 177 LNLKEF--IYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGPGAACTSRGVLGIGVP--MATAIADVAAARRDY 248 (368)
T ss_pred HHHHHH--HHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCcCCCCcccCCCCcC--HHHHHHHHHHHHHHh
Confidence 444555 4432 588888 8888777655543 3499999999852111110 0 112 22222222 222
Q ss_pred -------CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 179 -------GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 179 -------gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
+.|||.+--+-. -.|++.|+..|||+||+.
T Consensus 249 l~~~~~~~vpVIAdGGI~~------------~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 249 LDETGGRYVHVIADGGIGT------------SGDIAKAIACGADAVMLG 285 (368)
T ss_pred hhhhcCCCCeEEEeCCCCC------------HHHHHHHHHcCCCeeccc
Confidence 689998544322 269999999999999994
No 38
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=94.81 E-value=0.035 Score=55.21 Aligned_cols=106 Identities=24% Similarity=0.282 Sum_probs=75.6
Q ss_pred HHHHHHHHhhchhcCCcc---cEEEeecChHHHhcHHHHHHhc---CeeEEcCCCCCCCCCh-------hhHHHHHHHHH
Q psy259 106 NVRLIEKLMATGEQGKHI---KIIAKIENHQGVKNLDEIIAEA---DGIMVARGDLGIEIPP-------WKVFLAQKQMI 172 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~---~iiaKIE~~~~v~n~deIl~~s---DgimvaRgDLg~e~~~-------~~v~~~qk~ii 172 (398)
||.++-.. +.+..... .+++.|||++|+.|..||.+.+ .|+.+|-.||..+++. ..+..+-.+|+
T Consensus 94 ~v~~~~~~--l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~Dl~~~~g~~~~~~~~~~l~~ar~~iv 171 (283)
T COG2301 94 DVEELDQL--LREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGANDLAADLGARRSPDGTDPLRYARAMIV 171 (283)
T ss_pred HHHHHHHH--hhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHHHHHHHhCCCCCCCCcchHHHHHHHHH
Confidence 55555555 44333222 3999999999999999999986 8999999998877765 25667888999
Q ss_pred HHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEe
Q psy259 173 AKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 173 ~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmL 219 (398)
..|+.+|++.+=. .-+=+++|--- ..+++++...|.|+-++
T Consensus 172 ~Aara~Gi~a~D~---V~~d~~d~~g~---~~e~~~a~~~Gf~GK~~ 212 (283)
T COG2301 172 LAARAAGLAAIDG---VYTDINDPEGF---AREAAQAAALGFDGKTC 212 (283)
T ss_pred HHHHHcCCCcccc---cccccCCHHHH---HHHHHHHHHcCCCcccc
Confidence 9999999998631 00001111111 25678899999998776
No 39
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.52 E-value=0.57 Score=50.25 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=82.3
Q ss_pred EeCCCCCCHHHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEe-ecChH
Q psy259 57 TIGPASVAVDMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAK-IENHQ 133 (398)
Q Consensus 57 tigp~~~~~e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaK-IE~~~ 133 (398)
.+|+.-...|..++|+++|.++-- .+|+ .+..-++.|+++|+. . .+..||++ |-|.+
T Consensus 242 avg~~~~~~~r~~~l~~ag~d~i~iD~~~g--------------~~~~~~~~i~~ik~~--~----p~~~vi~g~v~t~e 301 (505)
T PLN02274 242 AIGTRESDKERLEHLVKAGVDVVVLDSSQG--------------DSIYQLEMIKYIKKT--Y----PELDVIGGNVVTMY 301 (505)
T ss_pred EEcCCccHHHHHHHHHHcCCCEEEEeCCCC--------------CcHHHHHHHHHHHHh--C----CCCcEEEecCCCHH
Confidence 578877888999999999976632 2232 222224567777775 3 35788875 99988
Q ss_pred HHhcHHHHHHhcCeeEEc--CC-------CCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhh
Q psy259 134 GVKNLDEIIAEADGIMVA--RG-------DLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEIS 204 (398)
Q Consensus 134 ~v~n~deIl~~sDgimva--Rg-------DLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvs 204 (398)
.-.++.+ .=+|+|.|+ +| .-++-.|. + .+...+.+.+++.+.|||...- .-+ -.
T Consensus 302 ~a~~a~~--aGaD~i~vg~g~G~~~~t~~~~~~g~~~--~-~~i~~~~~~~~~~~vpVIadGG---------I~~---~~ 364 (505)
T PLN02274 302 QAQNLIQ--AGVDGLRVGMGSGSICTTQEVCAVGRGQ--A-TAVYKVASIAAQHGVPVIADGG---------ISN---SG 364 (505)
T ss_pred HHHHHHH--cCcCEEEECCCCCccccCccccccCCCc--c-cHHHHHHHHHHhcCCeEEEeCC---------CCC---HH
Confidence 7766554 239999986 44 11222222 1 1222345556678999997432 222 26
Q ss_pred hHHHHHHhCCcEEEec
Q psy259 205 DVANAVLDGADCVMLS 220 (398)
Q Consensus 205 DVanav~dG~D~vmLS 220 (398)
|++.|+..|||+||+.
T Consensus 365 di~kAla~GA~~V~vG 380 (505)
T PLN02274 365 HIVKALTLGASTVMMG 380 (505)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999995
No 40
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.46 E-value=0.37 Score=51.49 Aligned_cols=127 Identities=22% Similarity=0.325 Sum_probs=81.7
Q ss_pred EeCCCCCCHHHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEE-eecChH
Q psy259 57 TIGPASVAVDMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIA-KIENHQ 133 (398)
Q Consensus 57 tigp~~~~~e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iia-KIE~~~ 133 (398)
.+|..-...+.++.|+++|.++-. .+|+ .....++.|+++|+. . .++.|++ -+-|.+
T Consensus 235 avg~~~~~~~~~~~l~~ag~d~i~id~a~G--------------~s~~~~~~i~~ik~~--~----~~~~v~aG~V~t~~ 294 (495)
T PTZ00314 235 AISTRPEDIERAAALIEAGVDVLVVDSSQG--------------NSIYQIDMIKKLKSN--Y----PHVDIIAGNVVTAD 294 (495)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEecCCC--------------CchHHHHHHHHHHhh--C----CCceEEECCcCCHH
Confidence 677666678999999999977644 3333 111124456666665 3 2578888 566655
Q ss_pred HHhcHHHHHHh-cCeeEEc--CCC-------CCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhh
Q psy259 134 GVKNLDEIIAE-ADGIMVA--RGD-------LGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEI 203 (398)
Q Consensus 134 ~v~n~deIl~~-sDgimva--RgD-------Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEv 203 (398)
... ..+++ +|+|.|+ +|- +++-+| . ..+-..+.+.|++.|.|+|..-- .-| -
T Consensus 295 ~a~---~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p--~-~~ai~~~~~~~~~~~v~vIadGG---------i~~---~ 356 (495)
T PTZ00314 295 QAK---NLIDAGADGLRIGMGSGSICITQEVCAVGRP--Q-ASAVYHVARYARERGVPCIADGG---------IKN---S 356 (495)
T ss_pred HHH---HHHHcCCCEEEECCcCCcccccchhccCCCC--h-HHHHHHHHHHHhhcCCeEEecCC---------CCC---H
Confidence 544 34455 9999974 552 222223 2 13445667788899999996322 222 2
Q ss_pred hhHHHHHHhCCcEEEecC
Q psy259 204 SDVANAVLDGADCVMLSG 221 (398)
Q Consensus 204 sDVanav~dG~D~vmLS~ 221 (398)
.|++.|+..|||+||+..
T Consensus 357 ~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 357 GDICKALALGADCVMLGS 374 (495)
T ss_pred HHHHHHHHcCCCEEEECc
Confidence 699999999999999953
No 41
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.13 E-value=0.78 Score=49.19 Aligned_cols=132 Identities=20% Similarity=0.215 Sum_probs=78.9
Q ss_pred eEEEeCCCCCCHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEE-eecCh
Q psy259 54 IICTIGPASVAVDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIA-KIENH 132 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~Gmnvr~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iia-KIE~~ 132 (398)
+.+.+|+. ...+..+.|+++|.++-..... || .+...++.|+.+|+. . +.++.|++ -|.++
T Consensus 234 V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a--~g----------~~~~~~~~i~~ir~~--~---~~~~~V~aGnV~t~ 295 (502)
T PRK07107 234 VGAGINTR-DYAERVPALVEAGADVLCIDSS--EG----------YSEWQKRTLDWIREK--Y---GDSVKVGAGNVVDR 295 (502)
T ss_pred eeeccChh-hHHHHHHHHHHhCCCeEeecCc--cc----------ccHHHHHHHHHHHHh--C---CCCceEEeccccCH
Confidence 34567774 5678999999999766442110 01 112225667777776 4 23466777 78888
Q ss_pred HHHhcHHHHHHhcCeeEEcCCC---------CCCCCChhhHHHHHHHHHHHHH----HcC--CCEEEeehhhHHhhcCCC
Q psy259 133 QGVKNLDEIIAEADGIMVARGD---------LGIEIPPWKVFLAQKQMIAKCN----KVG--KPVICATQMLESMIKKPR 197 (398)
Q Consensus 133 ~~v~n~deIl~~sDgimvaRgD---------Lg~e~~~~~v~~~qk~ii~~c~----~~g--kpvi~ATQmLeSMi~~~~ 197 (398)
++.+.+-+ .=+|+|.|+.|- +|+-.|. + .+-..+.+.++ +.| +|||. ....
T Consensus 296 e~a~~li~--aGAd~I~vg~g~Gs~c~tr~~~~~g~~~--~-~ai~~~~~a~~~~~~~~g~~~~via---------dgGi 361 (502)
T PRK07107 296 EGFRYLAE--AGADFVKVGIGGGSICITREQKGIGRGQ--A-TALIEVAKARDEYFEETGVYIPICS---------DGGI 361 (502)
T ss_pred HHHHHHHH--cCCCEEEECCCCCcCcccccccCCCccH--H-HHHHHHHHHHHHHHhhcCCcceEEE---------cCCC
Confidence 87765532 238999996552 3333331 1 11112222222 236 89886 3333
Q ss_pred CCchhhhhHHHHHHhCCcEEEec
Q psy259 198 ATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 198 PtraEvsDVanav~dG~D~vmLS 220 (398)
.+ ..||+.|+..|||+||+.
T Consensus 362 r~---~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 362 VY---DYHMTLALAMGADFIMLG 381 (502)
T ss_pred Cc---hhHHHHHHHcCCCeeeeC
Confidence 22 379999999999999995
No 42
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.12 E-value=0.99 Score=47.54 Aligned_cols=130 Identities=22% Similarity=0.294 Sum_probs=84.3
Q ss_pred EEeCCCCCCHHHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEE-eecCh
Q psy259 56 CTIGPASVAVDMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIA-KIENH 132 (398)
Q Consensus 56 ctigp~~~~~e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iia-KIE~~ 132 (398)
+.+|..-.+.+..++|+++|.++-. .+|+ ...-+.+.|+++|+. . .++.|++ -+-+.
T Consensus 217 aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g--------------~~~~~~~~i~~i~~~--~----~~~~vi~G~v~t~ 276 (450)
T TIGR01302 217 AAVGTREFDKERAEALVKAGVDVIVIDSSHG--------------HSIYVIDSIKEIKKT--Y----PDLDIIAGNVATA 276 (450)
T ss_pred EEecCchhHHHHHHHHHHhCCCEEEEECCCC--------------cHhHHHHHHHHHHHh--C----CCCCEEEEeCCCH
Confidence 3566666778899999999977744 4443 122345567777765 3 2577777 67777
Q ss_pred HHHhcHHHHHHhcCeeEEc--CCCCCCC-----CChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhh
Q psy259 133 QGVKNLDEIIAEADGIMVA--RGDLGIE-----IPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISD 205 (398)
Q Consensus 133 ~~v~n~deIl~~sDgimva--RgDLg~e-----~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsD 205 (398)
++..++-+ .=+|+|-|+ +|--... ++.+.+ .+...+.+.|++.+.|+|.. -..-| -.|
T Consensus 277 ~~a~~l~~--aGad~i~vg~g~G~~~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpviad---------GGi~~---~~d 341 (450)
T TIGR01302 277 EQAKALID--AGADGLRVGIGPGSICTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIAD---------GGIRY---SGD 341 (450)
T ss_pred HHHHHHHH--hCCCEEEECCCCCcCCccceecCCCccHH-HHHHHHHHHHhhcCCeEEEe---------CCCCC---HHH
Confidence 76665543 238999866 5521111 222222 45556777788899999863 22333 359
Q ss_pred HHHHHHhCCcEEEec
Q psy259 206 VANAVLDGADCVMLS 220 (398)
Q Consensus 206 Vanav~dG~D~vmLS 220 (398)
|+.|+..|||+||+.
T Consensus 342 i~kAla~GA~~V~~G 356 (450)
T TIGR01302 342 IVKALAAGADAVMLG 356 (450)
T ss_pred HHHHHHcCCCEEEEC
Confidence 999999999999995
No 43
>PRK09255 malate synthase; Validated
Probab=93.96 E-value=0.13 Score=55.33 Aligned_cols=105 Identities=22% Similarity=0.216 Sum_probs=75.2
Q ss_pred HHHHHHHHhhchh-------cCCcccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCCCCC----CC--------h-
Q psy259 106 NVRLIEKLMATGE-------QGKHIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDLGIE----IP--------P- 161 (398)
Q Consensus 106 dV~~ir~~~~l~~-------~~~~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDLg~e----~~--------~- 161 (398)
|+..+.++ +.. ....+++.+.|||..|+-|++||+.+ +.|+..||.|+..+ +. -
T Consensus 219 Ev~~~~~v--f~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR 296 (531)
T PRK09255 219 EARLWNDV--FVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDR 296 (531)
T ss_pred HHHHHHHH--HHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcc
Confidence 66666666 431 12469999999999999999999976 68999999999854 11 1
Q ss_pred -------hhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCc----------hh-hhhHHHHHHhCCcEEEe
Q psy259 162 -------WKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATR----------AE-ISDVANAVLDGADCVML 219 (398)
Q Consensus 162 -------~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptr----------aE-vsDVanav~dG~D~vmL 219 (398)
+-+...++.++..|+++|...|- -| ..-.|.+ +- ..|-..+..+|.|+-++
T Consensus 297 ~~v~m~~~~l~Ay~~llV~aara~G~~AId------Gm-~a~ip~k~D~~~n~~a~~g~r~dk~r~~~lGfDGkwv 365 (531)
T PRK09255 297 AQVTMTKPFMRAYSRLLIKTCHKRGAHAMG------GM-AAFIPIKNDPEANEAALAKVRADKEREANDGHDGTWV 365 (531)
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCccC------ch-hhcCCcccChhhhHHHHHHHHHHHHHHHhCCCCccee
Confidence 33444588888999999998774 23 1123322 11 15778889999999887
No 44
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.88 E-value=0.76 Score=46.91 Aligned_cols=129 Identities=19% Similarity=0.139 Sum_probs=82.0
Q ss_pred EeCCCCCCHHHHHHHHHh--cccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEE-eecC
Q psy259 57 TIGPASVAVDMLEKIIET--ESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIA-KIEN 131 (398)
Q Consensus 57 tigp~~~~~e~l~~~i~~--Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iia-KIE~ 131 (398)
.+|-...+.|.+++|+++ |.++-- -+|+ .....++=|+++|+. + .++.||+ -+-|
T Consensus 102 avG~~~~d~er~~~L~~~~~g~D~iviD~AhG--------------hs~~~i~~ik~ik~~--~----P~~~vIaGNV~T 161 (346)
T PRK05096 102 STGTSDADFEKTKQILALSPALNFICIDVANG--------------YSEHFVQFVAKAREA--W----PDKTICAGNVVT 161 (346)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCEEEEECCCC--------------cHHHHHHHHHHHHHh--C----CCCcEEEecccC
Confidence 678888999999999996 543311 2332 122223346666665 3 3456666 8999
Q ss_pred hHHHhcHHHHHHhcCeeEEcCCCCCCCCCh-------hhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhh
Q psy259 132 HQGVKNLDEIIAEADGIMVARGDLGIEIPP-------WKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEIS 204 (398)
Q Consensus 132 ~~~v~n~deIl~~sDgimvaRgDLg~e~~~-------~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvs 204 (398)
+++.++|-+ +=+|+|-|+=|-=++-+-. +. ..+.....+.+++.|+|+|- .-...+ ..
T Consensus 162 ~e~a~~Li~--aGAD~vKVGIGpGSiCtTr~vtGvG~PQ-ltAV~~~a~~a~~~gvpiIA---------DGGi~~---sG 226 (346)
T PRK05096 162 GEMVEELIL--SGADIVKVGIGPGSVCTTRVKTGVGYPQ-LSAVIECADAAHGLGGQIVS---------DGGCTV---PG 226 (346)
T ss_pred HHHHHHHHH--cCCCEEEEcccCCccccCccccccChhH-HHHHHHHHHHHHHcCCCEEe---------cCCccc---cc
Confidence 998877532 3399998765522222221 21 23344556667788999995 222222 37
Q ss_pred hHHHHHHhCCcEEEec
Q psy259 205 DVANAVLDGADCVMLS 220 (398)
Q Consensus 205 DVanav~dG~D~vmLS 220 (398)
||+.|+..|||+|||.
T Consensus 227 DI~KAlaaGAd~VMlG 242 (346)
T PRK05096 227 DVAKAFGGGADFVMLG 242 (346)
T ss_pred HHHHHHHcCCCEEEeC
Confidence 9999999999999995
No 45
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=93.80 E-value=0.93 Score=45.97 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=80.6
Q ss_pred eEEEeCCCCCCHHHHHHHHHhcc--cc--cccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEe-
Q psy259 54 IICTIGPASVAVDMLEKIIETES--NS--DECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAK- 128 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~Gm--nv--r~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaK- 128 (398)
..+.+|-...+.|.+.+|+++|. ++ ...+|+ .+...++.|+++|+. . ..+.||++
T Consensus 85 v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg--------------~s~~~~~~i~~i~~~--~----p~~~vi~Gn 144 (321)
T TIGR01306 85 ASISVGVKACEYEFVTQLAEEALTPEYITIDIAHG--------------HSNSVINMIKHIKTH--L----PDSFVIAGN 144 (321)
T ss_pred EEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccC--------------chHHHHHHHHHHHHh--C----CCCEEEEec
Confidence 55667777777889999999993 22 114443 223334567777776 4 35668888
Q ss_pred ecChHHHhcHHHHHHhcCeeEEcCC--C-------CCCCCChhhHHHHHHHHHHHHH-HcCCCEEEeehhhHHhhcCCCC
Q psy259 129 IENHQGVKNLDEIIAEADGIMVARG--D-------LGIEIPPWKVFLAQKQMIAKCN-KVGKPVICATQMLESMIKKPRA 198 (398)
Q Consensus 129 IE~~~~v~n~deIl~~sDgimvaRg--D-------Lg~e~~~~~v~~~qk~ii~~c~-~~gkpvi~ATQmLeSMi~~~~P 198 (398)
+-+.+....+.+ .=+|+|.|+=| = .|+..| ..|-..+..|. ...+|||. .-..-
T Consensus 145 V~t~e~a~~l~~--aGad~I~V~~G~G~~~~tr~~~g~g~~-----~~~l~ai~ev~~a~~~pVIa---------dGGIr 208 (321)
T TIGR01306 145 VGTPEAVRELEN--AGADATKVGIGPGKVCITKIKTGFGTG-----GWQLAALRWCAKAARKPIIA---------DGGIR 208 (321)
T ss_pred CCCHHHHHHHHH--cCcCEEEECCCCCccccceeeeccCCC-----chHHHHHHHHHHhcCCeEEE---------ECCcC
Confidence 988877766543 23899998833 2 122222 12223344444 34678775 33333
Q ss_pred CchhhhhHHHHHHhCCcEEEec
Q psy259 199 TRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 199 traEvsDVanav~dG~D~vmLS 220 (398)
+ -.||+.|+..|||+||+.
T Consensus 209 ~---~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 209 T---HGDIAKSIRFGASMVMIG 227 (321)
T ss_pred c---HHHHHHHHHcCCCEEeec
Confidence 3 369999999999999996
No 46
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.60 E-value=0.6 Score=49.76 Aligned_cols=126 Identities=22% Similarity=0.258 Sum_probs=77.3
Q ss_pred eCCCCCCHHHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEE-eecChHH
Q psy259 58 IGPASVAVDMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIA-KIENHQG 134 (398)
Q Consensus 58 igp~~~~~e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iia-KIE~~~~ 134 (398)
+|..-...+.++.|+++|.++-- -+|+ .....++=|++||+. -.++.||+ -+-|.++
T Consensus 222 v~~~~~~~~~a~~Lv~aGvd~i~~D~a~~--------------~~~~~~~~i~~ik~~------~p~~~v~agnv~t~~~ 281 (479)
T PRK07807 222 VGINGDVAAKARALLEAGVDVLVVDTAHG--------------HQEKMLEALRAVRAL------DPGVPIVAGNVVTAEG 281 (479)
T ss_pred hccChhHHHHHHHHHHhCCCEEEEeccCC--------------ccHHHHHHHHHHHHH------CCCCeEEeeccCCHHH
Confidence 44444556777777777755411 2222 111112234555544 34689999 9999999
Q ss_pred HhcHHHHHHhcCeeEEcCCC---------CCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhh
Q psy259 135 VKNLDEIIAEADGIMVARGD---------LGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISD 205 (398)
Q Consensus 135 v~n~deIl~~sDgimvaRgD---------Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsD 205 (398)
..++.+ .=+|+|-||=|- -|+-. +. +.+-.++.+.|++.|+|||.. -...+. .|
T Consensus 282 a~~l~~--aGad~v~vgig~gsictt~~~~~~~~--p~-~~av~~~~~~~~~~~~~via~---------ggi~~~---~~ 344 (479)
T PRK07807 282 TRDLVE--AGADIVKVGVGPGAMCTTRMMTGVGR--PQ-FSAVLECAAAARELGAHVWAD---------GGVRHP---RD 344 (479)
T ss_pred HHHHHH--cCCCEEEECccCCcccccccccCCch--hH-HHHHHHHHHHHHhcCCcEEec---------CCCCCH---HH
Confidence 887765 338999855332 22222 21 233445555666779999973 333333 69
Q ss_pred HHHHHHhCCcEEEec
Q psy259 206 VANAVLDGADCVMLS 220 (398)
Q Consensus 206 Vanav~dG~D~vmLS 220 (398)
++.|+..|||+||+.
T Consensus 345 ~~~al~~ga~~v~~g 359 (479)
T PRK07807 345 VALALAAGASNVMIG 359 (479)
T ss_pred HHHHHHcCCCeeecc
Confidence 999999999999995
No 47
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.57 E-value=0.94 Score=45.77 Aligned_cols=129 Identities=24% Similarity=0.371 Sum_probs=73.1
Q ss_pred eEEEeCCCCCCHHHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEE-eec
Q psy259 54 IICTIGPASVAVDMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIA-KIE 130 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iia-KIE 130 (398)
+.+.+|+.....+.++.++++|..+-. ++++ .. --+.+-|+++|+. +.+++|++ .+.
T Consensus 85 v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G-------------~~-~~~~~~i~~ik~~------~p~v~Vi~G~v~ 144 (325)
T cd00381 85 VGAAVGTREDDKERAEALVEAGVDVIVIDSAHG-------------HS-VYVIEMIKFIKKK------YPNVDVIAGNVV 144 (325)
T ss_pred EEEecCCChhHHHHHHHHHhcCCCEEEEECCCC-------------Cc-HHHHHHHHHHHHH------CCCceEEECCCC
Confidence 334455544556667777777744322 2222 11 1223334555554 23577876 666
Q ss_pred ChHHHhcHHHHHHh-cCeeEEc--CC-------CCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCc
Q psy259 131 NHQGVKNLDEIIAE-ADGIMVA--RG-------DLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATR 200 (398)
Q Consensus 131 ~~~~v~n~deIl~~-sDgimva--Rg-------DLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptr 200 (398)
+.+....+ ++. +|+|.|+ +| ..++..| .+ .+-..+.+.|+..+.|||.+ -...+
T Consensus 145 t~~~A~~l---~~aGaD~I~vg~g~G~~~~t~~~~g~g~p--~~-~~i~~v~~~~~~~~vpVIA~---------GGI~~- 208 (325)
T cd00381 145 TAEAARDL---IDAGADGVKVGIGPGSICTTRIVTGVGVP--QA-TAVADVAAAARDYGVPVIAD---------GGIRT- 208 (325)
T ss_pred CHHHHHHH---HhcCCCEEEECCCCCcCcccceeCCCCCC--HH-HHHHHHHHHHhhcCCcEEec---------CCCCC-
Confidence 66555443 445 9999984 22 1222222 11 23345556677779999953 22222
Q ss_pred hhhhhHHHHHHhCCcEEEec
Q psy259 201 AEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 201 aEvsDVanav~dG~D~vmLS 220 (398)
-.|++.|+..|||+||+.
T Consensus 209 --~~di~kAla~GA~~VmiG 226 (325)
T cd00381 209 --SGDIVKALAAGADAVMLG 226 (325)
T ss_pred --HHHHHHHHHcCCCEEEec
Confidence 369999999999999993
No 48
>PLN02626 malate synthase
Probab=93.11 E-value=0.3 Score=52.52 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=67.7
Q ss_pred CCcccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCC----CCC----------------CChhhHHHHHHHHHHHH
Q psy259 120 GKHIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDL----GIE----------------IPPWKVFLAQKQMIAKC 175 (398)
Q Consensus 120 ~~~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDL----g~e----------------~~~~~v~~~qk~ii~~c 175 (398)
...|++.+.|||..|+-|++||+.+ +-|+..||-|+ .-. +..+-+....+.++..|
T Consensus 244 ~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~~~~~~vlpDr~~vtM~~~f~rAY~~llV~ac 323 (551)
T PLN02626 244 RGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFRAHPDRLLPDRVQVGMTQHFMKSYVDLLIKTC 323 (551)
T ss_pred CCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhccCCCCCCCCccccchhhHHHHHHHHHHHHHH
Confidence 3579999999999999999999976 68999999999 111 11122234556999999
Q ss_pred HHcCCCEEEeehhhHHh--hcCCCCCchhh----hhHHHHHHhCCcEEEec
Q psy259 176 NKVGKPVICATQMLESM--IKKPRATRAEI----SDVANAVLDGADCVMLS 220 (398)
Q Consensus 176 ~~~gkpvi~ATQmLeSM--i~~~~PtraEv----sDVanav~dG~D~vmLS 220 (398)
+++|...|-. |---+ -..|.+..+.. .|-.....+|.|+-+.-
T Consensus 324 h~rG~~AIgG--M~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~wVi 372 (551)
T PLN02626 324 HKRGVHAMGG--MAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTWAA 372 (551)
T ss_pred HhcCCccccc--ccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCceeec
Confidence 9999987641 11111 01122221111 57888999999998883
No 49
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=92.69 E-value=0.17 Score=56.70 Aligned_cols=103 Identities=18% Similarity=0.085 Sum_probs=76.5
Q ss_pred cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCC----------------CChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIE----------------IPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e----------------~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
++++=++||+|.++--+|++++.+|.+=||=.||.-= --.+-|-...+++++.|+++||||.++
T Consensus 589 ~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vC 668 (748)
T PRK11061 589 KPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLC 668 (748)
T ss_pred CceEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEc
Confidence 3678899999999999999999999999999998421 113778899999999999999999999
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHH
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 244 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE 244 (398)
-+|=- .|..+ .--+..|.|-+=.+ -.++--++++++...
T Consensus 669 Ge~a~------dp~~~-----~~L~glGi~~lS~~---------~~~i~~~k~~i~~~~ 707 (748)
T PRK11061 669 GEMAG------DPMGA-----LLLIGLGYRHLSMN---------GRSVARVKYLLRHID 707 (748)
T ss_pred CCccc------CHHHH-----HHHHHCCCcEEccC---------hHHHHHHHHHHHhCC
Confidence 88632 24433 34566777775443 234555555555443
No 50
>PRK08227 autoinducer 2 aldolase; Validated
Probab=91.84 E-value=2.4 Score=41.92 Aligned_cols=148 Identities=20% Similarity=0.162 Sum_probs=79.3
Q ss_pred HHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEE
Q psy259 138 LDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCV 217 (398)
Q Consensus 138 ~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~v 217 (398)
++.+..-.|++++-+|=+.-..+ ...++|.|+----=.++. .+.+...=+++|-.|+..|+|||
T Consensus 48 ~~~i~~~~da~~~~~G~~~~~~~---------------~~~~~~lil~ls~~t~~~-~~~~~~~l~~sVeeAvrlGAdAV 111 (264)
T PRK08227 48 IAPLFPYADVLMCTRGILRSVVP---------------PATNKPVVLRASGGNSIL-KELSNEAVAVDMEDAVRLNACAV 111 (264)
T ss_pred HHHHhhcCCEEEeChhHHHhccc---------------ccCCCcEEEEEcCCCCCC-CCCCcccceecHHHHHHCCCCEE
Confidence 44455458999988773321100 224577776422111222 22345666799999999999999
Q ss_pred EecCccCCCC-ChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCchHH
Q psy259 218 MLSGETAKGD-YPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSA 296 (398)
Q Consensus 218 mLS~ETA~G~-yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA 296 (398)
..+- -.|. +=-+.++.+.++++++++.= ..+.-.. ...+...+..+ +...|++++.+++|+.| =...+|.+-
T Consensus 112 ~~~v--~~Gs~~E~~~l~~l~~v~~ea~~~G--~Plla~~-prG~~~~~~~~-~ia~aaRiaaELGADiV-K~~y~~~~f 184 (264)
T PRK08227 112 AAQV--FIGSEYEHQSIKNIIQLVDAGLRYG--MPVMAVT-AVGKDMVRDAR-YFSLATRIAAEMGAQII-KTYYVEEGF 184 (264)
T ss_pred EEEE--ecCCHHHHHHHHHHHHHHHHHHHhC--CcEEEEe-cCCCCcCchHH-HHHHHHHHHHHHcCCEE-ecCCCHHHH
Confidence 8852 3332 22456666777777777631 1110000 00111123344 55566788889999944 334456443
Q ss_pred HHHHhhCCCCCEE
Q psy259 297 RLISKYRPRCPII 309 (398)
Q Consensus 297 ~~iSkyRP~~PII 309 (398)
..+-.-.| +||+
T Consensus 185 ~~vv~a~~-vPVv 196 (264)
T PRK08227 185 ERITAGCP-VPIV 196 (264)
T ss_pred HHHHHcCC-CcEE
Confidence 33333443 4655
No 51
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=91.49 E-value=1.8 Score=42.30 Aligned_cols=90 Identities=30% Similarity=0.353 Sum_probs=57.5
Q ss_pred hhHHHHHHhCCcEEEecCccCCCCCh------HHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHH
Q psy259 204 SDVANAVLDGADCVMLSGETAKGDYP------VECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEA 277 (398)
Q Consensus 204 sDVanav~dG~D~vmLS~ETA~G~yP------~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~ 277 (398)
.|-..--.-|+|+||+.. .|+.| -|+|..|..|+++.-..+.- |.-.+...--+.+|..+
T Consensus 38 ~dA~~leegG~DavivEN---~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~i-----------PvGvNVLrNd~vaA~~I 103 (263)
T COG0434 38 RDAAALEEGGVDAVIVEN---YGDAPFLKDVGPETVAAMAVIVREVVREVSI-----------PVGVNVLRNDAVAALAI 103 (263)
T ss_pred HHHHHHHhCCCcEEEEec---cCCCCCCCCCChHHHHHHHHHHHHHHHhccc-----------cceeeeeccccHHHHHH
Confidence 555555667999999974 45554 58999999999877654311 11111111124456667
Q ss_pred HHhcCCcEE-------EEECCCch---HHHHHHhhCCCCC
Q psy259 278 ASKVFAGAI-------VVLTTTGT---SARLISKYRPRCP 307 (398)
Q Consensus 278 A~~~~A~aI-------Iv~T~SG~---tA~~iSkyRP~~P 307 (398)
|...+|+.| +.+|..|- -|..+.|||+..+
T Consensus 104 A~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~ 143 (263)
T COG0434 104 AYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG 143 (263)
T ss_pred HHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc
Confidence 777788888 45677664 3677788887655
No 52
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.03 E-value=2.6 Score=44.15 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=77.9
Q ss_pred eEEEeCCCCCCHHHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEE-eec
Q psy259 54 IICTIGPASVAVDMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIA-KIE 130 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iia-KIE 130 (398)
..+.+|+.-.+.+..++|+++|.++-- -+|+ ...-..+-|+++|+. . .+..||+ -|-
T Consensus 144 v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g--------------~~~~~~~~v~~ik~~--~----p~~~vi~g~V~ 203 (404)
T PRK06843 144 VGAAVSIDIDTIERVEELVKAHVDILVIDSAHG--------------HSTRIIELVKKIKTK--Y----PNLDLIAGNIV 203 (404)
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCC--------------CChhHHHHHHHHHhh--C----CCCcEEEEecC
Confidence 445578766677899999999976632 2222 011122335566654 3 2455655 777
Q ss_pred ChHHHhcHHHHHHhcCeeEEcCCC---------CCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCch
Q psy259 131 NHQGVKNLDEIIAEADGIMVARGD---------LGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRA 201 (398)
Q Consensus 131 ~~~~v~n~deIl~~sDgimvaRgD---------Lg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptra 201 (398)
|.++..++.+. =+|+|.|+=|- .|+-.| .+. +-..+-+.+++.+.|||.. -..-+
T Consensus 204 T~e~a~~l~~a--GaD~I~vG~g~Gs~c~tr~~~g~g~p--~lt-ai~~v~~~~~~~~vpVIAd---------GGI~~-- 267 (404)
T PRK06843 204 TKEAALDLISV--GADCLKVGIGPGSICTTRIVAGVGVP--QIT-AICDVYEVCKNTNICIIAD---------GGIRF-- 267 (404)
T ss_pred CHHHHHHHHHc--CCCEEEECCCCCcCCcceeecCCCCC--hHH-HHHHHHHHHhhcCCeEEEe---------CCCCC--
Confidence 87776665442 38999987432 233222 111 1122334556778999963 23333
Q ss_pred hhhhHHHHHHhCCcEEEec
Q psy259 202 EISDVANAVLDGADCVMLS 220 (398)
Q Consensus 202 EvsDVanav~dG~D~vmLS 220 (398)
-.|++.|+..|||+||+.
T Consensus 268 -~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 268 -SGDVVKAIAAGADSVMIG 285 (404)
T ss_pred -HHHHHHHHHcCCCEEEEc
Confidence 259999999999999994
No 53
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=90.44 E-value=2.6 Score=38.74 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCC-CCEEEEeCCh-----------------------hhhhh
Q psy259 265 DSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPR-CPIISVTRFP-----------------------QVARQ 320 (398)
Q Consensus 265 ~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~-~PIIAVT~n~-----------------------~taRq 320 (398)
..++..-..|++-|.+++.+-|+|.|.||.||+.++-.-+. ..++.||... .+.+|
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~ 89 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQ 89 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeee
Confidence 34566777788889999999999999999999999999887 8899999732 44566
Q ss_pred ccccccceEEecCCCCCCCcccCHHHHHHHHHH-------H-------HHHcCCCCCCCeEEEEeccCCC
Q psy259 321 LHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIK-------Y-------GRDRKFLNQGDPVIVVTGWKKG 376 (398)
Q Consensus 321 L~L~wGV~Pvl~~~~~~~~w~~d~d~~I~~ai~-------~-------ake~Glik~GD~VVVvsG~~~g 376 (398)
.|.+-|+.--+....-+ -..-+.|...+. . +-+.|+++....||.+.|...|
T Consensus 90 sHalSg~eRsis~kfGG----~~p~eiiAetLR~fg~G~KVcvEItiMAaDaGlIp~~eeViAiGGt~~G 155 (186)
T COG1751 90 SHALSGVERSISRKFGG----YSPLEIIAETLRMFGQGVKVCVEITIMAADAGLIPVSEEVIAIGGTERG 155 (186)
T ss_pred hhhhhcchhhhhhhcCC----cchHHHHHHHHHHhcCCcEEEEEEEEEeccCCCcccceeEEEecccccC
Confidence 66665554333222100 011223333333 1 3356777777777777776555
No 54
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=89.92 E-value=1.1 Score=46.20 Aligned_cols=82 Identities=29% Similarity=0.398 Sum_probs=48.4
Q ss_pred cccEEE-eecChHHHhcHHHHHHhcCeeEEcCCC-------CCCCCChhhHHHHHHHHHHHHH----Hc---CCCEEEee
Q psy259 122 HIKIIA-KIENHQGVKNLDEIIAEADGIMVARGD-------LGIEIPPWKVFLAQKQMIAKCN----KV---GKPVICAT 186 (398)
Q Consensus 122 ~~~iia-KIE~~~~v~n~deIl~~sDgimvaRgD-------Lg~e~~~~~v~~~qk~ii~~c~----~~---gkpvi~AT 186 (398)
+++||+ .+-+.+....+-+ .=+|+||++||- |++.+|... +...+.+.++ +. ..|||.+-
T Consensus 188 ~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~~~~~~~lg~~~p~~~---ai~d~~~a~~~~~~e~g~r~vpVIAdG 262 (369)
T TIGR01304 188 DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGANTTRLVLGIEVPMAT---AIADVAAARRDYLDETGGRYVHVIADG 262 (369)
T ss_pred CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCcccccccCCCCCHHH---HHHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 578887 6666555443332 239999999863 333344211 1111111111 22 38999754
Q ss_pred hhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 187 QMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 187 QmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
-+-.+ .||+.|+..|||+||+.
T Consensus 263 GI~tg------------~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 263 GIETS------------GDLVKAIACGADAVVLG 284 (369)
T ss_pred CCCCH------------HHHHHHHHcCCCEeeeH
Confidence 43332 59999999999999994
No 55
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.87 E-value=3.1 Score=44.32 Aligned_cols=132 Identities=21% Similarity=0.230 Sum_probs=76.8
Q ss_pred eEEEeCCCCCCHHHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccE-EEeec
Q psy259 54 IICTIGPASVAVDMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKI-IAKIE 130 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~i-iaKIE 130 (398)
+-.-||+.-.+.|..+.|+++|..+-. -.|+ ...-+++.+..+|+- + .++.| +.-+-
T Consensus 219 V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g--------------~~~~vl~~i~~i~~~--~----p~~~vi~g~v~ 278 (486)
T PRK05567 219 VGAAVGVGADNEERAEALVEAGVDVLVVDTAHG--------------HSEGVLDRVREIKAK--Y----PDVQIIAGNVA 278 (486)
T ss_pred EEeecccCcchHHHHHHHHHhCCCEEEEECCCC--------------cchhHHHHHHHHHhh--C----CCCCEEEeccC
Confidence 334455433568899999999965421 1111 112244556666654 3 24554 46777
Q ss_pred ChHHHhcHHHHHHhcCeeEEcCCCCCCC-------CChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhh
Q psy259 131 NHQGVKNLDEIIAEADGIMVARGDLGIE-------IPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEI 203 (398)
Q Consensus 131 ~~~~v~n~deIl~~sDgimvaRgDLg~e-------~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEv 203 (398)
+.+...++-+. =+|+|-||=|--+++ ++.+. +.+-..+.+.|++.|.|+|. .-...+-
T Consensus 279 t~e~a~~l~~a--Gad~i~vg~g~gs~~~~r~~~~~g~p~-~~~~~~~~~~~~~~~~~via---------dGGi~~~--- 343 (486)
T PRK05567 279 TAEAARALIEA--GADAVKVGIGPGSICTTRIVAGVGVPQ-ITAIADAAEAAKKYGIPVIA---------DGGIRYS--- 343 (486)
T ss_pred CHHHHHHHHHc--CCCEEEECCCCCccccceeecCCCcCH-HHHHHHHHHHhccCCCeEEE---------cCCCCCH---
Confidence 77766655431 389998753321111 11111 22334455666777899986 3333332
Q ss_pred hhHHHHHHhCCcEEEec
Q psy259 204 SDVANAVLDGADCVMLS 220 (398)
Q Consensus 204 sDVanav~dG~D~vmLS 220 (398)
.|++.|+..|||+||+.
T Consensus 344 ~di~kAla~GA~~v~~G 360 (486)
T PRK05567 344 GDIAKALAAGASAVMLG 360 (486)
T ss_pred HHHHHHHHhCCCEEEEC
Confidence 69999999999999995
No 56
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.78 E-value=3.4 Score=44.04 Aligned_cols=129 Identities=23% Similarity=0.257 Sum_probs=80.3
Q ss_pred EEeCCCCCCHHHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEe-ecCh
Q psy259 56 CTIGPASVAVDMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAK-IENH 132 (398)
Q Consensus 56 ctigp~~~~~e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaK-IE~~ 132 (398)
.-+|..-...+.++.|+++|.++-- -+|+ ...-.+|=|+.||+. . .++.||+- +-|.
T Consensus 218 aav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g--------------~~~~~~~~i~~i~~~--~----~~~~vi~g~~~t~ 277 (475)
T TIGR01303 218 AAVGINGDVGGKAKALLDAGVDVLVIDTAHG--------------HQVKMISAIKAVRAL--D----LGVPIVAGNVVSA 277 (475)
T ss_pred heeeeCccHHHHHHHHHHhCCCEEEEeCCCC--------------CcHHHHHHHHHHHHH--C----CCCeEEEeccCCH
Confidence 3466666777889999999966622 2332 122223335555554 2 36788885 7777
Q ss_pred HHHhcHHHHHHhcCeeEEc---------CCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhh
Q psy259 133 QGVKNLDEIIAEADGIMVA---------RGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEI 203 (398)
Q Consensus 133 ~~v~n~deIl~~sDgimva---------RgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEv 203 (398)
++..++.+ .=+|+|-|+ |+-.++-.|. ..+-....+.+++.|+|||. .-...+-
T Consensus 278 ~~~~~l~~--~G~d~i~vg~g~Gs~~ttr~~~~~g~~~---~~a~~~~~~~~~~~~~~via---------dGgi~~~--- 340 (475)
T TIGR01303 278 EGVRDLLE--AGANIIKVGVGPGAMCTTRMMTGVGRPQ---FSAVLECAAEARKLGGHVWA---------DGGVRHP--- 340 (475)
T ss_pred HHHHHHHH--hCCCEEEECCcCCccccCccccCCCCch---HHHHHHHHHHHHHcCCcEEE---------eCCCCCH---
Confidence 77666543 127888654 4444444332 22333455566788999986 3333333
Q ss_pred hhHHHHHHhCCcEEEecC
Q psy259 204 SDVANAVLDGADCVMLSG 221 (398)
Q Consensus 204 sDVanav~dG~D~vmLS~ 221 (398)
.|++.|+..|||+||+.+
T Consensus 341 ~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 341 RDVALALAAGASNVMVGS 358 (475)
T ss_pred HHHHHHHHcCCCEEeech
Confidence 699999999999999975
No 57
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.12 E-value=3.6 Score=41.89 Aligned_cols=133 Identities=22% Similarity=0.246 Sum_probs=75.1
Q ss_pred eeEEEe--CCCCCCHHHHHHHHHhcc--cccc--cCCCCCCCCCCCCCCCCCCCcccHH-HHHHHHHHhhchhcCCcccE
Q psy259 53 GIICTI--GPASVAVDMLEKIIETES--NSDE--CSEKPRECPSEPEPPHCKEPNLYES-NVRLIEKLMATGEQGKHIKI 125 (398)
Q Consensus 53 ~Iicti--gp~~~~~e~l~~~i~~Gm--nvr~--~~~~~~pgp~~~~~~k~~~~~~~vd-dV~~ir~~~~l~~~~~~~~i 125 (398)
++++-+ |..-...|...+|+++|. ++-. .+|+ ...++. =|.++|+. -.++.|
T Consensus 85 ~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~g---------------h~~~~~e~I~~ir~~------~p~~~v 143 (326)
T PRK05458 85 GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHG---------------HSDSVINMIQHIKKH------LPETFV 143 (326)
T ss_pred ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCC---------------chHHHHHHHHHHHhh------CCCCeE
Confidence 556644 444456688999999974 4422 2221 111111 13444443 245789
Q ss_pred EEe-ecChHHHhcHHHHHHhcCeeEEcCCCCCC--C---CChhhHHHHHHHHHHHHHH-cCCCEEEeehhhHHhhcCCCC
Q psy259 126 IAK-IENHQGVKNLDEIIAEADGIMVARGDLGI--E---IPPWKVFLAQKQMIAKCNK-VGKPVICATQMLESMIKKPRA 198 (398)
Q Consensus 126 iaK-IE~~~~v~n~deIl~~sDgimvaRgDLg~--e---~~~~~v~~~qk~ii~~c~~-~gkpvi~ATQmLeSMi~~~~P 198 (398)
|++ +-|.+...++.+ .=+|+|.|+=|.=.. + .+ -..+.+|-..+..|.+ ..+|||. .-..-
T Consensus 144 i~g~V~t~e~a~~l~~--aGad~i~vg~~~G~~~~t~~~~g-~~~~~w~l~ai~~~~~~~~ipVIA---------dGGI~ 211 (326)
T PRK05458 144 IAGNVGTPEAVRELEN--AGADATKVGIGPGKVCITKIKTG-FGTGGWQLAALRWCAKAARKPIIA---------DGGIR 211 (326)
T ss_pred EEEecCCHHHHHHHHH--cCcCEEEECCCCCcccccccccC-CCCCccHHHHHHHHHHHcCCCEEE---------eCCCC
Confidence 997 988887766554 228999977221111 1 00 0122223333444433 4688886 33333
Q ss_pred CchhhhhHHHHHHhCCcEEEecC
Q psy259 199 TRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 199 traEvsDVanav~dG~D~vmLS~ 221 (398)
+. .||+.|+..|||+||+.+
T Consensus 212 ~~---~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 212 TH---GDIAKSIRFGATMVMIGS 231 (326)
T ss_pred CH---HHHHHHHHhCCCEEEech
Confidence 33 499999999999999974
No 58
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.94 E-value=2 Score=42.18 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=57.9
Q ss_pred cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCC-CCCc
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKP-RATR 200 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~-~Ptr 200 (398)
.+.+++-+-+.+.++-+.+ .+|.+-|+-+++- |-.+++++.+.||||++ +++ .+|-
T Consensus 79 Gl~~~Tev~d~~~v~~~~e---~vdilqIgs~~~~-----------n~~LL~~va~tgkPVil---------k~G~~~t~ 135 (250)
T PRK13397 79 GLLSVSEIMSERQLEEAYD---YLDVIQVGARNMQ-----------NFEFLKTLSHIDKPILF---------KRGLMATI 135 (250)
T ss_pred CCCEEEeeCCHHHHHHHHh---cCCEEEECccccc-----------CHHHHHHHHccCCeEEE---------eCCCCCCH
Confidence 5889998888777665554 6999999977662 34577788889999998 555 7788
Q ss_pred hhhhhHHHHHHh-CCcEEEec
Q psy259 201 AEISDVANAVLD-GADCVMLS 220 (398)
Q Consensus 201 aEvsDVanav~d-G~D~vmLS 220 (398)
.|+-..+..+.. |..=++|.
T Consensus 136 ~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 136 EEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred HHHHHHHHHHHHcCCCeEEEE
Confidence 888888888774 66556665
No 59
>PRK06852 aldolase; Validated
Probab=87.53 E-value=2.1 Score=43.10 Aligned_cols=107 Identities=15% Similarity=-0.018 Sum_probs=58.3
Q ss_pred CCCchhhhhHHHHHHhC------CcEEEecCccCCC-CChHHHHHHHHHHHHHHHhhhhh--hHHHHHHhhcCCCCCChH
Q psy259 197 RATRAEISDVANAVLDG------ADCVMLSGETAKG-DYPVECVRAMHNTCKEAEAAIWH--TKLLTELKSMLPLPIDSA 267 (398)
Q Consensus 197 ~PtraEvsDVanav~dG------~D~vmLS~ETA~G-~yP~eaV~~m~~I~~~aE~~~~~--~~~~~~~~~~~~~~~~~~ 267 (398)
.|...=+++|-.|+..| ||||..+- -.| .+=-+.++.+.+++.++++.=-- -..|..- ....... ..
T Consensus 112 ~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v--~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG-~~i~~~~-~~ 187 (304)
T PRK06852 112 DPLSRQLLDVEQVVEFKENSGLNILGVGYTI--YLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRG-KAVKDEK-DP 187 (304)
T ss_pred CccccceecHHHHHhcCCccCCCceEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccC-cccCCCc-cH
Confidence 45555679999999999 88988742 233 23356677777777777763100 0011110 0011111 23
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECCC-----c--hHHHHHHhhCCCCCEE
Q psy259 268 HSVAIAAVEAASKVFAGAIVVLTTT-----G--TSARLISKYRPRCPII 309 (398)
Q Consensus 268 ~~ia~aav~~A~~~~A~aIIv~T~S-----G--~tA~~iSkyRP~~PII 309 (398)
+.++. |+++|.+++|+.|=+. .+ | .+-+.+.....++||+
T Consensus 188 ~~ia~-aaRiaaELGADIVKv~-y~~~~~~g~~e~f~~vv~~~g~vpVv 234 (304)
T PRK06852 188 HLIAG-AAGVAACLGADFVKVN-YPKKEGANPAELFKEAVLAAGRTKVV 234 (304)
T ss_pred HHHHH-HHHHHHHHcCCEEEec-CCCcCCCCCHHHHHHHHHhCCCCcEE
Confidence 45554 4588899999965443 23 3 3444455554335543
No 60
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=85.36 E-value=13 Score=36.87 Aligned_cols=165 Identities=21% Similarity=0.218 Sum_probs=91.6
Q ss_pred CCcccEEE---eecC---hHHHhcHHHHHHh-----cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehh
Q psy259 120 GKHIKIIA---KIEN---HQGVKNLDEIIAE-----ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQM 188 (398)
Q Consensus 120 ~~~~~iia---KIE~---~~~v~n~deIl~~-----sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQm 188 (398)
..+..|++ ++|. .++++|++++++. +|+++.-+|=+..--+. -.+.+|.|+ .
T Consensus 21 tG~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~~~--------------y~~dvpliv---k 83 (265)
T COG1830 21 TGRLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMTPGIARSVHRG--------------YAHDVPLIV---K 83 (265)
T ss_pred CCCEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEecHhHHhhcCcc--------------ccCCcCEEE---E
Confidence 34566666 5665 3578888888775 68888777733221111 123578887 5
Q ss_pred hHHhhc-CCCCCchh--hhhHHHHHHhCCcEEEe----cCccCCCCChHHHHHHHHHHHHHHHhhhhh--hHHHHHHhhc
Q psy259 189 LESMIK-KPRATRAE--ISDVANAVLDGADCVML----SGETAKGDYPVECVRAMHNTCKEAEAAIWH--TKLLTELKSM 259 (398)
Q Consensus 189 LeSMi~-~~~PtraE--vsDVanav~dG~D~vmL----S~ETA~G~yP~eaV~~m~~I~~~aE~~~~~--~~~~~~~~~~ 259 (398)
|.++.. .|.| +-+ ++.|-.|+..|+|+|-. .+|+- -|.++.+.++...+...=-. ...|..-...
T Consensus 84 l~~~t~l~~~~-~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~ 157 (265)
T COG1830 84 LNGSTSLSPDP-NDQVLVATVEDAIRLGADAVGATVYVGSETE-----REMIENISQVVEDAHELGMPLVAWAYPRGPAI 157 (265)
T ss_pred eccccccCCCc-ccceeeeeHHHHHhCCCcEEEEEEecCCcch-----HHHHHHHHHHHHHHHHcCCceEEEEeccCCcc
Confidence 666643 2223 333 37888999999999854 34444 46666666666666542100 0011110000
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCc--hHHHHHHhhCCCCCEEE
Q psy259 260 LPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTG--TSARLISKYRPRCPIIS 310 (398)
Q Consensus 260 ~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~SG--~tA~~iSkyRP~~PIIA 310 (398)
...+....+.++. |.+++.+++|+.|= --.+| .+-+.+-++.| +||+.
T Consensus 158 ~~~~~~d~~~v~~-aaRlaaelGADIiK-~~ytg~~e~F~~vv~~~~-vpVvi 207 (265)
T COG1830 158 KDEYHRDADLVGY-AARLAAELGADIIK-TKYTGDPESFRRVVAACG-VPVVI 207 (265)
T ss_pred cccccccHHHHHH-HHHHHHHhcCCeEe-ecCCCChHHHHHHHHhCC-CCEEE
Confidence 0001223344544 45677789999543 33444 66677777777 77653
No 61
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=84.73 E-value=2.6 Score=45.71 Aligned_cols=68 Identities=22% Similarity=0.167 Sum_probs=58.1
Q ss_pred CcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCC----------------CCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 121 KHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGI----------------EIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 121 ~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~----------------e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
.++.+=.+||.|.+.-..|.+++.+|-.=||-.||.- .--.+-|-...+++|+.++++||||++
T Consensus 423 ~~i~lGiMIEvPsAa~~a~~lakevDFfSIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgm 502 (574)
T COG1080 423 EKIELGIMIEVPSAALIADQLAKEVDFFSIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGM 502 (574)
T ss_pred cccceeEEEehhHHHHHHHHHHHhCCEeeecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeee
Confidence 3788889999999999999999999999999998842 111277889999999999999999998
Q ss_pred eehh
Q psy259 185 ATQM 188 (398)
Q Consensus 185 ATQm 188 (398)
+-.|
T Consensus 503 CGEl 506 (574)
T COG1080 503 CGEL 506 (574)
T ss_pred chhh
Confidence 7654
No 62
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=84.24 E-value=20 Score=35.40 Aligned_cols=144 Identities=19% Similarity=0.335 Sum_probs=85.8
Q ss_pred eCCCCC-CHHH----HHHHHHhcccc-cccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEeecC
Q psy259 58 IGPASV-AVDM----LEKIIETESNS-DECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIEN 131 (398)
Q Consensus 58 igp~~~-~~e~----l~~~i~~Gmnv-r~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~ 131 (398)
.||-+- +.|. -++|-+.|..+ |.++.+||- ..+..++-. ....+.+|++ ..+ ..+.+++-+-+
T Consensus 32 aGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRT---s~~s~~G~g----~~gl~~l~~~--~~~--~Gl~~~te~~d 100 (266)
T PRK13398 32 AGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRT---SPYSFQGLG----EEGLKILKEV--GDK--YNLPVVTEVMD 100 (266)
T ss_pred EeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCC---CCCccCCcH----HHHHHHHHHH--HHH--cCCCEEEeeCC
Confidence 388665 4333 35566677666 445555411 111111111 2245677777 544 35899999988
Q ss_pred hHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHH
Q psy259 132 HQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL 211 (398)
Q Consensus 132 ~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~ 211 (398)
...++-+.+ .+|.+-|+-+++- |..+++.+-+.||||++.|-| ..|-.|+-+.+..+.
T Consensus 101 ~~~~~~l~~---~vd~~kIga~~~~-----------n~~LL~~~a~~gkPV~lk~G~--------~~s~~e~~~A~e~i~ 158 (266)
T PRK13398 101 TRDVEEVAD---YADMLQIGSRNMQ-----------NFELLKEVGKTKKPILLKRGM--------SATLEEWLYAAEYIM 158 (266)
T ss_pred hhhHHHHHH---hCCEEEECccccc-----------CHHHHHHHhcCCCcEEEeCCC--------CCCHHHHHHHHHHHH
Confidence 877766655 4799999977652 234666777899999985443 335557766666665
Q ss_pred -hCCcEEEe--cCccCCCCChHHHHH
Q psy259 212 -DGADCVML--SGETAKGDYPVECVR 234 (398)
Q Consensus 212 -dG~D~vmL--S~ETA~G~yP~eaV~ 234 (398)
.|..=++| .|=.....||.+.|.
T Consensus 159 ~~Gn~~i~L~~rG~~t~~~Y~~~~vd 184 (266)
T PRK13398 159 SEGNENVVLCERGIRTFETYTRNTLD 184 (266)
T ss_pred hcCCCeEEEEECCCCCCCCCCHHHHH
Confidence 46643444 442244589966544
No 63
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=83.79 E-value=3.5 Score=44.29 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=55.3
Q ss_pred cccEEEeecChHHHhcHHHHHHh-c-------CeeEEcCCCCCCCCCh----hhHHHHHHHHHHHHHHcCCCEEE
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-A-------DGIMVARGDLGIEIPP----WKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-s-------DgimvaRgDLg~e~~~----~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
.+.||.=+|+.+++.|.++|++. . =-||+||.|=+.+.|. -.+..+|.++.+.|+++|.++..
T Consensus 173 ~i~VIPLFEt~~dL~~a~~Il~~~l~~~~~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 173 KIRVIPLIEDKDSLLNADEIVKEYAEAHEPEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred CcCeecCcCCHHHHHhHHHHHHHHHHhcCcCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 56899999999999999999987 2 1479999999999997 55678999999999999998764
No 64
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=83.41 E-value=16 Score=36.76 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=86.1
Q ss_pred ceeEEEeCCCCCCH--HHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEE
Q psy259 52 TGIICTIGPASVAV--DMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIA 127 (398)
Q Consensus 52 t~Iictigp~~~~~--e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iia 127 (398)
..+|+.|+..+... +..+.+.++|.+.-+ ++.- |+.. -....+.++ .|.+-+.++|+. . ++.|++
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scp--p~~~-~~~g~~~~~-~~~eil~~v~~~--~-----~iPV~v 170 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYL--PTDP-DISGAEVEQ-RYLDILRAVKSA--V-----SIPVAV 170 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCC--CCCC-CCccccHHH-HHHHHHHHHHhc--c-----CCcEEE
Confidence 56788886544322 445566666755433 2221 1110 000000011 123334445544 2 589999
Q ss_pred eecChHHHhcHHHHHHh-----cCeeEEcCCCCCCCCCh--------------hhHHHHHHHHHHHHHHcCCCEEEeehh
Q psy259 128 KIENHQGVKNLDEIIAE-----ADGIMVARGDLGIEIPP--------------WKVFLAQKQMIAKCNKVGKPVICATQM 188 (398)
Q Consensus 128 KIE~~~~v~n~deIl~~-----sDgimvaRgDLg~e~~~--------------~~v~~~qk~ii~~c~~~gkpvi~ATQm 188 (398)
|+ ++ .+.++.++++. +|||.+.-.=.+..+.. .-.+.+.+.+-+..+..+.|+|-.
T Consensus 171 Kl-~p-~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~--- 245 (334)
T PRK07565 171 KL-SP-YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAAT--- 245 (334)
T ss_pred Ee-CC-CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEE---
Confidence 97 33 23344455443 79886632212211111 123444544444444557888752
Q ss_pred hHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhh
Q psy259 189 LESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIW 248 (398)
Q Consensus 189 LeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 248 (398)
-..-| ..|+..++..|||+||+...--... | ....+|+++.+..+.
T Consensus 246 ------GGI~s---~~Da~e~l~aGA~~V~v~t~~~~~g-~----~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 246 ------TGVHD---AEDVIKMLLAGADVVMIASALLRHG-P----DYIGTILRGLEDWME 291 (334)
T ss_pred ------CCCCC---HHHHHHHHHcCCCceeeehHHhhhC-c----HHHHHHHHHHHHHHH
Confidence 23333 3589999999999999974333311 3 567778888876543
No 65
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=83.40 E-value=13 Score=36.57 Aligned_cols=88 Identities=22% Similarity=0.357 Sum_probs=61.7
Q ss_pred HHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
+..++++ ..+. .+.+++-+-+.+.++-+.+ ..|.+-|+-+++. |..+++.+.+.||||++.|
T Consensus 78 l~~l~~~--~~~~--Gl~~~t~~~d~~~~~~l~~---~~d~lkI~s~~~~-----------n~~LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 78 LKLLRRA--ADEH--GLPVVTEVMDPRDVEIVAE---YADILQIGARNMQ-----------NFELLKEVGKQGKPVLLKR 139 (260)
T ss_pred HHHHHHH--HHHh--CCCEEEeeCChhhHHHHHh---hCCEEEECccccc-----------CHHHHHHHhcCCCcEEEeC
Confidence 3555555 4333 5889998888877766654 4799999977652 2347788889999999965
Q ss_pred hhhHHhhcCCCCCchhhhhHHHHHH-hCCcEEEec
Q psy259 187 QMLESMIKKPRATRAEISDVANAVL-DGADCVMLS 220 (398)
Q Consensus 187 QmLeSMi~~~~PtraEvsDVanav~-dG~D~vmLS 220 (398)
-|- +|-.|+-..+..+. .|.+=++|.
T Consensus 140 G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 140 GMG--------NTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCC--------CCHHHHHHHHHHHHHcCCCcEEEE
Confidence 543 46677777777775 577656664
No 66
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=81.15 E-value=5.3 Score=41.00 Aligned_cols=134 Identities=15% Similarity=0.041 Sum_probs=73.5
Q ss_pred HHhcHHHHHHh-----cCeeEEcCCCCCCCCChhhHHHHHHHHHHHH-H--HcCCCEEEeehhhHHhhcCCCCCchhhhh
Q psy259 134 GVKNLDEIIAE-----ADGIMVARGDLGIEIPPWKVFLAQKQMIAKC-N--KVGKPVICATQMLESMIKKPRATRAEISD 205 (398)
Q Consensus 134 ~v~n~deIl~~-----sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c-~--~~gkpvi~ATQmLeSMi~~~~PtraEvsD 205 (398)
|++|.+.+++. +|+++..+| +++.+ . ...+|.|+--.-=.|+.....+...=+++
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~~G-----------------~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~s 151 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVASTLG-----------------VLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTAS 151 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeCHH-----------------HHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceec
Confidence 66676666554 789998766 33331 1 23578777522111221222345566699
Q ss_pred HHHHHHhCCcEEEecCccCCC-CChHHHHHHHHHHHHHHHhhhhh--hHHHHHHhhcCCCCCC---hHHHHHHHHHHHHH
Q psy259 206 VANAVLDGADCVMLSGETAKG-DYPVECVRAMHNTCKEAEAAIWH--TKLLTELKSMLPLPID---SAHSVAIAAVEAAS 279 (398)
Q Consensus 206 Vanav~dG~D~vmLS~ETA~G-~yP~eaV~~m~~I~~~aE~~~~~--~~~~~~~~~~~~~~~~---~~~~ia~aav~~A~ 279 (398)
|-.|+..|||||..+- -.| .+=-+.++.+.+++.++++.=-- ...|..-.. ...+.+ ..+.++ .|+++|.
T Consensus 152 VedAlrLGAdAV~~tv--y~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~-i~~~~d~~~~~d~Ia-~AaRiaa 227 (348)
T PRK09250 152 VEDALRLGAVAVGATI--YFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSA-FKKDGDYHTAADLTG-QANHLAA 227 (348)
T ss_pred HHHHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcc-cCCcccccccHHHHH-HHHHHHH
Confidence 9999999999998852 233 22245666677777777763100 001211100 111111 234444 5567888
Q ss_pred hcCCcEEEE
Q psy259 280 KVFAGAIVV 288 (398)
Q Consensus 280 ~~~A~aIIv 288 (398)
+++|+.|=+
T Consensus 228 ELGADIVKv 236 (348)
T PRK09250 228 TIGADIIKQ 236 (348)
T ss_pred HHcCCEEEe
Confidence 899996533
No 67
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=81.07 E-value=48 Score=33.32 Aligned_cols=107 Identities=22% Similarity=0.303 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCC--ChhhHHHHHHHHHHHHH-HcC
Q psy259 104 ESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEI--PPWKVFLAQKQMIAKCN-KVG 179 (398)
Q Consensus 104 vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~--~~~~v~~~qk~ii~~c~-~~g 179 (398)
.+||++||+. . +++||+|+-.-- +...+++.++ +|-| | ..+. |.+++ +...+ +.+
T Consensus 56 p~~I~~I~~~--V-----~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrPade~-------~~~~K~~f~ 114 (287)
T TIGR00343 56 PKMIKEIMDA--V-----SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTPADWT-------FHIDKKKFK 114 (287)
T ss_pred HHHHHHHHHh--C-----CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCcHHHH-------HHHHHHHcC
Confidence 4477777777 4 789999774322 4444444444 7777 4 3333 33332 22223 347
Q ss_pred CCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 180 KPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 180 kpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
.|+.|- .- ...+.-+++..|+|.|--++|--.| +-+|||+-|+.+-.+....
T Consensus 115 vpfmad-----------~~---~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 115 VPFVCG-----------AR---DLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCEEcc-----------CC---CHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 888872 11 1234467889999999999997777 6799999999998887653
No 68
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=80.09 E-value=19 Score=37.10 Aligned_cols=89 Identities=19% Similarity=0.334 Sum_probs=61.6
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
....++++ ..+. .+.+++-+-+.+.++-+.+ .+|.+-|+-+++.- ..++..+-+.||||++.
T Consensus 170 ~l~~L~~~--~~~~--Gl~~~t~v~d~~~~~~l~~---~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk 231 (360)
T PRK12595 170 GLKILKQV--ADEY--GLAVISEIVNPADVEVALD---YVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLK 231 (360)
T ss_pred HHHHHHHH--HHHc--CCCEEEeeCCHHHHHHHHH---hCCeEEECcccccC-----------HHHHHHHHccCCcEEEe
Confidence 34555665 4333 5889998888777665544 49999999776632 35677778899999985
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHH-hCCcEEEec
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVL-DGADCVMLS 220 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~-dG~D~vmLS 220 (398)
|-| .+|-.|+-..++.+. .|.+-++|.
T Consensus 232 ~G~--------~~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 232 RGL--------SATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CCC--------CCCHHHHHHHHHHHHHCCCCCEEEE
Confidence 443 266677877777776 477556665
No 69
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=79.91 E-value=21 Score=36.70 Aligned_cols=91 Identities=24% Similarity=0.329 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhchhcCCcccEEEe-ecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc--CC
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIAK-IENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV--GK 180 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iiaK-IE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~--gk 180 (398)
+|+.++|+. . +.+|+.| |-++ +......+. +|+|.|. |--|-.+.. .+.....+.+.++.. ..
T Consensus 211 ~~l~~lr~~--~-----~~PvivKgv~~~---~dA~~a~~~G~d~I~vs-nhGGr~ld~--~~~~~~~l~~i~~a~~~~i 277 (351)
T cd04737 211 ADIEFIAKI--S-----GLPVIVKGIQSP---EDADVAINAGADGIWVS-NHGGRQLDG--GPASFDSLPEIAEAVNHRV 277 (351)
T ss_pred HHHHHHHHH--h-----CCcEEEecCCCH---HHHHHHHHcCCCEEEEe-CCCCccCCC--CchHHHHHHHHHHHhCCCC
Confidence 688888887 4 4689999 3222 222233333 8999994 111222110 011111122222233 37
Q ss_pred CEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 181 PVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 181 pvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
|||.. ...-+ ..||..|+..|||+||+.
T Consensus 278 ~vi~d---------GGIr~---g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 278 PIIFD---------SGVRR---GEHVFKALASGADAVAVG 305 (351)
T ss_pred eEEEE---------CCCCC---HHHHHHHHHcCCCEEEEC
Confidence 88863 22222 469999999999999994
No 70
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=79.70 E-value=22 Score=35.91 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 179 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 179 gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
..|+|.+.-+- ...||+.|+..|||+|+++.
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~ 285 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAG 285 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcH
Confidence 68888754432 23699999999999999974
No 71
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=79.08 E-value=46 Score=29.58 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=75.3
Q ss_pred ChHHHhcHHHHH-Hh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHH--cC--CCEEEeehhhHHhhcCCCCCchhhh
Q psy259 131 NHQGVKNLDEII-AE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNK--VG--KPVICATQMLESMIKKPRATRAEIS 204 (398)
Q Consensus 131 ~~~~v~n~deIl-~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~--~g--kpvi~ATQmLeSMi~~~~PtraEvs 204 (398)
+.+.++++-+-+ +. .|||.+.. .+++.+.+ .| .|+++-+--.. ...+|+.-+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-----------------~~i~~~~~~~~~~~~~v~~~v~~~~----~~~~~~~~~~ 69 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-----------------GYVRLAADALAGSDVPVIVVVGFPT----GLTTTEVKVA 69 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-----------------HHHHHHHHHhCCCCCeEEEEecCCC----CCCcHHHHHH
Confidence 555555543333 32 79998883 33343332 23 66665321100 0022455556
Q ss_pred hHHHHHHhCCcEEEecCccCCCCC----hHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHh
Q psy259 205 DVANAVLDGADCVMLSGETAKGDY----PVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASK 280 (398)
Q Consensus 205 DVanav~dG~D~vmLS~ETA~G~y----P~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~ 280 (398)
.+..|...|+|++++..-. +.. +-+.++...+++..++..+.- -.|. .|......+.+. ..++++.+
T Consensus 70 ~a~~a~~~Gad~i~v~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~pv-~iy~-----~p~~~~~~~~~~-~~~~~~~~ 140 (201)
T cd00945 70 EVEEAIDLGADEIDVVINI--GSLKEGDWEEVLEEIAAVVEAADGGLPL-KVIL-----ETRGLKTADEIA-KAARIAAE 140 (201)
T ss_pred HHHHHHHcCCCEEEEeccH--HHHhCCCHHHHHHHHHHHHHHhcCCceE-EEEE-----ECCCCCCHHHHH-HHHHHHHH
Confidence 7788888899999995321 111 345566666676655211100 0001 111111223333 33555566
Q ss_pred cCCcEEEEECC------CchHHHHHHhh-CCCCCEEEEeCCh
Q psy259 281 VFAGAIVVLTT------TGTSARLISKY-RPRCPIISVTRFP 315 (398)
Q Consensus 281 ~~A~aIIv~T~------SG~tA~~iSky-RP~~PIIAVT~n~ 315 (398)
.++++|=..+. +-...+.+.+. .+++||++.....
T Consensus 141 ~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 141 AGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred hCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 78887654432 11222333333 3367888887644
No 72
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=79.04 E-value=52 Score=33.02 Aligned_cols=46 Identities=20% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhc-----CCcEEEEECCCchHHHHHHhh----CCCCCEEEEeCCh
Q psy259 270 VAIAAVEAASKV-----FAGAIVVLTTTGTSARLISKY----RPRCPIISVTRFP 315 (398)
Q Consensus 270 ia~aav~~A~~~-----~A~aIIv~T~SG~tA~~iSky----RP~~PIIAVT~n~ 315 (398)
....+.++..+. ..++||+.+=||.|+--++++ .|++.|++|-+..
T Consensus 167 ~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 167 YVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 333444666654 478999999999998766654 5999999999865
No 73
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=79.03 E-value=47 Score=31.35 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhh
Q psy259 169 KQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIW 248 (398)
Q Consensus 169 k~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 248 (398)
.-+...|+..|.|+++- .|....-..+...-..|++.+...+. | -++.+...+++++-...++
T Consensus 63 ~alA~~a~~~g~~~~v~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~-~~~~~~a~~~~~~~~~~~~ 125 (244)
T cd00640 63 IALAAAAARLGLKCTIV-----------MPEGASPEKVAQMRALGAEVVLVPGD-----F-DDAIALAKELAEEDPGAYY 125 (244)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC-----H-HHHHHHHHHHHHhCCCCEe
Confidence 35667889999999983 45555556667788889998777543 3 3555555555443111111
Q ss_pred hhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC---CcEEEEECCCchHHHHHH----hhCCCCCEEEEeC
Q psy259 249 HTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF---AGAIVVLTTTGTSARLIS----KYRPRCPIISVTR 313 (398)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~---A~aIIv~T~SG~tA~~iS----kyRP~~PIIAVT~ 313 (398)
-.+ | ......+.....+.++..+++ .+.|++.+-+|.|+.-++ ..+|...|++|-+
T Consensus 126 ~~~-~--------~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 126 VNQ-F--------DNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred cCC-C--------CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 111 0 011222333345566666665 589999999999886544 4568899999877
No 74
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=78.85 E-value=5.4 Score=45.59 Aligned_cols=88 Identities=19% Similarity=0.024 Sum_probs=67.5
Q ss_pred cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCC------------C------------CC-----hhhHHHHHHHHH
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGI------------E------------IP-----PWKVFLAQKQMI 172 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~------------e------------~~-----~~~v~~~qk~ii 172 (398)
+++|=++||+|.|.-..|+|++.+|.+=||=.||.- . =| .+-|-...++++
T Consensus 732 ~~~iG~MiE~P~aal~ad~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i 811 (856)
T TIGR01828 732 PYEIGTMIEIPRAALTADKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAV 811 (856)
T ss_pred CCeEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHH
Confidence 478889999999999999999999999998666531 0 12 256788889999
Q ss_pred HHHHH--cCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 173 AKCNK--VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 173 ~~c~~--~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
++|++ .|+||.++-+|- ..|.-. .-.+..|.|-+-.|
T Consensus 812 ~~a~~~~~~~~vgvCGE~a------~dp~~i-----~~l~~~Gi~~~S~s 850 (856)
T TIGR01828 812 EKGRQTRPNLKVGICGEHG------GDPSSI-----EFCHKIGLNYVSCS 850 (856)
T ss_pred HHHhhcCCCCEEEeCCCCc------CCHHHH-----HHHHHCCCCEEEEC
Confidence 99998 899999987752 234333 45566788887766
No 75
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=78.12 E-value=3.7 Score=44.94 Aligned_cols=107 Identities=22% Similarity=0.200 Sum_probs=83.3
Q ss_pred cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCC-----CCC-----------hhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGI-----EIP-----------PWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~-----e~~-----------~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..+|=+++|-+.-+..+|++....|-|=||-.||.- +=+ .+-+-.+-|+|.+.|.++|+||-++
T Consensus 597 ~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvDR~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlC 676 (756)
T COG3605 597 KPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVDRNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLC 676 (756)
T ss_pred CCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHhcCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeeh
Confidence 567889999999999999999999999999999842 222 1556788999999999999999998
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHh
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEA 245 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~ 245 (398)
..|= ..|--| .--|..|.|-+-.|+ |++|+ |++|-+-+..+|.
T Consensus 677 GEMA------g~Pl~A-----~~LigLGfrslSMn~-~~v~~-----VK~ml~~ld~~~~ 719 (756)
T COG3605 677 GEMA------GDPLSA-----MALIGLGFRSLSMNP-RSVGP-----VKYLLRHLDLAEA 719 (756)
T ss_pred hhhc------CChHHH-----HHHHhcCcCccccCc-ccccc-----HHHHHHhccHHHH
Confidence 7763 356555 556778999887774 56664 6777666655554
No 76
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=75.76 E-value=7.8 Score=43.57 Aligned_cols=88 Identities=24% Similarity=0.104 Sum_probs=74.6
Q ss_pred cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCC------------CCChhhHHHHHHHHHHHHHHcCCCEEEeehhh
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGI------------EIPPWKVFLAQKQMIAKCNKVGKPVICATQML 189 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~------------e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmL 189 (398)
+.++..+||-+.++-..|||++..|+.=++-+||.- +...+.|-..-++.+..|+..|+.++++.|--
T Consensus 624 ~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~~~v~~li~~a~~~~~~~~~~~~icG~~~ 703 (740)
T COG0574 624 NYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERDPAVLKLIIIAIKAADSGGLLVGICGQAP 703 (740)
T ss_pred eEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeeccccccccccccHHHHHHHHHhcccccCcEEEEeccCC
Confidence 389999999999999999999999999999999863 33347788899999999999999999998854
Q ss_pred HHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 190 ESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 190 eSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
+- |.-| .-++..|.|+|.++
T Consensus 704 ~~------p~~a-----~~~~e~Gi~~Vs~n 723 (740)
T COG0574 704 SD------PHGA-----IFLVELGIDSVSLN 723 (740)
T ss_pred CC------cHHH-----HHHHHcCCCeEecC
Confidence 42 5555 56788999999976
No 77
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=75.39 E-value=8.7 Score=41.26 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=55.8
Q ss_pred cccEEEeecChHHHhcHHHHHHh----------cCeeEEcCCCCCCCCCh----hhHHHHHHHHHHHHHHcCCCEEE
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE----------ADGIMVARGDLGIEIPP----WKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~----------sDgimvaRgDLg~e~~~----~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
.+.||.=+|+.+.+.|.++|++. .=-||+|+.|=+.+-|. -.+..+|..+.+.|+++|.++-.
T Consensus 163 ~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qeVmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 163 EIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLRVFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred CcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeEEEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 57999999999999999999975 13699999999999987 66789999999999999998764
No 78
>PLN02591 tryptophan synthase
Probab=75.25 E-value=37 Score=33.27 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=58.5
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEE--cCCCCCCCCChhhHHHHHHHHHHHHHH-cCCCE
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMV--ARGDLGIEIPPWKVFLAQKQMIAKCNK-VGKPV 182 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimv--aRgDLg~e~~~~~v~~~qk~ii~~c~~-~gkpv 182 (398)
...++++. +.+.| +..|.-+--...-+++..|.+.++|.+= +| .|+.=....++...+..++.+++ .++|+
T Consensus 119 e~~~~~~~--~~~~g--l~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv 192 (250)
T PLN02591 119 ETEALRAE--AAKNG--IELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGARASVSGRVESLLQELKEVTDKPV 192 (250)
T ss_pred HHHHHHHH--HHHcC--CeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCCcCCchhHHHHHHHHHhcCCCce
Confidence 45555555 55444 4444444122234578999999877652 43 33332223445555677777776 48999
Q ss_pred EEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 183 ICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 183 i~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
++- -..=|+. ||+.+...|||++...
T Consensus 193 ~vG---------FGI~~~e---~v~~~~~~GADGvIVG 218 (250)
T PLN02591 193 AVG---------FGISKPE---HAKQIAGWGADGVIVG 218 (250)
T ss_pred EEe---------CCCCCHH---HHHHHHhcCCCEEEEC
Confidence 873 3333333 7777788899999985
No 79
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=74.69 E-value=26 Score=32.73 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=49.2
Q ss_pred CCCchhhhhHHHHHHhCCcEEEecCccC---CCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHH
Q psy259 197 RATRAEISDVANAVLDGADCVMLSGETA---KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIA 273 (398)
Q Consensus 197 ~PtraEvsDVanav~dG~D~vmLS~ETA---~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~a 273 (398)
.++..=+..+..|+.+|||.|...---. .|.| -+..+.+.+++..+.. ...+-.++ ....+ .+ .-..
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~-~~~~~ei~~v~~~~~g-~~lkvI~e------~~~l~-~~-~i~~ 135 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDY-EAVYEEIAAVVEACGG-APLKVILE------TGLLT-DE-EIIK 135 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCH-HHHHHHHHHHHHhcCC-CeEEEEEe------cCCCC-HH-HHHH
Confidence 4455556789999999999998853322 2333 4455666666655541 11000000 01111 23 3455
Q ss_pred HHHHHHhcCCcEEEEECCCchH
Q psy259 274 AVEAASKVFAGAIVVLTTTGTS 295 (398)
Q Consensus 274 av~~A~~~~A~aIIv~T~SG~t 295 (398)
+++++.+.+|+. +=|.||.+
T Consensus 136 a~ria~e~GaD~--IKTsTG~~ 155 (203)
T cd00959 136 ACEIAIEAGADF--IKTSTGFG 155 (203)
T ss_pred HHHHHHHhCCCE--EEcCCCCC
Confidence 677888999994 45667754
No 80
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=74.14 E-value=90 Score=31.43 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=48.9
Q ss_pred cccEEEeec--ChHHH-hcHHHHHHh-cCeeEEc----CCCCCCCCChhhHHHHHHHHHHHHHH-cCCCEEEeehhhHHh
Q psy259 122 HIKIIAKIE--NHQGV-KNLDEIIAE-ADGIMVA----RGDLGIEIPPWKVFLAQKQMIAKCNK-VGKPVICATQMLESM 192 (398)
Q Consensus 122 ~~~iiaKIE--~~~~v-~n~deIl~~-sDgimva----RgDLg~e~~~~~v~~~qk~ii~~c~~-~gkpvi~ATQmLeSM 192 (398)
++.+|++|= +.+.. +-...+-+. +|+|.+. +++-+.. +.. .+..-.++++..++ ..+||++
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~-g~~-~~~~~~eil~~v~~~~~iPV~v-------- 170 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDIS-GAE-VEQRYLDILRAVKSAVSIPVAV-------- 170 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCc-ccc-HHHHHHHHHHHHHhccCCcEEE--------
Confidence 478899882 22221 222222222 6999882 3332221 221 11222455555554 4799997
Q ss_pred hcCCCCCchhhhhHHHHH-HhCCcEEEecCcc
Q psy259 193 IKKPRATRAEISDVANAV-LDGADCVMLSGET 223 (398)
Q Consensus 193 i~~~~PtraEvsDVanav-~dG~D~vmLS~ET 223 (398)
+ -.|.-.++.+++.++ .-|+|+|.+++-+
T Consensus 171 -K-l~p~~~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 171 -K-LSPYFSNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred -E-eCCCchhHHHHHHHHHHcCCCeEEEECCc
Confidence 2 234444667787765 4799999997543
No 81
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=74.03 E-value=17 Score=37.61 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHH---h-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc--
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIA---E-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV-- 178 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~---~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~-- 178 (398)
+||.++|+. . +.+|+.| |+.+.++... . +|||.|+-- =|-.+.. .+.....+.+.....
T Consensus 218 ~~i~~l~~~--~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~H-GGrq~~~--~~a~~~~L~ei~~av~~ 282 (367)
T TIGR02708 218 RDIEEIAGY--S-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTNH-GGRQLDG--GPAAFDSLQEVAEAVDK 282 (367)
T ss_pred HHHHHHHHh--c-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCc-CccCCCC--CCcHHHHHHHHHHHhCC
Confidence 688888887 4 5789999 4544443333 3 799988732 1333211 110111122222223
Q ss_pred CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 179 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 179 gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
..|||.- ...-+ ..||..|+.-|||+||+..
T Consensus 283 ~i~vi~d---------GGIr~---g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 283 RVPIVFD---------SGVRR---GQHVFKALASGADLVALGR 313 (367)
T ss_pred CCcEEee---------CCcCC---HHHHHHHHHcCCCEEEEcH
Confidence 3788862 22222 4699999999999999964
No 82
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=72.98 E-value=68 Score=31.51 Aligned_cols=105 Identities=21% Similarity=0.254 Sum_probs=56.2
Q ss_pred cccEEEeecChHHHhcHHHHHH---h--cCeeEEcC---C---CCC-------CC----CChhhHHHHHHHHHHHHHHcC
Q psy259 122 HIKIIAKIENHQGVKNLDEIIA---E--ADGIMVAR---G---DLG-------IE----IPPWKVFLAQKQMIAKCNKVG 179 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~---~--sDgimvaR---g---DLg-------~e----~~~~~v~~~qk~ii~~c~~~g 179 (398)
++.|.+||-. .+++..++++ . +|+|.|.- | |+- .. .+...-+...+.+-+..+..+
T Consensus 157 ~~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 234 (300)
T TIGR01037 157 DVPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD 234 (300)
T ss_pred CCCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC
Confidence 5789999951 2233334433 2 79998741 1 111 00 111222233344444444568
Q ss_pred CCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 180 KPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 180 kpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
.|+|.. ...=| ..|+..++..|||+||+....- ..| .+..++.++.++.
T Consensus 235 ipvi~~---------GGI~s---~~da~~~l~~GAd~V~igr~~l--~~p----~~~~~i~~~l~~~ 283 (300)
T TIGR01037 235 IPIIGV---------GGITS---FEDALEFLMAGASAVQVGTAVY--YRG----FAFKKIIEGLIAF 283 (300)
T ss_pred CCEEEE---------CCCCC---HHHHHHHHHcCCCceeecHHHh--cCc----hHHHHHHHHHHHH
Confidence 999863 22222 2477888899999999964322 235 3445556555543
No 83
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=72.87 E-value=35 Score=35.54 Aligned_cols=170 Identities=15% Similarity=0.140 Sum_probs=94.3
Q ss_pred ccCCCCCCCcccccceeEEEeCCCCCCHHHHHHHHHhcccc--cc-cCCCC----CCCCC--CC----CCCC-----CCC
Q psy259 38 CGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETESNS--DE-CSEKP----RECPS--EP----EPPH-----CKE 99 (398)
Q Consensus 38 ~~L~i~~~~~~~r~t~Iictigp~~~~~e~l~~~i~~Gmnv--r~-~~~~~----~pgp~--~~----~~~k-----~~~ 99 (398)
..|.++-.-...++.=|+. -||.+.+.|.++++.++|.=- -. .+..+ .|.|. +. +... +-.
T Consensus 9 ~dLst~~~Gl~l~NP~i~A-Sgp~t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~ 87 (385)
T PLN02495 9 PDLSVTVNGLKMPNPFVIG-SGPPGTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQ 87 (385)
T ss_pred CcceEEECCEEcCCCcEeC-CccCCCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCccccccccccccccc
Confidence 3343333333455554555 599999999999999977432 11 22111 22331 11 0000 112
Q ss_pred Cc-cc----HH-HHHHHHHHhhchhcCCcccEEEee---cChHHHhcHHHHHHh--cCeeEEcCC--------CCCCCCC
Q psy259 100 PN-LY----ES-NVRLIEKLMATGEQGKHIKIIAKI---ENHQGVKNLDEIIAE--ADGIMVARG--------DLGIEIP 160 (398)
Q Consensus 100 ~~-~~----vd-dV~~ir~~~~l~~~~~~~~iiaKI---E~~~~v~n~deIl~~--sDgimvaRg--------DLg~e~~ 160 (398)
|. +| +| -+.+++++ ..+. .++.+|+-| .+.+....+-+.++. +|+|=+.=+ ++|..++
T Consensus 88 N~~~~s~~g~~~~l~~i~~~--k~~~-~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~g 164 (385)
T PLN02495 88 NIELISDRPFETMLAEFKQL--KEEY-PDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVG 164 (385)
T ss_pred CcccccccCHHHHHHHHHHH--HhhC-CCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhc
Confidence 22 11 22 23344444 2221 256788888 466666666555554 587765311 2232222
Q ss_pred hhhHHHHHHHHHHHHHHc-CCCEEEeehhhHHhhcCCCCCchhhhhHHH-HHHhCCcEEEecCcc
Q psy259 161 PWKVFLAQKQMIAKCNKV-GKPVICATQMLESMIKKPRATRAEISDVAN-AVLDGADCVMLSGET 223 (398)
Q Consensus 161 ~~~v~~~qk~ii~~c~~~-gkpvi~ATQmLeSMi~~~~PtraEvsDVan-av~dG~D~vmLS~ET 223 (398)
.-+..-+++++.+++. .+||++ +-.|.-.++.+++. +...|+|+|.|..=+
T Consensus 165 --q~~e~~~~i~~~Vk~~~~iPv~v----------KLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 165 --QDCDLLEEVCGWINAKATVPVWA----------KMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred --cCHHHHHHHHHHHHHhhcCceEE----------EeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 2356677777877764 799997 34566667888888 556789999997643
No 84
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.48 E-value=22 Score=33.76 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=54.0
Q ss_pred cChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHH-------------HHHHHHHHHHHHcCCCEEEeehhhHHhhcCC
Q psy259 130 ENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVF-------------LAQKQMIAKCNKVGKPVICATQMLESMIKKP 196 (398)
Q Consensus 130 E~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~-------------~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~ 196 (398)
-++++++.|+++.+.-+.++||=| .-+..+.+. .....+++.|+++|.|++
T Consensus 38 ~tp~a~~~I~~l~~~~~~~~vGAG---TVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~i------------- 101 (201)
T PRK06015 38 RTPAALDAIRAVAAEVEEAIVGAG---TILNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLL------------- 101 (201)
T ss_pred CCccHHHHHHHHHHHCCCCEEeeE---eCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEe-------------
Confidence 478888888888777777888866 122233332 234589999999999998
Q ss_pred CCCchhhhhHHHHHHhCCcEEEe
Q psy259 197 RATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 197 ~PtraEvsDVanav~dG~D~vmL 219 (398)
|--.=.|++..|...|+|.|=+
T Consensus 102 -PG~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 102 -PGAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred -CCCCCHHHHHHHHHCCCCEEEE
Confidence 4444456789999999999998
No 85
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=71.81 E-value=29 Score=33.45 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHhcccccc----cCCCCCCCCC-C-----CCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEeec-C
Q psy259 63 VAVDMLEKIIETESNSDE----CSEKPRECPS-E-----PEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIE-N 131 (398)
Q Consensus 63 ~~~e~l~~~i~~Gmnvr~----~~~~~~pgp~-~-----~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE-~ 131 (398)
...+.++.|.++|.+.-+ ||....-||. . .+. .+..--.+.+-+.++|+. . +++++.+.. |
T Consensus 15 ~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~-~g~~~~~~~~~~~~vr~~--~-----~~pv~lm~y~n 86 (242)
T cd04724 15 TTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALA-NGVTLKDVLELVKEIRKK--N-----TIPIVLMGYYN 86 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHhhc--C-----CCCEEEEEecC
Confidence 345668889999998865 3331011662 1 111 111111223344555543 1 455666555 4
Q ss_pred h---HHHhcH-HHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 132 H---QGVKNL-DEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 132 ~---~~v~n~-deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
+ -|++++ ++..+. +||+++. || |.| ..+.++++|+++|...+++
T Consensus 87 ~~~~~G~~~fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 87 PILQYGLERFLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHHHhCHHHHHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEEE
Confidence 3 244554 444444 7999997 66 444 4578999999999877763
No 86
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=71.74 E-value=20 Score=39.20 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=103.4
Q ss_pred CHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEeecC--hHHHhcHHHH
Q psy259 64 AVDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIEN--HQGVKNLDEI 141 (398)
Q Consensus 64 ~~e~l~~~i~~Gmnvr~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~--~~~v~n~deI 141 (398)
+++.+.+|.++|..+.+++-. + .--...+.+||+- |...|.++.++|-|-= .-|+ ..
T Consensus 47 tv~Qi~~L~~aGceiVRvtvp---~------------~~~A~al~~I~~~--L~~~g~~iPLVADIHF~~~~A~---~a- 105 (606)
T PRK00694 47 TVRQICALQEWGCDIVRVTVQ---G------------LKEAQACEHIKER--LIQQGISIPLVADIHFFPQAAM---HV- 105 (606)
T ss_pred HHHHHHHHHHcCCCEEEEcCC---C------------HHHHHhHHHHHHH--HhccCCCCCEEeecCCChHHHH---HH-
Confidence 467899999999877553321 1 1112235677777 8888999999998832 1222 22
Q ss_pred HHhcCeeEEcCCCCCC--------CC-------ChhhHHHHHHHHHHHHHHcCCCEEEeeh-------hhHHhhcCCCCC
Q psy259 142 IAEADGIMVARGDLGI--------EI-------PPWKVFLAQKQMIAKCNKVGKPVICATQ-------MLESMIKKPRAT 199 (398)
Q Consensus 142 l~~sDgimvaRgDLg~--------e~-------~~~~v~~~qk~ii~~c~~~gkpvi~ATQ-------mLeSMi~~~~Pt 199 (398)
++.+|.|-|.||.++- ++ ..+++..--+.++.+|+++|+|+=+-+. +|+.. -+|
T Consensus 106 ~~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~y----G~t 181 (606)
T PRK00694 106 ADFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRY----GDT 181 (606)
T ss_pred HHhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh----CCC
Confidence 2338999999999986 11 2356677778999999999999876553 33321 122
Q ss_pred chh-----hhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 200 RAE-----ISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 200 raE-----vsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
..= ..-+.-+-..|.+=+.+| .+-..|...|+.-+.+++..++.-|+
T Consensus 182 pegmVeSAle~~~i~e~~~f~diviS---~KsSnv~~mi~AyrlLa~~~d~eg~~ 233 (606)
T PRK00694 182 IEGMVYSALEYIEVCEKLDYRDVVFS---MKSSNPKVMVAAYRQLAKDLDARGWL 233 (606)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHHHHHHHHHHHHHhhccCCC
Confidence 110 012223345688889998 66778888888888888877754443
No 87
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=71.58 E-value=8.1 Score=37.67 Aligned_cols=171 Identities=21% Similarity=0.261 Sum_probs=83.8
Q ss_pred EEEeecChHHHhcHHHHHHh-----cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHH-HcCCCEEEeehhhHHhhcCCCC
Q psy259 125 IIAKIENHQGVKNLDEIIAE-----ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCN-KVGKPVICATQMLESMIKKPRA 198 (398)
Q Consensus 125 iiaKIE~~~~v~n~deIl~~-----sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~-~~gkpvi~ATQmLeSMi~~~~P 198 (398)
=+.||.=. ..++.+||++. .|+|||| |-+|++. +++ .+.+++++ ..+.|+|.
T Consensus 18 H~tliDP~-k~~~~~ei~~~~~~~GTDaImIG-GS~gvt~--~~~----~~~v~~ik~~~~lPvil-------------- 75 (240)
T COG1646 18 HLTLIDPD-KTEEADEIAEAAAEAGTDAIMIG-GSDGVTE--ENV----DNVVEAIKERTDLPVIL-------------- 75 (240)
T ss_pred EEEEeCcc-cccccHHHHHHHHHcCCCEEEEC-CcccccH--HHH----HHHHHHHHhhcCCCEEE--------------
Confidence 34555322 22556666554 7999999 7666653 333 34667777 89999997
Q ss_pred CchhhhhHHHHHHhCCcEEEe-----cCccC--CCCChHHHHHHHHHHHHHH--Hhhhh--hhHHHHHHhhcCCCCCChH
Q psy259 199 TRAEISDVANAVLDGADCVML-----SGETA--KGDYPVECVRAMHNTCKEA--EAAIW--HTKLLTELKSMLPLPIDSA 267 (398)
Q Consensus 199 traEvsDVanav~dG~D~vmL-----S~ETA--~G~yP~eaV~~m~~I~~~a--E~~~~--~~~~~~~~~~~~~~~~~~~ 267 (398)
|.++..+ +..++|+++. |+.+. .| -.+++.+...++..+. |.++- ....--......+.+.+..
T Consensus 76 ---fP~~~~~-is~~aDavff~svLNS~n~~~i~g-aq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~ 150 (240)
T COG1646 76 ---FPGSPSG-ISPYADAVFFPSVLNSDNPYWIVG-AQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKE 150 (240)
T ss_pred ---ecCChhc-cCccCCeEEEEEEecCCCcccccc-hhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcH
Confidence 4444444 4469999875 33322 23 2455555555554221 11110 0000000111122344444
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECCCchH----HHHHHhhCCCCCEEE--EeCChhhhhhccc
Q psy259 268 HSVAIAAVEAASKVFAGAIVVLTTTGTS----ARLISKYRPRCPIIS--VTRFPQVARQLHL 323 (398)
Q Consensus 268 ~~ia~aav~~A~~~~A~aIIv~T~SG~t----A~~iSkyRP~~PIIA--VT~n~~taRqL~L 323 (398)
+..| ++.-++.-++-..+-+---||.. ...+|+.....|+|. --+++++||++..
T Consensus 151 ~iaa-~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~ 211 (240)
T COG1646 151 DIAA-YYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAE 211 (240)
T ss_pred HHHH-HHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHH
Confidence 4333 33334444566654443333322 245566555554442 2355555555544
No 88
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=71.41 E-value=63 Score=32.57 Aligned_cols=108 Identities=22% Similarity=0.307 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCC--ChhhHHHHHHHHHHHHHHcCC
Q psy259 104 ESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEI--PPWKVFLAQKQMIAKCNKVGK 180 (398)
Q Consensus 104 vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~--~~~~v~~~qk~ii~~c~~~gk 180 (398)
.+||.++|+. . +++||.|+-.-- +...+.+.++ +|-| | ..+. |..++....| ++.+.
T Consensus 63 p~~I~aIk~~--V-----~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrpad~~~~~~K------~~f~~ 122 (293)
T PRK04180 63 PKMIEEIMDA--V-----SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTPADEEYHIDK------WDFTV 122 (293)
T ss_pred HHHHHHHHHh--C-----CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCchHHHHHHHH------HHcCC
Confidence 5588888887 4 678888764321 4444444444 6776 4 3333 3333222222 13478
Q ss_pred CEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 181 PVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 181 pvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
|+.+- .- .+.+.-+++..|+|.|--+||...|+ -+|||+-|+.|-.+.-.-
T Consensus 123 ~fmad-----------~~---~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L 173 (293)
T PRK04180 123 PFVCG-----------AR---NLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRL 173 (293)
T ss_pred CEEcc-----------CC---CHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHH
Confidence 88862 11 23345678999999999999999998 589999999998877653
No 89
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=70.61 E-value=63 Score=33.12 Aligned_cols=91 Identities=22% Similarity=0.339 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCCCCCCCh-hhHHHHHHHHHHHHHHc-
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDLGIEIPP-WKVFLAQKQMIAKCNKV- 178 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDLg~e~~~-~~v~~~qk~ii~~c~~~- 178 (398)
+++.++|+. . +.+||.| ++.+.++...+ +|+|.|. |--|..+.. ..-..+...+.+.....
T Consensus 203 ~~i~~l~~~--~-----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~~ 269 (344)
T cd02922 203 DDIKWLRKH--T-----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEVF 269 (344)
T ss_pred HHHHHHHHh--c-----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 477777776 3 5688888 44556655554 7999887 433444311 11122333444433333
Q ss_pred -CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 179 -GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 179 -gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
..|+|.+.-+ . --.||+.|+.-|||+|++.
T Consensus 270 ~~~~vi~~GGI----------r--~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 270 DKIEVYVDGGV----------R--RGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCceEEEeCCC----------C--CHHHHHHHHHcCCCEEEEC
Confidence 3688864221 1 2479999999999999985
No 90
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=70.50 E-value=25 Score=38.71 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=93.6
Q ss_pred CHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHH
Q psy259 64 AVDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIA 143 (398)
Q Consensus 64 ~~e~l~~~i~~Gmnvr~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~ 143 (398)
+++.+.+|.++|..+.+++-. | .--...+.+||+- +...|.++.++|-|-=---+ .+..+ +
T Consensus 43 tv~Qi~~l~~aGceiVRvtv~---~------------~~~a~~l~~I~~~--l~~~G~~iPLVADIHF~~~~-A~~a~-~ 103 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVRLTTQ---G------------VREAENLMNINIG--LRSQGYMVPLVADVHFNPKV-ADVAA-Q 103 (611)
T ss_pred HHHHHHHHHHcCCCEEEEcCC---C------------HHHHHhHHHHHHH--HhhcCCCCCEEEecCCCcHH-HHHHH-H
Confidence 467899999999887553331 1 1112235677777 77789999999987422212 12222 3
Q ss_pred hcCeeEEcCCCCCCC---C------------ChhhHHHHHHHHHHHHHHcCCCEEEeeh-------hhHHhhcCCCCCc-
Q psy259 144 EADGIMVARGDLGIE---I------------PPWKVFLAQKQMIAKCNKVGKPVICATQ-------MLESMIKKPRATR- 200 (398)
Q Consensus 144 ~sDgimvaRgDLg~e---~------------~~~~v~~~qk~ii~~c~~~gkpvi~ATQ-------mLeSMi~~~~Ptr- 200 (398)
.+|.|-|.||.++-. + ..+++...-+.++++|+++|+|+=+-+. +|+.. -..|.-
T Consensus 104 ~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y--g~tpe~m 181 (611)
T PRK02048 104 YAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY--GDTPEGM 181 (611)
T ss_pred hhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh--CCChHHH
Confidence 499999999999763 1 1255666777899999999999876553 33321 111100
Q ss_pred hh--hhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHH
Q psy259 201 AE--ISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 244 (398)
Q Consensus 201 aE--vsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE 244 (398)
.| ..-+--+-..|.+=+.+|--++.- .+.|...+.++....
T Consensus 182 VeSAle~~~i~e~~~f~diviS~KsS~~---~~~V~AyRlLa~~l~ 224 (611)
T PRK02048 182 VESCMEFLRICVEEHFTDVVISIKASNT---VVMVRTVRLLVAVME 224 (611)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEeCCc---HHHHHHHHHHHHHHH
Confidence 00 011222344677888888554444 445555555555443
No 91
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=70.10 E-value=31 Score=35.67 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCC
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGK 180 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gk 180 (398)
+||..||+. . +.++|.| +|-+.++...+ +|||.|+ +-=|-.+ +..+..-..+.+.++..+.
T Consensus 226 ~~i~~ir~~--~-----~~pviiK-----gV~~~eda~~a~~~G~d~I~VS-nhGGrql--d~~~~~~~~L~ei~~~~~~ 290 (361)
T cd04736 226 QDLRWLRDL--W-----PHKLLVK-----GIVTAEDAKRCIELGADGVILS-NHGGRQL--DDAIAPIEALAEIVAATYK 290 (361)
T ss_pred HHHHHHHHh--C-----CCCEEEe-----cCCCHHHHHHHHHCCcCEEEEC-CCCcCCC--cCCccHHHHHHHHHHHhCC
Confidence 488899888 5 2356665 23344444443 8999985 1112222 1111111122222333468
Q ss_pred CEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 181 PVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 181 pvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
|||+ ....-+ -.||..|+..|||+||+..
T Consensus 291 ~vi~---------dGGIr~---g~Dv~KALaLGA~aV~iGr 319 (361)
T cd04736 291 PVLI---------DSGIRR---GSDIVKALALGANAVLLGR 319 (361)
T ss_pred eEEE---------eCCCCC---HHHHHHHHHcCCCEEEECH
Confidence 9886 223332 3699999999999999953
No 92
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=69.69 E-value=36 Score=32.10 Aligned_cols=81 Identities=19% Similarity=0.164 Sum_probs=49.9
Q ss_pred hcHHHHHHh-cCee--EEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhh-HHHHHH
Q psy259 136 KNLDEIIAE-ADGI--MVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISD-VANAVL 211 (398)
Q Consensus 136 ~n~deIl~~-sDgi--mvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsD-Vanav~ 211 (398)
..+++.++. +|+| ++--|++ +..++...-+++.+.|++.|.|+|+=+....-...+ .-+..++.- +..|..
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~----~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~-~~~~~~i~~~~~~a~~ 154 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSE----EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKN-EKDPDLIAYAARIGAE 154 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCc----hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccC-ccCHHHHHHHHHHHHH
Confidence 346677776 7877 5555655 246677778899999999999999822110000000 012233333 445778
Q ss_pred hCCcEEEecC
Q psy259 212 DGADCVMLSG 221 (398)
Q Consensus 212 dG~D~vmLS~ 221 (398)
.|+|.|-++.
T Consensus 155 ~GaD~Ik~~~ 164 (235)
T cd00958 155 LGADIVKTKY 164 (235)
T ss_pred HCCCEEEecC
Confidence 8999999964
No 93
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=69.60 E-value=19 Score=30.96 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=64.8
Q ss_pred eCCCCCCHHHHHHHHHhccc-ccccCCCC-CC---CCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEeecCh
Q psy259 58 IGPASVAVDMLEKIIETESN-SDECSEKP-RE---CPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIENH 132 (398)
Q Consensus 58 igp~~~~~e~l~~~i~~Gmn-vr~~~~~~-~p---gp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~~ 132 (398)
+|--.---+.++.|..+|.. +.-+-.+. -| +..-.|.+++-... =+..+++. |.+.+..+.+.+.-+..
T Consensus 8 iG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~----Ka~~~~~~--l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 8 IGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKN----KAEAAKER--LQEINPDVEVEAIPEKI 81 (135)
T ss_dssp ESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSB----HHHHHHHH--HHHHSTTSEEEEEESHC
T ss_pred ECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhH----HHHHHHHH--HHHhcCceeeeeeeccc
Confidence 56555567789999999973 21111110 00 00001111111110 23566666 66667777777644443
Q ss_pred HHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 133 QGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 133 ~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
.-+++++.++-.|.|+.+-.+ +.....+-+.|++.|+|+|.+
T Consensus 82 -~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~ 123 (135)
T PF00899_consen 82 -DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDA 123 (135)
T ss_dssp -SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEE
T ss_pred -ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 447888999889999888554 335556788999999999975
No 94
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=69.58 E-value=76 Score=30.70 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=59.0
Q ss_pred hHHHhcH-HHHHHh-cCeeEEcCCCCC--CCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHH
Q psy259 132 HQGVKNL-DEIIAE-ADGIMVARGDLG--IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVA 207 (398)
Q Consensus 132 ~~~v~n~-deIl~~-sDgimvaRgDLg--~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVa 207 (398)
.++++++ +-.++. .|||++. |--| ..+..++-..+.+...+.++ -..||++- -..++-.|.-+-+
T Consensus 17 ~~~~~~~i~~l~~~Gv~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~g---------v~~~~~~~~i~~a 85 (281)
T cd00408 17 LDALRRLVEFLIEAGVDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAG---------VGANSTREAIELA 85 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEe---------cCCccHHHHHHHH
Confidence 3455443 444443 8999987 5332 22233433333334444332 24677763 3455566777777
Q ss_pred HHHHh-CCcEEEecCccCCCCChHHHHHHHHHHHHHHH
Q psy259 208 NAVLD-GADCVMLSGETAKGDYPVECVRAMHNTCKEAE 244 (398)
Q Consensus 208 nav~d-G~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE 244 (398)
....+ |+|++|+..-.-...-+-+.++....|+....
T Consensus 86 ~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~ 123 (281)
T cd00408 86 RHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred HHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 66555 99999997654333345778888888887644
No 95
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=68.62 E-value=56 Score=32.69 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=78.5
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
..+|.+ ..+.+-.+.|.-....- .++.+.+-++. .+-||+.-. ++|.++....-+++.+.|+..|.+|=..-
T Consensus 65 ~~~~~~--a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S----~l~~eEni~~t~~v~~~a~~~gv~vE~El 137 (293)
T PRK07315 65 NLIENL--VESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS----HLPVEENLKLAKEVVEKAHAKGISVEAEV 137 (293)
T ss_pred HHHHHH--HHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 445555 44444467888899886 55556555555 799999855 45889988999999999999999884332
Q ss_pred hhh---HHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChH
Q psy259 187 QML---ESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 230 (398)
Q Consensus 187 QmL---eSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~ 230 (398)
--+ |-++..... .-...++..++..|+|++-+|=-|.-|.||-
T Consensus 138 G~i~g~ed~~~g~s~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t 183 (293)
T PRK07315 138 GTIGGEEDGIIGKGE-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPE 183 (293)
T ss_pred CcccCcCccccCccC-CCCHHHHHHHHHcCCCEEeeccccccccCCC
Confidence 222 112111111 1234456778889999999998889888874
No 96
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=68.60 E-value=56 Score=36.71 Aligned_cols=148 Identities=18% Similarity=0.169 Sum_probs=98.7
Q ss_pred CHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEeecC--hHHHhcHHHH
Q psy259 64 AVDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIEN--HQGVKNLDEI 141 (398)
Q Consensus 64 ~~e~l~~~i~~Gmnvr~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~--~~~v~n~deI 141 (398)
+++.+++|.++|..+.+++-. | .+ -.+.+.+||+- |...|.++.++|-|-= .-|+ +-
T Consensus 112 tv~Qi~~l~~aGceiVRvtv~---~------~~------~A~al~~I~~~--L~~~g~~iPLVADIHF~~~~Al----~a 170 (733)
T PLN02925 112 TVDQVMRIADKGADIVRITVQ---G------KK------EADACFEIKNT--LVQKGYNIPLVADIHFAPSVAL----RV 170 (733)
T ss_pred HHHHHHHHHHcCCCEEEEcCC---C------HH------HHHhHHHHHHH--HhhcCCCCCEEEecCCCHHHHH----HH
Confidence 467788899999777553321 1 01 11234677776 7778889999998732 2222 23
Q ss_pred HHhcCeeEEcCCCCCCCC---------------ChhhHHHHHHHHHHHHHHcCCCEEEeeh------------------h
Q psy259 142 IAEADGIMVARGDLGIEI---------------PPWKVFLAQKQMIAKCNKVGKPVICATQ------------------M 188 (398)
Q Consensus 142 l~~sDgimvaRgDLg~e~---------------~~~~v~~~qk~ii~~c~~~gkpvi~ATQ------------------m 188 (398)
++.+|.|-|.||.++-.- ..+++...-..++.+|+++|+|+=+-|. |
T Consensus 171 ~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gm 250 (733)
T PLN02925 171 AECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGM 250 (733)
T ss_pred HHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHH
Confidence 344999999999998762 1245555556799999999999866542 3
Q ss_pred hHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHh
Q psy259 189 LESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEA 245 (398)
Q Consensus 189 LeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~ 245 (398)
.||-.+ -+.-+-..|.+=+.+| .+-..|...|...+.++.+.+.
T Consensus 251 VeSAle----------~~~i~e~~~f~diviS---~KsSn~~~~V~AyR~La~~L~~ 294 (733)
T PLN02925 251 VESAFE----------FARICRKLDYHNFVFS---MKASNPVVMVQAYRLLVAEMYV 294 (733)
T ss_pred HHHHHH----------HHHHHHHCCCCcEEEE---EEcCChHHHHHHHHHHHHHHHh
Confidence 333221 1223345688999998 6677788888888888887654
No 97
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=68.23 E-value=88 Score=32.34 Aligned_cols=89 Identities=25% Similarity=0.312 Sum_probs=62.6
Q ss_pred cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCch
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRA 201 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptra 201 (398)
.+.+++-+-+.+.++-+.+ .+|.+-|+-+++- |-.+++.+-+.||||++.|-| .+|-.
T Consensus 165 Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~-----------n~~LL~~va~t~kPVllk~G~--------~~t~e 222 (352)
T PRK13396 165 GLGIITEVMDAADLEKIAE---VADVIQVGARNMQ-----------NFSLLKKVGAQDKPVLLKRGM--------AATID 222 (352)
T ss_pred CCcEEEeeCCHHHHHHHHh---hCCeEEECccccc-----------CHHHHHHHHccCCeEEEeCCC--------CCCHH
Confidence 5889999988877766655 4899999977652 233577888899999985443 34777
Q ss_pred hhhhHHHHHHh-CCcEEEecCc---cCCCCChHHH
Q psy259 202 EISDVANAVLD-GADCVMLSGE---TAKGDYPVEC 232 (398)
Q Consensus 202 EvsDVanav~d-G~D~vmLS~E---TA~G~yP~ea 232 (398)
|+-..+..+.. |.+-|+|..- |-...||.+.
T Consensus 223 e~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~ 257 (352)
T PRK13396 223 EWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNT 257 (352)
T ss_pred HHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCC
Confidence 88777887765 7766777633 3334677433
No 98
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=67.84 E-value=32 Score=31.69 Aligned_cols=106 Identities=24% Similarity=0.213 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEE-eecChHHHhcHHHH
Q psy259 63 VAVDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIA-KIENHQGVKNLDEI 141 (398)
Q Consensus 63 ~~~e~l~~~i~~Gmnvr~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iia-KIE~~~~v~n~deI 141 (398)
.-.+.++.+++.|.+.-++..+ .. + +.+.++.+++. .. +..|-+ -|=+ -+++++.
T Consensus 17 ~~~~~~~~l~~~G~~~vev~~~------------~~-~--~~~~i~~l~~~--~~----~~~iGag~v~~---~~~~~~a 72 (190)
T cd00452 17 DALALAEALIEGGIRAIEITLR------------TP-G--ALEAIRALRKE--FP----EALIGAGTVLT---PEQADAA 72 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC------------Ch-h--HHHHHHHHHHH--CC----CCEEEEEeCCC---HHHHHHH
Confidence 3346678888888665443322 11 1 33345555554 32 233332 2222 2456677
Q ss_pred HHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 142 IAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 142 l~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
++. +|+|+..-.| ..+++.|++.|.|++. .-.-.+++..|...|+|.+.+-
T Consensus 73 ~~~Ga~~i~~p~~~--------------~~~~~~~~~~~~~~i~--------------gv~t~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 73 IAAGAQFIVSPGLD--------------PEVVKAANRAGIPLLP--------------GVATPTEIMQALELGADIVKLF 124 (190)
T ss_pred HHcCCCEEEcCCCC--------------HHHHHHHHHcCCcEEC--------------CcCCHHHHHHHHHCCCCEEEEc
Confidence 666 8999754222 3578889999998874 2223356788899999999983
No 99
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=67.69 E-value=24 Score=34.76 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=26.5
Q ss_pred HHHHhCCcEEEecCccCCCCCh------HHHHHHHHHHHHHHHhh
Q psy259 208 NAVLDGADCVMLSGETAKGDYP------VECVRAMHNTCKEAEAA 246 (398)
Q Consensus 208 nav~dG~D~vmLS~ETA~G~yP------~eaV~~m~~I~~~aE~~ 246 (398)
--..-|+|+||+..+ |+.| -|+|..|.+|+.+.=..
T Consensus 36 ~l~~~GvD~viveN~---~d~P~~~~~~p~tva~m~~i~~~v~~~ 77 (257)
T TIGR00259 36 ALEEGGVDAVMFENF---FDAPFLKEVDPETVAAMAVIAGQLKSD 77 (257)
T ss_pred HHHhCCCCEEEEecC---CCCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 334459999999755 4434 58899999999877554
No 100
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=67.18 E-value=76 Score=32.51 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=61.2
Q ss_pred cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCch
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRA 201 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptra 201 (398)
.+.+++-+-+.+.++-+. +.+|.+-|+-.++ .+-.+++.+-+.||||++.|-|- .|-.
T Consensus 157 Gl~v~tev~d~~~~~~l~---~~vd~lqIgAr~~-----------~N~~LL~~va~~~kPViLk~G~~--------~ti~ 214 (335)
T PRK08673 157 GLPIVTEVMDPRDVELVA---EYVDILQIGARNM-----------QNFDLLKEVGKTNKPVLLKRGMS--------ATIE 214 (335)
T ss_pred CCcEEEeeCCHHHHHHHH---HhCCeEEECcccc-----------cCHHHHHHHHcCCCcEEEeCCCC--------CCHH
Confidence 588999888887766665 4589999996655 22346677778999999965543 3445
Q ss_pred hhhhHHHHHH-hCCcEEEecC--ccCCCCChHHHHHH
Q psy259 202 EISDVANAVL-DGADCVMLSG--ETAKGDYPVECVRA 235 (398)
Q Consensus 202 EvsDVanav~-dG~D~vmLS~--ETA~G~yP~eaV~~ 235 (398)
|+-..+..+. .|.+-++|.- =+..-.||.+.+..
T Consensus 215 E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl 251 (335)
T PRK08673 215 EWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDL 251 (335)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhH
Confidence 6666666664 6776666642 23444677665543
No 101
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=67.14 E-value=40 Score=35.60 Aligned_cols=112 Identities=10% Similarity=0.127 Sum_probs=70.8
Q ss_pred EEEeCCCCCCHHHHHHHHHhcccc-cccCCCCCCCCCCCCCCCCCCCcccHH--H-----HHHHHHHhhchhcCCcccEE
Q psy259 55 ICTIGPASVAVDMLEKIIETESNS-DECSEKPRECPSEPEPPHCKEPNLYES--N-----VRLIEKLMATGEQGKHIKII 126 (398)
Q Consensus 55 ictigp~~~~~e~l~~~i~~Gmnv-r~~~~~~~pgp~~~~~~k~~~~~~~vd--d-----V~~ir~~~~l~~~~~~~~ii 126 (398)
||=+|-..--.|+++.|+.+|..- .-.... ..++.+-..-.+++ | ...+++. |.+.+.++.+-
T Consensus 23 VlliG~gglGsEilKNLvL~GIg~~tIvD~~-------~V~~sDL~~nFfl~~~diGk~kA~~~~~~--L~eLNp~V~i~ 93 (425)
T cd01493 23 VCLLNATATGTEILKNLVLPGIGSFTIVDGS-------KVDEEDLGNNFFLDASSLGKSRAEATCEL--LQELNPDVNGS 93 (425)
T ss_pred EEEEcCcHHHHHHHHHHHHcCCCeEEEECCC-------cCchhhccccccCChhhcCcHHHHHHHHH--HHHHCCCCEEE
Confidence 455777778899999999999521 111111 11222222223332 2 3455666 77778889888
Q ss_pred EeecChHHH-hcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 127 AKIENHQGV-KNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 127 aKIE~~~~v-~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
+-.|+.+.+ ++.++++.-.|.|+.+.. +.. ....+.+.|+++++|+|.+
T Consensus 94 ~~~e~~~~ll~~~~~f~~~fdiVI~t~~------~~~----~~~~L~~~c~~~~iPlI~~ 143 (425)
T cd01493 94 AVEESPEALLDNDPSFFSQFTVVIATNL------PES----TLLRLADVLWSANIPLLYV 143 (425)
T ss_pred EEecccchhhhhHHHHhcCCCEEEECCC------CHH----HHHHHHHHHHHcCCCEEEE
Confidence 888888764 455788888898876522 222 2334788999999999854
No 102
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=67.13 E-value=38 Score=35.13 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=62.2
Q ss_pred cccEEEeecChHHHhcHHHHHHh-----cCeeEE-----cCCC-----------C------CCCCChhhHHHHHHHHHHH
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-----ADGIMV-----ARGD-----------L------GIEIPPWKVFLAQKQMIAK 174 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-----sDgimv-----aRgD-----------L------g~e~~~~~v~~~qk~ii~~ 174 (398)
++.|++||= + .+.++.+|++. +|||.+ +|-. | |-=-+...-+...+.|-..
T Consensus 168 ~~Pv~vKl~-p-~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~ 245 (420)
T PRK08318 168 RLPVIVKLT-P-NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEI 245 (420)
T ss_pred CCcEEEEcC-C-CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHH
Confidence 589999994 3 35566677663 799882 2211 1 1111334445566666555
Q ss_pred HHHc---CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhh
Q psy259 175 CNKV---GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAI 247 (398)
Q Consensus 175 c~~~---gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~ 247 (398)
.+.. ..|+|-.. ..-+ ..|+...++-|||+||+.. +.-..+- ..+.+|.++.+..+
T Consensus 246 ~~~~~~~~ipIig~G---------GI~s---~~da~e~i~aGA~~Vqi~t--a~~~~gp---~ii~~I~~~L~~~l 304 (420)
T PRK08318 246 ARDPETRGLPISGIG---------GIET---WRDAAEFILLGAGTVQVCT--AAMQYGF---RIVEDMISGLSHYM 304 (420)
T ss_pred HhccccCCCCEEeec---------CcCC---HHHHHHHHHhCCChheeee--eeccCCc---hhHHHHHHHHHHHH
Confidence 5554 46777522 2222 3589999999999999953 3332222 34556666666543
No 103
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=67.09 E-value=1.1e+02 Score=30.86 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHH-cCCC
Q psy259 104 ESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNK-VGKP 181 (398)
Q Consensus 104 vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~-~gkp 181 (398)
++||++||+. . +++||+++-.-- +...+++.++ +|-| | ..+-+-+ + ..++...+. .+.|
T Consensus 54 ~~~I~~Ik~~--V-----~iPVIGi~K~~~-~~Ea~~L~eaGvDiI-----D-aT~r~rP-~----~~~~~~iK~~~~~l 114 (283)
T cd04727 54 PKMIKEIMDA--V-----SIPVMAKVRIGH-FVEAQILEALGVDMI-----D-ESEVLTP-A----DEEHHIDKHKFKVP 114 (283)
T ss_pred HHHHHHHHHh--C-----CCCeEEeeehhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-H----HHHHHHHHHHcCCc
Confidence 5588888877 4 688999775432 5566666666 7777 4 4443322 1 333444443 3788
Q ss_pred EEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 182 VICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 182 vi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
+.+ ..- .+.+.-+|+..|+|+|=-++|--.| +-.|+|+-+++|-.++...
T Consensus 115 ~MA-----------D~s---tleEal~a~~~Gad~I~TTl~gyT~-~~~~~~~~~~~i~~~i~~~ 164 (283)
T cd04727 115 FVC-----------GAR---NLGEALRRISEGAAMIRTKGEAGTG-NVVEAVRHMRAVNGEIRKL 164 (283)
T ss_pred EEc-----------cCC---CHHHHHHHHHCCCCEEEecCCCCCC-cHHHHHHHHHHHHHHHHHH
Confidence 775 122 2345567899999999888886666 6789999999998888754
No 104
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=66.40 E-value=12 Score=36.14 Aligned_cols=60 Identities=28% Similarity=0.390 Sum_probs=38.2
Q ss_pred hcHHHHHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhC
Q psy259 136 KNLDEIIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDG 213 (398)
Q Consensus 136 ~n~deIl~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG 213 (398)
+.++++++. .|+|||| |=+++..-.+++....|+ ..+ ..|++. .|... +.+..|
T Consensus 15 ~~~~~~~~~~gtdai~vG-GS~~v~~~~~~~~~~ik~----~~~-~~Pvil------------fp~~~------~~i~~~ 70 (219)
T cd02812 15 EEIAKLAEESGTDAIMVG-GSDGVSSTLDNVVRLIKR----IRR-PVPVIL------------FPSNP------EAVSPG 70 (219)
T ss_pred HHHHHHHHhcCCCEEEEC-CccchhhhHHHHHHHHHH----hcC-CCCEEE------------eCCCc------cccCcC
Confidence 346777775 5999999 767665223333333333 233 799997 45554 344689
Q ss_pred CcEEEe
Q psy259 214 ADCVML 219 (398)
Q Consensus 214 ~D~vmL 219 (398)
+|+++.
T Consensus 71 aDa~l~ 76 (219)
T cd02812 71 ADAYLF 76 (219)
T ss_pred CCEEEE
Confidence 999987
No 105
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=66.19 E-value=39 Score=34.01 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=54.1
Q ss_pred HHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-----cCeeEEc-CC----C-----CCCC---C-ChhhHHHH
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-----ADGIMVA-RG----D-----LGIE---I-PPWKVFLA 167 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-----sDgimva-Rg----D-----Lg~e---~-~~~~v~~~ 167 (398)
++.+|+. ..+.++++.|++|+--....+++.++++. +|||-+. |- + +... + +...-+.+
T Consensus 189 v~av~~~--~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~ 266 (327)
T cd04738 189 LTAVKEE--RNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERS 266 (327)
T ss_pred HHHHHHH--HhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHH
Confidence 3555555 44335568999999532222244444432 6988753 20 0 0000 1 12222334
Q ss_pred HHHHHHHHHHc--CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 168 QKQMIAKCNKV--GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 168 qk~ii~~c~~~--gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
.+.+-...+.. ..|+|.. ...-| ..|+...+..|||+||+..
T Consensus 267 l~~v~~l~~~~~~~ipIi~~---------GGI~t---~~da~e~l~aGAd~V~vg~ 310 (327)
T cd04738 267 TEVLRELYKLTGGKIPIIGV---------GGISS---GEDAYEKIRAGASLVQLYT 310 (327)
T ss_pred HHHHHHHHHHhCCCCcEEEE---------CCCCC---HHHHHHHHHcCCCHHhccH
Confidence 44444444444 4788853 22223 3588899999999999964
No 106
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=66.09 E-value=22 Score=41.13 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhchhcC--------CcccEEEeecChHHHhcHHHHHHh--c--------------CeeEEcCCCCCCCCC
Q psy259 105 SNVRLIEKLMATGEQG--------KHIKIIAKIENHQGVKNLDEIIAE--A--------------DGIMVARGDLGIEIP 160 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~--------~~~~iiaKIE~~~~v~n~deIl~~--s--------------DgimvaRgDLg~e~~ 160 (398)
.||.++--+ +.+.| ..+.||.=+||.+.++|.++|++. + =-||+|+.|=+-+-|
T Consensus 499 sdvL~v~~l--~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVMlGySDS~Kd~G 576 (911)
T PRK00009 499 SDVLEVLLL--LKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVMLGYSDSNKDGG 576 (911)
T ss_pred HHHHHHHHH--HHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEEeeccccccccc
Confidence 388888777 55544 267999999999999999999986 1 259999999999988
Q ss_pred h----hhHHHHHHHHHHHHHHcCCCEEE
Q psy259 161 P----WKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 161 ~----~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
. -.+..+|+.+.+.|+++|.++..
T Consensus 577 ~las~w~l~~Aq~~L~~~~~~~gv~l~~ 604 (911)
T PRK00009 577 FLASNWALYRAQEALVELAEKHGVRLTL 604 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 6 66889999999999999998876
No 107
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=65.46 E-value=18 Score=37.33 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=60.8
Q ss_pred CHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEeec--ChHHHhcHHHH
Q psy259 64 AVDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIE--NHQGVKNLDEI 141 (398)
Q Consensus 64 ~~e~l~~~i~~Gmnvr~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE--~~~~v~n~deI 141 (398)
+++.|++|-++|..+-+++-. +.--...+.+|++. |...|.+++++|-|- -.-|+.- +
T Consensus 33 tv~QI~~L~~aGceivRvavp---------------~~~~a~al~~I~~~--l~~~g~~iPlVADIHFd~~lAl~a---~ 92 (359)
T PF04551_consen 33 TVAQIKRLEEAGCEIVRVAVP---------------DMEAAEALKEIKKR--LRALGSPIPLVADIHFDYRLALEA---I 92 (359)
T ss_dssp HHHHHHHHHHCT-SEEEEEE----------------SHHHHHHHHHHHHH--HHCTT-SS-EEEEESTTCHHHHHH---H
T ss_pred HHHHHHHHHHcCCCEEEEcCC---------------CHHHHHHHHHHHHh--hccCCCCCCeeeecCCCHHHHHHH---H
Confidence 356788999999777553321 11112245777777 888899999999773 3334433 3
Q ss_pred HHhcCeeEEcCCCCCCCC--ChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 142 IAEADGIMVARGDLGIEI--PPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 142 l~~sDgimvaRgDLg~e~--~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
+.+|.|-|.||.++=++ ....+..--+.++++|+++|+|+=+-
T Consensus 93 -~~v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIG 137 (359)
T PF04551_consen 93 -EAVDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIG 137 (359)
T ss_dssp -HC-SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEE
T ss_pred -HHhCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEe
Confidence 33899999999985332 11234556688999999999998653
No 108
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=65.45 E-value=1e+02 Score=30.21 Aligned_cols=53 Identities=23% Similarity=0.247 Sum_probs=32.5
Q ss_pred HHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHh
Q psy259 175 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEA 245 (398)
Q Consensus 175 c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~ 245 (398)
....+.|+|...- .-+ ..|+..++..|||+||+..---. -| .+.++|.++.+.
T Consensus 227 ~~~~~ipii~~GG---------I~~---~~da~~~l~~GAd~V~igra~l~--~p----~~~~~i~~~l~~ 279 (296)
T cd04740 227 YKAVEIPIIGVGG---------IAS---GEDALEFLMAGASAVQVGTANFV--DP----EAFKEIIEGLEA 279 (296)
T ss_pred HHhcCCCEEEECC---------CCC---HHHHHHHHHcCCCEEEEchhhhc--Ch----HHHHHHHHHHHH
Confidence 3445899986322 222 25889999999999999643222 34 234555555444
No 109
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=65.20 E-value=90 Score=31.00 Aligned_cols=115 Identities=16% Similarity=0.210 Sum_probs=73.2
Q ss_pred ccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhh---HHhhcCCCC
Q psy259 123 IKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQML---ESMIKKPRA 198 (398)
Q Consensus 123 ~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmL---eSMi~~~~P 198 (398)
++|+-....-.-++.+.+-++. .+.||+---+| |.++....-+++.+.|+..|.+|-..---+ |.++....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 7888888765545555555555 78899996655 788888889999999999998765332221 111111000
Q ss_pred CchhhhhHHHHHH-hCCcEEEecCccCCCCC---hHHHHHHHHHHHH
Q psy259 199 TRAEISDVANAVL-DGADCVMLSGETAKGDY---PVECVRAMHNTCK 241 (398)
Q Consensus 199 traEvsDVanav~-dG~D~vmLS~ETA~G~y---P~eaV~~m~~I~~ 241 (398)
+--...++..++. .|+|.+-.|--|.-|.| |.--++.+.+|++
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~ 197 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKE 197 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHH
Confidence 0112344577886 89999998877777777 3333444555544
No 110
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=65.07 E-value=1.5e+02 Score=29.31 Aligned_cols=104 Identities=23% Similarity=0.265 Sum_probs=62.1
Q ss_pred cccEE-EeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCc
Q psy259 122 HIKII-AKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATR 200 (398)
Q Consensus 122 ~~~ii-aKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptr 200 (398)
...++ ---.++.--..+.+. =+|.||.-=...|-..+..+ +...+.|.+. .+.|||+ ....=|
T Consensus 123 Gf~vlpyc~dd~~~ar~l~~~--G~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~---~~vpVI~---------egGI~t- 186 (248)
T cd04728 123 GFTVLPYCTDDPVLAKRLEDA--GCAAVMPLGSPIGSGQGLLN-PYNLRIIIER---ADVPVIV---------DAGIGT- 186 (248)
T ss_pred CCEEEEEeCCCHHHHHHHHHc--CCCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---CCCcEEE---------eCCCCC-
Confidence 34455 344454444444443 37888762122333334333 4444444433 4789997 333333
Q ss_pred hhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHH
Q psy259 201 AEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 201 aEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~a 243 (398)
-+|++.|+..|+|+|++.+=-+.++.|..-.+.+..-++.-
T Consensus 187 --peda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aG 227 (248)
T cd04728 187 --PSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAG 227 (248)
T ss_pred --HHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHH
Confidence 26899999999999999888888888977666665555433
No 111
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=64.91 E-value=52 Score=31.98 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=48.4
Q ss_pred cccEEEeecChHHHhcHHHHHHh-----cCeeEEcCCCCCC--C---------------CChhhHHHHHHHHHHHHHHc-
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-----ADGIMVARGDLGI--E---------------IPPWKVFLAQKQMIAKCNKV- 178 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-----sDgimvaRgDLg~--e---------------~~~~~v~~~qk~ii~~c~~~- 178 (398)
++.|+.|+-.....+++.++++. +|+|.+.-+-.+. . -+..-.+...+.+-+.....
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~ 241 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ 241 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC
Confidence 57899998764433345555443 6999885221110 0 01111122333333333444
Q ss_pred -CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 179 -GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 179 -gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
+.|+|...- .-| ..|+..++..|+|+||+.
T Consensus 242 ~~ipiia~GG---------I~~---~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 242 LDIPIIGVGG---------IDS---GEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CCCCEEEECC---------CCC---HHHHHHHHHcCccHheEc
Confidence 688886432 222 257889999999999996
No 112
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=64.49 E-value=88 Score=29.89 Aligned_cols=106 Identities=10% Similarity=0.086 Sum_probs=62.8
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCCh------hhHHHHHHHHHHHHHHcC--CCEEEeeh
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPP------WKVFLAQKQMIAKCNKVG--KPVICATQ 187 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~------~~v~~~qk~ii~~c~~~g--kpvi~ATQ 187 (398)
+.+.|.+..+.-+=+| .++.++.+++..|.|++= +++-+. +....-.+++-+...++| .|+.+.
T Consensus 102 ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlvM----tV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd-- 173 (220)
T PRK08883 102 IKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILLM----SVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID-- 173 (220)
T ss_pred HHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEEE----EecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE--
Confidence 4455777888888887 688899999999999972 222221 222222223333333334 555432
Q ss_pred hhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHH
Q psy259 188 MLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTC 240 (398)
Q Consensus 188 mLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~ 240 (398)
.-=+. ..+...+..|+|++...+---...-|.++++.+++..
T Consensus 174 --------GGI~~---eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~ 215 (220)
T PRK08883 174 --------GGVKV---DNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAEL 215 (220)
T ss_pred --------CCCCH---HHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 12222 2445666779999988644322345888888877654
No 113
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=64.16 E-value=42 Score=34.99 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHH---h-cCeeEEcCCC---CCCCCC-hhhHHHHHHHHHHHHH
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIA---E-ADGIMVARGD---LGIEIP-PWKVFLAQKQMIAKCN 176 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~---~-sDgimvaRgD---Lg~e~~-~~~v~~~qk~ii~~c~ 176 (398)
+|+..+|+. . +.+||.| +|-+.++... . +|||+|.=.- +-...| .+-++.+.+ .+.
T Consensus 243 ~~i~~lr~~--~-----~~pvivK-----gV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~----~~~ 306 (383)
T cd03332 243 EDLAFLREW--T-----DLPIVLK-----GILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVE----AVG 306 (383)
T ss_pred HHHHHHHHh--c-----CCCEEEe-----cCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHH----Hhc
Confidence 478888877 4 5788888 2333333333 3 8999987221 111111 233333332 221
Q ss_pred HcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 177 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 177 ~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
...|++++.-+- --+||+.|+..|||+|++.
T Consensus 307 -~~~~vi~dGGIr------------~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 307 -DRLTVLFDSGVR------------TGADIMKALALGAKAVLIG 337 (383)
T ss_pred -CCCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
Confidence 247888753321 2479999999999999994
No 114
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=64.07 E-value=87 Score=30.56 Aligned_cols=152 Identities=17% Similarity=0.236 Sum_probs=79.0
Q ss_pred CHHHHHHHHHhcccccc----cCCCCCCCCC--CC----CCCCCCCCcccHHHHHHHHHHhhchhcCCccc-EEEeecCh
Q psy259 64 AVDMLEKIIETESNSDE----CSEKPRECPS--EP----EPPHCKEPNLYESNVRLIEKLMATGEQGKHIK-IIAKIENH 132 (398)
Q Consensus 64 ~~e~l~~~i~~Gmnvr~----~~~~~~pgp~--~~----~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~-iiaKIE~~ 132 (398)
+.+.++.|.++|.++-+ ||....=||. +. +. .+..---..+.++++|+. ..+++ +.-.-.|+
T Consensus 26 ~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~-~G~~~~~~~~~v~~ir~~------~~~~plv~m~Y~Np 98 (256)
T TIGR00262 26 SLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALR-AGMTPEKCFELLKKVRQK------HPNIPIGLLTYYNL 98 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhc------CCCCCEEEEEeccH
Confidence 46668889999999977 6652111772 11 21 111100112344555432 12333 33344554
Q ss_pred ---HHHhcH-HHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHH
Q psy259 133 ---QGVKNL-DEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVA 207 (398)
Q Consensus 133 ---~~v~n~-deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVa 207 (398)
-|++++ ++..++ +||+++- || |.++ -..++++|+++|...+.+ -+|..+...+.-++
T Consensus 99 i~~~G~e~f~~~~~~aGvdgviip--Dl----p~ee----~~~~~~~~~~~gl~~i~l--------v~P~T~~eri~~i~ 160 (256)
T TIGR00262 99 IFRKGVEEFYAKCKEVGVDGVLVA--DL----PLEE----SGDLVEAAKKHGVKPIFL--------VAPNADDERLKQIA 160 (256)
T ss_pred HhhhhHHHHHHHHHHcCCCEEEEC--CC----ChHH----HHHHHHHHHHCCCcEEEE--------ECCCCCHHHHHHHH
Confidence 466765 444444 7999987 55 5444 356889999999876642 45655544333333
Q ss_pred HHHHhCCcEEEec-CccCC-CCChHHHHHHHHHHHH
Q psy259 208 NAVLDGADCVMLS-GETAK-GDYPVECVRAMHNTCK 241 (398)
Q Consensus 208 nav~dG~D~vmLS-~ETA~-G~yP~eaV~~m~~I~~ 241 (398)
.. .+|...+|-+ |=|-. ..++-+....++++.+
T Consensus 161 ~~-~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 161 EK-SQGFVYLVSRAGVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred Hh-CCCCEEEEECCCCCCCcccCChhHHHHHHHHHh
Confidence 32 3455444432 22221 2366555555554443
No 115
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=63.92 E-value=1e+02 Score=28.02 Aligned_cols=87 Identities=22% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHHHHHHhhchhcCCcccEEE--eecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCE
Q psy259 106 NVRLIEKLMATGEQGKHIKIIA--KIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPV 182 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iia--KIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpv 182 (398)
.|+.+|+. . .++.++. |+.+.. -.-+++..+. +|+|.+-- . -+ +..-+.+++.|+++|+++
T Consensus 43 ~i~~i~~~--~----~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h~--~---~~----~~~~~~~i~~~~~~g~~~ 106 (202)
T cd04726 43 AVRALREA--F----PDKIIVADLKTADAG-ALEAEMAFKAGADIVTVLG--A---AP----LSTIKKAVKAAKKYGKEV 106 (202)
T ss_pred HHHHHHHH--C----CCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEEe--e---CC----HHHHHHHHHHHHHcCCeE
Confidence 45555554 2 2455665 777652 1123555555 88888641 1 11 123467889999999999
Q ss_pred EEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEe
Q psy259 183 ICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 183 i~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmL 219 (398)
+++ .|+-....++..+...|+|.+.+
T Consensus 107 ~v~-----------~~~~~t~~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 107 QVD-----------LIGVEDPEKRAKLLKLGVDIVIL 132 (202)
T ss_pred EEE-----------EeCCCCHHHHHHHHHCCCCEEEE
Confidence 963 12222334556677789999988
No 116
>PLN03013 cysteine synthase
Probab=63.75 E-value=1e+02 Score=32.64 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=71.1
Q ss_pred HHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhh
Q psy259 171 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 250 (398)
Q Consensus 171 ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 250 (398)
+...|+..|.|+++- .|..+...=+...-..||+.+..-+. .| | .++++..++++++-...++-.
T Consensus 190 LA~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~-~-~~a~~~A~ela~~~~g~~~~~ 254 (429)
T PLN03013 190 LAFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG-M-TGAVQKAEEILKNTPDAYMLQ 254 (429)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC-h-HHHHHHHHHHHhhcCCeEeCC
Confidence 445789999999983 45555445556666789998876332 12 1 245555555544321111111
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCchHHHHHH----hhCCCCCEEEEeCChh
Q psy259 251 KLLTELKSMLPLPIDSAHSVAIAAVEAASKV--FAGAIVVLTTTGTSARLIS----KYRPRCPIISVTRFPQ 316 (398)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~--~A~aIIv~T~SG~tA~~iS----kyRP~~PIIAVT~n~~ 316 (398)
| |++ +..+..-....+.++.+++ ..++||+-.=+|.+..-++ .++|++.|++|-+...
T Consensus 255 q-y~N-------p~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs 318 (429)
T PLN03013 255 Q-FDN-------PANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTES 318 (429)
T ss_pred C-CCC-------HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCC
Confidence 1 111 1111101122334555555 4899999999997765444 4579999999998653
No 117
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=63.69 E-value=22 Score=28.70 Aligned_cols=42 Identities=33% Similarity=0.451 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCC---------chHHHHHHhhCCCCCEEEE
Q psy259 269 SVAIAAVEAASKVFAGAIVVLTTT---------GTSARLISKYRPRCPIISV 311 (398)
Q Consensus 269 ~ia~aav~~A~~~~A~aIIv~T~S---------G~tA~~iSkyRP~~PIIAV 311 (398)
..+.+..+.+.+.+++.||+-++. |.++..+.+.-| ||++.|
T Consensus 89 ~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 89 DVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred ccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 355666788889999999998877 688888998776 999876
No 118
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=63.36 E-value=1.1e+02 Score=29.43 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=63.2
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEc---CCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHh
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVA---RGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESM 192 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimva---RgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSM 192 (398)
+.+.|.+..+.-+=+| .++.++.++...|.|+|= +|-=|-.+= +.+..-.+++-+...+.++.+.+.
T Consensus 106 Ir~~g~k~GlalnP~T--~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi-~~~l~KI~~l~~~~~~~~~~~~Ie------- 175 (223)
T PRK08745 106 IKSHGCQAGLVLNPAT--PVDILDWVLPELDLVLVMSVNPGFGGQAFI-PSALDKLRAIRKKIDALGKPIRLE------- 175 (223)
T ss_pred HHHCCCceeEEeCCCC--CHHHHHHHHhhcCEEEEEEECCCCCCcccc-HHHHHHHHHHHHHHHhcCCCeeEE-------
Confidence 3445778888888887 688899999999999873 222222221 222222223333334456554331
Q ss_pred hcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHH
Q psy259 193 IKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 241 (398)
Q Consensus 193 i~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~ 241 (398)
+. .-=+.. -+...+..|+|.+.+.+---...-|.++++.+++.+.
T Consensus 176 VD-GGI~~e---ti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~~ 220 (223)
T PRK08745 176 ID-GGVKAD---NIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVA 220 (223)
T ss_pred EE-CCCCHH---HHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHH
Confidence 11 112222 2345566799999885322223358899888887654
No 119
>PRK00208 thiG thiazole synthase; Reviewed
Probab=63.33 E-value=1.6e+02 Score=29.10 Aligned_cols=103 Identities=23% Similarity=0.257 Sum_probs=60.9
Q ss_pred cccEE-EeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCc
Q psy259 122 HIKII-AKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATR 200 (398)
Q Consensus 122 ~~~ii-aKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptr 200 (398)
...++ ---+++.--..+.+. =.|.||.-=...|-..|..+ +...+.+.+. .+.|||+ ....=|
T Consensus 123 Gf~vlpyc~~d~~~ak~l~~~--G~~~vmPlg~pIGsg~gi~~-~~~i~~i~e~---~~vpVIv---------eaGI~t- 186 (250)
T PRK00208 123 GFVVLPYCTDDPVLAKRLEEA--GCAAVMPLGAPIGSGLGLLN-PYNLRIIIEQ---ADVPVIV---------DAGIGT- 186 (250)
T ss_pred CCEEEEEeCCCHHHHHHHHHc--CCCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---cCCeEEE---------eCCCCC-
Confidence 34455 344555444444443 37888761122233333323 3344444433 4789998 333333
Q ss_pred hhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHH
Q psy259 201 AEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 242 (398)
Q Consensus 201 aEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~ 242 (398)
-+|++.|+..|+|+|++.+=-+..+.|..-.+.+..-++.
T Consensus 187 --peda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 187 --PSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred --HHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 2689999999999999988888888897765555544443
No 120
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=63.17 E-value=25 Score=31.49 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=34.6
Q ss_pred CCcEEEEECCCchHHHHHHhhC-------------CCCCEEEEeCChhhhhhccccccceEEecC
Q psy259 282 FAGAIVVLTTTGTSARLISKYR-------------PRCPIISVTRFPQVARQLHLHRSIIPLVYE 333 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~iSkyR-------------P~~PIIAVT~n~~taRqL~L~wGV~Pvl~~ 333 (398)
.-..+|+.|.||.|..-++.+| ...+++++|.+..-++.+.=..|..-+..+
T Consensus 73 ~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~ 137 (158)
T cd05015 73 ETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGLNTFEIP 137 (158)
T ss_pred ccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcCCChHHHHHcCCCcceeeeCC
Confidence 4568899999999875544322 677999999988876664323333333333
No 121
>KOG2178|consensus
Probab=62.99 E-value=7.2 Score=40.63 Aligned_cols=77 Identities=32% Similarity=0.510 Sum_probs=52.7
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeC-ChhhhhhccccccceEEecCCC-----------CCCCcccC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTR-FPQVARQLHLHRSIIPLVYEEP-----------SPADWLRD 343 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~-n~~taRqL~L~wGV~Pvl~~~~-----------~~~~w~~d 343 (398)
+..+++.||-|+||.||.-+|. ..|.+|-|.||+ .++. | ...|+++++. ....|..
T Consensus 283 ~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTPICPhS---L----SFRPIIlPds~~L~I~i~~dsR~~awvS- 354 (409)
T KOG2178|consen 283 KVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTPICPHS---L----SFRPIILPDSSELRVEVPLDSRSTAWVS- 354 (409)
T ss_pred EEecceEEEecCCchhhhHhhcCCceecCCCCeEEEeccCCCc---c----cccceEccCccEEEEEeCccccccceEE-
Confidence 3478999999999999999875 789999999998 2222 1 2335555542 1233331
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q psy259 344 VDTRVAHGIKYGRDRKFLNQGDPVIVVTGW 373 (398)
Q Consensus 344 ~d~~I~~ai~~ake~Glik~GD~VVVvsG~ 373 (398)
. -++.+.-+..||.+-+++..
T Consensus 355 f---------DG~~r~El~~GD~i~I~tS~ 375 (409)
T KOG2178|consen 355 F---------DGRPRQELSLGDYIDITTSR 375 (409)
T ss_pred e---------cCcchhhccCCceEEEEecc
Confidence 1 14556668899999887654
No 122
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=62.94 E-value=1.6e+02 Score=28.80 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|++.|.|+.+- .|..+...=+......|++.+...+... + ..-++++...++.++-+. .++
T Consensus 67 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~~-~~~ 132 (291)
T cd01561 67 GLAMVAAAKGYRFIIV-----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETPN-AFW 132 (291)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCCC-cEE
Confidence 4566899999999984 3544444556677788999887753311 1 125666666555443211 111
Q ss_pred hHHHHHHhhcCCCCCChHHHHH-HHHHHHHHhcC--CcEEEEECCCchHHHH----HHhhCCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVA-IAAVEAASKVF--AGAIVVLTTTGTSARL----ISKYRPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia-~aav~~A~~~~--A~aIIv~T~SG~tA~~----iSkyRP~~PIIAVT~n~ 315 (398)
..-|+ .+ ...+.-. ..+.|+.++++ .+.||+.+-+|.++.- +..++|...|++|-+..
T Consensus 133 ~~~~~-------~p-~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 197 (291)
T cd01561 133 LNQFE-------NP-ANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVG 197 (291)
T ss_pred ecCCC-------Cc-hHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 10010 01 1112222 33566777764 7999999999998754 44567999999999864
No 123
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=62.67 E-value=20 Score=34.69 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=41.5
Q ss_pred HHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHH
Q psy259 133 QGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL 211 (398)
Q Consensus 133 ~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~ 211 (398)
...+.++.+.+. .|+|||| |=+|+. .+++. .++++.++...|++. .| ++. +.+.
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt--~~~~~----~~v~~ik~~~lPvil------------fp-----~~~-~~i~ 69 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVT--YEKTD----TLIEALRRYGLPIIL------------FP-----SNP-TNVS 69 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCccc--HHHHH----HHHHHHhccCCCEEE------------eC-----CCc-cccC
Confidence 345567777777 8999999 655544 34443 345566778899997 34 333 3455
Q ss_pred hCCcEEEe
Q psy259 212 DGADCVML 219 (398)
Q Consensus 212 dG~D~vmL 219 (398)
.|+|+++.
T Consensus 70 ~~aDa~l~ 77 (223)
T TIGR01768 70 RDADALFF 77 (223)
T ss_pred cCCCEEEE
Confidence 88999876
No 124
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.45 E-value=9.1 Score=37.74 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=40.5
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCChhhhhhccccccce-EEecCCC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRFPQVARQLHLHRSII-PLVYEEP 335 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~~taRqL~L~wGV~-Pvl~~~~ 335 (398)
+..++.+||-|.+|.||..+|- .-|.++.+.+||=... ....+++.. |++.+..
T Consensus 145 ~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~l--~~r~~~~~~~plVl~~~ 203 (265)
T PRK04885 145 RFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIASI--NNRVFRTLGSPLILPKH 203 (265)
T ss_pred EEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeeccc--cccccccCCCCEEECCC
Confidence 3578999999999999999998 7789999999986521 111344444 7777654
No 125
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=62.34 E-value=1.1e+02 Score=30.71 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=77.0
Q ss_pred eEEEeCCCCCCHHHHHHHHHhcccccc---cCCCC--CC---CCC--C---CCCCCCC--CCccc----HH-HHHHHHHH
Q psy259 54 IICTIGPASVAVDMLEKIIETESNSDE---CSEKP--RE---CPS--E---PEPPHCK--EPNLY----ES-NVRLIEKL 113 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~Gmnvr~---~~~~~--~p---gp~--~---~~~~k~~--~~~~~----vd-dV~~ir~~ 113 (398)
|+-.-||-+.+.|.++++.++|.=--. .+..+ ++ .|. + -+.|... ..+-| +| =++++++.
T Consensus 15 v~~ASg~~~~~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~g~~~~~~~i~~~ 94 (325)
T cd04739 15 LVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNLGPEEYLELIRRA 94 (325)
T ss_pred CEeCCcCCCCCHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCcCHHHHHHHHHHH
Confidence 444458999999999999988743311 22221 22 221 1 1111110 00111 22 12233333
Q ss_pred hhchhcCCcccEEEee--cChHHHhcHHHHHHh--cCeeEEcCCCCCCC---CChhhHHHHHHHHHHHHHH-cCCCEEEe
Q psy259 114 MATGEQGKHIKIIAKI--ENHQGVKNLDEIIAE--ADGIMVARGDLGIE---IPPWKVFLAQKQMIAKCNK-VGKPVICA 185 (398)
Q Consensus 114 ~~l~~~~~~~~iiaKI--E~~~~v~n~deIl~~--sDgimvaRgDLg~e---~~~~~v~~~qk~ii~~c~~-~gkpvi~A 185 (398)
.. ..+..+|+.| .+.+....+-+.++. +|+|=+.=+=+... .+ ..++..-.++++..++ ..+||++
T Consensus 95 --~~--~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g-~~~~~~~~eiv~~v~~~~~iPv~v- 168 (325)
T cd04739 95 --KR--AVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISG-AEVEQRYLDILRAVKSAVTIPVAV- 168 (325)
T ss_pred --Hh--ccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCccc-chHHHHHHHHHHHHHhccCCCEEE-
Confidence 21 1146788888 233333333333333 68886532210000 11 1112233456666654 4799997
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHH-HhCCcEEEecCcc
Q psy259 186 TQMLESMIKKPRATRAEISDVANAV-LDGADCVMLSGET 223 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav-~dG~D~vmLS~ET 223 (398)
+-.|.-.++.+++.+. .-|+|++.+++-+
T Consensus 169 ---------Kl~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 169 ---------KLSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred ---------EcCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 2345555777787765 4599999998654
No 126
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=62.07 E-value=70 Score=31.12 Aligned_cols=56 Identities=14% Similarity=0.043 Sum_probs=44.3
Q ss_pred HHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEe
Q psy259 275 VEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLV 331 (398)
Q Consensus 275 v~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl 331 (398)
..+-.+.+|++|++-..+-..++.+++- ++.|+++......+--|....+++.-+.
T Consensus 162 a~ay~~AGAd~i~~e~~~~e~~~~i~~~-~~~P~~~~gag~~~dgq~lv~~d~lg~~ 217 (240)
T cd06556 162 ALAYAPAGADLIVMECVPVELAKQITEA-LAIPLAGIGAGSGTDGQFLVLADAFGIT 217 (240)
T ss_pred HHHHHHcCCCEEEEcCCCHHHHHHHHHh-CCCCEEEEecCcCCCceEEeHHhhhccc
Confidence 3444567999999988888888899885 7899999988888878887777776553
No 127
>PRK15452 putative protease; Provisional
Probab=61.87 E-value=40 Score=35.75 Aligned_cols=84 Identities=12% Similarity=0.177 Sum_probs=56.2
Q ss_pred ccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCC-----CCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCC
Q psy259 123 IKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGI-----EIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKP 196 (398)
Q Consensus 123 ~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~-----e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~ 196 (398)
+.+.+...+.++++ .-++. +|.|.+|-..++. .+..++ -++.++.|+++|+.|.+++. .
T Consensus 4 peLlapag~~e~l~---aAi~~GADaVY~G~~~~~~R~~~~~f~~ed----l~eav~~ah~~g~kvyvt~n--------~ 68 (443)
T PRK15452 4 PELLSPAGTLKNMR---YAFAYGADAVYAGQPRYSLRVRNNEFNHEN----LALGINEAHALGKKFYVVVN--------I 68 (443)
T ss_pred cEEEEECCCHHHHH---HHHHCCCCEEEECCCccchhhhccCCCHHH----HHHHHHHHHHcCCEEEEEec--------C
Confidence 45667666655554 33344 9999998777765 333343 45678999999999999754 3
Q ss_pred CCCchhhhhHHHH----HHhCCcEEEecC
Q psy259 197 RATRAEISDVANA----VLDGADCVMLSG 221 (398)
Q Consensus 197 ~PtraEvsDVana----v~dG~D~vmLS~ 221 (398)
.|...|..++... ..-|+|+|+.+.
T Consensus 69 i~~e~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 69 APHNAKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 4555565444433 345999999974
No 128
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=61.65 E-value=1.3e+02 Score=29.29 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.++++- .|....-.=+...-..|++.+...+ . .-++++...+++++- ..++.
T Consensus 79 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~l~~~Ga~vi~~~~-----~-~~~~~~~a~~la~~~-~~~~~ 140 (304)
T cd01562 79 GVAYAAKLLGIPATIV-----------MPETAPAAKVDATRAYGAEVVLYGE-----D-FDEAEAKARELAEEE-GLTFI 140 (304)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC-----C-HHHHHHHHHHHHHhc-CCEEe
Confidence 4667899999999984 2322223335667778999888764 2 335555555554431 11111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHHhh----CCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLISKY----RPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iSky----RP~~PIIAVT~n~ 315 (398)
.+ |.. + ...+.....+.++..++ ..+.||+.+-||.|..-++++ .|...|+++.+..
T Consensus 141 ~~-~~n-------~-~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~ 202 (304)
T cd01562 141 HP-FDD-------P-DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEG 202 (304)
T ss_pred CC-CCC-------c-chhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 110 1 11122233456666666 379999999999988666554 7889999999853
No 129
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=61.58 E-value=31 Score=32.19 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=64.8
Q ss_pred cccceeEEEeCCCCCCHHHHHHHHHhcc-cccccCCCCCCCCCC-----CCCCCCCCCcccHHHHHHHHHHhhchhcCCc
Q psy259 49 VRLTGIICTIGPASVAVDMLEKIIETES-NSDECSEKPRECPSE-----PEPPHCKEPNLYESNVRLIEKLMATGEQGKH 122 (398)
Q Consensus 49 ~r~t~Iictigp~~~~~e~l~~~i~~Gm-nvr~~~~~~~pgp~~-----~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~ 122 (398)
.++++|.- +|--.---+.++.|..+|. ++.-+..+. -.++. .|.+.+-.. .=+..+++. +.+.+.+
T Consensus 19 l~~~~Vlv-iG~GglGs~ia~~La~~Gv~~i~lvD~d~-ve~sNL~Rq~l~~~~diG~----~Ka~~~~~~--l~~~np~ 90 (202)
T TIGR02356 19 LLNSHVLI-IGAGGLGSPAALYLAGAGVGTIVIVDDDH-VDLSNLQRQILFTEEDVGR----PKVEVAAQR--LRELNSD 90 (202)
T ss_pred hcCCCEEE-ECCCHHHHHHHHHHHHcCCCeEEEecCCE-EcccchhhhhccChhhCCC----hHHHHHHHH--HHHhCCC
Confidence 34444443 5665666778889988885 231111110 00000 012111110 012334444 5544556
Q ss_pred ccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 123 IKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 123 ~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
+.+-+.-++... +|++++++-.|.|+.+-.. +..+..+-+.|+++++|++.+
T Consensus 91 v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 91 IQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISA 142 (202)
T ss_pred CEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 655543333322 5788888889999887432 245667889999999999985
No 130
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=61.50 E-value=41 Score=31.39 Aligned_cols=109 Identities=9% Similarity=0.131 Sum_probs=66.4
Q ss_pred EEeCCCCCCHHHHHHHHHhcccc-cccCCCCCCCCCCCCCCCC-CCCccc-HHH-----HHHHHHHhhchhcCCcccEEE
Q psy259 56 CTIGPASVAVDMLEKIIETESNS-DECSEKPRECPSEPEPPHC-KEPNLY-ESN-----VRLIEKLMATGEQGKHIKIIA 127 (398)
Q Consensus 56 ctigp~~~~~e~l~~~i~~Gmnv-r~~~~~~~pgp~~~~~~k~-~~~~~~-vdd-----V~~ir~~~~l~~~~~~~~iia 127 (398)
|=+|.-.---|.++.|..+|..- .-+..+ .....+ ...++| -+| ++.+++. |.+.+.++.|-+
T Consensus 25 lIiG~gglG~evak~La~~GVg~i~lvD~d-------~ve~snL~rqfl~~~~diG~~Ka~a~~~~--L~~lNp~v~i~~ 95 (197)
T cd01492 25 LLIGLKGLGAEIAKNLVLSGIGSLTILDDR-------TVTEEDLGAQFLIPAEDLGQNRAEASLER--LRALNPRVKVSV 95 (197)
T ss_pred EEEcCCHHHHHHHHHHHHcCCCEEEEEECC-------cccHhhCCCCccccHHHcCchHHHHHHHH--HHHHCCCCEEEE
Confidence 44677777889999999999532 111111 000000 112222 122 3445555 666677777665
Q ss_pred eecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 128 KIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 128 KIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
.-++.. ++.++.++-.|.|+.+..+ +.....+-+.|++.|+|++.+
T Consensus 96 ~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 96 DTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred EecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 544443 4567778889999988543 235566778999999999976
No 131
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=61.43 E-value=28 Score=30.81 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=42.2
Q ss_pred ChHHHhcHHHHHHh--cCeeE--EcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 131 NHQGVKNLDEIIAE--ADGIM--VARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 131 ~~~~v~n~deIl~~--sDgim--vaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
+.+.++++++.+.. .|-|+ +|--|+....+.+++....+.+++.+++.|.++++.
T Consensus 44 ~~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 44 TSQMLVRFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 34566777765432 57654 455599888889999999999999999999998874
No 132
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=61.38 E-value=68 Score=31.75 Aligned_cols=86 Identities=23% Similarity=0.252 Sum_probs=50.9
Q ss_pred cccEEEeecChHHHhcHHHHHHh-----cCeeEEc-----CCCC-----------------CCCCChhhHHHHHHHHHHH
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-----ADGIMVA-----RGDL-----------------GIEIPPWKVFLAQKQMIAK 174 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-----sDgimva-----RgDL-----------------g~e~~~~~v~~~qk~ii~~ 174 (398)
++.|+.||-- .+.++.++++. +|||.+. |-++ |-=-+...-+...+.+-+.
T Consensus 168 ~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~ 245 (299)
T cd02940 168 KIPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQI 245 (299)
T ss_pred CCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHH
Confidence 5899999952 34456666553 7998741 1111 1001112234455555555
Q ss_pred HHHc--CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 175 CNKV--GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 175 c~~~--gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
.+.. ..|+|-. .-=+. ..|+...++-|||+||+..
T Consensus 246 ~~~~~~~ipIig~----------GGI~~--~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 246 ARAPEPGLPISGI----------GGIES--WEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred HHhcCCCCcEEEE----------CCCCC--HHHHHHHHHcCCChheEce
Confidence 5555 5777753 22222 3599999999999999954
No 133
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=61.28 E-value=62 Score=31.85 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=33.1
Q ss_pred HHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 175 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 175 c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
.+..+.|+|.. ...-| ..|+..++..|+|+||+..---. -| .+..++.++.+..
T Consensus 230 ~~~~~ipvi~~---------GGI~~---~~da~~~l~aGAd~V~igr~ll~--~P----~~~~~i~~~l~~~ 283 (301)
T PRK07259 230 YQAVDIPIIGM---------GGISS---AEDAIEFIMAGASAVQVGTANFY--DP----YAFPKIIEGLEAY 283 (301)
T ss_pred HHhCCCCEEEE---------CCCCC---HHHHHHHHHcCCCceeEcHHHhc--Cc----HHHHHHHHHHHHH
Confidence 34458999963 22333 24778889999999999643222 24 4455665555543
No 134
>PRK07334 threonine dehydratase; Provisional
Probab=61.17 E-value=83 Score=32.54 Aligned_cols=119 Identities=15% Similarity=0.134 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+++- .|..+.-.-+...-..|++.++.. ...-++++...+++++. ..++.
T Consensus 85 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~-~~~~~ 146 (403)
T PRK07334 85 GVAYHAQRLGIPATIV-----------MPRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEE-GLTFV 146 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhc-CCEec
Confidence 4566899999999983 333333345566777899998763 23556777666665442 11111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLISK----YRPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~ 315 (398)
.+ |++ + ...+.-...+.++..++ ..+.||+..-+|.|+.-+++ ++|.+.|++|-+..
T Consensus 147 ~~-~~~-------~-~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~ 208 (403)
T PRK07334 147 HP-YDD-------P-AVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTEL 208 (403)
T ss_pred CC-CCC-------H-HHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 110 1 12222333455666665 46899999999998765554 58999999999864
No 135
>PRK12483 threonine dehydratase; Reviewed
Probab=61.05 E-value=1.5e+02 Score=32.21 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=77.1
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+.+- .|..+...-+...-..||+.+.- | ...-++++...+++++- ...+.
T Consensus 99 gvA~aA~~lGi~~~Iv-----------mP~~tp~~Kv~~~r~~GAeVil~-g-----~~~d~a~~~A~~la~e~-g~~~v 160 (521)
T PRK12483 99 GVALAAARLGVKAVIV-----------MPRTTPQLKVDGVRAHGGEVVLH-G-----ESFPDALAHALKLAEEE-GLTFV 160 (521)
T ss_pred HHHHHHHHhCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEE-C-----CCHHHHHHHHHHHHHhc-CCeee
Confidence 4556789999999984 45555555678888899997654 3 33457777766665431 11111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCchHHHHHHh----hCCCCCEEEEeCChh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF--AGAIVVLTTTGTSARLISK----YRPRCPIISVTRFPQ 316 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~--A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~~ 316 (398)
.+ |++ .+....-..-+.++..+++ .++||+..=+|.+..-+++ ++|.+.||+|-+...
T Consensus 161 ~p-fdd--------~~viaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a 224 (521)
T PRK12483 161 PP-FDD--------PDVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDS 224 (521)
T ss_pred CC-CCC--------hHHHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 11 110 1122222334667777764 7999999999998766665 489999999998543
No 136
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=59.66 E-value=2e+02 Score=29.09 Aligned_cols=214 Identities=15% Similarity=0.193 Sum_probs=114.6
Q ss_pred cccEEEeecChHHHhcHHH-----HHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhc
Q psy259 122 HIKIIAKIENHQGVKNLDE-----IIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIK 194 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~de-----Il~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~ 194 (398)
...|.+|+|...---.+.+ |++. ..|.+ -+|+--+|-..-..-.. +.-.|+..|-++++-
T Consensus 25 ~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l-~pG~tIVE~TSGNTGI~---LA~vaa~~Gy~~iiv--------- 91 (300)
T COG0031 25 GVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLL-KPGGTIVEATSGNTGIA---LAMVAAAKGYRLIIV--------- 91 (300)
T ss_pred CceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCC-CCCCEEEEcCCChHHHH---HHHHHHHcCCcEEEE---------
Confidence 4689999996543323322 2222 45543 34554444332221111 234588999999984
Q ss_pred CCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHh-hhhhhHHHHHHhhcCCCCCChHHHHHHH
Q psy259 195 KPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEA-AIWHTKLLTELKSMLPLPIDSAHSVAIA 273 (398)
Q Consensus 195 ~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~-~~~~~~~~~~~~~~~~~~~~~~~~ia~a 273 (398)
.|......-..---..||..++..+ .+.|-..+++-.++++.+... .++..| |++ +.++.----..
T Consensus 92 --mP~~~S~er~~~l~a~GAevi~t~~---~~g~~~~a~~~a~el~~~~p~~~~~~~Q-f~N-------paN~~aH~~tT 158 (300)
T COG0031 92 --MPETMSQERRKLLRALGAEVILTPG---APGNMKGAIERAKELAAEIPGYAVWLNQ-FEN-------PANPEAHYETT 158 (300)
T ss_pred --eCCCCCHHHHHHHHHcCCEEEEcCC---CCCchHHHHHHHHHHHHhCCCceEchhh-cCC-------CccHHHHHhhh
Confidence 3333333333555668999999876 334344556655555555433 333222 321 12211111122
Q ss_pred HHHHHHhcC--CcEEEEECCCchHH----HHHHhhCCCCCEEEEeCChhhhhh----cc----ccccceEEecCCCCCC-
Q psy259 274 AVEAASKVF--AGAIVVLTTTGTSA----RLISKYRPRCPIISVTRFPQVARQ----LH----LHRSIIPLVYEEPSPA- 338 (398)
Q Consensus 274 av~~A~~~~--A~aIIv~T~SG~tA----~~iSkyRP~~PIIAVT~n~~taRq----L~----L~wGV~Pvl~~~~~~~- 338 (398)
+-++-.+.+ .+++|+-.-||-|. +.|-...|.+-|++|=|.....-. -| +-.|..|..+....-+
T Consensus 159 ~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~ 238 (300)
T COG0031 159 GPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDE 238 (300)
T ss_pred HHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCce
Confidence 334444443 89999988888875 555556899999999887544332 22 3444555333221111
Q ss_pred CcccCHHHHHHHHHHHHHHcCCC
Q psy259 339 DWLRDVDTRVAHGIKYGRDRKFL 361 (398)
Q Consensus 339 ~w~~d~d~~I~~ai~~ake~Gli 361 (398)
...-+-++.+..+.+.+++.|++
T Consensus 239 v~~V~d~~A~~~~r~La~~eGil 261 (300)
T COG0031 239 VIRVSDEEAIATARRLAREEGLL 261 (300)
T ss_pred EEEECHHHHHHHHHHHHHHhCee
Confidence 11124466777777888887763
No 137
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=59.58 E-value=9.7 Score=37.65 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=31.4
Q ss_pred HhcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCC
Q psy259 279 SKVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRF 314 (398)
Q Consensus 279 ~~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n 314 (398)
....++.+||-|+||.||..+|- ..|..+.|++|+-
T Consensus 162 ~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi 201 (281)
T COG0061 162 ESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPI 201 (281)
T ss_pred EEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeec
Confidence 34578999999999999999997 5689999999983
No 138
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=59.39 E-value=1.2e+02 Score=26.94 Aligned_cols=90 Identities=23% Similarity=0.224 Sum_probs=52.5
Q ss_pred cccEEEeecCh-------HHHhcHHHHHHh-cCeeEEcCCCCCCCCC--hhhHHHHHHHHHHHHHHcCCCEEEeehhhHH
Q psy259 122 HIKIIAKIENH-------QGVKNLDEIIAE-ADGIMVARGDLGIEIP--PWKVFLAQKQMIAKCNKVGKPVICATQMLES 191 (398)
Q Consensus 122 ~~~iiaKIE~~-------~~v~n~deIl~~-sDgimvaRgDLg~e~~--~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeS 191 (398)
++.+++++=.. +.++..++-.+. +|++++..- .....+ .+.+...-+.+.+.| +.+.|+++-
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~-~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy------ 119 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVIN-IGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVI------ 119 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEecc-HHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEE------
Confidence 68899988654 455666666555 899998532 111112 355556666666666 569999862
Q ss_pred hhcCCCCC--chhhhhHHH-HHHhCCcEEEecC
Q psy259 192 MIKKPRAT--RAEISDVAN-AVLDGADCVMLSG 221 (398)
Q Consensus 192 Mi~~~~Pt--raEvsDVan-av~dG~D~vmLS~ 221 (398)
..|.-+ -.++...++ +...|+|+|=.|.
T Consensus 120 --~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 120 --LETRGLKTADEIAKAARIAAEAGADFIKTST 150 (201)
T ss_pred --EECCCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 223322 122222222 2357999997753
No 139
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=59.14 E-value=1.8e+02 Score=28.21 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=65.4
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCCh------hhHHHHHHHHHHHHHHcCCCEEEeehhh
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPP------WKVFLAQKQMIAKCNKVGKPVICATQML 189 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~------~~v~~~qk~ii~~c~~~gkpvi~ATQmL 189 (398)
+.+.|.+..|.-+-.| .++.++.++...|.|+|= +++-|. +.+..-.+++-+...++|..+.+.
T Consensus 104 Ik~~G~kaGlalnP~T--~~~~l~~~l~~vD~VLvM----sV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~Ie---- 173 (229)
T PRK09722 104 IRRAGMKVGLVLNPET--PVESIKYYIHLLDKITVM----TVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIE---- 173 (229)
T ss_pred HHHcCCCEEEEeCCCC--CHHHHHHHHHhcCEEEEE----EEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEE----
Confidence 3445778888888888 578999999999999873 444332 222222333333334555554431
Q ss_pred HHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCC--CChHHHHHHHHHHHHHH
Q psy259 190 ESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKG--DYPVECVRAMHNTCKEA 243 (398)
Q Consensus 190 eSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G--~yP~eaV~~m~~I~~~a 243 (398)
+.- --+.. -+...+..|||.+.+.+---.| .-|.++++.++....++
T Consensus 174 ---VDG-GI~~~---~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~~~ 222 (229)
T PRK09722 174 ---VDG-SCNQK---TYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIEAA 222 (229)
T ss_pred ---EEC-CCCHH---HHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHHHh
Confidence 121 11211 2344566799999886321234 35889999998765544
No 140
>PRK06381 threonine synthase; Validated
Probab=59.03 E-value=1.7e+02 Score=29.06 Aligned_cols=121 Identities=17% Similarity=0.082 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|-|+++. .|......-+...-..|++.+...+ .| -++++...+.++. +. . |
T Consensus 77 alA~~aa~~G~~~~iv-----------vp~~~~~~~~~~l~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~~-~-~ 136 (319)
T PRK06381 77 SIAYFARLYGLKAVIF-----------IPRSYSNSRVKEMEKYGAEIIYVDG-----KY-EEAVERSRKFAKE-NG-I-Y 136 (319)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEcCC-----CH-HHHHHHHHHHHHH-cC-c-E
Confidence 4566889999999984 3444444556677789999988864 23 4666666666543 21 1 1
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCchHHHHHHhh----------CCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF--AGAIVVLTTTGTSARLISKY----------RPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~--A~aIIv~T~SG~tA~~iSky----------RP~~PIIAVT~n~ 315 (398)
|.. .....+....+.....+.++..+++ .++||+..-+|.|..-++++ +|.+.|++|.+..
T Consensus 137 ---~~~--~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~ 209 (319)
T PRK06381 137 ---DAN--PGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSG 209 (319)
T ss_pred ---ecC--CCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCC
Confidence 100 0000011112334445566666664 68999999999998766664 6888899998754
No 141
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=58.82 E-value=1.9e+02 Score=28.56 Aligned_cols=153 Identities=19% Similarity=0.198 Sum_probs=81.5
Q ss_pred eEEEeCCCCCCHHHHHHHHHhcccccc----cCCCC---CCCCC--CC---CCCC-CCCC--ccc---HH-HHHHHHHHh
Q psy259 54 IICTIGPASVAVDMLEKIIETESNSDE----CSEKP---RECPS--EP---EPPH-CKEP--NLY---ES-NVRLIEKLM 114 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~Gmnvr~----~~~~~---~pgp~--~~---~~~k-~~~~--~~~---vd-dV~~ir~~~ 114 (398)
|+-.-||-+.+.|.+.++.++|.-.-. +.+.+ .|.|. +. +.+. +-.+ .+. ++ ...+++++
T Consensus 15 i~~aag~~~~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~~~~~~~~~~~~~- 93 (299)
T cd02940 15 FGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKPLEYWLKEIREL- 93 (299)
T ss_pred CEeCCcCCCCCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccccCHHHHHHHHHHH-
Confidence 444459989999999999999864422 22212 22331 11 0000 0001 000 11 23344444
Q ss_pred hchhcCCcccEEEee--c-ChHHHhcHHHHHHh--cCeeEEcCC--------CCCCCCChhhHHHHHHHHHHHHHH-cCC
Q psy259 115 ATGEQGKHIKIIAKI--E-NHQGVKNLDEIIAE--ADGIMVARG--------DLGIEIPPWKVFLAQKQMIAKCNK-VGK 180 (398)
Q Consensus 115 ~l~~~~~~~~iiaKI--E-~~~~v~n~deIl~~--sDgimvaRg--------DLg~e~~~~~v~~~qk~ii~~c~~-~gk 180 (398)
..... +..+|+.| . +++-+...-+.++. +|+|=+.=| .+|..+. +-+..-.+|++..++ ..+
T Consensus 94 -~~~~~-~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~ 169 (299)
T cd02940 94 -KKDFP-DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVG--QDPELVEEICRWVREAVKI 169 (299)
T ss_pred -HhhCC-CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhc--cCHHHHHHHHHHHHHhcCC
Confidence 32222 45678888 5 66665555445543 677755211 1222221 123344566766664 479
Q ss_pred CEEEeehhhHHhhcCCCCCchhhhhHHH-HHHhCCcEEEecC
Q psy259 181 PVICATQMLESMIKKPRATRAEISDVAN-AVLDGADCVMLSG 221 (398)
Q Consensus 181 pvi~ATQmLeSMi~~~~PtraEvsDVan-av~dG~D~vmLS~ 221 (398)
||.+ +-+|.-.++.+++. +..-|+|+|.+++
T Consensus 170 Pv~v----------Kl~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 170 PVIA----------KLTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred CeEE----------ECCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 9997 34566556767777 4556999999875
No 142
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=58.23 E-value=37 Score=39.59 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhchhcC-----CcccEEEeecChHHHhcHHHHHHh--c---------------CeeEEcCCCCCCCCCh
Q psy259 104 ESNVRLIEKLMATGEQG-----KHIKIIAKIENHQGVKNLDEIIAE--A---------------DGIMVARGDLGIEIPP 161 (398)
Q Consensus 104 vddV~~ir~~~~l~~~~-----~~~~iiaKIE~~~~v~n~deIl~~--s---------------DgimvaRgDLg~e~~~ 161 (398)
++||.++--+ ..+.| ..+.|+.=+||.+.++|.++|++. + =-||+|+.|=+.+-|.
T Consensus 557 ~sdiL~V~~l--~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYSDS~Kd~G~ 634 (974)
T PTZ00398 557 PSDILLVHVF--QKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYSDSGKDGGR 634 (974)
T ss_pred HHHHHHHHHH--HHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecccccccccH
Confidence 3488888777 55532 357899999999999999999986 1 1599999999999986
Q ss_pred ----hhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 162 ----WKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 162 ----~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
-.+..+|..+.+.|+++|..+..-
T Consensus 635 laa~w~l~~Aq~~L~~~~~~~gV~l~~F 662 (974)
T PTZ00398 635 LTSAWELYKAQERLSNIARQYGVEIRFF 662 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 667899999999999999988763
No 143
>PLN02979 glycolate oxidase
Probab=57.76 E-value=71 Score=33.21 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHH---h-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHH--c
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIA---E-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNK--V 178 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~---~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~--~ 178 (398)
+||..+|+. .+.+||.|- |-+.++... . +|||.|+-.. |-.. ...+-....+.+..+. .
T Consensus 213 ~dl~wlr~~-------~~~PvivKg-----V~~~~dA~~a~~~Gvd~I~VsnhG-Grql--d~~p~t~~~L~ei~~~~~~ 277 (366)
T PLN02979 213 KDVQWLQTI-------TKLPILVKG-----VLTGEDARIAIQAGAAGIIVSNHG-ARQL--DYVPATISALEEVVKATQG 277 (366)
T ss_pred HHHHHHHhc-------cCCCEEeec-----CCCHHHHHHHHhcCCCEEEECCCC-cCCC--CCchhHHHHHHHHHHHhCC
Confidence 588888887 257888873 333443333 3 8999997321 1111 1111112222222222 2
Q ss_pred CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 179 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 179 gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
..|||... ..= .-+||+.|+..|||+|++..
T Consensus 278 ~~~Vi~dG---------GIr---~G~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 278 RIPVFLDG---------GVR---RGTDVFKALALGASGIFIGR 308 (366)
T ss_pred CCeEEEeC---------CcC---cHHHHHHHHHcCCCEEEEcH
Confidence 36777632 221 24799999999999999853
No 144
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=57.73 E-value=2e+02 Score=28.32 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=79.4
Q ss_pred eEEEeCCCCCCHHHHHHHHHhcccccc---cCCCC---CCCCC--CC---------CCCCCCCCcccHHHHHHHHHHhhc
Q psy259 54 IICTIGPASVAVDMLEKIIETESNSDE---CSEKP---RECPS--EP---------EPPHCKEPNLYESNVRLIEKLMAT 116 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~Gmnvr~---~~~~~---~pgp~--~~---------~~~k~~~~~~~vddV~~ir~~~~l 116 (398)
|+..-||.+.+.|.++++-+.|.-.-. ++.++ .|.|. +. +.+.+- --|+ ++++.. .
T Consensus 15 v~~aag~~~~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~--~~~~---~~~~~~--~ 87 (301)
T PRK07259 15 VMPASGTFGFGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGV--DAFI---EEELPW--L 87 (301)
T ss_pred cEECCcCCCCCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCH--HHHH---HHHHHH--H
Confidence 555568989899999998888855522 33333 33441 11 111111 1132 233333 2
Q ss_pred hhcCCcccEEEee--cChHHHhcHHHHHHh---cCeeEE-------cCCCCCCCCChhhHHHHHHHHHHHHHHc-CCCEE
Q psy259 117 GEQGKHIKIIAKI--ENHQGVKNLDEIIAE---ADGIMV-------ARGDLGIEIPPWKVFLAQKQMIAKCNKV-GKPVI 183 (398)
Q Consensus 117 ~~~~~~~~iiaKI--E~~~~v~n~deIl~~---sDgimv-------aRgDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi 183 (398)
.+ .+..+|+.| .+.+.....-+.++. .|+|=+ ..| |..+.. =+..-.++++..+++ .+|++
T Consensus 88 ~~--~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g--g~~~~~--~~~~~~eiv~~vr~~~~~pv~ 161 (301)
T PRK07259 88 EE--FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG--GMAFGT--DPELAYEVVKAVKEVVKVPVI 161 (301)
T ss_pred hc--cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC--cccccc--CHHHHHHHHHHHHHhcCCCEE
Confidence 22 256788887 345555444444333 588855 322 222211 123445666666655 79998
Q ss_pred EeehhhHHhhcCCCCCchhhhhHHHH-HHhCCcEEEecCc
Q psy259 184 CATQMLESMIKKPRATRAEISDVANA-VLDGADCVMLSGE 222 (398)
Q Consensus 184 ~ATQmLeSMi~~~~PtraEvsDVana-v~dG~D~vmLS~E 222 (398)
+= -.|+-.|..+++.. ...|+|++.+++=
T Consensus 162 vK----------l~~~~~~~~~~a~~l~~~G~d~i~~~nt 191 (301)
T PRK07259 162 VK----------LTPNVTDIVEIAKAAEEAGADGLSLINT 191 (301)
T ss_pred EE----------cCCCchhHHHHHHHHHHcCCCEEEEEcc
Confidence 72 23555577777764 4569999988653
No 145
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=57.66 E-value=35 Score=32.97 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=45.1
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
..+++. |.+.+.++.|-+--+..+. +|++++++..|.|+-+=.+ +.....+-+.|.++|+|++.+.
T Consensus 81 ~~a~~~--l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D~----------~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 81 ESAKDA--LTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCTDN----------VEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHH--HHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 444555 6666777776664443332 5788899989988877332 2345667789999999999863
No 146
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=57.36 E-value=1.3e+02 Score=30.32 Aligned_cols=106 Identities=22% Similarity=0.300 Sum_probs=61.3
Q ss_pred cccEEEeecChHHHhcHHHHHHh-----cCeeEEc-CC-CCCCCC------------ChhhHHHHHHHHHHHHHHcCCCE
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-----ADGIMVA-RG-DLGIEI------------PPWKVFLAQKQMIAKCNKVGKPV 182 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-----sDgimva-Rg-DLg~e~------------~~~~v~~~qk~ii~~c~~~gkpv 182 (398)
++.|++|+-- .+.++.++++. +|||.+. |. ...+.+ ++...+.+.+.+-+.+.....|+
T Consensus 163 ~iPv~vKl~p--~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipI 240 (325)
T cd04739 163 TIPVAVKLSP--FFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASL 240 (325)
T ss_pred CCCEEEEcCC--CccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCE
Confidence 5899999852 24456666554 6888763 32 011111 11222344444444445557888
Q ss_pred EEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCC-CCChHHHHHHHHHHHHHHHhhh
Q psy259 183 ICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAK-GDYPVECVRAMHNTCKEAEAAI 247 (398)
Q Consensus 183 i~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~-G~yP~eaV~~m~~I~~~aE~~~ 247 (398)
|-..- .-| ..|+...++-|||+||+...--. | | ....+|+++.+..+
T Consensus 241 ig~GG---------I~s---~~Da~e~l~aGA~~Vqv~ta~~~~g--p----~~~~~i~~~L~~~l 288 (325)
T cd04739 241 AASGG---------VHD---AEDVVKYLLAGADVVMTTSALLRHG--P----DYIGTLLAGLEAWM 288 (325)
T ss_pred EEECC---------CCC---HHHHHHHHHcCCCeeEEehhhhhcC--c----hHHHHHHHHHHHHH
Confidence 75322 222 35899999999999999732222 2 3 35677777777644
No 147
>KOG2550|consensus
Probab=56.78 E-value=60 Score=34.42 Aligned_cols=131 Identities=24% Similarity=0.330 Sum_probs=82.7
Q ss_pred EEeCCCCCCHHHHHHHHHhcccccc--cCCCCCCCCCCCCCCCCCCCccc-HHHHHHHHHHhhchhcCCcccEEE-eecC
Q psy259 56 CTIGPASVAVDMLEKIIETESNSDE--CSEKPRECPSEPEPPHCKEPNLY-ESNVRLIEKLMATGEQGKHIKIIA-KIEN 131 (398)
Q Consensus 56 ctigp~~~~~e~l~~~i~~Gmnvr~--~~~~~~pgp~~~~~~k~~~~~~~-vddV~~ir~~~~l~~~~~~~~iia-KIE~ 131 (398)
..||-.-.+.+.|.-|.++|.|+-- -|.+ +-+| +.=|+-+|+ .-.+..||+ -.=|
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqG---------------nS~~qiemik~iK~------~yP~l~ViaGNVVT 302 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQG---------------NSIYQLEMIKYIKE------TYPDLQIIAGNVVT 302 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCC---------------cchhHHHHHHHHHh------hCCCceeeccceee
Confidence 3467777888999999999988833 2222 3333 333444443 345666776 3444
Q ss_pred hHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHH------HHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhh
Q psy259 132 HQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVF------LAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISD 205 (398)
Q Consensus 132 ~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~------~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsD 205 (398)
.+=.+|| |.+=+||+-|+=|-=++-+-.|.+. -+--...+.+++.|.|||- . ---.-+.+
T Consensus 303 ~~qa~nL--I~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviA---------D---GGiq~~Gh 368 (503)
T KOG2550|consen 303 KEQAANL--IAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIA---------D---GGIQNVGH 368 (503)
T ss_pred HHHHHHH--HHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceee---------c---CCcCccch
Confidence 4444443 3344999999877555444433221 1223567888999999995 2 22224678
Q ss_pred HHHHHHhCCcEEEecC
Q psy259 206 VANAVLDGADCVMLSG 221 (398)
Q Consensus 206 Vanav~dG~D~vmLS~ 221 (398)
|+.|+.-||+.||+.+
T Consensus 369 i~KAl~lGAstVMmG~ 384 (503)
T KOG2550|consen 369 VVKALGLGASTVMMGG 384 (503)
T ss_pred hHhhhhcCchhheecc
Confidence 9999999999999854
No 148
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=56.48 E-value=1.1e+02 Score=31.86 Aligned_cols=126 Identities=16% Similarity=0.118 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.++.+- .|..+.-.-+...-..||+.+...+... -..+-..++...+++++.+..++.
T Consensus 76 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~~~~~-~~~~~~~~~~a~~l~~~~~~~~~~ 143 (454)
T TIGR01137 76 GLALVAAIKGYKCIIV-----------LPEKMSNEKVDVLKALGAEIVRTPTAAA-FDSPESHIGVAKRLVREIPGAHIL 143 (454)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCcCHHHHHHHHHCCCEEEEcCCccC-CCchHHHHHHHHHHHHhCCCcEec
Confidence 3566899999999983 3433333345666778999877643111 112222244444444432221111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV--FAGAIVVLTTTGTSARLISK----YRPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~--~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~ 315 (398)
.+ |++ +..+..-....+.++..++ ..++||+..=+|.|+.-+++ ++|.+.|++|.+..
T Consensus 144 ~~-~~~-------~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~ 207 (454)
T TIGR01137 144 DQ-YNN-------PSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEG 207 (454)
T ss_pred cc-CCC-------hhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 11 111 1111111223345666665 47999999999998765554 67999999998854
No 149
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=56.31 E-value=2.3e+02 Score=28.72 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=55.3
Q ss_pred cCCCEEEeehhhHHhhcCC----CCCchhhhhHHHHHHhCCcEEEec-------CccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 178 VGKPVICATQMLESMIKKP----RATRAEISDVANAVLDGADCVMLS-------GETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 178 ~gkpvi~ATQmLeSMi~~~----~PtraEvsDVanav~dG~D~vmLS-------~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
.+.|+|+. +-.+. .-.-+|...++.-+.+++|++.|. +. ..+.+|-...+.++.+-......
T Consensus 136 ~~~pvivs------I~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~-~~~~~~~~~~eiv~aVr~~~~~~ 208 (344)
T PRK05286 136 RGIPLGIN------IGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGL-RDLQYGEALDELLAALKEAQAEL 208 (344)
T ss_pred CCCcEEEE------EecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCc-ccccCHHHHHHHHHHHHHHHhcc
Confidence 67999983 32221 113456677777788889999984 32 23778877666665555544310
Q ss_pred hhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEECCC
Q psy259 247 IWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTT 292 (398)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~S 292 (398)
.....++-.+ .+. .+..+ ....++++.+.++++|++..++
T Consensus 209 ~~~~PV~vKl---sp~-~~~~~--~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 209 HGYVPLLVKI---APD-LSDEE--LDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred ccCCceEEEe---CCC-CCHHH--HHHHHHHHHHhCCcEEEEeCCc
Confidence 0000111111 111 11112 2234455667799999988653
No 150
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=56.18 E-value=1.5e+02 Score=29.11 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCCh-HHHHHHHHHHHHHHHhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYP-VECVRAMHNTCKEAEAAIW 248 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP-~eaV~~m~~I~~~aE~~~~ 248 (398)
.+...|++.|.|+.+- .|....-+=+...-..|++.+..-+ .|. .++++...++.++-...++
T Consensus 71 alA~~a~~~Gl~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 134 (298)
T TIGR01139 71 ALAMVAAARGYKLILT-----------MPETMSIERRKLLKAYGAELVLTPG-----AEGMKGAIAKAEEIAASTPNSYF 134 (298)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCccCHHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHhCCCcEE
Confidence 3556889999999984 3333322234556678999886643 343 3566555554332111010
Q ss_pred hhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCchHHHH----HHhhCCCCCEEEEeCCh
Q psy259 249 HTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF--AGAIVVLTTTGTSARL----ISKYRPRCPIISVTRFP 315 (398)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~--A~aIIv~T~SG~tA~~----iSkyRP~~PIIAVT~n~ 315 (398)
+..-|+ .+..+..-....+.|+..+++ .+.||+.+=+|.++-- +..++|...|++|-+..
T Consensus 135 ~~~~~~-------n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 200 (298)
T TIGR01139 135 MLQQFE-------NPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAE 200 (298)
T ss_pred cccccC-------CcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCC
Confidence 111111 111111112233455656553 7999999999988754 44567999999999854
No 151
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.00 E-value=56 Score=31.15 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=47.6
Q ss_pred ChHHHhcHHHHHHhc-C--eeEEcCCCCCCCCChhhHH-------------HHHHHHHHHHHHcCCCEEEeehhhHHhhc
Q psy259 131 NHQGVKNLDEIIAEA-D--GIMVARGDLGIEIPPWKVF-------------LAQKQMIAKCNKVGKPVICATQMLESMIK 194 (398)
Q Consensus 131 ~~~~v~n~deIl~~s-D--gimvaRgDLg~e~~~~~v~-------------~~qk~ii~~c~~~gkpvi~ATQmLeSMi~ 194 (398)
++.+++.|.++.+.. | .++||=| .=+..+.+. ..-..+++.|+++|.|++
T Consensus 48 ~~~a~~~i~~l~~~~~~~p~~~vGaG---TV~~~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~i----------- 113 (213)
T PRK06552 48 NPFASEVIKELVELYKDDPEVLIGAG---TVLDAVTARLAILAGAQFIVSPSFNRETAKICNLYQIPYL----------- 113 (213)
T ss_pred CccHHHHHHHHHHHcCCCCCeEEeee---eCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEE-----------
Confidence 566777777776653 2 3666655 111222222 233578999999999998
Q ss_pred CCCCCchhhhhHHHHHHhCCcEEEe
Q psy259 195 KPRATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 195 ~~~PtraEvsDVanav~dG~D~vmL 219 (398)
|--.-.+++..|...|+|.+-|
T Consensus 114 ---PG~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 114 ---PGCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred ---CCcCCHHHHHHHHHcCCCEEEE
Confidence 3333446778999999999998
No 152
>PRK15005 universal stress protein F; Provisional
Probab=55.96 E-value=29 Score=29.38 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCcEEEEECCC--------chHHHHHHhhCCCCCEEEE
Q psy259 271 AIAAVEAASKVFAGAIVVLTTT--------GTSARLISKYRPRCPIISV 311 (398)
Q Consensus 271 a~aav~~A~~~~A~aIIv~T~S--------G~tA~~iSkyRP~~PIIAV 311 (398)
+...++.|.+.+++.||+-|+. |.++..+.+.-| |||+.|
T Consensus 96 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~-cpVlvV 143 (144)
T PRK15005 96 KDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAE-CSVLVV 143 (144)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCC-CCEEEe
Confidence 3445667888899999998764 566777777655 999876
No 153
>PLN02970 serine racemase
Probab=55.76 E-value=2.1e+02 Score=28.63 Aligned_cols=119 Identities=14% Similarity=0.068 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+.+- .|..+--.-+.+.-..|++.+..-+ . .-++.+...+++++ ...++.
T Consensus 89 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~~~~~GA~Vi~~~~-----~-~~~~~~~a~~la~~-~g~~~~ 150 (328)
T PLN02970 89 ALALAAKLRGIPAYIV-----------VPKNAPACKVDAVIRYGGIITWCEP-----T-VESREAVAARVQQE-TGAVLI 150 (328)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhcCCEEEEeCC-----C-HHHHHHHHHHHHHh-cCCEEe
Confidence 3556899999999984 3333333335566778999887643 2 23455555555432 111111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHHhh----CCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLISKY----RPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iSky----RP~~PIIAVT~n~ 315 (398)
.+ |++ + +..+....-+.|+..++ ..++||+..-+|.+..-++++ .|.+.|++|-+..
T Consensus 151 ~~-~~n-------~-~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~ 212 (328)
T PLN02970 151 HP-YND-------G-RVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKG 212 (328)
T ss_pred CC-CCC-------c-chhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECC
Confidence 11 111 1 11222223355666665 478999999999998776665 8999999998854
No 154
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=55.70 E-value=36 Score=33.05 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=38.0
Q ss_pred HHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEE
Q psy259 139 DEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCV 217 (398)
Q Consensus 139 deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~v 217 (398)
+.+++. .|+|||| |=+|++ .+++. .+++++++...|++. .|.. + +.|-.++|++
T Consensus 26 ~~~~~~gtdai~vG-GS~~vt--~~~~~----~~v~~ik~~~lPvil------------fp~~-----~-~~i~~~aDa~ 80 (232)
T PRK04169 26 EAICESGTDAIIVG-GSDGVT--EENVD----ELVKAIKEYDLPVIL------------FPGN-----I-EGISPGADAY 80 (232)
T ss_pred HHHHhcCCCEEEEc-CCCccc--hHHHH----HHHHHHhcCCCCEEE------------eCCC-----c-cccCcCCCEE
Confidence 566666 8999999 766666 34443 345555668899997 2443 3 3456789998
Q ss_pred Ee
Q psy259 218 ML 219 (398)
Q Consensus 218 mL 219 (398)
+.
T Consensus 81 l~ 82 (232)
T PRK04169 81 LF 82 (232)
T ss_pred EE
Confidence 76
No 155
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=55.65 E-value=20 Score=34.58 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=54.7
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
..+++. +.+.+.++.|.+.-+... -+|+++++.. .|.|+.+=.+ +.....+.+.|++.++|+|.+
T Consensus 68 e~~~~~--l~~inP~~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD~----------~~~k~~L~~~c~~~~ip~I~s- 133 (231)
T cd00755 68 EVMAER--IRDINPECEVDAVEEFLT-PDNSEDLLGGDPDFVVDAIDS----------IRAKVALIAYCRKRKIPVISS- 133 (231)
T ss_pred HHHHHH--HHHHCCCcEEEEeeeecC-HhHHHHHhcCCCCEEEEcCCC----------HHHHHHHHHHHHHhCCCEEEE-
Confidence 444555 555566666655433322 2578888753 7888877332 224456889999999999975
Q ss_pred hhhHHhhcCCCCCchhhhhHHHH
Q psy259 187 QMLESMIKKPRATRAEISDVANA 209 (398)
Q Consensus 187 QmLeSMi~~~~PtraEvsDVana 209 (398)
-+.=.+..||+-++.|+...
T Consensus 134 ---~g~g~~~dp~~i~i~di~~t 153 (231)
T cd00755 134 ---MGAGGKLDPTRIRVADISKT 153 (231)
T ss_pred ---eCCcCCCCCCeEEEccEecc
Confidence 11223467999999998655
No 156
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=55.62 E-value=2e+02 Score=27.75 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=75.1
Q ss_pred HHHhcHHHHHHh-----cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhh-cCCCCCc-hhhhh
Q psy259 133 QGVKNLDEIIAE-----ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMI-KKPRATR-AEISD 205 (398)
Q Consensus 133 ~~v~n~deIl~~-----sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi-~~~~Ptr-aEvsD 205 (398)
.++++++++++. .|+|++.+|-+..-... ...+.++++ . +++-. .-..|+. .-+..
T Consensus 33 ~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~~~~~--------------~~~~~~~~~--~-~~~~~~~g~~~~~~~~~~~ 95 (258)
T TIGR01949 33 KGLVDIRKTVNEVAEGGADAVLLHKGIVRRGHRG--------------YGKDVGLII--H-LSASTSLSPDPNDKRIVTT 95 (258)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEeCcchhhhcccc--------------cCCCCcEEE--E-EcCCCCCCCCCCcceeeee
Confidence 456666666654 79999998865331110 012445443 1 21111 1111222 33456
Q ss_pred HHHHHHhCCcEEEecCccCCC-CChHHHHHHHHHHHHHHHhh-hhh-hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC
Q psy259 206 VANAVLDGADCVMLSGETAKG-DYPVECVRAMHNTCKEAEAA-IWH-TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF 282 (398)
Q Consensus 206 Vanav~dG~D~vmLS~ETA~G-~yP~eaV~~m~~I~~~aE~~-~~~-~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~ 282 (398)
|..|+..|+|+|.+--= .| ....+.++.+..++..+.+. ... -..+.. . ........+.+.. +++.+.+.+
T Consensus 96 v~~al~~Ga~~v~~~~~--~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~-G--vh~~~~~~~~~~~-~~~~a~~~G 169 (258)
T TIGR01949 96 VEDAIRMGADAVSIHVN--VGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPR-G--PHIDDRDPELVAH-AARLGAELG 169 (258)
T ss_pred HHHHHHCCCCEEEEEEe--cCCchHHHHHHHHHHHHHHHHHcCCCEEEEEecc-C--cccccccHHHHHH-HHHHHHHHC
Confidence 88999999999888421 11 23356666666666665542 000 000100 0 0011111234433 346667789
Q ss_pred CcEEEEECCCchHHHHHHhhC--CCCCEEEE
Q psy259 283 AGAIVVLTTTGTSARLISKYR--PRCPIISV 311 (398)
Q Consensus 283 A~aIIv~T~SG~tA~~iSkyR--P~~PIIAV 311 (398)
|+.|-+-.. | ....+.+.. .++||++.
T Consensus 170 ADyikt~~~-~-~~~~l~~~~~~~~iPVva~ 198 (258)
T TIGR01949 170 ADIVKTPYT-G-DIDSFRDVVKGCPAPVVVA 198 (258)
T ss_pred CCEEeccCC-C-CHHHHHHHHHhCCCcEEEe
Confidence 997765432 2 222333332 35888874
No 157
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=55.53 E-value=39 Score=27.99 Aligned_cols=60 Identities=25% Similarity=0.282 Sum_probs=44.9
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
..++++ +.+.|-+..+.+ -++.++++.+...|.|+++ +.+...++++-+.+...|+||.+
T Consensus 21 ~k~~~~--~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 21 NKMNKA--AEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHH--HHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEE
Confidence 567777 777776654444 2555666666778999987 56667888999999999999997
No 158
>PRK08638 threonine dehydratase; Validated
Probab=55.19 E-value=1.9e+02 Score=29.30 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+++- .|..+--.-+...-..||+.+... | ..-++++.+.+++++- ..+ +
T Consensus 89 alA~~aa~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~-----~-~~~~~~~~a~~~a~~~-g~~-~ 149 (333)
T PRK08638 89 GVALSCALLGIDGKVV-----------MPKGAPKSKVAATCGYGAEVVLHG-----D-NFNDTIAKVEEIVEEE-GRT-F 149 (333)
T ss_pred HHHHHHHHcCCCEEEE-----------eCCCCcHHHHHHHHHcCCEEEEEC-----c-CHHHHHHHHHHHHHhc-CCE-E
Confidence 4566899999999984 343333344556667899988652 2 3457777777776652 222 1
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHHhh----CCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLISKY----RPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iSky----RP~~PIIAVT~n~ 315 (398)
..-|++ + ...+.-...+-|+..++ +.++||+..-+|.+..-++++ .|.+.|++|=+..
T Consensus 150 ~~~~~~-------~-~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g 212 (333)
T PRK08638 150 IPPYDD-------P-KVIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSEN 212 (333)
T ss_pred cCcCCC-------c-chhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 111211 1 11111122344444444 579999999999998777765 8999999998753
No 159
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=54.84 E-value=60 Score=32.96 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=63.4
Q ss_pred HHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-----cCeeEEcCCC-----C----------CCCCChhhHHH
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-----ADGIMVARGD-----L----------GIEIPPWKVFL 166 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-----sDgimvaRgD-----L----------g~e~~~~~v~~ 166 (398)
+..+|+. +++...++.|++||----..+++.++++. +|||.+.=+- + |++ +.+--+.
T Consensus 198 v~aVr~~--~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S-G~~~~~~ 274 (344)
T PRK05286 198 LAALKEA--QAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS-GRPLFER 274 (344)
T ss_pred HHHHHHH--HhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc-cHHHHHH
Confidence 3555655 43211158999999732222234444443 7999885321 1 111 1222234
Q ss_pred HHHHHHHHHHHc--CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCC-CCChHHHHHHHHHHHHHH
Q psy259 167 AQKQMIAKCNKV--GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAK-GDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 167 ~qk~ii~~c~~~--gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~-G~yP~eaV~~m~~I~~~a 243 (398)
..+.+-...+.. +.|+|...- .-| ..|+...+..|||+||+..-.-. | | ....+|+++.
T Consensus 275 ~l~~v~~l~~~~~~~ipIig~GG---------I~s---~eda~e~l~aGAd~V~v~~~~~~~g--P----~~~~~i~~~L 336 (344)
T PRK05286 275 STEVIRRLYKELGGRLPIIGVGG---------IDS---AEDAYEKIRAGASLVQIYSGLIYEG--P----GLVKEIVRGL 336 (344)
T ss_pred HHHHHHHHHHHhCCCCCEEEECC---------CCC---HHHHHHHHHcCCCHHHHHHHHHHhC--c----hHHHHHHHHH
Confidence 444444444444 578886432 222 35889999999999999643322 2 2 2345566655
Q ss_pred Hhh
Q psy259 244 EAA 246 (398)
Q Consensus 244 E~~ 246 (398)
+..
T Consensus 337 ~~~ 339 (344)
T PRK05286 337 ARL 339 (344)
T ss_pred HHH
Confidence 543
No 160
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=54.81 E-value=61 Score=30.23 Aligned_cols=117 Identities=13% Similarity=0.214 Sum_probs=70.5
Q ss_pred cccceeEEEeCCCCCCHHHHHHHHHhcccc-cccCCCCCCCCCCCCCCCCC-CCcccH---HH-----HHHHHHHhhchh
Q psy259 49 VRLTGIICTIGPASVAVDMLEKIIETESNS-DECSEKPRECPSEPEPPHCK-EPNLYE---SN-----VRLIEKLMATGE 118 (398)
Q Consensus 49 ~r~t~Iictigp~~~~~e~l~~~i~~Gmnv-r~~~~~~~pgp~~~~~~k~~-~~~~~v---dd-----V~~ir~~~~l~~ 118 (398)
.++++|.- +|...---|.++.|..+|..- .-+..+ ...+.+- ..++|- +| +..+++. |.+
T Consensus 17 L~~s~Vlv-iG~gglGsevak~L~~~GVg~i~lvD~d-------~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~--L~~ 86 (198)
T cd01485 17 LRSAKVLI-IGAGALGAEIAKNLVLAGIDSITIVDHR-------LVSTEDLGSNFFLDAEVSNSGMNRAAASYEF--LQE 86 (198)
T ss_pred HhhCcEEE-ECCCHHHHHHHHHHHHcCCCEEEEEECC-------cCChhcCcccEecccchhhcCchHHHHHHHH--HHH
Confidence 34455443 687777889999999999642 111111 0010100 111111 22 2344445 666
Q ss_pred cCCcccEEEeecChHH-HhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 119 QGKHIKIIAKIENHQG-VKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 119 ~~~~~~iiaKIE~~~~-v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
.+.++.|.+.-|+... .++.++++...|.|+.+-.+ +.....+-+.|+++++|++.+
T Consensus 87 lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 87 LNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 6788888876665532 46778888889999987332 234455778999999999986
No 161
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=54.29 E-value=1.2e+02 Score=28.76 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=52.6
Q ss_pred cChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHH-------------HHHHHHHHHHHcCCCEEEeehhhHHhhcCC
Q psy259 130 ENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFL-------------AQKQMIAKCNKVGKPVICATQMLESMIKKP 196 (398)
Q Consensus 130 E~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~-------------~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~ 196 (398)
-++.+++.|.++.+.-+.++||=|= =+..+.+.. .-..+++.|+++|.|++
T Consensus 42 ~t~~a~~~i~~l~~~~~~~~vGAGT---Vl~~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~i------------- 105 (204)
T TIGR01182 42 RTPVALDAIRLLRKEVPDALIGAGT---VLNPEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGIPII------------- 105 (204)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEe---CCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcEE-------------
Confidence 6777888888888776678887661 122233322 24589999999999998
Q ss_pred CCCchhhhhHHHHHHhCCcEEEe
Q psy259 197 RATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 197 ~PtraEvsDVanav~dG~D~vmL 219 (398)
|--.=-|++..|...|+|.|=|
T Consensus 106 -PG~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 106 -PGVATPSEIMLALELGITALKL 127 (204)
T ss_pred -CCCCCHHHHHHHHHCCCCEEEE
Confidence 3333346779999999999998
No 162
>TIGR03586 PseI pseudaminic acid synthase.
Probab=54.08 E-value=1.1e+02 Score=31.18 Aligned_cols=88 Identities=25% Similarity=0.327 Sum_probs=59.4
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
+..++.++ -.+ ..+.+++-.=..+++ |.+.+. .|.+=||-||+. .+| +++++.+.|||||+
T Consensus 78 ~~~~L~~~--~~~--~Gi~~~stpfd~~sv---d~l~~~~v~~~KI~S~~~~-n~~----------LL~~va~~gkPvil 139 (327)
T TIGR03586 78 WHKELFER--AKE--LGLTIFSSPFDETAV---DFLESLDVPAYKIASFEIT-DLP----------LIRYVAKTGKPIIM 139 (327)
T ss_pred HHHHHHHH--HHH--hCCcEEEccCCHHHH---HHHHHcCCCEEEECCcccc-CHH----------HHHHHHhcCCcEEE
Confidence 44556555 433 357888866555555 555556 899999999882 222 55667788999999
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHH-hCC-cEEEec
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVL-DGA-DCVMLS 220 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~-dG~-D~vmLS 220 (398)
.|-| .|-.|+......+. .|. |.++|=
T Consensus 140 stG~---------~t~~Ei~~Av~~i~~~g~~~i~Llh 168 (327)
T TIGR03586 140 STGI---------ATLEEIQEAVEACREAGCKDLVLLK 168 (327)
T ss_pred ECCC---------CCHHHHHHHHHHHHHCCCCcEEEEe
Confidence 7665 46788888888886 466 444443
No 163
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=54.06 E-value=64 Score=30.64 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEe
Q psy259 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 165 ~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmL 219 (398)
......+++.++++|++|++-|- + +..+...++..|+|+|+-
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtv------n-------~~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTV------N-------DPEDMARLIDLGVDGIIT 258 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecC------C-------CHHHHHHHHHcCCCEEEc
Confidence 34567899999999999999772 1 124567888899999974
No 164
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=54.04 E-value=85 Score=32.12 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhhchhcCCcccEEEeec-ChHHHhcHHHHHHh-cCeeEEcCCCCC---------------CCCChhhHH
Q psy259 103 YESNVRLIEKLMATGEQGKHIKIIAKIE-NHQGVKNLDEIIAE-ADGIMVARGDLG---------------IEIPPWKVF 165 (398)
Q Consensus 103 ~vddV~~ir~~~~l~~~~~~~~iiaKIE-~~~~v~n~deIl~~-sDgimvaRgDLg---------------~e~~~~~v~ 165 (398)
|++.++++|+. + ++.|+.|+= +-...+....+.+. +|+|-|+ |--| ..-.....-
T Consensus 174 ~le~i~~i~~~--~-----~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs-g~GGt~~~~ie~~R~~~~~~~~~~~~~g 245 (352)
T PRK05437 174 WLDNIAEIVSA--L-----PVPVIVKEVGFGISKETAKRLADAGVKAIDVA-GAGGTSWAAIENYRARDDRLASYFADWG 245 (352)
T ss_pred HHHHHHHHHHh--h-----CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC-CCCCCCccchhhhhhhcccccccccccc
Q ss_pred HHHHHHHHHHHHc--CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCC---CChHHHHHHHHHHH
Q psy259 166 LAQKQMIAKCNKV--GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKG---DYPVECVRAMHNTC 240 (398)
Q Consensus 166 ~~qk~ii~~c~~~--gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G---~yP~eaV~~m~~I~ 240 (398)
...-..+..+++. +.|+|...-+-... ||..++..|||+|+++.---.+ .=+...++++.++.
T Consensus 246 ~pt~~~l~~i~~~~~~ipvia~GGI~~~~------------dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~ 313 (352)
T PRK05437 246 IPTAQSLLEARSLLPDLPIIASGGIRNGL------------DIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWI 313 (352)
T ss_pred CCHHHHHHHHHHhcCCCeEEEECCCCCHH------------HHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHH
Q ss_pred HHHHhhh
Q psy259 241 KEAEAAI 247 (398)
Q Consensus 241 ~~aE~~~ 247 (398)
.+....+
T Consensus 314 ~eL~~~m 320 (352)
T PRK05437 314 EELKIAM 320 (352)
T ss_pred HHHHHHH
No 165
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=53.69 E-value=1.8e+02 Score=28.58 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCCh-HHHHHHHHHHHHHHHhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYP-VECVRAMHNTCKEAEAAIW 248 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP-~eaV~~m~~I~~~aE~~~~ 248 (398)
.+...|+..|.|+.+. .|..+...-+...-..|++.+..-+ .|. .++++...+++++-...++
T Consensus 72 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 135 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTPA-----EEGMKGAIDKAEELAAETNKYVM 135 (299)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC-----CCChHHHHHHHHHHHhhCCCeEe
Confidence 4556789999999884 4555555556677789999877643 221 3455544444332111111
Q ss_pred hhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCchHHHH----HHhhCCCCCEEEEeCCh
Q psy259 249 HTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF--AGAIVVLTTTGTSARL----ISKYRPRCPIISVTRFP 315 (398)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~--A~aIIv~T~SG~tA~~----iSkyRP~~PIIAVT~n~ 315 (398)
..+ |++ +..+..-....+.|+..+++ .+.||+..-+|.++.- +..++|...|++|-+..
T Consensus 136 ~~~-~~~-------~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~ 200 (299)
T TIGR01136 136 LDQ-FEN-------PANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAE 200 (299)
T ss_pred cCC-CCC-------chhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 110 110 11111112334557777764 8999998889988744 44567999999999854
No 166
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=53.53 E-value=56 Score=28.00 Aligned_cols=61 Identities=30% Similarity=0.355 Sum_probs=48.0
Q ss_pred HHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
|..+++. ...+|.++.|-|.=|+ .+++-+...|.+++| +.+-..-+++-+.+...|+||-+
T Consensus 18 V~Km~~a--A~~kg~~~~I~A~s~~-----e~~~~~~~~DvvLlG----------PQv~y~~~~~~~~~~~~giPV~v 78 (102)
T COG1440 18 VTKMKKA--AESKGKDVTIEAYSET-----ELSEYIDNADVVLLG----------PQVRYMLKQLKEAAEEKGIPVEV 78 (102)
T ss_pred HHHHHHH--HHhCCCceEEEEechh-----HHHHhhhcCCEEEEC----------hHHHHHHHHHHHHhcccCCCeEE
Confidence 4667777 7788999999887666 355555689999998 55666667888999999999987
No 167
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=53.28 E-value=68 Score=27.22 Aligned_cols=74 Identities=28% Similarity=0.265 Sum_probs=53.3
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHH--hcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIA--EADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~--~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..++++ +.+.|-++.|-+ -++.++++.+. -.|.|+++ +.+-..++.+-+.|...|+||.+
T Consensus 19 ~k~k~~--~~e~gi~~~i~a-----~~~~e~~~~~~~~~~DvIll~----------PQi~~~~~~i~~~~~~~~ipv~~- 80 (104)
T PRK09590 19 KKTTEY--LKEQGKDIEVDA-----ITATEGEKAIAAAEYDLYLVS----------PQTKMYFKQFEEAGAKVGKPVVQ- 80 (104)
T ss_pred HHHHHH--HHHCCCceEEEE-----ecHHHHHHhhccCCCCEEEEC----------hHHHHHHHHHHHHhhhcCCCEEE-
Confidence 566777 777776655443 24556666654 37999987 67777888899999999999997
Q ss_pred ehhhHHhhcCCCCCchh
Q psy259 186 TQMLESMIKKPRATRAE 202 (398)
Q Consensus 186 TQmLeSMi~~~~PtraE 202 (398)
.+...+.|.|-.+|
T Consensus 81 ---I~~~~Y~~~~~~~~ 94 (104)
T PRK09590 81 ---IPPQAYIPIPMGIE 94 (104)
T ss_pred ---eCHHHcCCCccCHH
Confidence 56666777776554
No 168
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=53.22 E-value=45 Score=30.46 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=43.6
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc-CCCEEEee
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV-GKPVICAT 186 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~AT 186 (398)
..+++. |.+.+..+.+.+--+..+. +|++++++-.|.|+.+-.++ ...+.+...|.+. ++|+|.+.
T Consensus 55 ~~~~~~--l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~~----------~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 55 EALKEN--LREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDNA----------ETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHH--HHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCCH----------HHHHHHHHHHHHHCCCCEEEEe
Confidence 444555 6666777777664444333 67888988899888773322 2345577777776 99999873
No 169
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=53.20 E-value=84 Score=30.85 Aligned_cols=104 Identities=21% Similarity=0.384 Sum_probs=59.0
Q ss_pred CHHHHHHHHHhcccccc----cCCCCCCCCC------CCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEee--cC
Q psy259 64 AVDMLEKIIETESNSDE----CSEKPRECPS------EPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKI--EN 131 (398)
Q Consensus 64 ~~e~l~~~i~~Gmnvr~----~~~~~~pgp~------~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKI--E~ 131 (398)
+.+.++.|.+.|.++-+ ||....=||. ..+.+..+-+-+ . ..++++ .++..+++++.+- ..
T Consensus 28 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~-~---~~~~~~---r~~~~~~p~vlm~Y~N~ 100 (258)
T PRK13111 28 SLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADV-F---ELVREI---REKDPTIPIVLMTYYNP 100 (258)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHH-H---HHHHHH---HhcCCCCCEEEEecccH
Confidence 45568889999999977 6652111772 112211111111 1 333333 2223355555443 21
Q ss_pred --hHHHhcHHHHHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 132 --HQGVKNLDEIIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 132 --~~~v~n~deIl~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
+.|++++-+-++. +||++|. || |+++ .+....+|+++|...|.
T Consensus 101 i~~~G~e~f~~~~~~aGvdGviip--DL----p~ee----~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 101 IFQYGVERFAADAAEAGVDGLIIP--DL----PPEE----AEELRAAAKKHGLDLIF 147 (258)
T ss_pred HhhcCHHHHHHHHHHcCCcEEEEC--CC----CHHH----HHHHHHHHHHcCCcEEE
Confidence 3478877555555 7999995 55 5543 45778899999976664
No 170
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=53.08 E-value=20 Score=30.20 Aligned_cols=52 Identities=10% Similarity=0.163 Sum_probs=37.5
Q ss_pred CCcEEEEECCCchHHHH-----HHhhCCCCCEEEEeCChhhhhhccccccceEEecCCC
Q psy259 282 FAGAIVVLTTTGTSARL-----ISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEP 335 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~-----iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~ 335 (398)
.-+.+|++|.||.|... .+|.| .+|||++|.+.. ..+++--+|.+-+..+..
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~-g~~iI~IT~~~~-l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER-GAKIVAITSGGK-LLEMAREHGVPVIIIPKG 99 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEeCCch-HHHHHHHcCCcEEECCCC
Confidence 44789999999998754 34555 699999998775 444666667766666553
No 171
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.96 E-value=16 Score=36.36 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=30.1
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTR 313 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~ 313 (398)
...++.+||-|.+|.||..+|- -.|.++.+.+||
T Consensus 174 ~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~ltP 211 (287)
T PRK14077 174 EYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTP 211 (287)
T ss_pred EEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEEEe
Confidence 3568999999999999999997 558899999998
No 172
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.61 E-value=17 Score=35.90 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=30.4
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTR 313 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~ 313 (398)
...++.+||-|.+|.||..+|- .-|.++.+.+||
T Consensus 134 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itP 171 (259)
T PRK00561 134 KYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIE 171 (259)
T ss_pred EEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEe
Confidence 3578999999999999999997 567999999999
No 173
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=52.33 E-value=46 Score=38.39 Aligned_cols=88 Identities=19% Similarity=0.051 Sum_probs=65.9
Q ss_pred cccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCC------------------------CCCh-----hhHHHHHHHHH
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGI------------------------EIPP-----WKVFLAQKQMI 172 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~------------------------e~~~-----~~v~~~qk~ii 172 (398)
+++|=.+||.|.|.--.|+|.+.+|.+=||=.||.- .=|+ +-|-...++.+
T Consensus 738 ~~~vG~MIEvP~Aal~ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v 817 (879)
T PRK09279 738 DYKVGTMIELPRAALTADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAV 817 (879)
T ss_pred CceEEEEEehHHHHHhHHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHH
Confidence 578999999999999999999999999998776631 1122 35778888999
Q ss_pred HHHHH--cCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 173 AKCNK--VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 173 ~~c~~--~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
++|++ .|+||.++-+| ...|.- +.-.+.-|.|-|-.|
T Consensus 818 ~~~r~~~~~~~vgICGE~------ggdp~~-----i~~l~~lGld~vS~s 856 (879)
T PRK09279 818 ERGRATRPDLKLGICGEH------GGDPAS-----IEFCHKVGLDYVSCS 856 (879)
T ss_pred HHHHhcCCCCEEEECCCC------ccCHHH-----HHHHHHCCCCEEEEC
Confidence 99998 79999987654 123333 245566677777776
No 174
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.22 E-value=1.4e+02 Score=28.51 Aligned_cols=91 Identities=12% Similarity=0.165 Sum_probs=58.3
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhH-------------HHHHHHHHHHHHHcCCCE
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV-------------FLAQKQMIAKCNKVGKPV 182 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v-------------~~~qk~ii~~c~~~gkpv 182 (398)
|-+.|-++.=|. .-++++++.+.++.+.-..++|+=|= -+..+.+ |..-..+++.|++.|.|.
T Consensus 36 l~~~Gi~~iEit-l~~~~~~~~I~~l~~~~p~~~IGAGT---Vl~~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~ 111 (212)
T PRK05718 36 LVAGGLPVLEVT-LRTPAALEAIRLIAKEVPEALIGAGT---VLNPEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPL 111 (212)
T ss_pred HHHcCCCEEEEe-cCCccHHHHHHHHHHHCCCCEEEEee---ccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCE
Confidence 444443333333 66778888888888776667777551 1111222 223347899999999999
Q ss_pred EEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHH
Q psy259 183 ICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVEC 232 (398)
Q Consensus 183 i~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~ea 232 (398)
+- --.-.|++..|...|+|.|-| ||.++
T Consensus 112 iP--------------G~~TptEi~~a~~~Ga~~vKl--------FPa~~ 139 (212)
T PRK05718 112 IP--------------GVSTPSELMLGMELGLRTFKF--------FPAEA 139 (212)
T ss_pred eC--------------CCCCHHHHHHHHHCCCCEEEE--------ccchh
Confidence 82 112223478899999999999 78554
No 175
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=52.18 E-value=1.7e+02 Score=28.54 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=68.3
Q ss_pred cccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCC
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPR 197 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~ 197 (398)
+.++.+..-... .+++.|... .|.|.|+ ++...+ ..-+.+++.++++|..|.+. +....+
T Consensus 71 ~~~~~~~~~~~~--~~~~~l~~a~~~gv~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~------~~~a~~ 134 (266)
T cd07944 71 NTKIAVMVDYGN--DDIDLLEPASGSVVDMIRVA-------FHKHEF-DEALPLIKAIKEKGYEVFFN------LMAISG 134 (266)
T ss_pred CCEEEEEECCCC--CCHHHHHHHhcCCcCEEEEe-------cccccH-HHHHHHHHHHHHCCCeEEEE------EEeecC
Confidence 577777665542 234444433 4666665 233333 44467789999999877764 223344
Q ss_pred CCchhhhhHHHHHH-hCCcEEEecCccCCCCChHHHHHHHHHHHHHH
Q psy259 198 ATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 198 PtraEvsDVanav~-dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~a 243 (398)
-+..++-+++..+. .|+|.+.|. +|.=..+|.+.-+....+....
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIV-DSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhc
Confidence 56777777775544 599999996 7888889998777777766533
No 176
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=52.01 E-value=24 Score=34.09 Aligned_cols=108 Identities=20% Similarity=0.186 Sum_probs=66.4
Q ss_pred HHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHh
Q psy259 133 QGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD 212 (398)
Q Consensus 133 ~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~d 212 (398)
++++|+.+|-+..|.-+||= |++ .--+-||.+ .||.-||.+++++
T Consensus 53 ~gv~dIkai~~~v~vPIIGI-------------------iKr-d~~~s~v~I------------TptlkeVd~L~~~--- 97 (229)
T COG3010 53 EGVEDIKAIRAVVDVPIIGI-------------------IKR-DYPDSPVRI------------TPTLKEVDALAEA--- 97 (229)
T ss_pred cchhhHHHHHhhCCCCeEEE-------------------Eec-CCCCCCcee------------cccHHHHHHHHHC---
Confidence 48999999999999888761 100 112345665 6999999999988
Q ss_pred CCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEECCC
Q psy259 213 GADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTT 292 (398)
Q Consensus 213 G~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~S 292 (398)
|+|-|-+-+ ..-.-|.+ .+..++.. +++. .+++ .. .-.+..| ...|.+++++ ||=-|-|
T Consensus 98 Ga~IIA~Da--T~R~RP~~---~~~~~i~~-~k~~--~~l~---MA---D~St~ee------~l~a~~~G~D-~IGTTLs 156 (229)
T COG3010 98 GADIIAFDA--TDRPRPDG---DLEELIAR-IKYP--GQLA---MA---DCSTFEE------GLNAHKLGFD-IIGTTLS 156 (229)
T ss_pred CCcEEEeec--ccCCCCcc---hHHHHHHH-hhcC--CcEE---Ee---ccCCHHH------HHHHHHcCCc-EEecccc
Confidence 999999854 33344654 34555554 3321 1111 00 0112223 3356788988 6667889
Q ss_pred chHH
Q psy259 293 GTSA 296 (398)
Q Consensus 293 G~tA 296 (398)
|+|-
T Consensus 157 GYT~ 160 (229)
T COG3010 157 GYTG 160 (229)
T ss_pred cccC
Confidence 9886
No 177
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=51.67 E-value=47 Score=31.49 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=44.6
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..+++. |.+.+.++.|-+--+.. .-+|+++++.-.|.|+.+-.+. .....+-+.|+++++|+|.+
T Consensus 78 ~~~~~~--l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~----------~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 78 EAAAER--LRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNF----------ATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHH--HHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 444555 55556666665543333 2368888888899999884432 23457888999999999986
No 178
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.12 E-value=17 Score=36.67 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=30.5
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRF 314 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n 314 (398)
+..++.+|+-|.||.||..+|- -.|.++.+.+||-
T Consensus 182 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI 220 (306)
T PRK03372 182 SFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPL 220 (306)
T ss_pred EEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEec
Confidence 4578999999999999999997 4578999999983
No 179
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=51.07 E-value=51 Score=32.37 Aligned_cols=83 Identities=25% Similarity=0.285 Sum_probs=51.8
Q ss_pred cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccC
Q psy259 145 ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224 (398)
Q Consensus 145 sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA 224 (398)
+..||.-=.-.|--.|...- ...+.|+ .+...|||+ ....=+ -||++.|...|+|+|++-.--|
T Consensus 145 caavMPlgsPIGSg~Gi~n~-~~l~~i~---~~~~vPvIv---------DAGiG~---pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQNP-YNLRIII---ERADVPVIV---------DAGIGT---PSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SSTH-HHHHHHH---HHGSSSBEE---------ES---S---HHHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCCH-HHHHHHH---HhcCCcEEE---------eCCCCC---HHHHHHHHHcCCceeehhhHHh
Confidence 67888754444444444332 3344444 445999998 333332 2688999999999999988889
Q ss_pred CCCChHHHHHHHHHHHHHH
Q psy259 225 KGDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 225 ~G~yP~eaV~~m~~I~~~a 243 (398)
..+.|+.-.+.|+.-++.-
T Consensus 209 ~A~dPv~MA~Af~~AV~AG 227 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVEAG 227 (247)
T ss_dssp TSSSHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 9999988666665554433
No 180
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=50.90 E-value=50 Score=31.22 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=44.2
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc-CCCEEEee
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV-GKPVICAT 186 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~AT 186 (398)
..+++. +.+.+..+.+-+.-+.... +|++++++-.|.|+-+-. .. .....+...|.+. ++|+|.++
T Consensus 84 ~~a~~~--l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~D---------~~-~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 84 EALKEN--LLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEAFD---------NA-ETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHH--HHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEECCC---------CH-HHHHHHHHHHHHhCCCCEEEee
Confidence 344444 5555677777665555444 578888888898887722 11 1334677889998 99999874
No 181
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=50.77 E-value=45 Score=32.21 Aligned_cols=118 Identities=13% Similarity=0.147 Sum_probs=66.0
Q ss_pred ccccceeEEEeCCCCCCHHHHHHHHHhccc-ccccCCCCCCCCCCCCCCCCCCCccc-HH-----HHHHHHHHhhchhcC
Q psy259 48 YVRLTGIICTIGPASVAVDMLEKIIETESN-SDECSEKPRECPSEPEPPHCKEPNLY-ES-----NVRLIEKLMATGEQG 120 (398)
Q Consensus 48 ~~r~t~Iictigp~~~~~e~l~~~i~~Gmn-vr~~~~~~~pgp~~~~~~k~~~~~~~-vd-----dV~~ir~~~~l~~~~ 120 (398)
..++++| +=+|.-.---+.++.|..+|.. +.-+..+. ..++.+ ...++| -+ =+..+++. |.+.+
T Consensus 29 ~L~~~~V-liiG~GglGs~va~~La~~Gvg~i~lvD~D~-ve~sNL-----~Rq~l~~~~dvG~~Ka~~a~~~--l~~ln 99 (245)
T PRK05690 29 KLKAARV-LVVGLGGLGCAASQYLAAAGVGTLTLVDFDT-VSLSNL-----QRQVLHDDATIGQPKVESARAA--LARIN 99 (245)
T ss_pred HhcCCeE-EEECCCHHHHHHHHHHHHcCCCEEEEEcCCE-ECcchh-----hhhhcCChhhCCChHHHHHHHH--HHHHC
Confidence 3344443 3367655666788888888842 11111110 000000 012222 11 23444555 56667
Q ss_pred CcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 121 KHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 121 ~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
.++.|.+.-+..+ -+|++++++-.|-|+.+-.+ +.....+-+.|+++++|++.+
T Consensus 100 p~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D~----------~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 100 PHIAIETINARLD-DDELAALIAGHDLVLDCTDN----------VATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCCEEEEEeccCC-HHHHHHHHhcCCEEEecCCC----------HHHHHHHHHHHHHhCCEEEEe
Confidence 7777766444332 25788899989988877322 134567888999999999975
No 182
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.72 E-value=16 Score=36.47 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=30.0
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTR 313 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~ 313 (398)
...++.+||-|.||.||..+|- -.|.++.+.+||
T Consensus 173 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltP 210 (292)
T PRK01911 173 SYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITP 210 (292)
T ss_pred EEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEe
Confidence 4578999999999999999997 457899999997
No 183
>PRK06815 hypothetical protein; Provisional
Probab=50.56 E-value=2.1e+02 Score=28.50 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+.+- .|..+.-.-+...-..|++.+...++ ..++.+...+++++- ..+ +
T Consensus 82 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~V~~~~~~------~~~~~~~a~~~~~~~-~~~-~ 142 (317)
T PRK06815 82 GVALAAKLAGIPVTVY-----------APEQASAIKLDAIRALGAEVRLYGGD------ALNAELAARRAAEQQ-GKV-Y 142 (317)
T ss_pred HHHHHHHHhCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhc-CCE-E
Confidence 3667899999999984 23333334456667789999988653 345555554443321 111 1
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHH----HHhhCCCCCEEEEeCChh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARL----ISKYRPRCPIISVTRFPQ 316 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~----iSkyRP~~PIIAVT~n~~ 316 (398)
..-|+. + +..+.....+.++..++ ..++||+..-+|.+.-- +..+.|...|++|.+...
T Consensus 143 ~~~~~~-------~-~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~ 206 (317)
T PRK06815 143 ISPYND-------P-QVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANS 206 (317)
T ss_pred ecCCCC-------h-hhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 111110 0 11122233455666665 47899999999987654 444669999999998653
No 184
>PLN02535 glycolate oxidase
Probab=49.89 E-value=2.1e+02 Score=29.74 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhchhcCCcccEEEe-ecChHHHhcHHHHHHh-cCeeEEcCCCCCCC--CChhhHHHHHHHHHHHHHHcCC
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIAK-IENHQGVKNLDEIIAE-ADGIMVARGDLGIE--IPPWKVFLAQKQMIAKCNKVGK 180 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iiaK-IE~~~~v~n~deIl~~-sDgimvaRgDLg~e--~~~~~v~~~qk~ii~~c~~~gk 180 (398)
+||..+|+. . +.+||.| |-+++- ....++. +|+|.|.- --|-. ..+..+ ..-.++.+.+ ....
T Consensus 213 ~~i~~lr~~--~-----~~PvivKgV~~~~d---A~~a~~~GvD~I~vsn-~GGr~~d~~~~t~-~~L~ev~~av-~~~i 279 (364)
T PLN02535 213 KDIEWLRSI--T-----NLPILIKGVLTRED---AIKAVEVGVAGIIVSN-HGARQLDYSPATI-SVLEEVVQAV-GGRV 279 (364)
T ss_pred HHHHHHHhc--c-----CCCEEEecCCCHHH---HHHHHhcCCCEEEEeC-CCcCCCCCChHHH-HHHHHHHHHH-hcCC
Confidence 478888876 3 4678887 544433 2233334 89998861 11211 111111 1111111111 1248
Q ss_pred CEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCcc
Q psy259 181 PVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGET 223 (398)
Q Consensus 181 pvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ET 223 (398)
|||.. ...-+ -.||+.|+..|||+|++..--
T Consensus 280 pVi~d---------GGIr~---g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 280 PVLLD---------GGVRR---GTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred CEEee---------CCCCC---HHHHHHHHHcCCCEEEECHHH
Confidence 88863 22222 469999999999999996543
No 185
>PLN02565 cysteine synthase
Probab=49.88 E-value=1.6e+02 Score=29.67 Aligned_cols=122 Identities=12% Similarity=0.072 Sum_probs=73.8
Q ss_pred HHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhh
Q psy259 171 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 250 (398)
Q Consensus 171 ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 250 (398)
+...|+..|.|+.+- .|..+.-.-+...-..|++.++--.+ . ..-++++...++.++-...++-.
T Consensus 82 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~--~~~~~~~~a~~l~~~~~~~~~~~ 146 (322)
T PLN02565 82 LAFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA--K--GMKGAVQKAEEILAKTPNSYILQ 146 (322)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC--C--CcHHHHHHHHHHHHhCCCcEeec
Confidence 445789999999984 56666666677788899999875322 1 22356665555554321211111
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCchHHHH----HHhhCCCCCEEEEeCCh
Q psy259 251 KLLTELKSMLPLPIDSAHSVAIAAVEAASKV--FAGAIVVLTTTGTSARL----ISKYRPRCPIISVTRFP 315 (398)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~--~A~aIIv~T~SG~tA~~----iSkyRP~~PIIAVT~n~ 315 (398)
+ |++ +.++.--...-+.++..++ ..++||+..=+|.+..- +..++|.+.|++|.+..
T Consensus 147 q-~~n-------~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~ 209 (322)
T PLN02565 147 Q-FEN-------PANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVE 209 (322)
T ss_pred c-cCC-------HhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 1 211 1011001222345555665 48999999999988754 44567999999999854
No 186
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=49.74 E-value=2.7e+02 Score=27.44 Aligned_cols=122 Identities=10% Similarity=0.018 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
.+...|+..|.|+++- .|..+...-+...-..|++.+...++ +.| -++.+...++.++-.. .|.
T Consensus 73 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~-~~~ 136 (290)
T TIGR01138 73 ALAMIAALKGYRMKLL-----------MPDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEG-KLL 136 (290)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCC-CCC
Confidence 3556899999999984 34444444556777789998887542 122 2444444444332211 111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCchHHHH----HHhhCCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF--AGAIVVLTTTGTSARL----ISKYRPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~--A~aIIv~T~SG~tA~~----iSkyRP~~PIIAVT~n~ 315 (398)
.+ |++ +..+.--....+.|+..+++ .++||+.+-+|.|+.- +..++|.+.|++|-+..
T Consensus 137 ~~-~~~-------~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~ 200 (290)
T TIGR01138 137 DQ-FNN-------PDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEE 200 (290)
T ss_pred Cc-cCC-------cccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 11 111 11111001234556666664 6899999999988754 44568999999999854
No 187
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.68 E-value=21 Score=35.29 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=38.1
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCChh-hhhhccccccceEEecCCC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRFPQ-VARQLHLHRSIIPLVYEEP 335 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~~-taRqL~L~wGV~Pvl~~~~ 335 (398)
+..++.+||-|.+|.||..+|- --|.++.+.+||=.- ..+..+... -|++.+..
T Consensus 146 ~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P~~~~~~~~l~--rpiVl~~~ 204 (264)
T PRK03501 146 TFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELASLNNNTYRTLG--SPFILSHE 204 (264)
T ss_pred EEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEeccccCccccccCC--CCEEECCC
Confidence 4578999999999999999997 457899999998443 221112212 57776654
No 188
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=49.12 E-value=2.5e+02 Score=28.64 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|++.|.|+.+. .|..+.-.-+...-..|++.+.. +. ..-++.+...+++.+-. .+ +
T Consensus 62 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~-~~-----~~~~a~~~a~~~~~~~~-~~-~ 122 (380)
T TIGR01127 62 GVAYAAKKFGIKAVIV-----------MPESAPPSKVKATKSYGAEVILH-GD-----DYDEAYAFATSLAEEEG-RV-F 122 (380)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCcHHHHHHHHHCCCEEEEE-CC-----CHHHHHHHHHHHHHhcC-CE-e
Confidence 4566899999999984 34444344566777889997764 32 24567666666654422 11 1
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCChh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLISK----YRPRCPIISVTRFPQ 316 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~~ 316 (398)
-.-|++ + .....-..-+.++..++ ..++||+..-+|.+..-+++ ++|.+.||+|-+...
T Consensus 123 ~~~~~~-------~-~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~ 186 (380)
T TIGR01127 123 VHPFDD-------E-FVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA 186 (380)
T ss_pred cCCCCC-------h-hhhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 111211 0 11111222345666665 58999999999988765554 579999999999553
No 189
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.07 E-value=21 Score=35.98 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=30.3
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTR 313 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~ 313 (398)
...++.+||-|.||.||..+|- -.|.++.+.+||
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itP 215 (305)
T PRK02649 178 DIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTP 215 (305)
T ss_pred EEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEEEe
Confidence 4578999999999999999997 567899999998
No 190
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.06 E-value=21 Score=35.34 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=30.3
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRF 314 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n 314 (398)
...++.+|+-|.+|.||..+|- -.|.++.+.+||=
T Consensus 162 ~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~vtPi 200 (277)
T PRK03708 162 EVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPL 200 (277)
T ss_pred EEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEEEec
Confidence 4578999999999999999997 4578899999983
No 191
>PRK10717 cysteine synthase A; Provisional
Probab=49.01 E-value=1.9e+02 Score=28.81 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=70.4
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+.+- .|..+.-.=+...-..|++.+...+.. ...|-..++...+++++.+.....
T Consensus 78 alA~~a~~~G~~~~vv-----------~p~~~~~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~~~a~~~a~~~~~~~~~ 144 (330)
T PRK10717 78 GLALVAAARGYKTVIV-----------MPETQSQEKKDLLRALGAELVLVPAAP--YANPNNYVKGAGRLAEELVASEPN 144 (330)
T ss_pred HHHHHHHHcCCcEEEE-----------eCCCCCHHHHHHHHHcCCEEEEeCCcc--cccccchHHHHHHHHHHHHhhCCC
Confidence 3556789999999983 233333334566677899988775320 011112344444455443221100
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCchHHHHHH----hhCCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF--AGAIVVLTTTGTSARLIS----KYRPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~--A~aIIv~T~SG~tA~~iS----kyRP~~PIIAVT~n~ 315 (398)
..++.. + ...+.....-....+.++..+++ .++||+..=+|.++.-++ .++|++.|++|-+..
T Consensus 145 ~~~~~~--~-~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~ 213 (330)
T PRK10717 145 GAIWAN--Q-FDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTG 213 (330)
T ss_pred CeEecC--C-CCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 000000 0 00011111112234566666664 799999999998876544 467999999998854
No 192
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.99 E-value=1.6e+02 Score=28.34 Aligned_cols=94 Identities=11% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeE---EcCCCCCCCCChhhHHHHHHHHHHHHHHc--C
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIM---VARGDLGIEIPPWKVFLAQKQMIAKCNKV--G 179 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgim---vaRgDLg~e~~~~~v~~~qk~ii~~c~~~--g 179 (398)
++..++.+. +.+.|-+..+...=++ -++.++.+++.+|+++ +-+|. |..+ ..-...-++..++. .
T Consensus 116 ~~~~~~~~~--~~~~Gl~~~~~v~p~T--~~e~l~~~~~~~~~~l~msv~~~~-g~~~-----~~~~~~~i~~lr~~~~~ 185 (244)
T PRK13125 116 DDLEKYVEI--IKNKGLKPVFFTSPKF--PDLLIHRLSKLSPLFIYYGLRPAT-GVPL-----PVSVERNIKRVRNLVGN 185 (244)
T ss_pred HHHHHHHHH--HHHcCCCEEEEECCCC--CHHHHHHHHHhCCCEEEEEeCCCC-CCCc-----hHHHHHHHHHHHHhcCC
Confidence 345566666 6666766666665555 4678999999999997 33444 3233 22233344444443 3
Q ss_pred CCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 180 KPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 180 kpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
+|+.+ .-..=|.. |+..++..|+|++...
T Consensus 186 ~~i~v---------~gGI~~~e---~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 186 KYLVV---------GFGLDSPE---DARDALSAGADGVVVG 214 (244)
T ss_pred CCEEE---------eCCcCCHH---HHHHHHHcCCCEEEEC
Confidence 67664 33333433 6677778899998874
No 193
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.96 E-value=18 Score=36.10 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=31.3
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCCh
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRFP 315 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~ 315 (398)
...++.+|+-|.+|.||..+|- ..|.++.+.+||-.
T Consensus 172 ~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~itPI~ 211 (295)
T PRK01231 172 SQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMF 211 (295)
T ss_pred EEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEEEecC
Confidence 4578999999999999999997 67889999999843
No 194
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.90 E-value=19 Score=35.69 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=30.3
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRF 314 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n 314 (398)
...++.+|+-|.||.||..+|- -.|.++.+.+||-
T Consensus 155 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI 193 (271)
T PRK01185 155 TFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYI 193 (271)
T ss_pred EEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEec
Confidence 4578999999999999999997 4578899999983
No 195
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=48.79 E-value=1.3e+02 Score=31.25 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHH--c
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNK--V 178 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~--~ 178 (398)
|||..+|+. .+.+||.| +|-+.++...+ +|||.|+--. |-.+ ...+-....+.+.... .
T Consensus 214 ~di~wlr~~-------~~~PiivK-----gV~~~~dA~~a~~~Gvd~I~VsnhG-Grql--d~~~~t~~~L~ei~~av~~ 278 (367)
T PLN02493 214 KDVQWLQTI-------TKLPILVK-----GVLTGEDARIAIQAGAAGIIVSNHG-ARQL--DYVPATISALEEVVKATQG 278 (367)
T ss_pred HHHHHHHhc-------cCCCEEee-----cCCCHHHHHHHHHcCCCEEEECCCC-CCCC--CCchhHHHHHHHHHHHhCC
Confidence 588888887 25778887 34445544433 8999997321 2111 1111112222222222 2
Q ss_pred CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 179 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 179 gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
..|||+.. ..= --+||+.|+.-|||+|++..
T Consensus 279 ~~~vi~dG---------GIr---~G~Dv~KALALGA~aV~iGr 309 (367)
T PLN02493 279 RIPVFLDG---------GVR---RGTDVFKALALGASGIFIGR 309 (367)
T ss_pred CCeEEEeC---------CcC---cHHHHHHHHHcCCCEEEEcH
Confidence 37787632 221 24799999999999999853
No 196
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=48.50 E-value=54 Score=32.30 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=30.9
Q ss_pred hhHHHHHHhCCcEEEecCccCCCCC------hHHHHHHHHHHHHHHHhh
Q psy259 204 SDVANAVLDGADCVMLSGETAKGDY------PVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 204 sDVanav~dG~D~vmLS~ETA~G~y------P~eaV~~m~~I~~~aE~~ 246 (398)
.|.......|+|++|+..+ |++ +-|++..|.+|+.+.=+.
T Consensus 33 ~ea~~l~~~GvDgiiveN~---~D~Py~~~~~~etvaaM~~i~~~v~~~ 78 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENM---GDVPYPKRVGPETVAAMARIAREVRRE 78 (254)
T ss_pred HHHHHHHHCCCCEEEEecC---CCCCccCCCCHHHHHHHHHHHHHHHHh
Confidence 5556667789999999865 444 459999999999977554
No 197
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=48.18 E-value=1.9e+02 Score=28.40 Aligned_cols=99 Identities=19% Similarity=0.085 Sum_probs=55.1
Q ss_pred HHHh-cHHHHHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHH--cC-CCEEEeehhhHHhhcCCCCCchhhhhH
Q psy259 133 QGVK-NLDEIIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNK--VG-KPVICATQMLESMIKKPRATRAEISDV 206 (398)
Q Consensus 133 ~~v~-n~deIl~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~--~g-kpvi~ATQmLeSMi~~~~PtraEvsDV 206 (398)
++++ +++-.++. +|||++. |= .-|.+.-.. .-++++++.+.+ .| .|||+ .-...+-.|+-+-
T Consensus 21 ~~~~~~i~~l~~~~Gv~gi~~~-Gs-tGE~~~Lt~-~Er~~~~~~~~~~~~~~~~via---------gv~~~~~~~ai~~ 88 (288)
T cd00954 21 DVLRAIVDYLIEKQGVDGLYVN-GS-TGEGFLLSV-EERKQIAEIVAEAAKGKVTLIA---------HVGSLNLKESQEL 88 (288)
T ss_pred HHHHHHHHHHHhcCCCCEEEEC-cC-CcCcccCCH-HHHHHHHHHHHHHhCCCCeEEe---------ccCCCCHHHHHHH
Confidence 3443 34666666 7999887 42 223332111 122333333332 23 57775 2223344455554
Q ss_pred H-HHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHH
Q psy259 207 A-NAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 207 a-nav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~a 243 (398)
+ -|...|+|++|+..---...-+-+-++....|+..+
T Consensus 89 a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 89 AKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4 567789999998655443333467788888888765
No 198
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.05 E-value=20 Score=35.98 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=37.4
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCChhhhhhccccccceEEecCCC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEP 335 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~ 335 (398)
+..++.+||-|.+|.||..+|- ..|.++.+.+||-.--. | ..-|++++..
T Consensus 176 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~vtPi~ph~----l--~~rplVlp~~ 229 (305)
T PRK02645 176 QYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMS----L--SSRPIVIPPG 229 (305)
T ss_pred EEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEEEecCccc----c--cCCCEEECCC
Confidence 4578999999999999999997 56899999999843211 2 2246666643
No 199
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=47.97 E-value=20 Score=38.69 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=30.9
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRF 314 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n 314 (398)
...++.+||-|.||.||..+|- ..|.++.|.+||=
T Consensus 377 ~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivlTPI 415 (508)
T PLN02935 377 CVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPI 415 (508)
T ss_pred EEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEEEec
Confidence 3578999999999999999997 5689999999983
No 200
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=47.96 E-value=2.9e+02 Score=27.33 Aligned_cols=174 Identities=19% Similarity=0.245 Sum_probs=88.4
Q ss_pred HHhcHHHHHHh-cCeeEEc-CCCCCC--CCChhhHHHHHHHHHHHH-HHcCCCEEEeehhhHHhhcCCCCCchhhhhHHH
Q psy259 134 GVKNLDEIIAE-ADGIMVA-RGDLGI--EIPPWKVFLAQKQMIAKC-NKVGKPVICATQMLESMIKKPRATRAEISDVAN 208 (398)
Q Consensus 134 ~v~n~deIl~~-sDgimva-RgDLg~--e~~~~~v~~~qk~ii~~c-~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVan 208 (398)
|+++.+..-+- .|||||- -||+-. +++++.+... ..|+... ++.+.|+++ |+|- +.+ -+.-++|.
T Consensus 30 A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m-~~i~~~v~~~~~~p~Gv--nvL~---nd~----~aal~iA~ 99 (257)
T TIGR00259 30 AWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAM-AVIAGQLKSDVSIPLGI--NVLR---NDA----VAALAIAM 99 (257)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHH-HHHHHHHHHhcCCCeee--eeec---CCC----HHHHHHHH
Confidence 34444433333 7999995 355544 5665555433 3444444 567889887 2222 111 12345666
Q ss_pred HHHhCCcEEEecCccCCCCC----------hHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHH
Q psy259 209 AVLDGADCVMLSGETAKGDY----------PVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAA 278 (398)
Q Consensus 209 av~dG~D~vmLS~ETA~G~y----------P~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A 278 (398)
| -|+|.|=. +.-.|.| .-|.+++-++|- .+-.+ |.+...+...+. ...++...+-.+.
T Consensus 100 a--~ga~FIRv--~~~~g~~~~d~G~~~~~a~e~~r~r~~l~--~~v~i-----~adV~~kh~~~l-~~~~~~e~a~~~~ 167 (257)
T TIGR00259 100 A--VGAKFIRV--NVLTGVYASDQGIIEGNAGELIRYKKLLG--SEVKI-----LADIVVKHAVHL-GNRDLESIALDTV 167 (257)
T ss_pred H--hCCCEEEE--ccEeeeEecccccccccHHHHHHHHHHcC--CCcEE-----EeceeecccCcC-CCCCHHHHHHHHH
Confidence 6 59998866 2223333 233444433332 11111 111111011111 0123444455555
Q ss_pred HhcCCcEEEEE-CCCchH--HHHHHhh---CCCCCEEEEeC--ChhhhhhccccccceE
Q psy259 279 SKVFAGAIVVL-TTTGTS--ARLISKY---RPRCPIISVTR--FPQVARQLHLHRSIIP 329 (398)
Q Consensus 279 ~~~~A~aIIv~-T~SG~t--A~~iSky---RP~~PIIAVT~--n~~taRqL~L~wGV~P 329 (398)
+...+++|||- +.||.+ -..+.++ .|..|++.-+- -+.+.+.+...+|+.-
T Consensus 168 ~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~adGviV 226 (257)
T TIGR00259 168 ERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSIADGVIV 226 (257)
T ss_pred HhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhhCCEEEE
Confidence 66668887653 357755 4668888 46789886553 3455666677888764
No 201
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=47.62 E-value=77 Score=26.69 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=47.3
Q ss_pred HHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
+..+|++ +.++|-++.|.+. ++..+++.+.-.|.|+++ +.+--..+++-+.|...|+||.+-.
T Consensus 17 a~km~~~--a~~~gi~~~i~a~-----~~~e~~~~~~~~Dvill~----------PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 17 ANALNKG--AKERGVPLEAAAG-----AYGSHYDMIPDYDLVILA----------PQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHH--HHHCCCcEEEEEe-----eHHHHHHhccCCCEEEEc----------ChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 4678888 8888877776654 344566666778999987 5566677788889999999998743
No 202
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=47.56 E-value=22 Score=34.77 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=31.3
Q ss_pred HhcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCCh
Q psy259 279 SKVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRFP 315 (398)
Q Consensus 279 ~~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~ 315 (398)
.+..++.+||-|.+|.||..+|- ..|.++.+.+|+-.
T Consensus 130 ~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~itPI~ 170 (246)
T PRK04761 130 EELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPIS 170 (246)
T ss_pred EEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEEEeec
Confidence 34578999999999999999997 56789999999843
No 203
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=47.53 E-value=28 Score=34.44 Aligned_cols=86 Identities=12% Similarity=0.235 Sum_probs=55.5
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHH-hcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIA-EADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~-~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
..+++. +.+-+.++.|.+ ++..---+|+++++. -.|-|+.+-+++ .....+.+.|+++++|+|.+.
T Consensus 87 e~~~~r--l~~INP~~~V~~-i~~~i~~e~~~~ll~~~~D~VIdaiD~~----------~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 87 EVMAER--IRQINPECRVTV-VDDFITPDNVAEYMSAGFSYVIDAIDSV----------RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred HHHHHH--HHhHCCCcEEEE-EecccChhhHHHHhcCCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEEC
Confidence 344444 544555665554 232212357778775 378887774432 234468889999999999762
Q ss_pred hhhHHhhcCCCCCchhhhhHHHHH
Q psy259 187 QMLESMIKKPRATRAEISDVANAV 210 (398)
Q Consensus 187 QmLeSMi~~~~PtraEvsDVanav 210 (398)
..-..-.||+-+++|+....
T Consensus 154 ----Gag~k~dp~~~~~~di~~t~ 173 (268)
T PRK15116 154 ----GAGGQIDPTQIQVVDLAKTI 173 (268)
T ss_pred ----CcccCCCCCeEEEEeeeccc
Confidence 23357789999999998763
No 204
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=47.50 E-value=1e+02 Score=29.48 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=85.6
Q ss_pred cCeeEEcCCCCCCC-CChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCcc
Q psy259 145 ADGIMVARGDLGIE-IPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGET 223 (398)
Q Consensus 145 sDgimvaRgDLg~e-~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ET 223 (398)
+|.+.|. ||.-. ...+.-....+++ ++..+.|+++ .-..-+.. |+..++.-|+|+|+++.+.
T Consensus 44 ~~~i~i~--dl~~~~~~~~~~~~~i~~i---~~~~~ipv~~---------~GGi~s~~---~~~~~l~~Ga~~Viigt~~ 106 (253)
T PRK02083 44 ADELVFL--DITASSEGRDTMLDVVERV---AEQVFIPLTV---------GGGIRSVE---DARRLLRAGADKVSINSAA 106 (253)
T ss_pred CCEEEEE--eCCcccccCcchHHHHHHH---HHhCCCCEEe---------eCCCCCHH---HHHHHHHcCCCEEEEChhH
Confidence 5777776 55432 1222222222333 3345789987 44455544 6677777899999997443
Q ss_pred CCCCChHHHHHHHHHHHHHH--HhhhhhhHHHH----H-HhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEEC--CCch
Q psy259 224 AKGDYPVECVRAMHNTCKEA--EAAIWHTKLLT----E-LKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLT--TTGT 294 (398)
Q Consensus 224 A~G~yP~eaV~~m~~I~~~a--E~~~~~~~~~~----~-~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T--~SG~ 294 (398)
- +.| ..+.++.+.. |+-...-..+. . ..-.........+.-....++.+.+.+++.|++.+ +.|.
T Consensus 107 l--~~p----~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~ 180 (253)
T PRK02083 107 V--ANP----ELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT 180 (253)
T ss_pred h--hCc----HHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCC
Confidence 2 335 3344444433 21111100000 0 00000000011111122334555677999988843 5552
Q ss_pred -------HHHHHHhhCCCCCEEEEeC--Ch-hhhhhccccccceEEecCCCCCCCcccCHHHHHHHHHHHHHHcCC
Q psy259 295 -------SARLISKYRPRCPIISVTR--FP-QVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKF 360 (398)
Q Consensus 295 -------tA~~iSkyRP~~PIIAVT~--n~-~taRqL~L~wGV~Pvl~~~~~~~~w~~d~d~~I~~ai~~ake~Gl 360 (398)
....+.+ ..+.||||--. +. ...+.+.. -|+..++........ .-+ +..+.+.+++.|+
T Consensus 181 ~~g~d~~~i~~~~~-~~~ipvia~GGv~s~~d~~~~~~~-~G~~gvivg~al~~~-~~~----~~~~~~~~~~~~~ 249 (253)
T PRK02083 181 KNGYDLELTRAVSD-AVNVPVIASGGAGNLEHFVEAFTE-GGADAALAASIFHFG-EIT----IGELKAYLAEQGI 249 (253)
T ss_pred CCCcCHHHHHHHHh-hCCCCEEEECCCCCHHHHHHHHHh-CCccEEeEhHHHHcC-CCC----HHHHHHHHHHCCC
Confidence 2233333 34689998763 33 33332222 466665553321000 022 3345566676665
No 205
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=47.19 E-value=1.4e+02 Score=28.65 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=44.1
Q ss_pred cccEEEeecC---hHHHhcHHHHHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCC
Q psy259 122 HIKIIAKIEN---HQGVKNLDEIIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKP 196 (398)
Q Consensus 122 ~~~iiaKIE~---~~~v~n~deIl~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~ 196 (398)
++.|..||=. .+.++ +-..++. +|+|-+.-+.-+..... ..|+..+ .+.|||. ...
T Consensus 139 ~~pVsvKir~g~~~~~~~-la~~l~~aG~d~ihv~~~~~g~~ad~--------~~I~~i~-~~ipVIg---------nGg 199 (233)
T cd02911 139 GVPVSVKIRAGVDVDDEE-LARLIEKAGADIIHVDAMDPGNHADL--------KKIRDIS-TELFIIG---------NNS 199 (233)
T ss_pred CCCEEEEEcCCcCcCHHH-HHHHHHHhCCCEEEECcCCCCCCCcH--------HHHHHhc-CCCEEEE---------ECC
Confidence 6889999932 11222 2223333 79887743333311111 2233333 5789885 344
Q ss_pred CCCchhhhhHHHHHHhCCcEEEec
Q psy259 197 RATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 197 ~PtraEvsDVanav~dG~D~vmLS 220 (398)
.-+. .|+...+..|+|+||+.
T Consensus 200 I~s~---eda~~~l~~GaD~VmiG 220 (233)
T cd02911 200 VTTI---ESAKEMFSYGADMVSVA 220 (233)
T ss_pred cCCH---HHHHHHHHcCCCEEEEc
Confidence 4443 57788888999999995
No 206
>PRK09224 threonine dehydratase; Reviewed
Probab=47.17 E-value=2.8e+02 Score=29.84 Aligned_cols=120 Identities=15% Similarity=0.120 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+.+- .|..+.-.-+...-..|++.+... + . .-++.+...+++++ +...+.
T Consensus 82 avA~aa~~lGi~~~Iv-----------mP~~tp~~K~~~~r~~GA~Vi~~g-~----~-~~~a~~~a~~l~~~-~g~~~v 143 (504)
T PRK09224 82 GVALSAARLGIKAVIV-----------MPVTTPDIKVDAVRAFGGEVVLHG-D----S-FDEAYAHAIELAEE-EGLTFI 143 (504)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC-C----C-HHHHHHHHHHHHHh-cCCEEe
Confidence 4566799999999873 233222333455667899977663 2 3 35777766666543 222111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCchHHHH----HHhhCCCCCEEEEeCChh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF--AGAIVVLTTTGTSARL----ISKYRPRCPIISVTRFPQ 316 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~--A~aIIv~T~SG~tA~~----iSkyRP~~PIIAVT~n~~ 316 (398)
.+ |++ ......-..-+.++..+++ .++|++..-+|.++.- +..++|...||+|-+...
T Consensus 144 ~~-f~~--------~~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~ 207 (504)
T PRK09224 144 HP-FDD--------PDVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDS 207 (504)
T ss_pred CC-CCC--------cHHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 11 111 1112222333466666663 6899999989977654 445789999999997543
No 207
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=47.17 E-value=1.6e+02 Score=27.41 Aligned_cols=81 Identities=23% Similarity=0.258 Sum_probs=45.9
Q ss_pred cccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCC-CCCChhhHHHHHHHHHHHHHH-cCCCEEEeehhhHHhhcCCCC
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLG-IEIPPWKVFLAQKQMIAKCNK-VGKPVICATQMLESMIKKPRA 198 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg-~e~~~~~v~~~qk~ii~~c~~-~gkpvi~ATQmLeSMi~~~~P 198 (398)
++.++.++.+.+ .+.++.+. +|+|.+....-+ ...+.. ..+...++++++ .++|++.+ ...-
T Consensus 102 ~i~~i~~v~~~~---~~~~~~~~gad~i~~~~~~~~G~~~~~~---~~~~~~i~~i~~~~~~Pvi~~---------GGI~ 166 (236)
T cd04730 102 GIKVIPTVTSVE---EARKAEAAGADALVAQGAEAGGHRGTFD---IGTFALVPEVRDAVDIPVIAA---------GGIA 166 (236)
T ss_pred CCEEEEeCCCHH---HHHHHHHcCCCEEEEeCcCCCCCCCccc---cCHHHHHHHHHHHhCCCEEEE---------CCCC
Confidence 577888887653 34444444 788876322111 111111 012334444443 37899974 2222
Q ss_pred CchhhhhHHHHHHhCCcEEEec
Q psy259 199 TRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 199 traEvsDVanav~dG~D~vmLS 220 (398)
+ ..|+..++..|+|+|+++
T Consensus 167 ~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 167 D---GRGIAAALALGADGVQMG 185 (236)
T ss_pred C---HHHHHHHHHcCCcEEEEc
Confidence 2 367888899999999995
No 208
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=46.83 E-value=1.8e+02 Score=28.48 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=57.2
Q ss_pred HHHhc-HHHHHHh-cCeeEEcCCCCC--CCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHH
Q psy259 133 QGVKN-LDEIIAE-ADGIMVARGDLG--IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVAN 208 (398)
Q Consensus 133 ~~v~n-~deIl~~-sDgimvaRgDLg--~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVan 208 (398)
+++++ ++-.++. .|||++. |--| ..+..++-..+.+..++.++ -..||++-+ ...+-.|+-+.+.
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv---------~~~s~~~~i~~a~ 87 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT---------GSNATEEAISLTK 87 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC---------CCccHHHHHHHHH
Confidence 34433 3444554 8999985 4332 33333443333444444432 236777632 2223334444443
Q ss_pred -HHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 209 -AVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 209 -av~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
|..-|+|++|+..=.-...-+-+.++....|+..++..
T Consensus 88 ~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~p 126 (285)
T TIGR00674 88 FAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLP 126 (285)
T ss_pred HHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCC
Confidence 55669999999865544333567778888888876543
No 209
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=46.46 E-value=2.5e+02 Score=26.16 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=30.0
Q ss_pred HHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHH
Q psy259 175 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVE 231 (398)
Q Consensus 175 c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~e 231 (398)
++....|++.+. ..-+. .|+..+...|+|++|+..---.|.++.+
T Consensus 186 ~~~~~ipvi~~G---------Gi~~~---~di~~~~~~Ga~gv~vg~~~~~~~~~~~ 230 (234)
T cd04732 186 AAATGIPVIASG---------GVSSL---DDIKALKELGVAGVIVGKALYEGKITLE 230 (234)
T ss_pred HHhcCCCEEEec---------CCCCH---HHHHHHHHCCCCEEEEeHHHHcCCCCHH
Confidence 445689999743 33333 4666677779999999766666665543
No 210
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.18 E-value=25 Score=35.28 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=30.5
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRF 314 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n 314 (398)
...++.+||-|.||.||..+|- -.|.++.+.+||-
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI 216 (296)
T PRK04539 178 TQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPI 216 (296)
T ss_pred EEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEec
Confidence 3468999999999999999997 5688999999983
No 211
>KOG3974|consensus
Probab=46.17 E-value=80 Score=31.64 Aligned_cols=56 Identities=11% Similarity=0.322 Sum_probs=43.0
Q ss_pred EEEeecC-hHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 125 IIAKIEN-HQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 125 iiaKIE~-~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
|+--+++ ..+++-++..+.-.++|.||+| ||-+ +-+....+.|++.|+..++|+.+
T Consensus 81 IVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGRd---p~~~k~i~~iley~~~~dvP~VI 137 (306)
T KOG3974|consen 81 IVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGRD---PAILKEIAKILEYLRGKDVPLVI 137 (306)
T ss_pred eecccccCCchHhHHHHHHhheeEEEECCC-CCCC---HHHHHHHHHHHHHHhcCCCcEEE
Confidence 3333333 3378888888888999999998 7763 55666667899999999999987
No 212
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=45.60 E-value=60 Score=26.66 Aligned_cols=57 Identities=25% Similarity=0.432 Sum_probs=40.2
Q ss_pred HhcHHHHHH--hcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCC-CCchhhhhHHHHHH
Q psy259 135 VKNLDEIIA--EADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPR-ATRAEISDVANAVL 211 (398)
Q Consensus 135 v~n~deIl~--~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~-PtraEvsDVanav~ 211 (398)
..+++++++ -.|.++|+=.+ .....++..|-++||+|+| ++|. .+..|...+..+..
T Consensus 51 ~~~~~~ll~~~~~D~V~I~tp~-----------~~h~~~~~~~l~~g~~v~~---------EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 51 YTDLEELLADEDVDAVIIATPP-----------SSHAEIAKKALEAGKHVLV---------EKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp ESSHHHHHHHTTESEEEEESSG-----------GGHHHHHHHHHHTTSEEEE---------ESSSSSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCCEEEEecCC-----------cchHHHHHHHHHcCCEEEE---------EcCCcCCHHHHHHHHHHHH
Confidence 456899998 48999998332 2345678889999999998 6665 45555555555443
No 213
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=45.51 E-value=1.5e+02 Score=28.15 Aligned_cols=143 Identities=20% Similarity=0.171 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHhhchhcCCcccEEEeecC-hH--------HHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHH
Q psy259 103 YESNVRLIEKLMATGEQGKHIKIIAKIEN-HQ--------GVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMI 172 (398)
Q Consensus 103 ~vddV~~ir~~~~l~~~~~~~~iiaKIE~-~~--------~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii 172 (398)
+++||+++|+. . +++||-=|-. .+ -++..++++++ +|-|=+.- ..=+-+ .--.+++
T Consensus 20 ~~~dI~aik~~--v-----~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa----T~R~Rp---~~l~~li 85 (192)
T PF04131_consen 20 GVEDIRAIKKA--V-----DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA----TDRPRP---ETLEELI 85 (192)
T ss_dssp SHHHHHHHHTT--B------S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-----SSSS-S---S-HHHHH
T ss_pred CHHHHHHHHHh--c-----CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec----CCCCCC---cCHHHHH
Confidence 35688888887 4 4555553321 11 24566777776 77776651 111112 3445677
Q ss_pred HHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEE--ecCccCCCCChHHHHHHHHHHHHHHHhhhhhh
Q psy259 173 AKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVM--LSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 250 (398)
Q Consensus 173 ~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vm--LS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 250 (398)
+.+++.+.++. | .-+-+.|.-+|...|+|+|= |||=|...+..---.+.+.+++.. . ..
T Consensus 86 ~~i~~~~~l~M-A-------------Dist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~--~-~p-- 146 (192)
T PF04131_consen 86 REIKEKYQLVM-A-------------DISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA--D-VP-- 146 (192)
T ss_dssp HHHHHCTSEEE-E-------------E-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT--T-SE--
T ss_pred HHHHHhCcEEe-e-------------ecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC--C-Cc--
Confidence 88888883333 2 12234567788899999874 677666555444456666666542 1 10
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEEC
Q psy259 251 KLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLT 290 (398)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T 290 (398)
+.-+ -.-.++.+ +..+++++|.+++|=|
T Consensus 147 -vIaE-----Gri~tpe~------a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 147 -VIAE-----GRIHTPEQ------AAKALELGAHAVVVGS 174 (192)
T ss_dssp -EEEE-----SS--SHHH------HHHHHHTT-SEEEE-H
T ss_pred -Eeec-----CCCCCHHH------HHHHHhcCCeEEEECc
Confidence 0000 00112222 3456888999999864
No 214
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=45.48 E-value=1.7e+02 Score=29.24 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChH-HHHHHHHHHHHHHH
Q psy259 166 LAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV-ECVRAMHNTCKEAE 244 (398)
Q Consensus 166 ~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~-eaV~~m~~I~~~aE 244 (398)
.+-..+...+++.+.||.+= |+ . - ....+|..|+..|++.||.-| ..+|. |-|+.-+++.+.|.
T Consensus 61 ~~~~~~~~~A~~~~vPV~lH---LD----H-~---~~~e~i~~Ai~~GftSVM~Dg----S~l~~eeNi~~T~~vve~Ah 125 (283)
T PRK07998 61 YIYEIVKRHADKMDVPVSLH---LD----H-G---KTFEDVKQAVRAGFTSVMIDG----AALPFEENIAFTKEAVDFAK 125 (283)
T ss_pred HHHHHHHHHHHHCCCCEEEE---Cc----C-C---CCHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHHHHH
Confidence 34556666777888898872 11 1 1 245688999999999999965 35788 67887777777776
Q ss_pred h
Q psy259 245 A 245 (398)
Q Consensus 245 ~ 245 (398)
.
T Consensus 126 ~ 126 (283)
T PRK07998 126 S 126 (283)
T ss_pred H
Confidence 5
No 215
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=45.46 E-value=62 Score=30.74 Aligned_cols=98 Identities=30% Similarity=0.324 Sum_probs=60.7
Q ss_pred HhcHHHHHHh-cCeeEEc--CCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhh------
Q psy259 135 VKNLDEIIAE-ADGIMVA--RGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISD------ 205 (398)
Q Consensus 135 v~n~deIl~~-sDgimva--RgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsD------ 205 (398)
+...++.++. +|+|-+- .|-++-+- ...+..--+++.+.|+..|.|+|+ + +.|+..|+.|
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIl---------E-~~l~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVIL---------E-PYLRGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEE---------E-ECECHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEE---------E-EecCchhhcccccHHH
Confidence 3445555555 6665432 11111111 356667777899999999999997 4 6677777321
Q ss_pred HHH----HHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHH
Q psy259 206 VAN----AVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 244 (398)
Q Consensus 206 Van----av~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE 244 (398)
|.+ |...|+|.|=.|-=.. ...-.+.++.|.+++..+.
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred HHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 222 3567999998864433 5566788999998887554
No 216
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=45.44 E-value=3.3e+02 Score=27.33 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=48.7
Q ss_pred cCCCEEEeehhhHHhhcCCCCC-----chhhhhHHHHHHhCCcEEEec-------CccCCCCChHHHHHHHHHHHHHHHh
Q psy259 178 VGKPVICATQMLESMIKKPRAT-----RAEISDVANAVLDGADCVMLS-------GETAKGDYPVECVRAMHNTCKEAEA 245 (398)
Q Consensus 178 ~gkpvi~ATQmLeSMi~~~~Pt-----raEvsDVanav~dG~D~vmLS-------~ETA~G~yP~eaV~~m~~I~~~aE~ 245 (398)
.++|+|+. +-.+ .+| -.|....+.-+.+++|++.|. + ...+.+|-...+.++.+.+....
T Consensus 127 ~~~plivs------i~g~-~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g-~~~~~~~~~~~~iv~av~~~~~~ 198 (327)
T cd04738 127 RGGPLGVN------IGKN-KDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPG-LRDLQGKEALRELLTAVKEERNK 198 (327)
T ss_pred CCCeEEEE------EeCC-CCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCc-cccccCHHHHHHHHHHHHHHHhh
Confidence 68999983 3222 222 233444445556679999982 2 22367776655555555443320
Q ss_pred hhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEECC
Q psy259 246 AIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTT 291 (398)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~ 291 (398)
.-....++-.+ .+. .+ .+.+ ...++++.+.++++|.+..+
T Consensus 199 ~~~~~Pv~vKl---~~~-~~-~~~~-~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 199 LGKKVPLLVKI---APD-LS-DEEL-EDIADVALEHGVDGIIATNT 238 (327)
T ss_pred cccCCCeEEEe---CCC-CC-HHHH-HHHHHHHHHcCCcEEEEECC
Confidence 00000111111 111 11 1222 23445567779999987764
No 217
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=45.36 E-value=30 Score=31.57 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=38.8
Q ss_pred CcEEEEECCCchHH-----HHHHhhCC-CCCEEEEeCChhhhhhccccccceEEecC
Q psy259 283 AGAIVVLTTTGTSA-----RLISKYRP-RCPIISVTRFPQVARQLHLHRSIIPLVYE 333 (398)
Q Consensus 283 A~aIIv~T~SG~tA-----~~iSkyRP-~~PIIAVT~n~~taRqL~L~wGV~Pvl~~ 333 (398)
...=|+||..|.|| +++...+. .-.|++||.|....+. ..-+|...+-..
T Consensus 66 ~gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~-~~~~GA~~iss~ 121 (166)
T PF05991_consen 66 GGIEVVFTKEGETADDYIERLVRELKNRPRQVTVVTSDREIQRA-ARGRGAKRISSE 121 (166)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHH-HhhCCCEEEcHH
Confidence 34559999999999 56667776 6899999998877666 479999886553
No 218
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.29 E-value=25 Score=34.31 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=29.3
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRF 314 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n 314 (398)
...++.+||-|.+|.||..+|- -.|.++.+.+|+-
T Consensus 143 ~~~~DG~ivsTptGSTaY~lSaGGpiv~p~~~~l~ItPI 181 (256)
T PRK14075 143 WFFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEITPI 181 (256)
T ss_pred EEecCEEEEeCCCchHHHHhhCCCceeCCCCCeEEeeee
Confidence 3568999999999999999997 4567888888773
No 219
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=45.16 E-value=1.8e+02 Score=25.21 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=47.9
Q ss_pred cccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCc
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATR 200 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptr 200 (398)
+..++.++......+... ..+. +|.+.+..+.-+-...... +.....+.......++|++.+.-+ -+
T Consensus 114 ~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pi~~~GGi---------~~- 181 (200)
T cd04722 114 DVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGGRDAV-PIADLLLILAKRGSKVPVIAGGGI---------ND- 181 (200)
T ss_pred CceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCCccCc-hhHHHHHHHHHhcCCCCEEEECCC---------CC-
Confidence 678888887654433211 2222 7999998765543222111 101111222234568999985332 11
Q ss_pred hhhhhHHHHHHhCCcEEEec
Q psy259 201 AEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 201 aEvsDVanav~dG~D~vmLS 220 (398)
..|+..++..|+|+++++
T Consensus 182 --~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 182 --PEDAAEALALGADGVIVG 199 (200)
T ss_pred --HHHHHHHHHhCCCEEEec
Confidence 246778888899999985
No 220
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=45.15 E-value=24 Score=35.18 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=30.9
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCCh
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRFP 315 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~ 315 (398)
...++.+||-|.+|.||..+|- ..|.++.+.+||-.
T Consensus 173 ~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~ltPI~ 212 (291)
T PRK02155 173 NQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIA 212 (291)
T ss_pred EEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEEEecC
Confidence 4578999999999999999997 56789999999843
No 221
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=44.89 E-value=2.6e+02 Score=30.18 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=69.8
Q ss_pred HHHHHHHHhhch----hcCCcccEEEeecC-hHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc-
Q psy259 106 NVRLIEKLMATG----EQGKHIKIIAKIEN-HQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV- 178 (398)
Q Consensus 106 dV~~ir~~~~l~----~~~~~~~iiaKIE~-~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~- 178 (398)
|+...+++..-. ....+..+=|-|=. .++.++.++++++ +|.|.|...+ ..-..|-.+++..++.
T Consensus 216 DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~--------g~~~~~~~~i~~ik~~~ 287 (505)
T PLN02274 216 DVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQ--------GDSIYQLEMIKYIKKTY 287 (505)
T ss_pred HHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCC--------CCcHHHHHHHHHHHHhC
Confidence 666666552100 11234555555654 5788999999998 9999987542 2223444566666764
Q ss_pred -CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC---------c-cCCCCChHHHHHHHHHHHH
Q psy259 179 -GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG---------E-TAKGDYPVECVRAMHNTCK 241 (398)
Q Consensus 179 -gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~---------E-TA~G~yP~eaV~~m~~I~~ 241 (398)
+.+++.. ...|.. |..+++..|+|+|..+. + |..|.-+..++..+.++++
T Consensus 288 p~~~vi~g----------~v~t~e---~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~ 348 (505)
T PLN02274 288 PELDVIGG----------NVVTMY---QAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAA 348 (505)
T ss_pred CCCcEEEe----------cCCCHH---HHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHH
Confidence 5666642 234443 56788889999998752 1 3455555566666666654
No 222
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=44.83 E-value=1.5e+02 Score=30.32 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=56.2
Q ss_pred ecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHH
Q psy259 129 IENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVAN 208 (398)
Q Consensus 129 IE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVan 208 (398)
-.++.--..+.+. =+-.||--....|--.|..+ |...+.+++. ...||++ ....=| -+||+.
T Consensus 205 ~~d~~~a~~l~~~--g~~avmPl~~pIGsg~gv~~-p~~i~~~~e~---~~vpViv---------dAGIg~---~sda~~ 266 (326)
T PRK11840 205 SDDPIAAKRLEDA--GAVAVMPLGAPIGSGLGIQN-PYTIRLIVEG---ATVPVLV---------DAGVGT---ASDAAV 266 (326)
T ss_pred CCCHHHHHHHHhc--CCEEEeeccccccCCCCCCC-HHHHHHHHHc---CCCcEEE---------eCCCCC---HHHHHH
Confidence 3444444444443 12445543344444444332 2333334333 5689988 333333 369999
Q ss_pred HHHhCCcEEEecCccCCCCChHHHHHHHHHHHH
Q psy259 209 AVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 241 (398)
Q Consensus 209 av~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~ 241 (398)
|+..|+|+|++..=-+..+.|+.=-+.|+.-++
T Consensus 267 AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 267 AMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 999999999998888999999875555544433
No 223
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=44.36 E-value=57 Score=26.84 Aligned_cols=42 Identities=26% Similarity=0.147 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCcEEEEECCC---------chHHHHHHhhCCCCCEEEE
Q psy259 270 VAIAAVEAASKVFAGAIVVLTTT---------GTSARLISKYRPRCPIISV 311 (398)
Q Consensus 270 ia~aav~~A~~~~A~aIIv~T~S---------G~tA~~iSkyRP~~PIIAV 311 (398)
++...++.+.+.+++.||+-+.. |+++..+.++-|+|||+.+
T Consensus 73 ~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 73 VAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 45566777888999999988762 6778888888899999875
No 224
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=44.35 E-value=26 Score=29.26 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=26.3
Q ss_pred CCcEEEEECCCchHHHHH-----HhhCCCCCEEEEeCChh
Q psy259 282 FAGAIVVLTTTGTSARLI-----SKYRPRCPIISVTRFPQ 316 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~i-----SkyRP~~PIIAVT~n~~ 316 (398)
.-+.+|++|.||.|...+ +|-| .+|||++|.++.
T Consensus 46 ~~d~~I~iS~sG~t~e~~~~~~~a~~~-g~~vi~iT~~~~ 84 (126)
T cd05008 46 EDTLVIAISQSGETADTLAALRLAKEK-GAKTVAITNVVG 84 (126)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHc-CCeEEEEECCCC
Confidence 456899999999987653 3444 599999999864
No 225
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=44.30 E-value=1.4e+02 Score=26.39 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEe
Q psy259 167 AQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 167 ~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmL 219 (398)
....+++.|+++|+++.+-|- + +.++...++..|+|+|+-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wtv------n-------~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWTV------N-------DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEcC------C-------CHHHHHHHHHCCCCEEec
Confidence 567899999999999999762 1 245668888999999974
No 226
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=44.30 E-value=2.1e+02 Score=26.63 Aligned_cols=80 Identities=26% Similarity=0.264 Sum_probs=42.2
Q ss_pred CcccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCCCCCC--ChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhc
Q psy259 121 KHIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDLGIEI--PPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIK 194 (398)
Q Consensus 121 ~~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDLg~e~--~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~ 194 (398)
..+.+++..-+ .+++..+ +|.|.+..+++.-.- ....-...-+++.+ ..++||+++-
T Consensus 118 ~~i~vi~~v~t------~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~---~~~iPvia~G-------- 180 (221)
T PRK01130 118 PGQLLMADCST------LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLK---AVGCPVIAEG-------- 180 (221)
T ss_pred CCCeEEEeCCC------HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHH---hCCCCEEEEC--------
Confidence 35677765443 3444333 688877544332110 01111112222222 2379999742
Q ss_pred CCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 195 KPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 195 ~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
..-|. .|+..+...|+|+|++.+
T Consensus 181 -GI~t~---~~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 181 -RINTP---EQAKKALELGAHAVVVGG 203 (221)
T ss_pred -CCCCH---HHHHHHHHCCCCEEEEch
Confidence 22222 577888889999999974
No 227
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=43.72 E-value=61 Score=31.38 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecC
Q psy259 267 AHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYE 333 (398)
Q Consensus 267 ~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~ 333 (398)
...||..|++.-.+ -+ .+|=.+|.|+..+++|-|..++-.+|++..+++.|.=.-++.-++..
T Consensus 80 K~~IA~~Aa~~I~~--g~--~Ifld~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~~~~~v~l~G 142 (251)
T PRK13509 80 KVRIAKAASQLCNP--GE--SVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIMG 142 (251)
T ss_pred HHHHHHHHHHhCCC--CC--EEEECCcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhCCCCEEEEEC
Confidence 45777777766543 33 33448999999999998878999999999999888766666555544
No 228
>KOG2618|consensus
Probab=43.66 E-value=24 Score=35.93 Aligned_cols=69 Identities=19% Similarity=0.375 Sum_probs=49.9
Q ss_pred hHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCCCCCCCcccCHHHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q psy259 294 TSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGW 373 (398)
Q Consensus 294 ~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~d~~I~~ai~~ake~Glik~GD~VVVvsG~ 373 (398)
.++...+.|+|..-||.. +-||..|+......+-....-...|....++...=++.+++|-.||++.|.
T Consensus 62 ~s~nhf~~~a~d~evi~p-----------MrWGLVPfwtK~d~~~~~f~tfNaRlE~lmEsksfrrpl~KgRCvVl~dGf 130 (366)
T KOG2618|consen 62 SSTNHFAVYAPDTEVIQP-----------MRWGLVPFWTKDDSQFKTFRTFNARLENLMESKSFRRPLEKGRCVVLMDGF 130 (366)
T ss_pred ecccccccccCCceEEee-----------eeeccccceecCCccccceeecccchHHHHhhhhhhccCCCCcEEEEecce
Confidence 445566788888776554 559999999876544444444556677777777778889999888888884
No 229
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.56 E-value=28 Score=34.47 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=29.8
Q ss_pred cCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCC
Q psy259 281 VFAGAIVVLTTTGTSARLISK----YRPRCPIISVTRF 314 (398)
Q Consensus 281 ~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n 314 (398)
..++.+||-|.+|.||..+|- -.|.++.+.+||-
T Consensus 154 ~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI 191 (272)
T PRK02231 154 QRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIALVPM 191 (272)
T ss_pred EecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEec
Confidence 478999999999999999997 5678889999983
No 230
>PRK06382 threonine dehydratase; Provisional
Probab=43.30 E-value=2.9e+02 Score=28.59 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhh
Q psy259 171 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 250 (398)
Q Consensus 171 ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 250 (398)
+...|+..|.|+.+- .|..+-...+...-..|++.+ +.++ ..-++.+...+++++- ..++..
T Consensus 88 ~A~aa~~~G~~~~iv-----------mp~~~~~~k~~~~~~~GA~Vv-~~~~-----~~~~a~~~a~~la~~~-~~~~v~ 149 (406)
T PRK06382 88 VAYAASINGIDAKIV-----------MPEYTIPQKVNAVEAYGAHVI-LTGR-----DYDEAHRYADKIAMDE-NRTFIE 149 (406)
T ss_pred HHHHHHHcCCCEEEE-----------EcCCCHHHHHHHHHHcCCEEE-EECC-----CHHHHHHHHHHHHHhc-CCEecC
Confidence 566889999999984 344443344555667899976 4443 2346666666655432 111111
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCChh
Q psy259 251 KLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLISK----YRPRCPIISVTRFPQ 316 (398)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n~~ 316 (398)
-|++ ....+.-...+.++..++ ..++||+..-+|.++.-+++ ..|.+.|++|-+...
T Consensus 150 -~~~~--------~~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~ 211 (406)
T PRK06382 150 -AFND--------RWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELS 211 (406)
T ss_pred -ccCC--------hHHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1111 112222333456666665 47999999999988766555 489999999998543
No 231
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=43.00 E-value=98 Score=26.87 Aligned_cols=56 Identities=25% Similarity=0.355 Sum_probs=41.5
Q ss_pred ChHHHhcHHHHHHh--cCeeEEc--CCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 131 NHQGVKNLDEIIAE--ADGIMVA--RGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 131 ~~~~v~n~deIl~~--sDgimva--RgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
+.++++++++.++. .|.|+|. -.|+.-..+.++...--+++++++++.+.++++.+
T Consensus 49 ~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 49 TAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVG 108 (177)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34567778776654 5766654 44776667788888888899999999999998753
No 232
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=42.97 E-value=3.4e+02 Score=26.70 Aligned_cols=123 Identities=17% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.++++. -|..+.. .....-.-..|++.++..++. | .++.+...+++.+.+....
T Consensus 72 alA~~a~~~G~~~~iv---------vp~~~~~-~~~~~~~~~~Ga~v~~v~~~~----~-~~~~~~~~~~~~~~~~~~~- 135 (311)
T TIGR01275 72 ATALAAKKLGLDAVLV---------LREKEEL-NGNLLLDKLMGAETRVYSAEE----Y-FEIMKYAEELAEELEKEGR- 135 (311)
T ss_pred HHHHHHHHhCCceEEE---------ecCCccC-CCCHHHHHHcCCEEEEECchh----h-hhhHHHHHHHHHHHHhcCC-
Confidence 3556899999999884 1211100 111122356899998886422 1 1222344444444332110
Q ss_pred hHHHHHHhhcCCCCCCh--HHHHHHHHHHHHHhc----CCcEEEEECCCchHHHHHHh----hCCCCCEEEEeC
Q psy259 250 TKLLTELKSMLPLPIDS--AHSVAIAAVEAASKV----FAGAIVVLTTTGTSARLISK----YRPRCPIISVTR 313 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~--~~~ia~aav~~A~~~----~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~ 313 (398)
..++. .....++ .+.....+.++..++ ..++||+..-||.|+--+++ ++|+++|++|-+
T Consensus 136 ~~~~~-----p~~~~~~~~~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~ 204 (311)
T TIGR01275 136 KPYVI-----PVGGSNSLGTLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAV 204 (311)
T ss_pred CeEEE-----CCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 00000 0000111 122222355666665 47899999999999865554 489999998863
No 233
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.83 E-value=1.2e+02 Score=31.54 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=48.6
Q ss_pred ccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCch
Q psy259 123 IKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRA 201 (398)
Q Consensus 123 ~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptra 201 (398)
+.+..++......+..+.++++ +|.|.|.-..-........= -...+++.+++.++|||. . ...|..
T Consensus 132 V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~--~~~~i~~~ik~~~ipVIa---------G-~V~t~e 199 (368)
T PRK08649 132 VIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG--EPLNLKEFIYELDVPVIV---------G-GCVTYT 199 (368)
T ss_pred EEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcC--CHHHHHHHHHHCCCCEEE---------e-CCCCHH
Confidence 4454566555677777777777 89999841100001100000 012355666677999985 1 244433
Q ss_pred hhhhHHHHHHhCCcEEEecC
Q psy259 202 EISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 202 EvsDVanav~dG~D~vmLS~ 221 (398)
|+-.++.-|+|+||...
T Consensus 200 ---~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 200 ---TALHLMRTGAAGVLVGI 216 (368)
T ss_pred ---HHHHHHHcCCCEEEECC
Confidence 55667778999999963
No 234
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=42.81 E-value=52 Score=35.18 Aligned_cols=64 Identities=22% Similarity=0.458 Sum_probs=55.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHH
Q psy259 157 IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAM 236 (398)
Q Consensus 157 ~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m 236 (398)
-++|.+....+-.++|..-++.|||+++ ..++..|...|.-..+.-...-.|.-.| |+.|.++-
T Consensus 158 ~dipRe~Y~eAEervI~ELk~igKPFvi-------llNs~~P~s~et~~L~~eL~ekY~vpVl---------pvnc~~l~ 221 (492)
T PF09547_consen 158 TDIPRENYVEAEERVIEELKEIGKPFVI-------LLNSTKPYSEETQELAEELEEKYDVPVL---------PVNCEQLR 221 (492)
T ss_pred cCCChHHHHHHHHHHHHHHHHhCCCEEE-------EEeCCCCCCHHHHHHHHHHHHHhCCcEE---------EeehHHcC
Confidence 3679999999999999999999999998 4677899999999999999988888777 67777653
No 235
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=42.74 E-value=2.6e+02 Score=25.36 Aligned_cols=92 Identities=11% Similarity=0.106 Sum_probs=52.1
Q ss_pred ecChHHHhcHHHHHHhcCeeEEcCCC---CCCCCChhhHHHHHHHHHHHHHHc--CCCEEEeehhhHHhhcCCCCCchhh
Q psy259 129 IENHQGVKNLDEIIAEADGIMVARGD---LGIEIPPWKVFLAQKQMIAKCNKV--GKPVICATQMLESMIKKPRATRAEI 203 (398)
Q Consensus 129 IE~~~~v~n~deIl~~sDgimvaRgD---Lg~e~~~~~v~~~qk~ii~~c~~~--gkpvi~ATQmLeSMi~~~~PtraEv 203 (398)
++.....+.+.++...+|.+.+..-+ =|-.++...+ ..-+++.+.+++. ++|+.++- .- + .
T Consensus 111 ~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~-~~i~~i~~~~~~~~~~~~i~v~G--------GI--~---~ 176 (210)
T TIGR01163 111 LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTL-EKIREVRKMIDENGLSILIEVDG--------GV--N---D 176 (210)
T ss_pred ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHH-HHHHHHHHHHHhcCCCceEEEEC--------Cc--C---H
Confidence 44444577788887778998875322 2222222222 2223344444443 35776531 11 2 1
Q ss_pred hhHHHHHHhCCcEEEecCccCCCCChHHHHH
Q psy259 204 SDVANAVLDGADCVMLSGETAKGDYPVECVR 234 (398)
Q Consensus 204 sDVanav~dG~D~vmLS~ETA~G~yP~eaV~ 234 (398)
.++..++.-|+|++.+++.--.-.-|.++++
T Consensus 177 env~~l~~~gad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 177 DNARELAEAGADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHH
Confidence 4578888899999999765543445666654
No 236
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=42.70 E-value=1.6e+02 Score=30.69 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhchhcCCcccEEE-eecChHHHhcHHHHHHh-cCeeEEcCCCCCCCC----C-hhhHHHHHHHHHHHHHH
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIA-KIENHQGVKNLDEIIAE-ADGIMVARGDLGIEI----P-PWKVFLAQKQMIAKCNK 177 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iia-KIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~----~-~~~v~~~qk~ii~~c~~ 177 (398)
|||..+|+. . +.+||. .|-+.+ .....++. +|+|.|+ |-=|-.+ + .+-++.+.+ +-.
T Consensus 235 ~di~~lr~~--~-----~~pvivKgV~s~~---dA~~a~~~Gvd~I~Vs-~hGGr~~d~~~~t~~~L~~i~~-----a~~ 298 (381)
T PRK11197 235 KDLEWIRDF--W-----DGPMVIKGILDPE---DARDAVRFGADGIVVS-NHGGRQLDGVLSSARALPAIAD-----AVK 298 (381)
T ss_pred HHHHHHHHh--C-----CCCEEEEecCCHH---HHHHHHhCCCCEEEEC-CCCCCCCCCcccHHHHHHHHHH-----Hhc
Confidence 588888887 4 344555 453332 23333344 8999987 2112221 1 122222221 112
Q ss_pred cCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 178 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 178 ~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
.+.|||... ..- --.||..|+..|||+||+..
T Consensus 299 ~~~~vi~dG---------GIr---~g~Di~KALaLGA~~V~iGr 330 (381)
T PRK11197 299 GDITILADS---------GIR---NGLDVVRMIALGADTVLLGR 330 (381)
T ss_pred CCCeEEeeC---------CcC---cHHHHHHHHHcCcCceeEhH
Confidence 357888742 222 24799999999999999953
No 237
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=42.64 E-value=1.8e+02 Score=27.92 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=90.6
Q ss_pred cCeeEEcCCCCCCCC-ChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCcc
Q psy259 145 ADGIMVARGDLGIEI-PPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGET 223 (398)
Q Consensus 145 sDgimvaRgDLg~e~-~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ET 223 (398)
+|.+.+. ||.-.- ....-...-+ +.+++.+.|+++ .-..-+.. |+-.+..-|+|.|+++.++
T Consensus 44 ~~~l~v~--Dl~~~~~~~~~n~~~i~---~i~~~~~~pv~~---------~GGi~s~~---d~~~~~~~Ga~~vivgt~~ 106 (254)
T TIGR00735 44 ADELVFL--DITASSEGRTTMIDVVE---RTAETVFIPLTV---------GGGIKSIE---DVDKLLRAGADKVSINTAA 106 (254)
T ss_pred CCEEEEE--cCCcccccChhhHHHHH---HHHHhcCCCEEE---------ECCCCCHH---HHHHHHHcCCCEEEEChhH
Confidence 6888877 554321 2222222222 334455789997 34444444 6677777799999997554
Q ss_pred CCCCChHHHHHHHHHHHHHH--HhhhhhhHHHHH-H------hhcCCCCCChHHHHHHHHHHHHHhcCCcEEEE--ECCC
Q psy259 224 AKGDYPVECVRAMHNTCKEA--EAAIWHTKLLTE-L------KSMLPLPIDSAHSVAIAAVEAASKVFAGAIVV--LTTT 292 (398)
Q Consensus 224 A~G~yP~eaV~~m~~I~~~a--E~~~~~~~~~~~-~------~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv--~T~S 292 (398)
- ..| ..+.++.+.. |+-......+.. + .-......+....-....++...+.+++.|++ .++.
T Consensus 107 ~--~~p----~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~ 180 (254)
T TIGR00735 107 V--KNP----ELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKD 180 (254)
T ss_pred h--hCh----HHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcc
Confidence 3 234 3444444433 221111000100 0 00000000101111123344556779999988 5554
Q ss_pred c-------hHHHHHHhhCCCCCEEEEe--CChhhhhhccccccceEEecCCCCCCCcccCHHHHHHHHHHHHHHcCC
Q psy259 293 G-------TSARLISKYRPRCPIISVT--RFPQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKF 360 (398)
Q Consensus 293 G-------~tA~~iSkyRP~~PIIAVT--~n~~taRqL~L~wGV~Pvl~~~~~~~~w~~d~d~~I~~ai~~ake~Gl 360 (398)
| ..+..+.+. .+.||++.- ++.+-+..+.-.-|+..+....... +.. --+..+.+.+++.|+
T Consensus 181 g~~~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~---~~~--~~~~~~~~~~~~~gi 251 (254)
T TIGR00735 181 GTKSGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFH---YRE--ITIGEVKEYLAERGI 251 (254)
T ss_pred cCCCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHh---CCC--CCHHHHHHHHHHCCC
Confidence 4 344555554 579999987 5555555543322255544322210 011 124456677777775
No 238
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=42.58 E-value=79 Score=29.90 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=45.8
Q ss_pred ChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHH-------------HHHHHHHHHHcCCCEEEeehhhHHhhcCCC
Q psy259 131 NHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLA-------------QKQMIAKCNKVGKPVICATQMLESMIKKPR 197 (398)
Q Consensus 131 ~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~-------------qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~ 197 (398)
++.+++-|..+.+.-+.+.||=| .=+..+.+..+ -+.+++.|+++|.|++
T Consensus 43 t~~a~~~I~~l~~~~p~~~vGAG---TV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~~~~~i~~i-------------- 105 (196)
T PF01081_consen 43 TPNALEAIEALRKEFPDLLVGAG---TVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYAREYGIPYI-------------- 105 (196)
T ss_dssp STTHHHHHHHHHHHHTTSEEEEE---S--SHHHHHHHHHHT-SEEEESS--HHHHHHHHHHTSEEE--------------
T ss_pred CccHHHHHHHHHHHCCCCeeEEE---eccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCccc--------------
Confidence 45566666666655555666644 12223333333 3478999999999998
Q ss_pred CCchhhhhHHHHHHhCCcEEEe
Q psy259 198 ATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 198 PtraEvsDVanav~dG~D~vmL 219 (398)
|--.=-|++..|...|+|.|=|
T Consensus 106 PG~~TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 106 PGVMTPTEIMQALEAGADIVKL 127 (196)
T ss_dssp EEESSHHHHHHHHHTT-SEEEE
T ss_pred CCcCCHHHHHHHHHCCCCEEEE
Confidence 3333346789999999999999
No 239
>PRK06801 hypothetical protein; Provisional
Probab=42.54 E-value=1.8e+02 Score=29.08 Aligned_cols=106 Identities=11% Similarity=0.147 Sum_probs=71.0
Q ss_pred CcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCC--C
Q psy259 121 KHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKP--R 197 (398)
Q Consensus 121 ~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~--~ 197 (398)
..+.|.-....-.-++.+++-++. .+.||+.-. .+|.++-...-+++.+.|+.+|.+|=..=..+-.--..+ .
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S----~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~ 148 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGS----TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYG 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccC
Confidence 368888888886656666666666 899999633 458888888889999999999998733211111100000 0
Q ss_pred C----CchhhhhHHHHH-HhCCcEEEecCccCCCCChH
Q psy259 198 A----TRAEISDVANAV-LDGADCVMLSGETAKGDYPV 230 (398)
Q Consensus 198 P----traEvsDVanav-~dG~D~vmLS~ETA~G~yP~ 230 (398)
+ ......++..++ .-|+|++-+|-=|+-|+|+-
T Consensus 149 ~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~ 186 (286)
T PRK06801 149 EADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKG 186 (286)
T ss_pred CcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCC
Confidence 0 011224456666 68999999999999999963
No 240
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=42.45 E-value=1.1e+02 Score=31.43 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=52.2
Q ss_pred HhcHHHHHHh-cCeeEEcCCCCCCCCChhhH-HHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchh--hhhHHHHH
Q psy259 135 VKNLDEIIAE-ADGIMVARGDLGIEIPPWKV-FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAE--ISDVANAV 210 (398)
Q Consensus 135 v~n~deIl~~-sDgimvaRgDLg~e~~~~~v-~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraE--vsDVanav 210 (398)
++.+...++. +|.|.+|=-+++.--..... ..--+++++.|+++||-+.++..++ +.+..-| ...+..++
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~------~~~~~~~~~~~~l~~l~ 89 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTL------LHNDELETLERYLDRLV 89 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccc------cccchhhHHHHHHHHHH
Confidence 4455555555 89999994456655444111 1114678899999999999875433 1222222 25677788
Q ss_pred HhCCcEEEecC
Q psy259 211 LDGADCVMLSG 221 (398)
Q Consensus 211 ~dG~D~vmLS~ 221 (398)
..|+|+|.++.
T Consensus 90 e~GvDaviv~D 100 (347)
T COG0826 90 ELGVDAVIVAD 100 (347)
T ss_pred HcCCCEEEEcC
Confidence 89999999973
No 241
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.28 E-value=80 Score=27.55 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=42.6
Q ss_pred HHHhcHHHHHHh-cCeeEEcCC--CCCCCCChhhHHHHHHHHHHHHHH--cCCCEEEee
Q psy259 133 QGVKNLDEIIAE-ADGIMVARG--DLGIEIPPWKVFLAQKQMIAKCNK--VGKPVICAT 186 (398)
Q Consensus 133 ~~v~n~deIl~~-sDgimvaRg--DLg~e~~~~~v~~~qk~ii~~c~~--~gkpvi~AT 186 (398)
+..+++++++.. .|-|++.=| |+.-..++++.....+.+++..++ .+.+|++.|
T Consensus 36 ~~~~~l~~~~~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~ 94 (169)
T cd01828 36 GLLARLDEDVALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQS 94 (169)
T ss_pred HHHHHHHHHhccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 345677777633 688888776 988778889999999999999998 788999854
No 242
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.25 E-value=1.8e+02 Score=28.76 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=53.4
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecCh----------HHHhcHHHHHHh-cCeeEEcCCCCCCCCCh----hhHHHHHHH
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENH----------QGVKNLDEIIAE-ADGIMVARGDLGIEIPP----WKVFLAQKQ 170 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~----------~~v~n~deIl~~-sDgimvaRgDLg~e~~~----~~v~~~qk~ 170 (398)
-|.++|+. + |.+..|..||.-. ++++-+..+.+. .|.|-|..|+..-.... ..-......
T Consensus 197 ii~avr~~--~---g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 197 IVAAVREA--V---GPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHH--c---CCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 45666665 4 5678888888632 222223333333 79999888765321110 000112222
Q ss_pred HHHHH-HHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHh-CCcEEEec
Q psy259 171 MIAKC-NKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLS 220 (398)
Q Consensus 171 ii~~c-~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~d-G~D~vmLS 220 (398)
.++.. +..+.|++....+- | ..|+..++.. |+|.|+++
T Consensus 272 ~~~~ir~~~~iPVi~~Ggi~---------t---~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 272 LAEKIKKAVKIPVIAVGGIR---------D---PEVAEEILAEGKADLVALG 311 (327)
T ss_pred HHHHHHHHCCCCEEEeCCCC---------C---HHHHHHHHHCCCCCeeeec
Confidence 33332 23478998753321 2 3356777887 79999995
No 243
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=42.19 E-value=2.7e+02 Score=27.74 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=53.9
Q ss_pred HHHhc-HHHHHHh-cCeeEEcCCCCC--CCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHH
Q psy259 133 QGVKN-LDEIIAE-ADGIMVARGDLG--IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVAN 208 (398)
Q Consensus 133 ~~v~n-~deIl~~-sDgimvaRgDLg--~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVan 208 (398)
++++. ++-.++. +|||++. |=-| ..+..++-..+.+...+.+ .-..|||+- -...+-.|+-+-+.
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~-GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~G---------v~~~~t~~ai~~a~ 97 (309)
T cd00952 29 DETARLVERLIAAGVDGILTM-GTFGECATLTWEEKQAFVATVVETV-AGRVPVFVG---------ATTLNTRDTIARTR 97 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-cccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEE---------eccCCHHHHHHHHH
Confidence 34433 3444555 8999986 3211 2222344333444444443 334777763 22222234444333
Q ss_pred -HHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHH
Q psy259 209 -AVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 244 (398)
Q Consensus 209 -av~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE 244 (398)
|-..|+|++|+..=--...-+-+.++.-+.|+..++
T Consensus 98 ~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 98 ALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred HHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 455599999998653222224577788888888763
No 244
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=42.09 E-value=65 Score=30.66 Aligned_cols=55 Identities=31% Similarity=0.359 Sum_probs=34.5
Q ss_pred HHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHH-cCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEE
Q psy259 140 EIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNK-VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCV 217 (398)
Q Consensus 140 eIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~-~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~v 217 (398)
.+.+. +|+|||| |-.|+ ..+++.. +++.+++ ..+||++ .|... +.+..++|++
T Consensus 19 ~v~~~gtDaI~VG-GS~gv--t~~~~~~----~v~~ik~~~~lPvil------------fp~~~------~~i~~~aD~~ 73 (205)
T TIGR01769 19 NAKDAGTDAIMVG-GSLGI--VESNLDQ----TVKKIKKITNLPVIL------------FPGNV------NGLSRYADAV 73 (205)
T ss_pred HHHhcCCCEEEEc-CcCCC--CHHHHHH----HHHHHHhhcCCCEEE------------ECCCc------cccCcCCCEE
Confidence 33344 7999999 54555 3455533 3444565 5799997 24432 4455899998
Q ss_pred Ee
Q psy259 218 ML 219 (398)
Q Consensus 218 mL 219 (398)
+.
T Consensus 74 ~~ 75 (205)
T TIGR01769 74 FF 75 (205)
T ss_pred EE
Confidence 76
No 245
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=41.82 E-value=66 Score=29.92 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=27.1
Q ss_pred hHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHH
Q psy259 205 DVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 242 (398)
Q Consensus 205 DVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~ 242 (398)
++..++..|+|.+.++.---...-|.++++.+.+.+++
T Consensus 177 ~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 177 KAADAIKAGADYVIVGRSIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred CHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence 46778888999988864322334599999988876543
No 246
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=41.72 E-value=71 Score=30.79 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecCC
Q psy259 266 SAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEE 334 (398)
Q Consensus 266 ~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~~ 334 (398)
...+||..|+++-.+ -+.| .+ .+|.|...+++|-|..++-+||++..++..|.-.-++.-++...
T Consensus 79 ~K~~IA~~Aa~lI~~--gd~I-fl-d~GtT~~~l~~~L~~~~ltVvTNs~~ia~~l~~~~~~~vil~GG 143 (240)
T PRK10411 79 HKADIAREALAWIEE--GMVI-AL-DASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSGG 143 (240)
T ss_pred HHHHHHHHHHHhCCC--CCEE-EE-cCcHHHHHHHHhhCCCCeEEEeCCHHHHHHHhcCCCCEEEEECC
Confidence 346788887776543 2333 33 79999999999998879999999999998887777776555543
No 247
>PRK15447 putative protease; Provisional
Probab=41.60 E-value=1.3e+02 Score=30.04 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=46.7
Q ss_pred cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 145 ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 145 sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
+|+|.++=..++.-.+. -..-.+++++.|+++||.|.++|.=+ .....|...+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 89999996555543322 12345678889999999999975321 012347788888888899988864
No 248
>PRK08328 hypothetical protein; Provisional
Probab=41.18 E-value=92 Score=29.73 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=40.4
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
+.+.+.++.|-+--+.. .-+|++++++-.|.|+-+-.++ .....+-+.|++.|+|+|.+
T Consensus 91 l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~~----------~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 91 LERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDNF----------ETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred HHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 45556777777644433 3367889998899888774332 23445667899999999974
No 249
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=41.16 E-value=32 Score=29.50 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=27.5
Q ss_pred hcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 136 KNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 136 ~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
++++++++.+|.++ |++ .|..-...++.|.++|+|+++.|
T Consensus 59 ~~l~~~~~~~DVvI----DfT-------~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 59 DDLEELLEEADVVI----DFT-------NPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp S-HHHHTTH-SEEE----EES--------HHHHHHHHHHHHHHT-EEEEE-
T ss_pred hhHHHhcccCCEEE----EcC-------ChHHhHHHHHHHHhCCCCEEEEC
Confidence 67888888899776 343 44556678899999999999976
No 250
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=41.08 E-value=2e+02 Score=28.42 Aligned_cols=93 Identities=22% Similarity=0.222 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEEc-CCCCCCCC--ChhhHHHHHHHHHHHHHHcC
Q psy259 104 ESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVA-RGDLGIEI--PPWKVFLAQKQMIAKCNKVG 179 (398)
Q Consensus 104 vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimva-RgDLg~e~--~~~~v~~~qk~ii~~c~~~g 179 (398)
.+.+.++|+. + +++|+.|.- ...+......+. +|+|.|. +| |... +...+ ..-.++.+.+. ..
T Consensus 161 ~~~i~~l~~~--~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g--G~~~~~g~~~~-~~l~~i~~~~~-~~ 227 (299)
T cd02809 161 WDDLAWLRSQ--W-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG--GRQLDGAPATI-DALPEIVAAVG-GR 227 (299)
T ss_pred HHHHHHHHHh--c-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC--CCCCCCCcCHH-HHHHHHHHHhc-CC
Confidence 3556666665 3 368888842 122233333334 8999884 22 2221 11111 11111211111 14
Q ss_pred CCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 180 KPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 180 kpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
.|||.+. ..-+ ..|+..++..|||+||+..
T Consensus 228 ipvia~G---------GI~~---~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 228 IEVLLDG---------GIRR---GTDVLKALALGADAVLIGR 257 (299)
T ss_pred CeEEEeC---------CCCC---HHHHHHHHHcCCCEEEEcH
Confidence 7888642 2222 3699999999999999964
No 251
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=40.63 E-value=56 Score=32.48 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=28.5
Q ss_pred hhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHH
Q psy259 204 SDVANAVLDGADCVMLSGETAKGDYPVECVRAMHN 238 (398)
Q Consensus 204 sDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~ 238 (398)
+|++.|+..|+|+|++..--+.-+.|++-.+-|..
T Consensus 202 sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~ 236 (267)
T CHL00162 202 SEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKL 236 (267)
T ss_pred HHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHH
Confidence 79999999999999998888899999554444433
No 252
>PRK07695 transcriptional regulator TenI; Provisional
Probab=40.35 E-value=3e+02 Score=25.31 Aligned_cols=112 Identities=10% Similarity=0.032 Sum_probs=61.6
Q ss_pred HHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
+.++|+. +. +..|-+.+.+.+- ..+..+. +|.|++++-.-...-+.... .--+.+-+.+...++||+.+
T Consensus 86 ~~~~r~~--~~----~~~ig~s~~s~e~---a~~a~~~Gadyi~~g~v~~t~~k~~~~~-~g~~~l~~~~~~~~ipvia~ 155 (201)
T PRK07695 86 VRSVREK--FP----YLHVGYSVHSLEE---AIQAEKNGADYVVYGHVFPTDCKKGVPA-RGLEELSDIARALSIPVIAI 155 (201)
T ss_pred HHHHHHh--CC----CCEEEEeCCCHHH---HHHHHHcCCCEEEECCCCCCCCCCCCCC-CCHHHHHHHHHhCCCCEEEE
Confidence 4556665 42 3445555544332 2222233 79998876433221110000 00112222234457999974
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHH
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCK 241 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~ 241 (398)
-- . +. .|+..+...|+|+|.+++.--....|.++++.+.++..
T Consensus 156 GG---------I-~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 156 GG---------I-TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred cC---------C-CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 22 2 22 45677778999999988776666789999988777653
No 253
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=40.15 E-value=40 Score=33.37 Aligned_cols=101 Identities=19% Similarity=0.316 Sum_probs=57.8
Q ss_pred CCCcccHHHHHHHHHHhhchhcCCcccEEEeecC--------------------hHHHhcHHHHHHhcCeeEEcCCCCCC
Q psy259 98 KEPNLYESNVRLIEKLMATGEQGKHIKIIAKIEN--------------------HQGVKNLDEIIAEADGIMVARGDLGI 157 (398)
Q Consensus 98 ~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~--------------------~~~v~n~deIl~~sDgimvaRgDLg~ 157 (398)
.++.++|+|+.++-++ +++.++++..-.-..+ ++.+.+..+..--.+-|+-.||-++.
T Consensus 108 gd~~~~V~d~~ea~~~--~~~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~ 185 (257)
T COG2099 108 GDNWIEVADIEEAAEA--AKQLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSE 185 (257)
T ss_pred CCceEEecCHHHHHHH--HhccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcCh
Confidence 4677778888888777 6655554443333332 44444444433335667778888876
Q ss_pred CCChhhHHHHHH-----------------HHHHHHHHcCCCEEEeehhhHHhhcCC---CCCchhhhhHHHHH
Q psy259 158 EIPPWKVFLAQK-----------------QMIAKCNKVGKPVICATQMLESMIKKP---RATRAEISDVANAV 210 (398)
Q Consensus 158 e~~~~~v~~~qk-----------------~ii~~c~~~gkpvi~ATQmLeSMi~~~---~PtraEvsDVanav 210 (398)
+... -+.-|- .=++.|++.|.||| |+..| .+-...++|+.+++
T Consensus 186 ~~n~--all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI--------~I~Rp~~~~~~~~~v~~~~~~l 248 (257)
T COG2099 186 EDNK--ALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVI--------MIERPIDYPAGFGDVTDLDAAL 248 (257)
T ss_pred HHHH--HHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEE--------EEecCCcCCcccchhhHHHHHH
Confidence 6443 222221 23577888888888 46666 22233445555554
No 254
>PRK14852 hypothetical protein; Provisional
Probab=40.09 E-value=78 Score=37.05 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=45.9
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeeh
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQ 187 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQ 187 (398)
..+++. +.+-|..+.|-+--|.. .-+|++++++-.|.|+=+-.++. ..+.+.+...|.+.|+|+|.++-
T Consensus 389 evaa~~--l~~INP~v~I~~~~~~I-~~en~~~fl~~~DiVVDa~D~~~--------~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 389 DVMTER--ALSVNPFLDIRSFPEGV-AAETIDAFLKDVDLLVDGIDFFA--------LDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred HHHHHH--HHHHCCCCeEEEEecCC-CHHHHHHHhhCCCEEEECCCCcc--------HHHHHHHHHHHHHcCCCEEEeec
Confidence 334444 55556666665543433 22789999999998885533221 13567888999999999998754
No 255
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=39.95 E-value=1.4e+02 Score=25.52 Aligned_cols=83 Identities=18% Similarity=0.342 Sum_probs=53.2
Q ss_pred HHHHHHHHhhchhcCCcccEEE----eecChHHHhc-HHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcC
Q psy259 106 NVRLIEKLMATGEQGKHIKIIA----KIENHQGVKN-LDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVG 179 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iia----KIE~~~~v~n-~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~g 179 (398)
|..++.+. +. |.+..+.+ +=++.+.+.+ +.+..+. +-|+.|..|+.--++| +.+++.|++++
T Consensus 32 e~~d~~~~--l~--~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP--------~~~i~~A~~~~ 99 (123)
T PF07905_consen 32 EAPDPSDW--LR--GGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIP--------EEIIELADELG 99 (123)
T ss_pred ecCCHHHh--CC--CCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCC--------HHHHHHHHHcC
Confidence 44445555 42 44454443 2223443333 3444444 8899999886655777 45789999999
Q ss_pred CCEEEeehhhHHhhcCCCCCchhhhhHHHHHHh
Q psy259 180 KPVICATQMLESMIKKPRATRAEISDVANAVLD 212 (398)
Q Consensus 180 kpvi~ATQmLeSMi~~~~PtraEvsDVanav~d 212 (398)
-|+|. .|...-.+||.+.|.+
T Consensus 100 lPli~------------ip~~~~f~~I~~~v~~ 120 (123)
T PF07905_consen 100 LPLIE------------IPWEVPFSDITREVMR 120 (123)
T ss_pred CCEEE------------eCCCCCHHHHHHHHHH
Confidence 99997 5666667788877754
No 256
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=39.43 E-value=2.6e+02 Score=28.59 Aligned_cols=114 Identities=16% Similarity=0.239 Sum_probs=73.8
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEE---
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVI--- 183 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi--- 183 (398)
..++.+ ..+.+-.+.|.-.+..-.-++.+.+-++. -+.||+.-. .+|.++=...-+++++.|+..|..|=
T Consensus 73 ~~~~~~--a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S----~lp~eeNI~~T~evv~~Ah~~GvsVEaEl 146 (321)
T PRK07084 73 QGAVEY--AKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGS----HLPYEENVALTKKVVEYAHQFDVTVEGEL 146 (321)
T ss_pred HHHHHH--HHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 444554 33334468888899887655555555555 789999954 56888888999999999999888762
Q ss_pred ---EeehhhHHhhcCCCCCchhhhhHHHHHH-hCCcEEEecCccCCCCChH
Q psy259 184 ---CATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPV 230 (398)
Q Consensus 184 ---~ATQmLeSMi~~~~PtraEvsDVanav~-dG~D~vmLS~ETA~G~yP~ 230 (398)
-... +..... .-......+....+. -|+|++-.|--|+-|.|+-
T Consensus 147 G~igg~e--d~~~~~-~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~ 194 (321)
T PRK07084 147 GVLAGVE--DEVSAE-HHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKF 194 (321)
T ss_pred eeecCcc--CCccCc-ccccCCHHHHHHHHHHhCCCEEeeccccccccccC
Confidence 1111 000000 000112234455564 4999999999999999963
No 257
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.33 E-value=1.6e+02 Score=29.51 Aligned_cols=104 Identities=14% Similarity=0.241 Sum_probs=66.2
Q ss_pred CcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCE-EEeehhh---HHhhcC
Q psy259 121 KHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPV-ICATQML---ESMIKK 195 (398)
Q Consensus 121 ~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpv-i~ATQmL---eSMi~~ 195 (398)
.++.|.-.+..-.-++.+.+=++. .+.||+. |-.+|.|+=...-|++.+.|+.+|.+| .=-.++- +....+
T Consensus 73 ~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~ 148 (283)
T PRK07998 73 MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMID----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSE 148 (283)
T ss_pred CCCCEEEECcCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccc
Confidence 367788888776544444444444 7999996 346788877788999999999999998 1100000 000000
Q ss_pred CCCCchhhhhHHHHHH-hCCcEEEecCccCCCCCh
Q psy259 196 PRATRAEISDVANAVL-DGADCVMLSGETAKGDYP 229 (398)
Q Consensus 196 ~~PtraEvsDVanav~-dG~D~vmLS~ETA~G~yP 229 (398)
.-...+..|+...+. -|+|++-.|=-|+-|.|+
T Consensus 149 -~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~ 182 (283)
T PRK07998 149 -ADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLED 182 (283)
T ss_pred -ccccCCHHHHHHHHHHhCcCeeehhccccccCCC
Confidence 000112234455553 599999999999999994
No 258
>PRK15452 putative protease; Provisional
Probab=39.23 E-value=2.5e+02 Score=29.79 Aligned_cols=120 Identities=12% Similarity=0.107 Sum_probs=69.3
Q ss_pred hHHHHHHhCCcEEEecCccC-----CCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHH
Q psy259 205 DVANAVLDGADCVMLSGETA-----KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAAS 279 (398)
Q Consensus 205 DVanav~dG~D~vmLS~ETA-----~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~ 279 (398)
-+..|+..|||+|.+.++.- .+.|..+-++-.-+.|++.-..++.. .+ ..+.+..-.-...-+....
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt--~n------~i~~e~el~~~~~~l~~l~ 86 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVV--VN------IAPHNAKLKTFIRDLEPVI 86 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEE--ec------CcCCHHHHHHHHHHHHHHH
Confidence 44678999999999977632 24566665444444444433322211 00 0111111111222345556
Q ss_pred hcCCcEEEEECCCchHHHHHHhhCCCCCEEEEe----CChhhhhhccccccceEEecCCC
Q psy259 280 KVFAGAIVVLTTTGTSARLISKYRPRCPIISVT----RFPQVARQLHLHRSIIPLVYEEP 335 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT----~n~~taRqL~L~wGV~Pvl~~~~ 335 (398)
+.++++|||- +-...+++.++.|..||.+=| .|...++.+.= .|+.-+....+
T Consensus 87 ~~gvDgvIV~--d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~-lG~~rvvLSrE 143 (443)
T PRK15452 87 AMKPDALIMS--DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQ-MGLTRVILSRE 143 (443)
T ss_pred hCCCCEEEEc--CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHH-CCCcEEEECCc
Confidence 7789998874 345567777888999998766 56777776653 47766555443
No 259
>PRK15456 universal stress protein UspG; Provisional
Probab=39.03 E-value=70 Score=27.21 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCcEEEEECCC--------chHHHHHHhhCCCCCEEEE
Q psy259 273 AAVEAASKVFAGAIVVLTTT--------GTSARLISKYRPRCPIISV 311 (398)
Q Consensus 273 aav~~A~~~~A~aIIv~T~S--------G~tA~~iSkyRP~~PIIAV 311 (398)
..++.|.+.+++.||+-|+. |+++..+.+.- +||++.|
T Consensus 96 ~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a-~~pVLvV 141 (142)
T PRK15456 96 EVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHA-NLPVLVV 141 (142)
T ss_pred HHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcC-CCCEEEe
Confidence 34567788999999988763 55666676664 5999876
No 260
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.89 E-value=36 Score=34.04 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=29.3
Q ss_pred cCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeC
Q psy259 281 VFAGAIVVLTTTGTSARLISK----YRPRCPIISVTR 313 (398)
Q Consensus 281 ~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~ 313 (398)
..++.+|+-|.+|.||..+|- -.|.++.+.+||
T Consensus 174 ~~~DGlIvsTptGSTAYslSAGGPii~P~~~~~~itP 210 (292)
T PRK03378 174 QRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVP 210 (292)
T ss_pred EEccEEEEeCCCchHHhHhhcCCceeCCCCCeEEEEe
Confidence 468999999999999999996 567899999988
No 261
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=38.76 E-value=2.1e+02 Score=28.53 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=22.8
Q ss_pred HHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHH-HhCCcEEEec
Q psy259 175 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAV-LDGADCVMLS 220 (398)
Q Consensus 175 c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav-~dG~D~vmLS 220 (398)
....+.|||. ....-|. .|+..++ ..|+|+||+.
T Consensus 188 ~~~~~ipvi~---------nGgI~~~---~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 188 KQAVRIPVIG---------NGDIFSP---EDAKAMLETTGCDGVMIG 222 (319)
T ss_pred HHcCCCcEEE---------eCCCCCH---HHHHHHHHhhCCCEEEEC
Confidence 3346799986 3334443 4667777 5789999994
No 262
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=38.71 E-value=92 Score=31.91 Aligned_cols=65 Identities=14% Similarity=0.291 Sum_probs=42.7
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..+++. +.+.+..+.|.+.-+..+. +|++++++-.|.|+-+-.++ ..+..+-+.|.+.++|++.+
T Consensus 192 ~~~~~~--l~~~np~v~v~~~~~~~~~-~~~~~~~~~~D~Vv~~~d~~----------~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 192 DSAAQR--LAALNPDVQVEAVQERVTS-DNVEALLQDVDVVVDGADNF----------PTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred HHHHHH--HHHHCCCCEEEEEeccCCh-HHHHHHHhCCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 334444 5555566666554333222 57888998899888774332 24556888899999999986
No 263
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=38.50 E-value=2e+02 Score=27.96 Aligned_cols=99 Identities=24% Similarity=0.359 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 105 ddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
|+..++.+. ..+. .+..++-.=..++++-+++. -.+.+=||-+||. .. .++++|.+.|||+|+
T Consensus 56 e~~~~L~~~--~~~~--gi~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~------n~-----~lL~~~A~tgkPvIl 118 (241)
T PF03102_consen 56 EQHKELFEY--CKEL--GIDFFSTPFDEESVDFLEEL--GVPAYKIASGDLT------NL-----PLLEYIAKTGKPVIL 118 (241)
T ss_dssp HHHHHHHHH--HHHT--T-EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-------H-----HHHHHHHTT-S-EEE
T ss_pred HHHHHHHHH--HHHc--CCEEEECCCCHHHHHHHHHc--CCCEEEecccccc------CH-----HHHHHHHHhCCcEEE
Confidence 366777777 5543 57778877677776666443 2899999999985 22 367788889999999
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHH-HhCCcEEEecCccCCCCChHH
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAV-LDGADCVMLSGETAKGDYPVE 231 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav-~dG~D~vmLS~ETA~G~yP~e 231 (398)
+|-| -|-+|+.+..+.+ ..|.+=+.|= =-.-.||..
T Consensus 119 STG~---------stl~EI~~Av~~~~~~~~~~l~ll--HC~s~YP~~ 155 (241)
T PF03102_consen 119 STGM---------STLEEIERAVEVLREAGNEDLVLL--HCVSSYPTP 155 (241)
T ss_dssp E-TT-----------HHHHHHHHHHHHHHCT--EEEE--EE-SSSS--
T ss_pred ECCC---------CCHHHHHHHHHHHHhcCCCCEEEE--ecCCCCCCC
Confidence 7764 6778998888888 5555544441 134468843
No 264
>PRK07476 eutB threonine dehydratase; Provisional
Probab=38.48 E-value=4.1e+02 Score=26.43 Aligned_cols=119 Identities=12% Similarity=0.104 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
.+...|++.|.|+++- .|..+.-.-+...-..|++.+... + ..-++++...+++++- ...|.
T Consensus 81 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~V~~~~-~-----~~~~~~~~a~~~~~~~-g~~~~ 142 (322)
T PRK07476 81 ALAYAARALGIRATIC-----------MSRLVPANKVDAIRALGAEVRIVG-R-----SQDDAQAEVERLVREE-GLTMV 142 (322)
T ss_pred HHHHHHHHhCCCEEEE-----------eCCCCCHHHHHHHHHcCCEEEEEC-C-----CHHHHHHHHHHHHHhc-CCEEe
Confidence 4566899999999883 343333344566777899976653 2 2346766666654431 11111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHH----hhCCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLIS----KYRPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iS----kyRP~~PIIAVT~n~ 315 (398)
.+ |. . + ...+.....+.|+..+. +.++||+.+-+|.++.-++ .+.|.+.|++|-+..
T Consensus 143 ~~-~~-----n--~-~~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~ 204 (322)
T PRK07476 143 PP-FD-----D--P-RIIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMER 204 (322)
T ss_pred CC-CC-----C--c-ceeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 11 0 1 11122234456666665 4688999999998875444 467999999998753
No 265
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.40 E-value=1.4e+02 Score=28.77 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=47.6
Q ss_pred cChHHHhcHHHHHHh----cCeeEEcCCCCCCCCChhhHHH-------------HHHHHHHHHHHcCCCEEEeehhhHHh
Q psy259 130 ENHQGVKNLDEIIAE----ADGIMVARGDLGIEIPPWKVFL-------------AQKQMIAKCNKVGKPVICATQMLESM 192 (398)
Q Consensus 130 E~~~~v~n~deIl~~----sDgimvaRgDLg~e~~~~~v~~-------------~qk~ii~~c~~~gkpvi~ATQmLeSM 192 (398)
-++.+++.|+++.+. -+.++||=| .=+..+.+.. .-..+++.|+++|.|++
T Consensus 49 ~tp~a~~~i~~l~~~~~~~~p~~~vGaG---TVl~~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~i--------- 116 (222)
T PRK07114 49 RGDFAHEVFAELVKYAAKELPGMILGVG---SIVDAATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYS--------- 116 (222)
T ss_pred CCCcHHHHHHHHHHHHHhhCCCeEEeeE---eCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEe---------
Confidence 455566666666532 234666644 1122233322 23478999999999998
Q ss_pred hcCCCCCchhhhhHHHHHHhCCcEEEe
Q psy259 193 IKKPRATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 193 i~~~~PtraEvsDVanav~dG~D~vmL 219 (398)
|--.=.|++..|...|+|.|=|
T Consensus 117 -----PG~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 117 -----PGCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred -----CCCCCHHHHHHHHHCCCCEEEE
Confidence 4444457889999999999998
No 266
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=38.24 E-value=1.3e+02 Score=31.15 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=102.4
Q ss_pred hhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCC
Q psy259 117 GEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKP 196 (398)
Q Consensus 117 ~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~ 196 (398)
...|+.+.....|.+.+-++..-+.....|-++|--.|.. -||.|.+ |+.....+.-++..
T Consensus 69 ~~~g~~~~~~v~i~~~~~~~~a~~~~~~~~~~iv~~~Dw~-iIPlEnl-------iA~~~~~~~~i~a~----------- 129 (354)
T PF01959_consen 69 KAEGKEVGVYVEITDKEDEEEACELAKRADYVIVEFRDWT-IIPLENL-------IAALQGSSTKIIAV----------- 129 (354)
T ss_pred hccCceEEEEEEECCHHHHHHHHHHhccCCeEEEEcCCCc-EecHHHH-------HHHhcCCCceEEEE-----------
Confidence 3457788899999999999999988888888888755654 4788885 44443344444431
Q ss_pred CCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhh-hhhh----------HHHHHHhhcCCCCCC
Q psy259 197 RATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA-IWHT----------KLLTELKSMLPLPID 265 (398)
Q Consensus 197 ~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~-~~~~----------~~~~~~~~~~~~~~~ 265 (398)
.-+-.|+-=...+..-|+|+|+|..+. | ..++-+.+.+.+.+.. +.-. .+-++-.-.+-....
T Consensus 130 v~~~~eA~~~~~~LE~G~dGVll~~~d-----~-~ei~~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~ 203 (354)
T PF01959_consen 130 VADAEEARVALEVLEKGVDGVLLDPDD-----P-AEIKALVALLKERSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLR 203 (354)
T ss_pred eCCHHHHHHHHHHHhcCCCeEEECCCC-----H-HHHHHHHHHHhhccCCcceeEEEEEEEEEEcCCccEEEEEccccCC
Confidence 344555555688899999999998763 2 4455555555552221 1000 000000000000000
Q ss_pred hHHHH-----------HHH-------HHHHHHhcCCcEEEEECCC-chHHHHHHhhCCCCCEEEEeCChhh
Q psy259 266 SAHSV-----------AIA-------AVEAASKVFAGAIVVLTTT-GTSARLISKYRPRCPIISVTRFPQV 317 (398)
Q Consensus 266 ~~~~i-----------a~a-------av~~A~~~~A~aIIv~T~S-G~tA~~iSkyRP~~PIIAVT~n~~t 317 (398)
+.|.+ ..+ ...--|..||.++=.++.. |...++||-.+..-.|++|-.+-++
T Consensus 204 ~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~t 274 (354)
T PF01959_consen 204 PGEGMLVGSSSSGLFLVHSETHESPYVASRPFRVNAGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRT 274 (354)
T ss_pred CCCeEEEcccCceEEEEEeccccCCCCCCCCceEecCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCE
Confidence 00000 000 0112256678777666655 6666778999999999999877554
No 267
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=38.11 E-value=1.9e+02 Score=28.21 Aligned_cols=114 Identities=24% Similarity=0.276 Sum_probs=67.3
Q ss_pred HHHHHHHHhhchhcCCcccEEE--eecChHHHhcHHHHHHh-----cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc
Q psy259 106 NVRLIEKLMATGEQGKHIKIIA--KIENHQGVKNLDEIIAE-----ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV 178 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iia--KIE~~~~v~n~deIl~~-----sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~ 178 (398)
++.++.++ ..+.| .|+| --|+--..+++.+++.. +|-+=|| .+.-..+++...-+.....-+ .
T Consensus 106 ~~~~~~~~--~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiA----vm~~~~~DvL~ll~~~~~~~~-~ 175 (231)
T COG0710 106 DVKEIIKF--AKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIA----VMPQSKEDVLDLLEATREFKE-A 175 (231)
T ss_pred hHHHHHhc--cccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEE----ecCCCHHHHHHHHHHHHhccc-c
Confidence 56677766 44333 4444 22332333344444443 3666555 222233555544443332222 8
Q ss_pred CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEE--ecCccCCCCChHHHHHHHHHHH
Q psy259 179 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVM--LSGETAKGDYPVECVRAMHNTC 240 (398)
Q Consensus 179 gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vm--LS~ETA~G~yP~eaV~~m~~I~ 240 (398)
+||+++ =||=+..++||. ++.++ |..... +-.-||=|..+++.++.+-.+.
T Consensus 176 ~~p~i~-----i~MG~~G~~SRv-----~~~~~-GS~~tya~~~~~sAPGQi~v~~l~~~~~~l 228 (231)
T COG0710 176 EKPVIT-----ISMGKTGKISRV-----AGPVF-GSPITYASLDKPSAPGQISVDELRKILTLL 228 (231)
T ss_pred CCCEEE-----EecCCCCchhhh-----hHhhh-CCceeEeecCCCCCCCCCCHHHHHHHHHHh
Confidence 999997 389999999997 77764 555544 4567899999998887766543
No 268
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=38.05 E-value=2.2e+02 Score=27.51 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHH-HhCCcEEEecCccCCCCChHHHHHHHHHH
Q psy259 161 PWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAV-LDGADCVMLSGETAKGDYPVECVRAMHNT 239 (398)
Q Consensus 161 ~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav-~dG~D~vmLS~ETA~G~yP~eaV~~m~~I 239 (398)
.+......+.+++.|++.|..|.+.. ...++-+..++.+++..+ ..|+|.+.|. +|.=..+|.+.-+....+
T Consensus 105 ~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 105 RAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA-DTVGILDPFTTYELIRRL 177 (259)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCCCCCCHHHHHHHHHHH
Confidence 35555667789999999999876532 234455666777777665 4599999996 788888998877777766
Q ss_pred HHH
Q psy259 240 CKE 242 (398)
Q Consensus 240 ~~~ 242 (398)
.+.
T Consensus 178 ~~~ 180 (259)
T cd07939 178 RAA 180 (259)
T ss_pred HHh
Confidence 653
No 269
>PRK08639 threonine dehydratase; Validated
Probab=37.87 E-value=3.5e+02 Score=28.20 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEE--EecCccCCCCChHHHHHHHHHHHHHHHhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCV--MLSGETAKGDYPVECVRAMHNTCKEAEAAI 247 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~v--mLS~ETA~G~yP~eaV~~m~~I~~~aE~~~ 247 (398)
-+...|+..|.|+.+- .|..+--.-+...-..||+.+ .+. |...-++++.-.+++++ +..+
T Consensus 87 alA~~a~~~G~~~~Iv-----------mP~~~~~~k~~~~r~~GA~vv~v~~~-----g~~~~~a~~~a~~~a~~-~g~~ 149 (420)
T PRK08639 87 GVAYACRHLGIPGVIF-----------MPVTTPQQKIDQVRFFGGEFVEIVLV-----GDTFDDSAAAAQEYAEE-TGAT 149 (420)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCChHHHHHHHHHcCCCeeEEEEe-----CcCHHHHHHHHHHHHHh-cCCc
Confidence 4566899999999984 344433334566667899853 343 33445666655555433 1111
Q ss_pred hhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC----CcEEEEECCCchHHHHHH----hhCCCCCEEEEeCCh
Q psy259 248 WHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF----AGAIVVLTTTGTSARLIS----KYRPRCPIISVTRFP 315 (398)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~----A~aIIv~T~SG~tA~~iS----kyRP~~PIIAVT~n~ 315 (398)
+..+ |++. +....-..-+.++..+++ .++||+..-+|.++.-++ ..+|.+.||+|-+..
T Consensus 150 ~~~~-~~~~--------~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~ 216 (420)
T PRK08639 150 FIPP-FDDP--------DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAG 216 (420)
T ss_pred ccCC-CCCh--------hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1111 2110 111111222556666653 689999999998765544 457999999998754
No 270
>PRK06835 DNA replication protein DnaC; Validated
Probab=37.62 E-value=1e+02 Score=31.37 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=48.2
Q ss_pred HHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecC
Q psy259 142 IAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 142 l~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ 221 (398)
+.-+|-++|. |||.+...+.....--.|+......+||+|++|+.=-+-...... ..+..=+..|...+-+.|
T Consensus 244 l~~~DLLIID--DlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~-----eri~SRL~~~~~~i~~~G 316 (329)
T PRK06835 244 LINCDLLIID--DLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS-----ERISSRLLGNFTLLKFYG 316 (329)
T ss_pred hccCCEEEEe--ccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh-----HHHHHHHHcCCEEEEecC
Confidence 3457999997 999997665544444578888888899999998862211111111 124555666776677766
Q ss_pred cc
Q psy259 222 ET 223 (398)
Q Consensus 222 ET 223 (398)
|.
T Consensus 317 ~d 318 (329)
T PRK06835 317 ED 318 (329)
T ss_pred cC
Confidence 54
No 271
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=37.48 E-value=3e+02 Score=28.71 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhh--CCCCCEEEEeCChhhh--hhccccccceEEecCCCCCCCcc
Q psy259 266 SAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKY--RPRCPIISVTRFPQVA--RQLHLHRSIIPLVYEEPSPADWL 341 (398)
Q Consensus 266 ~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSky--RP~~PIIAVT~n~~ta--RqL~L~wGV~Pvl~~~~~~~~w~ 341 (398)
..+--+..++..+.+.+++.|++. .||++++-+|.| +-..|.+.|.|..... .+.....|+.-+.+.
T Consensus 100 FKdRga~~~i~~a~~~g~~~Vv~a-SsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~-------- 170 (398)
T TIGR03844 100 FKELEALPTMQRLKERGGKTLVVA-SAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVD-------- 170 (398)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECC--------
Confidence 344455556666666676665544 588888777765 3456666666644221 122256676655543
Q ss_pred cCHHHHHHHHHHHHHHcCC
Q psy259 342 RDVDTRVAHGIKYGRDRKF 360 (398)
Q Consensus 342 ~d~d~~I~~ai~~ake~Gl 360 (398)
.+.|+..+.+.+.+.+.|+
T Consensus 171 g~~d~a~~~a~~~a~~~g~ 189 (398)
T TIGR03844 171 GDYTDAIALADRIATLPGF 189 (398)
T ss_pred CCHHHHHHHHHHHHHhCCc
Confidence 2344445555555555454
No 272
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=37.38 E-value=4.4e+02 Score=26.42 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|-++.+-. ..-..-+.|..+...-+......|++.+...++.. +.. .++ +.+.++++++...
T Consensus 82 alA~~a~~~Gl~~~iv~---~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~-~~~-~~~---~~~a~~~~~~~~~- 152 (337)
T TIGR01274 82 QVAAVAAHLGMKCVLVQ---ENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFD-IGH-RNS---WERALEEVRGAGG- 152 (337)
T ss_pred HHHHHHHHcCCcEEEEe---ccCCCccccchhccchHHHHHHcCCEEEEeCCccc-ccc-hHH---HHHHHHHHHhcCC-
Confidence 46678999999988741 11000011111223445556779999886553321 111 122 2222222222100
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHh---c--CCcEEEEECCCchHHHHHH----hhCCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASK---V--FAGAIVVLTTTGTSARLIS----KYRPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~---~--~A~aIIv~T~SG~tA~~iS----kyRP~~PIIAVT~n~ 315 (398)
.+++-.... ...+ -..+.....+.++.++ + +.++||+.+=||.|+.-++ .++|.+.|++|.+..
T Consensus 153 ~~~~i~~~~-~~~~-~~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~ 225 (337)
T TIGR01274 153 KPYPIPAGC-SDHP-LGGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASA 225 (337)
T ss_pred ceEEeCCCC-CCCc-cchhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecC
Confidence 000100000 0000 0112233334455554 2 5799999999999975544 467889999997754
No 273
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=37.32 E-value=2.1e+02 Score=29.68 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCc
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGE 222 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~E 222 (398)
.+.+.+++.+.|||+. ...| ..|+-.++.-|+|+|| .|+
T Consensus 179 ~l~~~i~~~~IPVI~G----------~V~t---~e~A~~~~~aGaDgV~-~G~ 217 (369)
T TIGR01304 179 NLKEFIGELDVPVIAG----------GVND---YTTALHLMRTGAAGVI-VGP 217 (369)
T ss_pred HHHHHHHHCCCCEEEe----------CCCC---HHHHHHHHHcCCCEEE-ECC
Confidence 4556667789999851 1333 3456677778999999 444
No 274
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=37.31 E-value=74 Score=30.05 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=35.9
Q ss_pred CcEEEEEC----CCchHH--HHHHhhCCCCCEEEEeCChhhhhhccccc-cceEEecCC
Q psy259 283 AGAIVVLT----TTGTSA--RLISKYRPRCPIISVTRFPQVARQLHLHR-SIIPLVYEE 334 (398)
Q Consensus 283 A~aIIv~T----~SG~tA--~~iSkyRP~~PIIAVT~n~~taRqL~L~w-GV~Pvl~~~ 334 (398)
.+.|++=- .+|..+ ..+.+..|.++|+.+|.......+....| |+..++++.
T Consensus 53 ~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~~~~~~~~~~~~~~Ga~G~l~K~ 111 (216)
T PRK10100 53 GSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYREIENWPHINGVFYAM 111 (216)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHHhCCCCcEEEEECCchhHHHHHHHhcCCeEEEECC
Confidence 46555422 356654 34677789999999999877665544444 999998875
No 275
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=37.21 E-value=4e+02 Score=26.56 Aligned_cols=118 Identities=11% Similarity=0.085 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+++- .|..+.-.-+...-..|++.+...+ .| -++.+...+++++- ..++.
T Consensus 81 alA~~a~~~G~~~~v~-----------~p~~~~~~k~~~~~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~~-g~~~~ 142 (317)
T TIGR02991 81 ALAYAAAEEGVRATIC-----------MSELVPQNKVDEIRRLGAEVRIVGR-----SQ-DDAQEEVERLVADR-GLTML 142 (317)
T ss_pred HHHHHHHHhCCCEEEE-----------cCCCCCHHHHHHHHHcCCEEEEeCC-----CH-HHHHHHHHHHHHhc-CCEee
Confidence 4566899999999883 2333333445666678999887653 22 45555555554321 11111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHHh----hCCCCCEEEEeCC
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLISK----YRPRCPIISVTRF 314 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~n 314 (398)
.+ |+ ..+..+.-..-+.++..+. +.++||+..-+|.+..-+++ ++|...|++|-+.
T Consensus 143 ~~-~~--------n~~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 143 PP-FD--------HPDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred CC-CC--------ChHHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 11 10 0112233334556666666 45789999999988766665 4699999999884
No 276
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=37.06 E-value=1.4e+02 Score=30.59 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=44.5
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..+++. |.+.+..+.|-+--+... -+|..++++-.|.|+-+-.++ .....+-+.|.++++|++.+
T Consensus 85 ~~a~~~--l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~~----------~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 85 ESAREA--MLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDNF----------DTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHH--HHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 445555 666677777766434332 257788888899998875432 23345778899999999976
No 277
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=37.02 E-value=4e+02 Score=25.80 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=18.3
Q ss_pred eEEEeCCCCCCHHHHHHHHHhc
Q psy259 54 IICTIGPASVAVDMLEKIIETE 75 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~G 75 (398)
|+-.-||-+.+.|.++.+-++|
T Consensus 12 v~~aag~~~~~~~~~~~~~~~g 33 (289)
T cd02810 12 FGVAAGPLLKTGELIARAAAAG 33 (289)
T ss_pred CEeCCCCCCCCHHHHHHHHHcC
Confidence 5555699999999999999887
No 278
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=37.00 E-value=22 Score=31.33 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=29.6
Q ss_pred chhcCCcccEEEeecChHHH--hcH--HHHHHhcCeeEEcCCCCCCCC
Q psy259 116 TGEQGKHIKIIAKIENHQGV--KNL--DEIIAEADGIMVARGDLGIEI 159 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v--~n~--deIl~~sDgimvaRgDLg~e~ 159 (398)
|....+...+=.|+||+-++ +|- ++-++.+|+|+++ -|-.++.
T Consensus 24 Le~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~A-aD~~i~~ 70 (122)
T COG1445 24 LEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILA-ADIEVDL 70 (122)
T ss_pred HHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEE-ecccccH
Confidence 44444555677799998654 664 5666889999999 5665543
No 279
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=36.95 E-value=2.9e+02 Score=27.66 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=47.3
Q ss_pred cccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCc
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATR 200 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptr 200 (398)
.+++++.+-+.+- .....+. +|+|.+---+-|-..+...-+..-+++. +..+.|||.+--+- +
T Consensus 109 g~~v~~~v~s~~~---a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~---~~~~iPviaaGGI~---------~- 172 (307)
T TIGR03151 109 GVKVIPVVASVAL---AKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVV---DAVSIPVIAAGGIA---------D- 172 (307)
T ss_pred CCEEEEEcCCHHH---HHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHH---HHhCCCEEEECCCC---------C-
Confidence 4788888866443 2333334 8999872213332322211222333333 34479999864332 2
Q ss_pred hhhhhHHHHHHhCCcEEEec
Q psy259 201 AEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 201 aEvsDVanav~dG~D~vmLS 220 (398)
-.|++.+...|+|+|++.
T Consensus 173 --~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 173 --GRGMAAAFALGAEAVQMG 190 (307)
T ss_pred --HHHHHHHHHcCCCEeecc
Confidence 357899999999999995
No 280
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=36.58 E-value=1.6e+02 Score=29.41 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=53.6
Q ss_pred HHHHHhCCcEEEecCccC-CCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcE
Q psy259 207 ANAVLDGADCVMLSGETA-KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGA 285 (398)
Q Consensus 207 anav~dG~D~vmLS~ETA-~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~a 285 (398)
-.-+.+|||-+=+.||+. -|.-|+..-+.+.|+.-..+.-. ... ..+...|+.. ..+.+.|.+.+|+.
T Consensus 45 ~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~------~~~--~~~ISIDT~~---~~va~~AL~~Gadi 113 (282)
T PRK11613 45 NLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIA------QRF--EVWISVDTSK---PEVIRESAKAGAHI 113 (282)
T ss_pred HHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH------hcC--CCeEEEECCC---HHHHHHHHHcCCCE
Confidence 334678999999999988 77778877777777665554321 000 1122222222 12334444558874
Q ss_pred E---EEECCCchHHHHHHhhCCCCCEEEEe
Q psy259 286 I---VVLTTTGTSARLISKYRPRCPIISVT 312 (398)
Q Consensus 286 I---Iv~T~SG~tA~~iSkyRP~~PIIAVT 312 (398)
| --++ .-..+..+++| .||++..-
T Consensus 114 INDI~g~~-d~~~~~~~a~~--~~~vVlmh 140 (282)
T PRK11613 114 INDIRSLS-EPGALEAAAET--GLPVCLMH 140 (282)
T ss_pred EEECCCCC-CHHHHHHHHHc--CCCEEEEc
Confidence 4 2333 33567778887 57777663
No 281
>PRK05638 threonine synthase; Validated
Probab=36.45 E-value=2.6e+02 Score=29.26 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
.+...|+.+|.|+.+- .|..+...-+...-..||+.+... |.| -++++...+++++ ...++
T Consensus 126 alA~~aa~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~vi~v~-----~~~-~~~~~~a~~~~~~--~~~~~ 186 (442)
T PRK05638 126 SVAAYSARAGKEAFVV-----------VPRKVDKGKLIQMIAFGAKIIRYG-----ESV-DEAIEYAEELARL--NGLYN 186 (442)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCCHHHHHHHHhcCcEEEEEC-----CCH-HHHHHHHHHHHHh--CCeEe
Confidence 4566789999999984 566555566777888899998874 333 5777766665432 11111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhh----CC-----CC-CEEEEeC
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKY----RP-----RC-PIISVTR 313 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSky----RP-----~~-PIIAVT~ 313 (398)
...+. . | ...+....-+.++..+++.+.||+.+-+|.+..-+.++ +| +. .|++|-+
T Consensus 187 ~~~~~-----n--p-~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~ 252 (442)
T PRK05638 187 VTPEY-----N--I-IGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQT 252 (442)
T ss_pred cCCCC-----C--h-hHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEec
Confidence 10010 0 1 12222333455677777799999999999998666553 33 23 5888876
No 282
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=36.39 E-value=4.2e+02 Score=27.52 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+.+- .|..+--.-+.+.-..|++.+...+ ..-++++...+++++-. .++.
T Consensus 127 alA~~aa~~Gi~~~Iv-----------vP~~~~~~K~~~ir~~GAeVi~~~~------~~~~a~~~a~~~a~~~g-~~~v 188 (396)
T TIGR03528 127 GVAWAANQLGQKSVVY-----------MPKGSAQIRLENIRAEGAECTITDL------NYDDAVRLAWKMAQENG-WVMV 188 (396)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCcHHHHHHHHhcCCEEEEECC------CHHHHHHHHHHHHHhcC-cEee
Confidence 3566789999999984 3433333556888889999876632 34577777777765421 1111
Q ss_pred hH----HHHHHhhcCCCCCChHHHHHHHHHHHHHhcC------CcEEEEECCCchHHHHHHh-----hCCCCC-EEEEeC
Q psy259 250 TK----LLTELKSMLPLPIDSAHSVAIAAVEAASKVF------AGAIVVLTTTGTSARLISK-----YRPRCP-IISVTR 313 (398)
Q Consensus 250 ~~----~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~------A~aIIv~T~SG~tA~~iSk-----yRP~~P-IIAVT~ 313 (398)
.+ -|++ .+....+-....+.++..+++ .++||+.+-+|.++-.++. ++|+.| |++|-+
T Consensus 189 ~~~~~~~~~~------~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep 262 (396)
T TIGR03528 189 QDTAWEGYEK------IPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEP 262 (396)
T ss_pred cccccccccc------CchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEcc
Confidence 10 0110 011112222334455555553 6889988877876544433 367765 888887
Q ss_pred C
Q psy259 314 F 314 (398)
Q Consensus 314 n 314 (398)
.
T Consensus 263 ~ 263 (396)
T TIGR03528 263 D 263 (396)
T ss_pred C
Confidence 4
No 283
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=36.05 E-value=4.5e+02 Score=26.17 Aligned_cols=124 Identities=20% Similarity=0.099 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHH---hCCcEEEecCccCCCCChHHHHHHHHHHHHHH
Q psy259 167 AQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL---DGADCVMLSGETAKGDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 167 ~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~---dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~a 243 (398)
+.+++++..++.|+|||.= .-..-.|+-+ .--+.+++ .|+|++.+++ ..| ..+|.-....+
T Consensus 74 ~l~~~i~~l~~~g~~VilD------~K~~DI~nTv--~~ya~a~~~~~~g~DavTVhp--~~G------~d~l~~~~~~~ 137 (278)
T PRK00125 74 QLERTIAYLREAGVLVIAD------AKRGDIGSTA--EAYAKAAFESPLEADAVTVSP--YMG------FDSLEPYLEYA 137 (278)
T ss_pred HHHHHHHHHHHCCCcEEEE------eecCChHHHH--HHHHHHHhcCccCCcEEEECC--cCC------HHHHHHHHHHH
Confidence 4556889999999999972 1112233111 22345555 6899999984 223 34444444444
Q ss_pred Hh---hhhh------h--HHHHHHhhcCCCCCChHHHHHHHHHHHHH----hcCCcEEEEECCCchHHHHHHhhCCCCCE
Q psy259 244 EA---AIWH------T--KLLTELKSMLPLPIDSAHSVAIAAVEAAS----KVFAGAIVVLTTTGTSARLISKYRPRCPI 308 (398)
Q Consensus 244 E~---~~~~------~--~~~~~~~~~~~~~~~~~~~ia~aav~~A~----~~~A~aIIv~T~SG~tA~~iSkyRP~~PI 308 (398)
+. -++- . .-|.++. .....+..+.++.-+..... ..+...+||-++-+.-+..+-+..|..||
T Consensus 138 ~~~~k~vfVlvlTSnp~s~~lq~~~--~~~~~~l~~~V~~~a~~~~~~~~~~~g~~G~VVgaT~p~e~~~iR~~~~~~~i 215 (278)
T PRK00125 138 EEHGKGVFVLCRTSNPGGSDLQFLR--TADGRPLYQHVADLAAALNNLGNCGYGSIGLVVGATFPPELAAVRKILGGMPL 215 (278)
T ss_pred HhcCCEEEEEEeCCCCCHHHHHhhh--ccCCCcHHHHHHHHHHHHhccccCCCCCCEEEECCCCHHHHHHHHHhCCCCeE
Confidence 32 1110 0 0111111 00111344555555444433 25667777777777777777776666554
No 284
>PLN00011 cysteine synthase
Probab=35.97 E-value=4.6e+02 Score=26.21 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=68.3
Q ss_pred HHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhh
Q psy259 171 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 250 (398)
Q Consensus 171 ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 250 (398)
+...|+..|.|+.+. .|..+.-.-+...-..|++.++-. +. .+ .-+.++..+++.++. ...++.
T Consensus 84 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~-~~-~~--~~~~~~~a~~l~~~~-~~~~~~ 147 (323)
T PLN00011 84 LACIGAARGYKVILV-----------MPSTMSLERRIILRALGAEVHLTD-QS-IG--LKGMLEKAEEILSKT-PGGYIP 147 (323)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHcCCEEEEEC-CC-cC--hHHHHHHHHHHHHhC-CCeEEe
Confidence 456789999999984 343333344456667899987654 32 11 122333333333311 011111
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCchHHHH----HHhhCCCCCEEEEeCCh
Q psy259 251 KLLTELKSMLPLPIDSAHSVAIAAVEAASKV--FAGAIVVLTTTGTSARL----ISKYRPRCPIISVTRFP 315 (398)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~--~A~aIIv~T~SG~tA~~----iSkyRP~~PIIAVT~n~ 315 (398)
.-|+ .+.++.--....+.++..+. ..++||+.+=+|.|..- +..++|.+.|++|-+..
T Consensus 148 ~~~~-------n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~ 211 (323)
T PLN00011 148 QQFE-------NPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVE 211 (323)
T ss_pred cccc-------CCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 1111 01122111223455666654 58999999999988644 44568999999999854
No 285
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=35.96 E-value=40 Score=32.27 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=46.7
Q ss_pred CeeEEcCCCCCCC-----CChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcC--CCCCchhhhhHHHHHHhCCcEEE
Q psy259 146 DGIMVARGDLGIE-----IPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKK--PRATRAEISDVANAVLDGADCVM 218 (398)
Q Consensus 146 DgimvaRgDLg~e-----~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~--~~PtraEvsDVanav~dG~D~vm 218 (398)
|.|+|.-=.|--. -..+++..+-+++=+.|++.+.||++++|+=..--.. .+|+.+++-+ ..+|...||.||
T Consensus 132 ~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~-sg~Ie~~AD~vl 210 (259)
T PF03796_consen 132 DVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRE-SGAIEQDADVVL 210 (259)
T ss_dssp EEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCS-TSSHHHH-SEEE
T ss_pred CEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhh-hHHHHHHHhhhh
Confidence 6777764443111 1235666777778888999999999999987765443 3566543321 356778899998
Q ss_pred e
Q psy259 219 L 219 (398)
Q Consensus 219 L 219 (398)
+
T Consensus 211 ~ 211 (259)
T PF03796_consen 211 F 211 (259)
T ss_dssp E
T ss_pred h
Confidence 8
No 286
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.88 E-value=58 Score=34.49 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=32.3
Q ss_pred HHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 134 GVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 134 ~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
=+++|++.+...|++++.-.-=|+=.+ -+.||+.|+++|+||.+
T Consensus 133 ll~~~~~~l~~~~~vVLSDY~KG~L~~-------~q~~I~~ar~~~~pVLv 176 (467)
T COG2870 133 LLEKIKNALKSFDALVLSDYAKGVLTN-------VQKMIDLAREAGIPVLV 176 (467)
T ss_pred HHHHHHHHhhcCCEEEEeccccccchh-------HHHHHHHHHHcCCcEEE
Confidence 357888999999999997322222111 34688999999999998
No 287
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=35.82 E-value=4.3e+02 Score=25.81 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=56.4
Q ss_pred hHHHhc-HHHHHHh-cCeeEEcCCCCC--CCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHH
Q psy259 132 HQGVKN-LDEIIAE-ADGIMVARGDLG--IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVA 207 (398)
Q Consensus 132 ~~~v~n-~deIl~~-sDgimvaRgDLg--~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVa 207 (398)
.+++++ ++-.++. .||+++. |--| ..+..++=..+-+..++.+ .-..|+++.+ ...+-.|+-+-+
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~gv---------~~~~~~~~i~~a 89 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEAV-NGRVPVIAGT---------GSNSTAEAIELT 89 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHHh-CCCCcEEeec---------CCchHHHHHHHH
Confidence 344443 3444544 8999986 4322 2233333223333333333 2235777532 122334554545
Q ss_pred HHHH-hCCcEEEecCccCCCCChHHHHHHHHHHHHHHHh
Q psy259 208 NAVL-DGADCVMLSGETAKGDYPVECVRAMHNTCKEAEA 245 (398)
Q Consensus 208 nav~-dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~ 245 (398)
.... -|+|++|+..=.-....+-+.+++...|+..++.
T Consensus 90 ~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~ 128 (292)
T PRK03170 90 KFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDL 128 (292)
T ss_pred HHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 4443 4999999976554444567888888888876654
No 288
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=35.75 E-value=29 Score=31.24 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCEEEeeh
Q psy259 169 KQMIAKCNKVGKPVICATQ 187 (398)
Q Consensus 169 k~ii~~c~~~gkpvi~ATQ 187 (398)
..+|+.-.+.|||||+||-
T Consensus 66 ~evi~~I~~~G~PviVAtD 84 (138)
T PF04312_consen 66 SEVIEWISEYGKPVIVATD 84 (138)
T ss_pred HHHHHHHHHcCCEEEEEec
Confidence 3577778899999999987
No 289
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=35.75 E-value=51 Score=31.92 Aligned_cols=44 Identities=23% Similarity=0.405 Sum_probs=33.1
Q ss_pred HHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 133 QGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 133 ~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
+.++.++++++..|.+.|+.| |+-... ...+++.+++.++|+++
T Consensus 81 ~~~~~~~~~~~~~davvig~G-l~~~~~-------~~~l~~~~~~~~~pvVl 124 (272)
T TIGR00196 81 WKVDEDEELLERYDVVVIGPG-LGQDPS-------FKKAVEEVLELDKPVVL 124 (272)
T ss_pred hhHHHHHhhhccCCEEEEcCC-CCCCHH-------HHHHHHHHHhcCCCEEE
Confidence 356777888888999999877 543221 45678888889999998
No 290
>PRK08526 threonine dehydratase; Provisional
Probab=35.75 E-value=4.4e+02 Score=27.48 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+.+- .|..+.-.-+...-..||+.+.. + ...-++++...+++++-. ..+.
T Consensus 82 avA~aa~~~Gi~~~Iv-----------mP~~~p~~k~~~~r~~GA~Vv~~-g-----~~~~~a~~~a~~~a~~~g-~~~v 143 (403)
T PRK08526 82 GVAISAKKFGIKAVIV-----------MPEATPLLKVSGTKALGAEVILK-G-----DNYDEAYAFALEYAKENN-LTFI 143 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHhCCCEEEEE-C-----CCHHHHHHHHHHHHHhcC-CEee
Confidence 4556799999999984 35555455566777889998764 3 234567666655543311 1111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHH----hhCCCCCEEEEeCChh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLIS----KYRPRCPIISVTRFPQ 316 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iS----kyRP~~PIIAVT~n~~ 316 (398)
.+ |++ .+....-..-+.++..++ ..++||+..-+|.++.-++ ..+|.+.||+|-+...
T Consensus 144 ~p-~~~--------~~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~ 206 (403)
T PRK08526 144 HP-FED--------EEVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGA 206 (403)
T ss_pred CC-CCC--------HHHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 10 110 011111222355666655 5799999998888865444 4679999999988543
No 291
>PLN02550 threonine dehydratase
Probab=35.71 E-value=3.2e+02 Score=30.26 Aligned_cols=120 Identities=18% Similarity=0.141 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|++.|.++.+. .|..+-..-+...-..|++.+.- + ...-++.+...+++++ +...+.
T Consensus 171 gvA~aA~~lGika~Iv-----------mP~~tp~~Kv~~~r~~GAeVvl~-g-----~~~dea~~~A~~la~e-~g~~fi 232 (591)
T PLN02550 171 GVALSAQRLGCDAVIA-----------MPVTTPEIKWQSVERLGATVVLV-G-----DSYDEAQAYAKQRALE-EGRTFI 232 (591)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEe-C-----CCHHHHHHHHHHHHHh-cCCEEE
Confidence 3556799999999884 34333334456667789987765 3 2244677766666543 221111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCchHHHHHH----hhCCCCCEEEEeCChh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF--AGAIVVLTTTGTSARLIS----KYRPRCPIISVTRFPQ 316 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~--A~aIIv~T~SG~tA~~iS----kyRP~~PIIAVT~n~~ 316 (398)
. -|++ .+....-..-+.++..+++ .++||+..-+|.++.-++ .++|...||+|-+...
T Consensus 233 ~-pfdd--------p~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a 296 (591)
T PLN02550 233 P-PFDH--------PDVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDA 296 (591)
T ss_pred C-CCCC--------hHHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1 0110 1122222334667777774 699999999998875544 4679999999998654
No 292
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=35.48 E-value=1.1e+02 Score=31.24 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=44.5
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..+++. |.+.+.++.|-+-.+... -+|++++++-.|.|+.+-.++ .....+-..|.+.|+|.|.+
T Consensus 83 ~aa~~~--l~~inp~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~~----------~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 83 IAAKEH--LRKINSEVEIVPVVTDVT-VEELEELVKEVDLIIDATDNF----------DTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHH--HHHHCCCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 444555 566677777766554432 358889988899999885432 23344678899999999975
No 293
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=35.46 E-value=1.9e+02 Score=26.31 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=28.8
Q ss_pred hhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHH
Q psy259 204 SDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 242 (398)
Q Consensus 204 sDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~ 242 (398)
.++..+..-|+|++.+.+.--.-.-|.++++.+.+.+++
T Consensus 172 ~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~ 210 (212)
T PRK00043 172 ENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRA 210 (212)
T ss_pred HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhh
Confidence 567778888999999865544445688888877766554
No 294
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=35.27 E-value=70 Score=31.78 Aligned_cols=46 Identities=26% Similarity=0.428 Sum_probs=35.6
Q ss_pred HHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 134 GVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 134 ~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
+.+-.+|+.+.+|++.|.=|=|. ++-...-+..++.+|+.|+|++.
T Consensus 45 ~~eE~~e~~kia~AL~INIGTL~-----~~~~~~m~~A~~~An~~~~PvvL 90 (265)
T COG2145 45 APEEVEEFAKIADALLINIGTLS-----AERIQAMRAAIKAANESGKPVVL 90 (265)
T ss_pred CHHHHHHHHHhccceEEeeccCC-----hHHHHHHHHHHHHHHhcCCCEEe
Confidence 45567888889999999988662 33344556778899999999996
No 295
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=35.27 E-value=38 Score=36.49 Aligned_cols=74 Identities=26% Similarity=0.405 Sum_probs=50.2
Q ss_pred HHHHHHhhchhcC-CcccEEEeecChHHHhcHHHHHHh--cC--------eeEEcCCCCCCCCChhhHHHHHHHHH----
Q psy259 108 RLIEKLMATGEQG-KHIKIIAKIENHQGVKNLDEIIAE--AD--------GIMVARGDLGIEIPPWKVFLAQKQMI---- 172 (398)
Q Consensus 108 ~~ir~~~~l~~~~-~~~~iiaKIE~~~~v~n~deIl~~--sD--------gimvaRgDLg~e~~~~~v~~~qk~ii---- 172 (398)
..++++ .++.. +.|.||.=||+.+++-|.++|+.. -+ =||+||.|=++..|.---...-|.-+
T Consensus 156 ~~~~E~--~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~ 233 (491)
T PF14010_consen 156 ITVKEW--IGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGRDPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLY 233 (491)
T ss_dssp HHHHH---SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT---SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhHHHh--ccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcCCchheeeeeccCchhhccchHHHHHHHHHHHHHHH
Confidence 556676 65543 579999999999999999999986 12 38999999999999844444444444
Q ss_pred HHHHHcCCCEE
Q psy259 173 AKCNKVGKPVI 183 (398)
Q Consensus 173 ~~c~~~gkpvi 183 (398)
+.-.+.|.|+.
T Consensus 234 ~~~~e~gi~Iy 244 (491)
T PF14010_consen 234 ELEEELGIPIY 244 (491)
T ss_dssp HHHHHHT-EEE
T ss_pred HHHHhcCCcee
Confidence 44467788764
No 296
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=35.27 E-value=3.9e+02 Score=27.26 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=58.5
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
+..++++. ..+. .+.+++-.=..+++ |.+.+. .|.+=||-+|+.- -.+++.+.+.|||||+
T Consensus 77 ~~~~L~~~--~~~~--Gi~~~stpfd~~sv---d~l~~~~v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvil 138 (329)
T TIGR03569 77 DHRELKEY--CESK--GIEFLSTPFDLESA---DFLEDLGVPRFKIPSGEITN-----------APLLKKIARFGKPVIL 138 (329)
T ss_pred HHHHHHHH--HHHh--CCcEEEEeCCHHHH---HHHHhcCCCEEEECcccccC-----------HHHHHHHHhcCCcEEE
Confidence 66666666 4433 57888866565555 444456 8999999998832 2356677889999999
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHHh-CCc
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVLD-GAD 215 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~d-G~D 215 (398)
.|-| .|-.|+......+.. |.+
T Consensus 139 StGm---------atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 139 STGM---------ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred ECCC---------CCHHHHHHHHHHHHHcCCC
Confidence 7765 367788888888874 554
No 297
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=35.07 E-value=2.9e+02 Score=28.69 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+++- .|..+.-.-+.+.-..|++.+...+ ..-+++....+++++-. .++.
T Consensus 130 alA~~a~~~G~~~~Iv-----------vp~~~~~~k~~~i~~~GA~Vi~v~~------~~~~~~~~a~~~~~~~g-~~~v 191 (399)
T PRK08206 130 GVAWAAQQLGQKAVIY-----------MPKGSSEERVDAIRALGAECIITDG------NYDDSVRLAAQEAQENG-WVVV 191 (399)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC------CHHHHHHHHHHHHHHcC-CEEe
Confidence 3556789999999984 4555555566788889999766542 24566666666544311 1110
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC-----CcEEEEECCCchHHHHHHhh-----CC-CCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF-----AGAIVVLTTTGTSARLISKY-----RP-RCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~-----A~aIIv~T~SG~tA~~iSky-----RP-~~PIIAVT~n~ 315 (398)
.. +... .....+....+-....+.|+.+++. .++||+.+=+|.++.-++++ ++ ...|++|-+..
T Consensus 192 ~~-~~~~-~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~g 266 (399)
T PRK08206 192 QD-TAWE-GYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQ 266 (399)
T ss_pred cC-cccc-CcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCC
Confidence 00 0000 0000011122222334455555542 68999999899887666543 24 55688887744
No 298
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=34.96 E-value=2.6e+02 Score=27.10 Aligned_cols=80 Identities=19% Similarity=0.091 Sum_probs=46.5
Q ss_pred cccEEEeecChHHHhcHHHHHH----h-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc--CCCEEEeehhhHHhhc
Q psy259 122 HIKIIAKIENHQGVKNLDEIIA----E-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV--GKPVICATQMLESMIK 194 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~----~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~--gkpvi~ATQmLeSMi~ 194 (398)
++.|.+||=-..--.+..++.+ . +|+|-|.-+.-| . +.+.-..|+..+++ ..|||- +
T Consensus 134 ~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g-----~--~~a~~~~I~~i~~~~~~ipIIg---------N 197 (231)
T TIGR00736 134 NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPG-----K--PYADMDLLKILSEEFNDKIIIG---------N 197 (231)
T ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCC-----C--chhhHHHHHHHHHhcCCCcEEE---------E
Confidence 5789999953110012223322 2 899999533221 1 11334445555554 388885 5
Q ss_pred CCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 195 KPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 195 ~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
+..-|.. |+...+..|+|+||+.
T Consensus 198 GgI~s~e---da~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 198 NSIDDIE---SAKEMLKAGADFVSVA 220 (231)
T ss_pred CCcCCHH---HHHHHHHhCCCeEEEc
Confidence 5555544 7777777899999985
No 299
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=34.61 E-value=45 Score=27.63 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=26.2
Q ss_pred CCcEEEEECCCchHHHHH-----HhhCCCCCEEEEeCChh
Q psy259 282 FAGAIVVLTTTGTSARLI-----SKYRPRCPIISVTRFPQ 316 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~i-----SkyRP~~PIIAVT~n~~ 316 (398)
.-+.+|++|.+|.+...+ +|-+ .++|+++|.+..
T Consensus 60 ~~~~~i~iS~~g~~~~~~~~~~~a~~~-g~~iv~iT~~~~ 98 (139)
T cd05013 60 PGDVVIAISFSGETKETVEAAEIAKER-GAKVIAITDSAN 98 (139)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHc-CCeEEEEcCCCC
Confidence 457899999999976542 3444 699999999875
No 300
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.51 E-value=48 Score=27.71 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=25.5
Q ss_pred CCcEEEEECCCchHHHH-----HHhhCCCCCEEEEeCCh
Q psy259 282 FAGAIVVLTTTGTSARL-----ISKYRPRCPIISVTRFP 315 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~-----iSkyRP~~PIIAVT~n~ 315 (398)
.-+.+|++|.+|.|... .+|-| .+|||++|.++
T Consensus 47 ~~d~vi~iS~sG~t~~~~~~~~~a~~~-g~~vi~iT~~~ 84 (128)
T cd05014 47 PGDVVIAISNSGETDELLNLLPHLKRR-GAPIIAITGNP 84 (128)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 44789999999998743 33444 69999999965
No 301
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=34.25 E-value=1.3e+02 Score=27.90 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEe
Q psy259 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 165 ~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmL 219 (398)
....+..++.++++|++|.+-| ++ .| .....++..|+|+|+-
T Consensus 176 ~~~~~~~v~~~~~~G~~v~~wt------vn--~~-----~~~~~~~~~Gvd~i~T 217 (220)
T cd08579 176 STLNKEFIRQAHQNGKKVYVWT------VN--DP-----DDMQRYLAMGVDGIIT 217 (220)
T ss_pred hhcCHHHHHHHHHCCCEEEEEc------CC--CH-----HHHHHHHHcCCCEEeC
Confidence 3456789999999999999976 11 12 3447788889999863
No 302
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=34.11 E-value=2.8e+02 Score=28.53 Aligned_cols=96 Identities=24% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh----cCeeEEcCCCCCCCCCh-hhHHHHHHHHH
Q psy259 98 KEPNLYESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE----ADGIMVARGDLGIEIPP-WKVFLAQKQMI 172 (398)
Q Consensus 98 ~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~----sDgimvaRgDLg~e~~~-~~v~~~qk~ii 172 (398)
+.+.-| |||..+|+. . +.+||.| +|-+-+++..+ +|||.|+ |-=|-.+.- ..-...-.+|.
T Consensus 209 ~~~~~w-~~i~~~~~~--~-----~~pvivK-----gv~~~~da~~~~~~G~~~i~vs-~hGGr~~d~~~~~~~~L~~i~ 274 (356)
T PF01070_consen 209 DPSLTW-DDIEWIRKQ--W-----KLPVIVK-----GVLSPEDAKRAVDAGVDGIDVS-NHGGRQLDWGPPTIDALPEIR 274 (356)
T ss_dssp -TT-SH-HHHHHHHHH--C-----SSEEEEE-----EE-SHHHHHHHHHTT-SEEEEE-SGTGTSSTTS-BHHHHHHHHH
T ss_pred CCCCCH-HHHHHHhcc--c-----CCceEEE-----ecccHHHHHHHHhcCCCEEEec-CCCcccCccccccccccHHHH
Q ss_pred HHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 173 AKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 173 ~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
+.+ ....|+|. ....=+-. ||+.|+.-|||+|.+.
T Consensus 275 ~~~-~~~~~i~~---------dgGir~g~---Dv~kalaLGA~~v~ig 309 (356)
T PF01070_consen 275 AAV-GDDIPIIA---------DGGIRRGL---DVAKALALGADAVGIG 309 (356)
T ss_dssp HHH-TTSSEEEE---------ESS--SHH---HHHHHHHTT-SEEEES
T ss_pred hhh-cCCeeEEE---------eCCCCCHH---HHHHHHHcCCCeEEEc
No 303
>PLN02929 NADH kinase
Probab=34.11 E-value=43 Score=33.82 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=28.8
Q ss_pred HhcCCcEEEEECCCchHHHHHHhhC-------CCCCEEEEeC
Q psy259 279 SKVFAGAIVVLTTTGTSARLISKYR-------PRCPIISVTR 313 (398)
Q Consensus 279 ~~~~A~aIIv~T~SG~tA~~iSkyR-------P~~PIIAVT~ 313 (398)
.+..++.++|-|.+|.||..+|--- |.+..+.+||
T Consensus 192 ~~~~~DGliVsTpTGSTAY~lSAGG~i~Piv~P~l~~~vltP 233 (301)
T PLN02929 192 INVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREP 233 (301)
T ss_pred EEeecCcEEEeCCccHHHHHHhcCCCCCCCCCcccceEEEEe
Confidence 3457899999999999999999988 4666667776
No 304
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=34.04 E-value=1.3e+02 Score=26.23 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.3
Q ss_pred hcCCCCCchhhhhHHHHHHhCCcEEEecCcc
Q psy259 193 IKKPRATRAEISDVANAVLDGADCVMLSGET 223 (398)
Q Consensus 193 i~~~~PtraEvsDVanav~dG~D~vmLS~ET 223 (398)
|.-|=.-|-+..-|..|...|||+|++.|--
T Consensus 32 IrvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred EEccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 3455667778889999999999999997655
No 305
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=33.98 E-value=65 Score=29.79 Aligned_cols=72 Identities=19% Similarity=0.424 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHhhchhcCCcccEE--EeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc
Q psy259 102 LYESNVRLIEKLMATGEQGKHIKII--AKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV 178 (398)
Q Consensus 102 ~~vddV~~ir~~~~l~~~~~~~~ii--aKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~ 178 (398)
.|-.-...+++. ..+.|....++ +.-...+-++.++..+.. .|||++...|-. . ....+++|.++
T Consensus 12 ~~~~~~~g~~~~--a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~------~----~~~~l~~~~~~ 79 (257)
T PF13407_consen 12 FWQQVIKGAKAA--AKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD------S----LAPFLEKAKAA 79 (257)
T ss_dssp HHHHHHHHHHHH--HHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTT------T----THHHHHHHHHT
T ss_pred HHHHHHHHHHHH--HHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH------H----HHHHHHHHhhc
Confidence 343344666666 77777777775 333334445667777766 899999966541 1 12466789999
Q ss_pred CCCEEEe
Q psy259 179 GKPVICA 185 (398)
Q Consensus 179 gkpvi~A 185 (398)
|.||++-
T Consensus 80 gIpvv~~ 86 (257)
T PF13407_consen 80 GIPVVTV 86 (257)
T ss_dssp TSEEEEE
T ss_pred CceEEEE
Confidence 9999983
No 306
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=33.90 E-value=1.1e+02 Score=25.90 Aligned_cols=40 Identities=20% Similarity=0.122 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCcEEEEECCCch------HHHHHHhhCCCCCEEEEe
Q psy259 272 IAAVEAASKVFAGAIVVLTTTGT------SARLISKYRPRCPIISVT 312 (398)
Q Consensus 272 ~aav~~A~~~~A~aIIv~T~SG~------tA~~iSkyRP~~PIIAVT 312 (398)
...++.|.+.+++.||+-|+.+. +|..+.+ +.+|||+.|=
T Consensus 93 ~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~~-~a~~pVLvv~ 138 (144)
T PRK15118 93 QVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLIN-TVHVDMLIVP 138 (144)
T ss_pred HHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHHh-hCCCCEEEec
Confidence 34456788889999999888432 2223333 4558888873
No 307
>PRK11761 cysM cysteine synthase B; Provisional
Probab=33.90 E-value=4.7e+02 Score=25.78 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+.+- .|..+.-.-+...-..|++.+...++ |.| -++.+...+++++- ..++.
T Consensus 77 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~~~~~---~~~-~~~~~~a~~l~~~~-~~~~~ 140 (296)
T PRK11761 77 ALAMIAAIKGYRMKLI-----------MPENMSQERRAAMRAYGAELILVPKE---QGM-EGARDLALQMQAEG-EGKVL 140 (296)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHhcc-CCEec
Confidence 3556889999999984 23333233445555689999888642 333 24433333333221 11111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCchHH----HHHHhhCCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV--FAGAIVVLTTTGTSA----RLISKYRPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~--~A~aIIv~T~SG~tA----~~iSkyRP~~PIIAVT~n~ 315 (398)
.+ |++ +..+..-....+.++.+++ ..++||+.+-+|.+. +.+..++|.+.|++|-+..
T Consensus 141 ~~-~~n-------~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~ 204 (296)
T PRK11761 141 DQ-FAN-------PDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEE 204 (296)
T ss_pred CC-CCC-------hhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 11 111 0011000112234566665 379999999999776 5555678999999999964
No 308
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=33.86 E-value=1e+02 Score=31.02 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=30.5
Q ss_pred CCcEEEEECCCchHHHHH-----HhhCCCCCEEEEeCChhhhhhccccccceEEecC
Q psy259 282 FAGAIVVLTTTGTSARLI-----SKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYE 333 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~i-----SkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~ 333 (398)
.-+.+|++|.||.|...+ ++-| .++||++|.+..++ +++=.+|...+.++
T Consensus 78 ~~dlvI~iS~SG~T~e~~~a~~~a~~~-ga~vIaIT~~~~L~-~~a~~~~~~~i~ip 132 (337)
T PRK08674 78 EKTLVIAVSYSGNTEETLSAVEQALKR-GAKIIAITSGGKLK-EMAKEHGLPVIIVP 132 (337)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHC-CCeEEEECCCchHH-HHHHhcCCeEEEeC
Confidence 446788888999876543 3444 57899998766533 33333454444443
No 309
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=33.84 E-value=1.7e+02 Score=27.37 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHh-CCcEEEecCccCCCCChHHHHHHHHHHH
Q psy259 162 WKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLSGETAKGDYPVECVRAMHNTC 240 (398)
Q Consensus 162 ~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~d-G~D~vmLS~ETA~G~yP~eaV~~m~~I~ 240 (398)
++.....+.+++.+++.|..|.+.. ....+.+..++.+++..+.+ |+|.|.|. +|.=.-.|.+.-+..+.+-
T Consensus 104 ~~~~~~~~~~v~~ak~~g~~v~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 104 EEALERIEEAVKYAKELGYEVAFGC------EDASRTDPEELLELAEALAEAGADIIYLA-DTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEE------TTTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCc------cccccccHHHHHHHHHHHHHcCCeEEEee-CccCCcCHHHHHHHHHHHH
Confidence 5566677788999999999997643 24456677888888888875 99999996 7777778987666665555
Q ss_pred HH
Q psy259 241 KE 242 (398)
Q Consensus 241 ~~ 242 (398)
+.
T Consensus 177 ~~ 178 (237)
T PF00682_consen 177 EA 178 (237)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 310
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=33.58 E-value=1.4e+02 Score=27.56 Aligned_cols=69 Identities=26% Similarity=0.371 Sum_probs=43.2
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHH--HHHHHHHHHHHcCCCEE
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFL--AQKQMIAKCNKVGKPVI 183 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~--~qk~ii~~c~~~gkpvi 183 (398)
++.++.+. |.+.|.++.++. +.++ ++..|||++. | + ..+.+.... ..+..++++.+.|||+.
T Consensus 12 ~~~~~~~~--l~~~G~~~~~~~---------~~~~-~~~~d~iii~-G--~-~~~~~~~~~~~~~~~~i~~~~~~~~Pil 75 (200)
T PRK13143 12 NLRSVSKA--LERAGAEVVITS---------DPEE-ILDADGIVLP-G--V-GAFGAAMENLSPLRDVILEAARSGKPFL 75 (200)
T ss_pred cHHHHHHH--HHHCCCeEEEEC---------CHHH-HccCCEEEEC-C--C-CCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 67788888 888887777763 2233 3568999994 6 1 112222222 23466788889999987
Q ss_pred Ee---ehhhH
Q psy259 184 CA---TQMLE 190 (398)
Q Consensus 184 ~A---TQmLe 190 (398)
-- -|+|-
T Consensus 76 gIC~G~q~l~ 85 (200)
T PRK13143 76 GICLGMQLLF 85 (200)
T ss_pred EECHHHHHHh
Confidence 43 35555
No 311
>PRK07591 threonine synthase; Validated
Probab=33.54 E-value=5.6e+02 Score=26.74 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
.+...|+++|.|+.+- .|..+.-.-+......||+.+..- |.| -++++.+.+++++-+... +
T Consensus 151 alA~~aa~~Gl~~~I~-----------vP~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~-~ 212 (421)
T PRK07591 151 SVAAHAARAGLDSCVF-----------IPADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWG-F 212 (421)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEE-E
Confidence 4567889999999984 454555556777788999988764 345 366676666654321111 1
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC---CcEEEEECCCchHHHHHHh----h-------CCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF---AGAIVVLTTTGTSARLISK----Y-------RPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~---A~aIIv~T~SG~tA~~iSk----y-------RP~~PIIAVT~n~ 315 (398)
. +. ...+.-..-..++ +.++..+++ .++||+.+=+|.+..-+.+ + +|...|++|-+..
T Consensus 213 ~---n~--~~~p~~ieG~~Ti---a~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g 284 (421)
T PRK07591 213 V---NI--NLRPYYAEGSKTL---GYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEG 284 (421)
T ss_pred e---cC--CCCcccccchHHH---HHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCC
Confidence 0 00 0001111111233 556667664 6899999999999866554 3 6888999999853
No 312
>PRK08185 hypothetical protein; Provisional
Probab=33.52 E-value=3.1e+02 Score=27.45 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=71.2
Q ss_pred CcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCC---
Q psy259 121 KHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKP--- 196 (398)
Q Consensus 121 ~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~--- 196 (398)
..+.|...+..-.-++.+..-++. -+.||+.-.+| |.++-...-+++.+.|+..|.+|=.-=-.+-. ....
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l----~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~-~e~~~~~ 141 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLL----PYEENVALTKEVVELAHKVGVSVEGELGTIGN-TGTSIEG 141 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHcCCeEEEEEeeccC-ccccccc
Confidence 368898888887666665555555 67899996654 88888899999999999999988321111100 0000
Q ss_pred CCC---chhhhhHHHHHHh-CCcEEEecCccCCCCChH
Q psy259 197 RAT---RAEISDVANAVLD-GADCVMLSGETAKGDYPV 230 (398)
Q Consensus 197 ~Pt---raEvsDVanav~d-G~D~vmLS~ETA~G~yP~ 230 (398)
... .-...++..++.. |+|++-.|=-|+-|.||-
T Consensus 142 ~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~ 179 (283)
T PRK08185 142 GVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPK 179 (283)
T ss_pred ccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCC
Confidence 000 1122333778877 999999999999999964
No 313
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=33.29 E-value=2.5e+02 Score=25.46 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=54.6
Q ss_pred ccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCC---CCChhhHHHHHHHHHHHHH--HcCCCEEEeehhhHHhhcCCC
Q psy259 123 IKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGI---EIPPWKVFLAQKQMIAKCN--KVGKPVICATQMLESMIKKPR 197 (398)
Q Consensus 123 ~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~---e~~~~~v~~~qk~ii~~c~--~~gkpvi~ATQmLeSMi~~~~ 197 (398)
+.+..-+......+.+.++...+|.+.+..-+-|. ..+...+ ..-+++.+... ....|++++ ---.
T Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~-~~i~~~~~~~~~~~~~~pi~v~--------GGI~ 176 (211)
T cd00429 106 MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVL-EKIRKLRELIPENNLNLLIEVD--------GGIN 176 (211)
T ss_pred CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHH-HHHHHHHHHHHhcCCCeEEEEE--------CCCC
Confidence 33333343323456677777778988776433222 2222111 11122211211 124788764 1112
Q ss_pred CCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHH
Q psy259 198 ATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAM 236 (398)
Q Consensus 198 PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m 236 (398)
| .++..++.-|+|++..++.-..-..|.++++.+
T Consensus 177 ~-----env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 177 L-----ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred H-----HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 2 457888889999999988776777788777643
No 314
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=33.29 E-value=3.8e+02 Score=26.07 Aligned_cols=130 Identities=14% Similarity=0.129 Sum_probs=76.6
Q ss_pred cceeEEEeCCCCCC----------HHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcC
Q psy259 51 LTGIICTIGPASVA----------VDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQG 120 (398)
Q Consensus 51 ~t~Iictigp~~~~----------~e~l~~~i~~Gmnvr~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~ 120 (398)
+.++||-|=++|.+ +++-+.+.++|..--... ||-....+. ++|+..+|+. .
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvl-------te~~~f~g~-----~~~l~~v~~~--v---- 110 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVL-------TDERFFQGS-----LEYLRAARAA--V---- 110 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEe-------cccccCCCC-----HHHHHHHHHh--c----
Confidence 37899999777766 445555555563220000 100011111 6788999987 4
Q ss_pred CcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCC
Q psy259 121 KHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRAT 199 (398)
Q Consensus 121 ~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Pt 199 (398)
++.|+.|==-..-. .+++..+. +|+|.+-=.+|. . ..-+.+++.|+..|.-+++- .-+
T Consensus 111 -~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~l~----~----~~l~~li~~a~~lGl~~lve-----------vh~ 169 (260)
T PRK00278 111 -SLPVLRKDFIIDPY-QIYEARAAGADAILLIVAALD----D----EQLKELLDYAHSLGLDVLVE-----------VHD 169 (260)
T ss_pred -CCCEEeeeecCCHH-HHHHHHHcCCCEEEEEeccCC----H----HHHHHHHHHHHHcCCeEEEE-----------eCC
Confidence 46777531000011 24444444 899998866553 2 34567899999999998872 122
Q ss_pred chhhhhHHHHHHhCCcEEEecCc
Q psy259 200 RAEISDVANAVLDGADCVMLSGE 222 (398)
Q Consensus 200 raEvsDVanav~dG~D~vmLS~E 222 (398)
.+ |+..|...|+|.+.+++.
T Consensus 170 ~~---E~~~A~~~gadiIgin~r 189 (260)
T PRK00278 170 EE---ELERALKLGAPLIGINNR 189 (260)
T ss_pred HH---HHHHHHHcCCCEEEECCC
Confidence 22 345677889999998754
No 315
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=33.26 E-value=1.4e+02 Score=30.27 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=39.1
Q ss_pred HHhcHHHHHHh--cCeeEEcCCCCCCC----CChhhH----HHHHHHHHHHHHHc-CCCEEE-----eehhhHHhhc
Q psy259 134 GVKNLDEIIAE--ADGIMVARGDLGIE----IPPWKV----FLAQKQMIAKCNKV-GKPVIC-----ATQMLESMIK 194 (398)
Q Consensus 134 ~v~n~deIl~~--sDgimvaRgDLg~e----~~~~~v----~~~qk~ii~~c~~~-gkpvi~-----ATQmLeSMi~ 194 (398)
-++.++..++. +|+|.+. -|++-. ++++.. .-..|+|++..++. |+|+|. .+.+|+.|..
T Consensus 157 ~i~y~~~qiea~Gad~I~i~-Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e 232 (321)
T cd03309 157 KLKLYERRIKHLEPDLLVYH-DDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAE 232 (321)
T ss_pred HHHHHHHHHHHhCCCEEEEe-CCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHH
Confidence 45556666665 8999996 444444 665443 35568999999988 788876 3345555543
No 316
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.10 E-value=2.9e+02 Score=26.71 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=36.4
Q ss_pred cCeeEEcCCCCCCCC-ChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCcc
Q psy259 145 ADGIMVARGDLGIEI-PPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGET 223 (398)
Q Consensus 145 sDgimvaRgDLg~e~-~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ET 223 (398)
+|.+.+. ||.-.- ....-....+++. +..+.|+++ ....-+.+ |+......|+|.+.+..++
T Consensus 44 ~~~l~i~--Dl~~~~~~~~~n~~~i~~i~---~~~~~pv~~---------gGGi~s~~---d~~~l~~~G~~~vvigs~~ 106 (258)
T PRK01033 44 VDELIVL--DIDASKRGSEPNYELIENLA---SECFMPLCY---------GGGIKTLE---QAKKIFSLGVEKVSINTAA 106 (258)
T ss_pred CCEEEEE--ECCCCcCCCcccHHHHHHHH---HhCCCCEEE---------CCCCCCHH---HHHHHHHCCCCEEEEChHH
Confidence 6888887 775552 2222222333333 345789886 33333443 5666666799999998554
No 317
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.09 E-value=46 Score=29.94 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCcEEEEECCCchHHHHH-----HhhCCCCCEEEEeCCh
Q psy259 282 FAGAIVVLTTTGTSARLI-----SKYRPRCPIISVTRFP 315 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~i-----SkyRP~~PIIAVT~n~ 315 (398)
.-+.+|++|.||.|...+ +|-| .+|||++|.++
T Consensus 72 ~~Dv~I~iS~sG~t~~~i~~~~~ak~~-g~~ii~IT~~~ 109 (179)
T TIGR03127 72 KGDLLIAISGSGETESLVTVAKKAKEI-GATVAAITTNP 109 (179)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 447899999999988654 3444 69999999865
No 318
>KOG2335|consensus
Probab=32.99 E-value=54 Score=33.90 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=21.8
Q ss_pred ccEEE--eecChHHHhcHHHHHHh--cCeeEEcCCCC
Q psy259 123 IKIIA--KIENHQGVKNLDEIIAE--ADGIMVARGDL 155 (398)
Q Consensus 123 ~~iia--KIE~~~~v~n~deIl~~--sDgimvaRgDL 155 (398)
+.+|| -|.+. +..+.+++. +||||+|||-|
T Consensus 204 ipviaNGnI~~~---~d~~~~~~~tG~dGVM~arglL 237 (358)
T KOG2335|consen 204 IPVIANGNILSL---EDVERCLKYTGADGVMSARGLL 237 (358)
T ss_pred CcEEeeCCcCcH---HHHHHHHHHhCCceEEecchhh
Confidence 88888 45544 455566664 89999999966
No 319
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=32.98 E-value=1.2e+02 Score=30.90 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=41.6
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
+.+.+.++.|-+-.+... -+|++++++-.|.|+.+-.+ +.....+-+.|.+.|+|.+.+
T Consensus 89 l~~inp~v~v~~~~~~~~-~~~~~~~~~~~DlVid~~Dn----------~~~r~~ln~~~~~~~iP~i~~ 147 (339)
T PRK07688 89 LEEINSDVRVEAIVQDVT-AEELEELVTGVDLIIDATDN----------FETRFIVNDAAQKYGIPWIYG 147 (339)
T ss_pred HHHHCCCcEEEEEeccCC-HHHHHHHHcCCCEEEEcCCC----------HHHHHHHHHHHHHhCCCEEEE
Confidence 555566777666544432 36888888889988887332 235557888999999999975
No 320
>PLN02727 NAD kinase
Probab=32.83 E-value=43 Score=38.83 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=30.6
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTR 313 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~ 313 (398)
...++.+||-|.||.||..+|- -.|.++.|.+||
T Consensus 860 tyrgDGLIVSTPTGSTAYSLSAGGPIVhP~v~aIvITP 897 (986)
T PLN02727 860 KVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTP 897 (986)
T ss_pred EeecceEEEECCCchHHhHhhcCCceeCCCCCeEEEEe
Confidence 3578999999999999999997 668999999998
No 321
>PLN02826 dihydroorotate dehydrogenase
Probab=32.69 E-value=2.8e+02 Score=29.15 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=57.7
Q ss_pred CcccEEEeecChHHHhcHHHHHHh-----cCeeEEc-----C-CCCC-----CCC----ChhhHHHHHHHHHHHHHHc--
Q psy259 121 KHIKIIAKIENHQGVKNLDEIIAE-----ADGIMVA-----R-GDLG-----IEI----PPWKVFLAQKQMIAKCNKV-- 178 (398)
Q Consensus 121 ~~~~iiaKIE~~~~v~n~deIl~~-----sDgimva-----R-gDLg-----~e~----~~~~v~~~qk~ii~~c~~~-- 178 (398)
.++.|+.||---..-+.+++|++. +|||.+. | +|+- .+. +.+--+...+.+-...+..
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 358999999422222345555543 7999875 3 2221 111 1122233444443333444
Q ss_pred CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCC-CCChHHHHHHHHHHHHHHHh
Q psy259 179 GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAK-GDYPVECVRAMHNTCKEAEA 245 (398)
Q Consensus 179 gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~-G~yP~eaV~~m~~I~~~aE~ 245 (398)
..|+|-.+-+ = -..|+...+.-||++|.+-.---. | | ....+|.++.+.
T Consensus 341 ~ipIIgvGGI---------~---sg~Da~e~i~AGAs~VQv~Ta~~~~G--p----~~i~~I~~eL~~ 390 (409)
T PLN02826 341 KIPLVGCGGV---------S---SGEDAYKKIRAGASLVQLYTAFAYEG--P----ALIPRIKAELAA 390 (409)
T ss_pred CCcEEEECCC---------C---CHHHHHHHHHhCCCeeeecHHHHhcC--H----HHHHHHHHHHHH
Confidence 3577654322 1 246999999999999998421111 2 3 355666666654
No 322
>PRK08197 threonine synthase; Validated
Probab=32.58 E-value=3.4e+02 Score=27.98 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhh
Q psy259 268 HSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKY 302 (398)
Q Consensus 268 ~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSky 302 (398)
+-.+..++..|.+.+.+.|++.| ||+++.-+|.|
T Consensus 112 dRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~ 145 (394)
T PRK08197 112 ARGLAVGVSRAKELGVKHLAMPT-NGNAGAAWAAY 145 (394)
T ss_pred HhHHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHH
Confidence 33344445555555666555543 66666655543
No 323
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=32.40 E-value=2.6e+02 Score=28.24 Aligned_cols=98 Identities=21% Similarity=0.196 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCC---------------CChhhHH
Q psy259 103 YESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIE---------------IPPWKVF 165 (398)
Q Consensus 103 ~vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e---------------~~~~~v~ 165 (398)
|++.++++|+. + +++|+.|+=-..-..+.-..++. +|+|-|. |--|.. .-....-
T Consensus 167 ~le~i~~i~~~--~-----~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vs-g~gGt~~~~ie~~r~~~~~~~~~~~~~g 238 (333)
T TIGR02151 167 WLEKIAEICSQ--L-----SVPVIVKEVGFGISKEVAKLLADAGVSAIDVA-GAGGTSWAQVENYRAKGSNLASFFNDWG 238 (333)
T ss_pred HHHHHHHHHHh--c-----CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC-CCCCCcccchhhhcccccccchhhhccc
Q ss_pred HHHHHHHHHHHH--cCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 166 LAQKQMIAKCNK--VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 166 ~~qk~ii~~c~~--~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
......+..+++ ...|+|. ....-+.. |++.++..|||+|+++
T Consensus 239 ~~t~~~l~~~~~~~~~ipVIa---------sGGI~~~~---di~kaLalGAd~V~ig 283 (333)
T TIGR02151 239 IPTAASLLEVRSDAPDAPIIA---------SGGLRTGL---DVAKAIALGADAVGMA 283 (333)
T ss_pred HhHHHHHHHHHhcCCCCeEEE---------ECCCCCHH---HHHHHHHhCCCeehhh
No 324
>PLN02334 ribulose-phosphate 3-epimerase
Probab=32.36 E-value=4.3e+02 Score=24.87 Aligned_cols=116 Identities=12% Similarity=0.196 Sum_probs=60.6
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc--CCCEE
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV--GKPVI 183 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~--gkpvi 183 (398)
..+|++ . ..|..+.+...=.| -++.+.++++. +|.|.++.-.=|.. -++.+..--..+++.++. ++|+.
T Consensus 106 ~~~~~i--~-~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~~v~pg~~--~~~~~~~~~~~i~~~~~~~~~~~I~ 178 (229)
T PLN02334 106 RLIQQI--K-SAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVMSVEPGFG--GQSFIPSMMDKVRALRKKYPELDIE 178 (229)
T ss_pred HHHHHH--H-HCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEEEEEecCCC--ccccCHHHHHHHHHHHHhCCCCcEE
Confidence 445554 2 23444555543222 35567788888 99997753221111 011111111112223332 46765
Q ss_pred EeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHH
Q psy259 184 CATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 184 ~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~a 243 (398)
+.-- -|.. ++......|+|++...+.-..-.-|.++++.+.+.+.++
T Consensus 179 a~GG----------I~~e---~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 179 VDGG----------VGPS---TIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEKA 225 (229)
T ss_pred EeCC----------CCHH---HHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHh
Confidence 4211 1322 456667779999998765444457888888887765543
No 325
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=32.26 E-value=1.2e+02 Score=29.12 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=56.4
Q ss_pred eecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHH-------------HHHHHHHHcCCCEEEeehhhHHhhc
Q psy259 128 KIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQK-------------QMIAKCNKVGKPVICATQMLESMIK 194 (398)
Q Consensus 128 KIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk-------------~ii~~c~~~gkpvi~ATQmLeSMi~ 194 (398)
-.-++.+.+-|.++.+....++||-| .-+.++.+..++. ++++.|+.+|.|++
T Consensus 45 Tl~sp~a~e~I~~l~~~~p~~lIGAG---TVL~~~q~~~a~~aGa~fiVsP~~~~ev~~~a~~~~ip~~----------- 110 (211)
T COG0800 45 TLRTPAALEAIRALAKEFPEALIGAG---TVLNPEQARQAIAAGAQFIVSPGLNPEVAKAANRYGIPYI----------- 110 (211)
T ss_pred ecCCCCHHHHHHHHHHhCcccEEccc---cccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHhCCCccc-----------
Confidence 45678888888888888778888865 3345566655554 79999999999987
Q ss_pred CCCCCchhhhhHHHHHHhCCcEEEe
Q psy259 195 KPRATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 195 ~~~PtraEvsDVanav~dG~D~vmL 219 (398)
|--+=.|.+-.|...|++++=+
T Consensus 111 ---PG~~TptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 111 ---PGVATPTEIMAALELGASALKF 132 (211)
T ss_pred ---CCCCCHHHHHHHHHcChhheee
Confidence 4444445668999999999877
No 326
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=32.10 E-value=1.7e+02 Score=26.58 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=41.1
Q ss_pred hHHHhcHHHHHHh--cCeeEE--cCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 132 HQGVKNLDEIIAE--ADGIMV--ARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 132 ~~~v~n~deIl~~--sDgimv--aRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
..+++++++.+.. .|.|+| |=.|+.-.++.+++..-.+.|++.++..|..+++
T Consensus 57 ~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~il 113 (191)
T PRK10528 57 QQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLL 113 (191)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3677788887643 677555 5559877788899999999999999998877765
No 327
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=32.01 E-value=1.8e+02 Score=28.50 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=57.3
Q ss_pred HHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHH-HcCCCEEEeehhhHHhhcCCCCCchhh-hhHHHHHHhCC
Q psy259 138 LDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCN-KVGKPVICATQMLESMIKKPRATRAEI-SDVANAVLDGA 214 (398)
Q Consensus 138 ~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~-~~gkpvi~ATQmLeSMi~~~~PtraEv-sDVanav~dG~ 214 (398)
++.+-+. .|.|-|.-|-.|-. .. .--.+.+..+ +.|.|++. -+.+-.-+|.++ +++..+-..|.
T Consensus 21 ~~~l~~~~pd~isvT~~~~~~~--~~----~t~~~a~~l~~~~g~~~i~-------Hlt~r~~n~~~l~~~L~~~~~~Gi 87 (272)
T TIGR00676 21 VDRLSPLDPDFVSVTYGAGGST--RD----RTVRIVRRIKKETGIPTVP-------HLTCIGATREEIREILREYRELGI 87 (272)
T ss_pred HHHHhcCCCCEEEeccCCCCCc--HH----HHHHHHHHHHHhcCCCeeE-------EeeecCCCHHHHHHHHHHHHHCCC
Confidence 3444444 69999987766531 11 1113334444 56999986 223334467666 77888899999
Q ss_pred cEEE-ecCccC-------CCCChHHHHHHHHHHH
Q psy259 215 DCVM-LSGETA-------KGDYPVECVRAMHNTC 240 (398)
Q Consensus 215 D~vm-LS~ETA-------~G~yP~eaV~~m~~I~ 240 (398)
+-|+ |+|+.. .|.|+ .|+..++.|-
T Consensus 88 ~nvL~l~GD~~~~~~~~~~~~f~-~a~~Li~~i~ 120 (272)
T TIGR00676 88 RHILALRGDPPKGEGTPTPGGFN-YASELVEFIR 120 (272)
T ss_pred CEEEEeCCCCCCCCCCCCCCCCC-CHHHHHHHHH
Confidence 9988 888765 57777 6888777763
No 328
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.86 E-value=1.7e+02 Score=23.82 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHHHHhhchhcCCcccEE---EeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEE
Q psy259 107 VRLIEKLMATGEQGKHIKII---AKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVI 183 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~ii---aKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi 183 (398)
...+|++ +.+.|...... -+.+. .-.+|+.-+.-+|.|++--+ -+...-+ ..+-+.|++.|||++
T Consensus 12 ~~~~~~~--~~~~G~~~~~hg~~~~~~~--~~~~l~~~i~~aD~VIv~t~----~vsH~~~----~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 12 ERRYKRI--LEKYGGKLIHHGRDGGDEK--KASRLPSKIKKADLVIVFTD----YVSHNAM----WKVKKAAKKYGIPII 79 (97)
T ss_pred HHHHHHH--HHHcCCEEEEEecCCCCcc--chhHHHHhcCCCCEEEEEeC----CcChHHH----HHHHHHHHHcCCcEE
Confidence 5678888 88888777777 22222 22358888888999998644 3344443 345578999999999
Q ss_pred Ee
Q psy259 184 CA 185 (398)
Q Consensus 184 ~A 185 (398)
.+
T Consensus 80 ~~ 81 (97)
T PF10087_consen 80 YS 81 (97)
T ss_pred EE
Confidence 74
No 329
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=31.79 E-value=1.4e+02 Score=24.55 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=43.0
Q ss_pred HHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
+..++++ +.+.|-+..|.+ -.+..+++-..-.|.|+++ +.+...++++-+.+...++||.+
T Consensus 16 ~~ki~~~--~~~~~~~~~v~~-----~~~~~~~~~~~~~Diil~~----------Pqv~~~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 16 VKKMKKA--AEKRGIDAEIEA-----VPESELEEYIDDADVVLLG----------PQVRYMLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred HHHHHHH--HHHCCCceEEEE-----ecHHHHHHhcCCCCEEEEC----------hhHHHHHHHHHHHhccCCCcEEE
Confidence 3577777 777776654444 1344455555568988887 66777788888888899999986
No 330
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=31.79 E-value=1.3e+02 Score=27.11 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCC-CEEEEeCChhhhhhccccccceEEecCC
Q psy259 267 AHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRC-PIISVTRFPQVARQLHLHRSIIPLVYEE 334 (398)
Q Consensus 267 ~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~-PIIAVT~n~~taRqL~L~wGV~Pvl~~~ 334 (398)
.+.||..|++.-.+ +-.|.+ .+|.|+..++++=|.- ++-.||++..++..|.-.-++.-++...
T Consensus 6 K~~IA~~A~~~I~~---~~~Ifl-d~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~vi~~GG 70 (161)
T PF00455_consen 6 KRAIARKAASLIED---GDTIFL-DSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENPNIEVILLGG 70 (161)
T ss_pred HHHHHHHHHHhCCC---CCEEEE-ECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcCceEEEEeCC
Confidence 45677777766433 333333 7899999999987776 9999999999998887776666665543
No 331
>PRK07048 serine/threonine dehydratase; Validated
Probab=31.77 E-value=5.2e+02 Score=25.64 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+++- .|..+.-.-+...-..|++.+...+ +.-++.+...++.++ ...++
T Consensus 86 alA~~a~~~G~~~~vv-----------vp~~~~~~k~~~~~~~GAeV~~~~~------~~~~~~~~a~~l~~~--~g~~~ 146 (321)
T PRK07048 86 AIALSARLLGIPATIV-----------MPQDAPAAKVAATRGYGGEVVTYDR------YTEDREEIGRRLAEE--RGLTL 146 (321)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECC------CHHHHHHHHHHHHHh--cCCEE
Confidence 3556899999999884 2222212234555568999887753 233454443333322 11111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHHhh----CCCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLISKY----RPRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iSky----RP~~PIIAVT~n~ 315 (398)
..-|++ + +..+.-...+.++..++ ..+.||+..=+|.|..-++++ +|.+.|++|-+..
T Consensus 147 ~~~~~~-------~-~~~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~ 209 (321)
T PRK07048 147 IPPYDH-------P-HVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEA 209 (321)
T ss_pred ECCCCC-------c-chhhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 100110 0 11111122334555555 468999999999997666655 7999999999854
No 332
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.72 E-value=52 Score=35.90 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=30.0
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTR 313 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~ 313 (398)
...++.+|+-|.||.||..+|- ..|.++.+.+||
T Consensus 458 ~~~~DGlivsTptGSTaYslSAGGPiv~p~~~~~~~tP 495 (569)
T PRK14076 458 EVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVP 495 (569)
T ss_pred EEECCEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEe
Confidence 4578999999999999999997 567899999988
No 333
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=31.72 E-value=53 Score=29.19 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=25.7
Q ss_pred CCcEEEEECCCchHHHH-----HHhhCCCCCEEEEeCCh
Q psy259 282 FAGAIVVLTTTGTSARL-----ISKYRPRCPIISVTRFP 315 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~-----iSkyRP~~PIIAVT~n~ 315 (398)
.-+.+|++|.||.|... .+|-| .+|||++|.+.
T Consensus 79 ~~D~~i~iS~sG~t~~~~~~~~~a~~~-g~~ii~iT~~~ 116 (154)
T TIGR00441 79 KGDVLLGISTSGNSKNVLKAIEAAKDK-GMKTITLAGKD 116 (154)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 44789999999998754 34555 69999999854
No 334
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.70 E-value=3.7e+02 Score=26.19 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=47.7
Q ss_pred HHHHHhCCcEEEecCccC-CCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcE
Q psy259 207 ANAVLDGADCVMLSGETA-KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGA 285 (398)
Q Consensus 207 anav~dG~D~vmLS~ETA-~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~a 285 (398)
-.-+.+|||.+=+.+|.. -|.-|+..-..+.++....+... ..+ ..+...| +..-.+.+.|.+.+++.
T Consensus 30 ~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~---~~~-----~~plsiD---T~~~~vi~~al~~G~~i 98 (257)
T TIGR01496 30 ERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALR---DQP-----DVPISVD---TYRAEVARAALEAGADI 98 (257)
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH---hcC-----CCeEEEe---CCCHHHHHHHHHcCCCE
Confidence 344678999999988865 34333333333333333332210 000 1121122 22223444555557773
Q ss_pred EEEECCCch----HHHHHHhhCCCCCEEEEeCC
Q psy259 286 IVVLTTTGT----SARLISKYRPRCPIISVTRF 314 (398)
Q Consensus 286 IIv~T~SG~----tA~~iSkyRP~~PIIAVT~n 314 (398)
| -+-+|. ...++++| .+|+++...+
T Consensus 99 I--Nsis~~~~~~~~~l~~~~--~~~vV~m~~~ 127 (257)
T TIGR01496 99 I--NDVSGGQDPAMLEVAAEY--GVPLVLMHMR 127 (257)
T ss_pred E--EECCCCCCchhHHHHHHc--CCcEEEEeCC
Confidence 3 444453 77788887 4888886643
No 335
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=31.66 E-value=2.3e+02 Score=24.37 Aligned_cols=65 Identities=22% Similarity=0.349 Sum_probs=40.6
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..+++. +.+.+.++.+-+.-++... .+..+.+.-.|-|+.+-.+ +..+..+.+.|+++|+|++.+
T Consensus 56 ~~~~~~--l~~~~p~v~i~~~~~~~~~-~~~~~~~~~~diVi~~~d~----------~~~~~~l~~~~~~~~i~~i~~ 120 (143)
T cd01483 56 EVAARR--LNELNPGVNVTAVPEGISE-DNLDDFLDGVDLVIDAIDN----------IAVRRALNRACKELGIPVIDA 120 (143)
T ss_pred HHHHHH--HHHHCCCcEEEEEeeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 444555 5555555555443333221 2335666778888777332 356788999999999999974
No 336
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=31.24 E-value=4.9e+02 Score=25.17 Aligned_cols=107 Identities=10% Similarity=-0.070 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec------------CccCCCCCh
Q psy259 162 WKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS------------GETAKGDYP 229 (398)
Q Consensus 162 ~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS------------~ETA~G~yP 229 (398)
|......+.-+.++. .+.|+++- | ..-|..|...++.-+.+++|++=|. +-.+.++-|
T Consensus 51 e~~~~~i~~e~~~~~-~~~~vivn------v---~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp 120 (231)
T TIGR00736 51 EEFNSYIIEQIKKAE-SRALVSVN------V---RFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNK 120 (231)
T ss_pred ccHHHHHHHHHHHHh-hcCCEEEE------E---ecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCH
Confidence 334445555666665 45588872 2 2235668889999999999999984 223455667
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEEC
Q psy259 230 VECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLT 290 (398)
Q Consensus 230 ~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T 290 (398)
-...+++..+- +. ...++-.++ +. .+..+ ....++++.+.++++|.+-.
T Consensus 121 ~~l~~iv~av~---~~---~~PVsvKiR---~~-~~~~~--~~~~a~~l~~aGad~i~Vd~ 169 (231)
T TIGR00736 121 ELLKEFLTKMK---EL---NKPIFVKIR---GN-CIPLD--ELIDALNLVDDGFDGIHVDA 169 (231)
T ss_pred HHHHHHHHHHH---cC---CCcEEEEeC---CC-CCcch--HHHHHHHHHHcCCCEEEEee
Confidence 55555544443 11 111111111 11 11112 22344556788999998743
No 337
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=31.14 E-value=1.2e+02 Score=27.85 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=43.1
Q ss_pred eecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhH
Q psy259 128 KIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDV 206 (398)
Q Consensus 128 KIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDV 206 (398)
|+-++... .+++..+. +|.|.+-- +.+. ..-+++++.|++.|++++.+ | +.|.. -.+++
T Consensus 60 k~~d~~~~-~~~~~~~~Gad~i~vh~-----~~~~----~~~~~~i~~~~~~g~~~~~~------~---~~~~t-~~~~~ 119 (206)
T TIGR03128 60 KTMDAGEY-EAEQAFAAGADIVTVLG-----VADD----ATIKGAVKAAKKHGKEVQVD------L---INVKD-KVKRA 119 (206)
T ss_pred eeccchHH-HHHHHHHcCCCEEEEec-----cCCH----HHHHHHHHHHHHcCCEEEEE------e---cCCCC-hHHHH
Confidence 34444322 35665555 78776551 2222 22367888999999999973 1 11211 12455
Q ss_pred HHHHHhCCcEEEec
Q psy259 207 ANAVLDGADCVMLS 220 (398)
Q Consensus 207 anav~dG~D~vmLS 220 (398)
..+...|+|.|.+.
T Consensus 120 ~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 120 KELKELGADYIGVH 133 (206)
T ss_pred HHHHHcCCCEEEEc
Confidence 66766799998774
No 338
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=30.98 E-value=3.6e+02 Score=27.73 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=61.3
Q ss_pred hhhhHHHHHHhCCcEEEecCccCC-----CCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHH
Q psy259 202 EISDVANAVLDGADCVMLSGETAK-----GDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVE 276 (398)
Q Consensus 202 EvsDVanav~dG~D~vmLS~ETA~-----G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~ 276 (398)
...+..-|+.+|||+|.+++-.-. ..|+.+=++.+.+.+..+=+.++.. .+ .....+..+. ....+.
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~--~N-----~~~~~~~~~~-~~~~l~ 86 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVA--VN-----TLLHNDELET-LERYLD 86 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEE--ec-----cccccchhhH-HHHHHH
Confidence 467889999999999999744111 2466666554444444433322111 00 0001111222 345566
Q ss_pred HHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEEEe
Q psy259 277 AASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVT 312 (398)
Q Consensus 277 ~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIAVT 312 (398)
...+.+++++|+- +-....++++..|..||.+=|
T Consensus 87 ~l~e~GvDaviv~--Dpg~i~l~~e~~p~l~ih~S~ 120 (347)
T COG0826 87 RLVELGVDAVIVA--DPGLIMLARERGPDLPIHVST 120 (347)
T ss_pred HHHHcCCCEEEEc--CHHHHHHHHHhCCCCcEEEee
Confidence 7778899999874 445667888899999998655
No 339
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=30.93 E-value=5.2e+02 Score=25.33 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=57.3
Q ss_pred hHHHhc-HHHHHH-h-cCeeEEcCCCCC--CCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhH
Q psy259 132 HQGVKN-LDEIIA-E-ADGIMVARGDLG--IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDV 206 (398)
Q Consensus 132 ~~~v~n-~deIl~-~-sDgimvaRgDLg--~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDV 206 (398)
.+++++ ++-.++ . +|||+++ |--| ..+..++--.+.+..++.++ -..||++- -..++-.|+-..
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~-GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viag---------vg~~~t~~ai~~ 91 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVG-GSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQ---------VGSVNTAEAQEL 91 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEC-CCccccccCCHHHHHHHHHHHHHHhC-CCCCEEec---------CCCCCHHHHHHH
Confidence 345544 455555 4 8999987 4221 23334444444444555443 23577763 223343444333
Q ss_pred -HHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHh
Q psy259 207 -ANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEA 245 (398)
Q Consensus 207 -anav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~ 245 (398)
-.|..-|+|++|+..---...-+-+-++....++..+.-
T Consensus 92 a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~l 131 (293)
T PRK04147 92 AKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADN 131 (293)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCC
Confidence 455678999999986433332345667777777776543
No 340
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=30.87 E-value=1.6e+02 Score=30.39 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=81.1
Q ss_pred CHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHH
Q psy259 64 AVDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIA 143 (398)
Q Consensus 64 ~~e~l~~~i~~Gmnvr~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~ 143 (398)
+++.|++|-++|..+.+++-. + .++...++++ . ++.++.++|-|-= .---.+.++-+
T Consensus 36 tv~QI~~L~~aGceiVRvavp-----~-------------~~~A~al~~I---~-~~~~iPlVADIHF-d~~lAl~a~~~ 92 (346)
T TIGR00612 36 TVAQIRALEEAGCDIVRVTVP-----D-------------RESAAAFEAI---K-EGTNVPLVADIHF-DYRLAALAMAK 92 (346)
T ss_pred HHHHHHHHHHcCCCEEEEcCC-----C-------------HHHHHhHHHH---H-hCCCCCEEEeeCC-CcHHHHHHHHh
Confidence 356788888888766443221 0 1123334443 1 2457999998832 11122445555
Q ss_pred hcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee-------hhhHHhhcCCCCCchhh-----hhHHHHHH
Q psy259 144 EADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT-------QMLESMIKKPRATRAEI-----SDVANAVL 211 (398)
Q Consensus 144 ~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT-------QmLeSMi~~~~PtraEv-----sDVanav~ 211 (398)
-+|.|-|.||.+|- ..--+.++++|+++|+|+=+-. ++|+ +...||..=+ .-+.-.-.
T Consensus 93 g~dkiRINPGNig~-------~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~---kyg~~t~eamveSAl~~v~~le~ 162 (346)
T TIGR00612 93 GVAKVRINPGNIGF-------RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE---KYGDATAEAMVQSALEEAAILEK 162 (346)
T ss_pred ccCeEEECCCCCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH---HcCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999876 2345789999999999985532 2333 1222432111 22223334
Q ss_pred hCCcEEEecCccCCCCChHHHHHHHHHHHHH
Q psy259 212 DGADCVMLSGETAKGDYPVECVRAMHNTCKE 242 (398)
Q Consensus 212 dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~ 242 (398)
.|.+=+.+| .+...+..+++.-+.+.+.
T Consensus 163 ~~F~diviS---~KsSdv~~~i~ayr~la~~ 190 (346)
T TIGR00612 163 LGFRNVVLS---MKASDVAETVAAYRLLAER 190 (346)
T ss_pred CCCCcEEEE---EEcCCHHHHHHHHHHHHhh
Confidence 567777776 4455566666655555443
No 341
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=30.74 E-value=55 Score=29.56 Aligned_cols=33 Identities=12% Similarity=0.349 Sum_probs=25.3
Q ss_pred CCcEEEEECCCchHHHHHH-----hhCCCCCEEEEeCCh
Q psy259 282 FAGAIVVLTTTGTSARLIS-----KYRPRCPIISVTRFP 315 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~iS-----kyRP~~PIIAVT~n~ 315 (398)
.-+.+|++|.||.|...+. |.+ .+|||++|.+.
T Consensus 75 ~~D~vI~iS~sG~t~~~i~~~~~ak~~-g~~iI~IT~~~ 112 (179)
T cd05005 75 PGDLLIAISGSGETSSVVNAAEKAKKA-GAKVVLITSNP 112 (179)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 3468899999999986543 444 79999999864
No 342
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=30.66 E-value=5e+02 Score=25.12 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=54.8
Q ss_pred HHHHHHh-cCeeEEcCCCCC--CCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCC
Q psy259 138 LDEIIAE-ADGIMVARGDLG--IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGA 214 (398)
Q Consensus 138 ~deIl~~-sDgimvaRgDLg--~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~ 214 (398)
++-.++. +||+++. |--| ..+..++-..+.+...+.+. -..|+++.+ ....|+.=+.=.-.|..-|+
T Consensus 27 i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv--------~~~~~~~~~~~a~~a~~~G~ 96 (284)
T cd00950 27 IEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGT--------GSNNTAEAIELTKRAEKAGA 96 (284)
T ss_pred HHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEecc--------CCccHHHHHHHHHHHHHcCC
Confidence 4444444 8999988 5332 22233433333333333332 235776531 11222222233345566799
Q ss_pred cEEEecCccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 215 DCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 215 D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
|+||+..-.-...-+-+.+++.+.|+..+...
T Consensus 97 d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~p 128 (284)
T cd00950 97 DAALVVTPYYNKPSQEGLYAHFKAIAEATDLP 128 (284)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHhcCCCC
Confidence 99999876555445678888888888865543
No 343
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=30.60 E-value=48 Score=33.39 Aligned_cols=31 Identities=35% Similarity=0.567 Sum_probs=21.3
Q ss_pred cccEEE--eecChHHHhcHHHHHHh--cCeeEEcCCCC
Q psy259 122 HIKIIA--KIENHQGVKNLDEIIAE--ADGIMVARGDL 155 (398)
Q Consensus 122 ~~~iia--KIE~~~~v~n~deIl~~--sDgimvaRgDL 155 (398)
++.||+ -|.+++ ..+++++. +||||||||=|
T Consensus 194 ~iPVi~nGdI~t~~---da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 194 TIPVIANGEIWDWQ---SAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred CCcEEEeCCcCCHH---HHHHHHhccCCCEEEEcHHhH
Confidence 467776 566653 44555544 89999999955
No 344
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=30.33 E-value=2.5e+02 Score=28.67 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=72.9
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
|+..+|++ .+.|.......+|.+.+--+.--++-..+|.+++-=-|..+ ||.|.+. ...-.+..| ++|
T Consensus 83 di~~~~~~---~~~G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlI------A~l~~e~~k--liA 150 (376)
T COG1465 83 DIEALREL---MDRGHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLI------ADLQHEKVK--LIA 150 (376)
T ss_pred cHHHHHHh---hhcCcceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHH------HHhhccceE--EEE
Confidence 77888876 45678888999999987666666777778998887555543 6888752 111122223 222
Q ss_pred ehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHh
Q psy259 186 TQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEA 245 (398)
Q Consensus 186 TQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~ 245 (398)
..-+-.|.-=-.....-|+|+|.|+++ .| +-++-...+.+++|+
T Consensus 151 ----------~V~saeEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~ 194 (376)
T COG1465 151 ----------GVKSAEEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAES 194 (376)
T ss_pred ----------EeccHHHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhcc
Confidence 123334443345667789999999865 34 556777777777774
No 345
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=30.23 E-value=2.4e+02 Score=27.16 Aligned_cols=95 Identities=16% Similarity=0.239 Sum_probs=52.8
Q ss_pred CcccEEEeecCh--H--------HHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhh
Q psy259 121 KHIKIIAKIENH--Q--------GVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQML 189 (398)
Q Consensus 121 ~~~~iiaKIE~~--~--------~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmL 189 (398)
.+++++.+++.. . =+..+++.++. +|+|-+--- .+- .+..+....-+.+.+.|++.|.|+++- +
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~-~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~---~ 143 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN-VGS-DTEWEQIRDLGMIAEICDDWGVPLLAM---M 143 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe-cCC-chHHHHHHHHHHHHHHHHHcCCCEEEE---E
Confidence 456677777331 1 11346666666 676655321 121 123345567788999999999999981 1
Q ss_pred HHh-hcCCCCCchhhhh-HHHHHHhCCcEEEec
Q psy259 190 ESM-IKKPRATRAEISD-VANAVLDGADCVMLS 220 (398)
Q Consensus 190 eSM-i~~~~PtraEvsD-Vanav~dG~D~vmLS 220 (398)
+-. ++-+..+..++.. +..|...|+|.|-.+
T Consensus 144 ~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~ 176 (258)
T TIGR01949 144 YPRGPHIDDRDPELVAHAARLGAELGADIVKTP 176 (258)
T ss_pred eccCcccccccHHHHHHHHHHHHHHCCCEEecc
Confidence 100 0001111223444 355667899999986
No 346
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=29.72 E-value=6.2e+02 Score=25.86 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=73.0
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEE--cCCCCC----CCCChhhHHHHHHHHHHHHHHcCC
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMV--ARGDLG----IEIPPWKVFLAQKQMIAKCNKVGK 180 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimv--aRgDLg----~e~~~~~v~~~qk~ii~~c~~~gk 180 (398)
..+|.+ .+ .+.+..+.+-+-. -.+.++..++. .|.|.+ +=.|+- .-...+++...-...++.|++.|.
T Consensus 52 e~i~~i--~~-~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~ 126 (363)
T TIGR02090 52 EAIKKI--SQ-EGLNAEICSLARA--LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGL 126 (363)
T ss_pred HHHHHH--Hh-cCCCcEEEEEccc--CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 455555 22 2445666655431 12234444444 566655 222221 122345666677788999999999
Q ss_pred CEEEeehhhHHhhcCCCCCchhhhhHHHH-HHhCCcEEEecCccCCCCChHHHHHHHHHHHHH
Q psy259 181 PVICATQMLESMIKKPRATRAEISDVANA-VLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 242 (398)
Q Consensus 181 pvi~ATQmLeSMi~~~~PtraEvsDVana-v~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~ 242 (398)
.|.+.- ....+-+...+-+++.+ ...|+|.+.|. +|.=..+|.+.-+....+...
T Consensus 127 ~v~~~~------eda~r~~~~~l~~~~~~~~~~g~~~i~l~-DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 127 IVEFSA------EDATRTDIDFLIKVFKRAEEAGADRINIA-DTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred EEEEEE------eecCCCCHHHHHHHHHHHHhCCCCEEEEe-CCCCccCHHHHHHHHHHHhcc
Confidence 887642 23344455555555554 45699999997 677788999877777766543
No 347
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.68 E-value=4.3e+02 Score=26.57 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=50.4
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecC----------hHHHhcHHHHHHh-cCeeEEcCCCCCCCC-------ChhhHHHH
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIEN----------HQGVKNLDEIIAE-ADGIMVARGDLGIEI-------PPWKVFLA 167 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~----------~~~v~n~deIl~~-sDgimvaRgDLg~e~-------~~~~v~~~ 167 (398)
=|++||+. + |.+..|..||-- .++++-++.+-+. .|.|-|.-|-..-.. +...-...
T Consensus 205 iI~aIR~a--v---G~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 279 (338)
T cd04733 205 IYDAIRAA--V---GPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAY 279 (338)
T ss_pred HHHHHHHH--c---CCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchh
Confidence 45566666 4 567788888831 2233323333333 577777655321000 00000111
Q ss_pred HHHHHHHHH-HcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhC-CcEEEec
Q psy259 168 QKQMIAKCN-KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDG-ADCVMLS 220 (398)
Q Consensus 168 qk~ii~~c~-~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG-~D~vmLS 220 (398)
+....++.+ ..+.||++...+ - ...|...++.+| +|.|+++
T Consensus 280 ~~~~~~~ik~~v~iPVi~~G~i---------~---t~~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 280 FLEFAEKIRKVTKTPLMVTGGF---------R---TRAAMEQALASGAVDGIGLA 322 (338)
T ss_pred hHHHHHHHHHHcCCCEEEeCCC---------C---CHHHHHHHHHcCCCCeeeeC
Confidence 223333333 358999985432 1 224557888877 8999995
No 348
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=29.58 E-value=2.1e+02 Score=29.57 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=43.6
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..+++. |.+.+..+.|.+--++.+ -+|++++++-.|.|+-+-.+ +.....+-+.|.+.|||.+.+
T Consensus 99 ~~a~~~--l~~~np~v~i~~~~~~i~-~~~~~~~~~~~D~Vvd~~d~----------~~~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 99 QSARDS--IVEINPLVNVRLHEFRLD-PSNAVELFSQYDLILDGTDN----------FATRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred HHHHHH--HHHhCCCcEEEEEeccCC-hhHHHHHHhcCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 445555 566677777755433333 25778888889988876433 234556788999999998875
No 349
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=29.55 E-value=5.5e+02 Score=25.22 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=59.5
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc-CCCEEE
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV-GKPVIC 184 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~ 184 (398)
+..++.+. +.+.|-+...+..=.| ..+.+..|.+.++|.+-.=+-.|+.=-...++.-.+.++++.+++ ++|+.+
T Consensus 132 e~~~~~~~--~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 132 ESDYLISV--CNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred HHHHHHHH--HHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 66666666 6666654333333333 467899999999966543112232211234555556677776654 788876
Q ss_pred eehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 185 ATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 185 ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
-=..=+.. |+......|||++...
T Consensus 208 ---------GFGI~~~e---~~~~~~~~GADGvVVG 231 (263)
T CHL00200 208 ---------GFGISTSE---QIKQIKGWNINGIVIG 231 (263)
T ss_pred ---------ECCcCCHH---HHHHHHhcCCCEEEEC
Confidence 33333333 5677777799999884
No 350
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=29.54 E-value=4.2e+02 Score=24.98 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHH
Q psy259 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 244 (398)
Q Consensus 165 ~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE 244 (398)
+.+.+.|-..|++++.++.+ ..=|--...|+..|+..|+|++++ +.+..+ +.+.++..+
T Consensus 46 ~~~~~~i~~l~~~~~~~~~i-----------GaGTV~~~~~~~~a~~aGA~fivs------p~~~~~----v~~~~~~~~ 104 (206)
T PRK09140 46 PDPFDSIAALVKALGDRALI-----------GAGTVLSPEQVDRLADAGGRLIVT------PNTDPE----VIRRAVALG 104 (206)
T ss_pred ccHHHHHHHHHHHcCCCcEE-----------eEEecCCHHHHHHHHHcCCCEEEC------CCCCHH----HHHHHHHCC
Q ss_pred hhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhC----CCCCEEEE
Q psy259 245 AAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYR----PRCPIISV 311 (398)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyR----P~~PIIAV 311 (398)
..+ .+...++.| +..|.+.+++.|-+|-.+......+...+ |.+|++++
T Consensus 105 ~~~------------~~G~~t~~E------~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvvai 157 (206)
T PRK09140 105 MVV------------MPGVATPTE------AFAALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPVFAV 157 (206)
T ss_pred CcE------------EcccCCHHH------HHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEEEE
No 351
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.31 E-value=3.6e+02 Score=28.63 Aligned_cols=63 Identities=24% Similarity=0.179 Sum_probs=39.3
Q ss_pred cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc--------CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcE
Q psy259 145 ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV--------GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADC 216 (398)
Q Consensus 145 sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~--------gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~ 216 (398)
+|.|.+. .|=|=+.+.......--.|.+.+.+. ..|||.|--+ -| -.+++-|...|||+
T Consensus 178 aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI---------~t---g~~vaAA~alGAd~ 244 (418)
T cd04742 178 ADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGI---------GT---PEAAAAAFALGADF 244 (418)
T ss_pred CCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCC---------CC---HHHHHHHHHcCCcE
Confidence 6888888 77776665322222222233333222 4899987443 22 34789999999999
Q ss_pred EEec
Q psy259 217 VMLS 220 (398)
Q Consensus 217 vmLS 220 (398)
|.+.
T Consensus 245 V~~G 248 (418)
T cd04742 245 IVTG 248 (418)
T ss_pred Eeec
Confidence 9983
No 352
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=29.24 E-value=38 Score=33.31 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=28.9
Q ss_pred hcCCcEEEEECCCchHHHHHHh----hCCCCCEEEEeC
Q psy259 280 KVFAGAIVVLTTTGTSARLISK----YRPRCPIISVTR 313 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSk----yRP~~PIIAVT~ 313 (398)
...++.+|+.|.+|.||..+|. ..|..+.+.+||
T Consensus 188 ~~~~dGlivsTptGSTay~lSaGGpiv~p~~~~~~~tp 225 (285)
T PF01513_consen 188 TYRGDGLIVSTPTGSTAYSLSAGGPIVHPGLDVIILTP 225 (285)
T ss_dssp EEEESEEEEEETGGGGTHHHHTT--EE-TTSSEEEEEE
T ss_pred EEEEeeeEEEecCCceEEEEecCccEeccCcceeEEEe
Confidence 4578999999999999999997 668888888876
No 353
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=29.23 E-value=5.9e+02 Score=25.40 Aligned_cols=129 Identities=18% Similarity=0.127 Sum_probs=65.5
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCch---hhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRA---EISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAA 246 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptra---EvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 246 (398)
-+...|+..|.++++- |-....+... .-......-..|+..+...++ .+..++ +...+++....
T Consensus 80 alA~~a~~~G~~~~i~------vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~----~~~~~~---~~~~a~~l~~~ 146 (331)
T PRK03910 80 QTAAAAAKLGLKCVLL------LENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG----TDMDAQ---LEELAEELRAQ 146 (331)
T ss_pred HHHHHHHHhCCcEEEE------EcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc----chHHHH---HHHHHHHHHHc
Confidence 3556789999999984 1111111110 012334566789998888654 233222 22222222221
Q ss_pred hhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-----CCcEEEEECCCchHHHHHH----hhCCCCCEEEEeCCh
Q psy259 247 IWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-----FAGAIVVLTTTGTSARLIS----KYRPRCPIISVTRFP 315 (398)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-----~A~aIIv~T~SG~tA~~iS----kyRP~~PIIAVT~n~ 315 (398)
... .++. ..+ ...+.. .+....-+.++..++ ..+.||+..=+|.|+.-++ .++|+++|++|-+..
T Consensus 147 ~~~-~~~~-~~~-~~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~ 220 (331)
T PRK03910 147 GRR-PYVI-PVG-GSNALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSR 220 (331)
T ss_pred CCc-eEEE-CCC-CCCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 100 0000 000 000111 111112344555544 3789999999999985544 467999999999843
No 354
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=29.19 E-value=1.1e+02 Score=29.94 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=35.2
Q ss_pred HHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 134 GVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 134 ~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
..+-.+|+.+.+|++.|.=|-| .++-....+...+.+++.|||++.
T Consensus 39 ~~~E~~e~~~~a~al~iNiGTl-----~~~~~~~m~~A~~~A~~~~~PvVL 84 (246)
T PF02110_consen 39 APEEVEEFASIADALVINIGTL-----TDERIEAMKKAAKAANELGIPVVL 84 (246)
T ss_dssp STTTHHHHHHCTSEEEEESTTS-----SHHHHHHHHHHHHHHHHTT--EEE
T ss_pred CHHHHHHHHHHcCEEEEECCCC-----CHhHHHHHHHHHHHHHHcCCCEEE
Confidence 3456889999999999987744 455567777888999999999997
No 355
>TIGR00035 asp_race aspartate racemase.
Probab=29.15 E-value=3.3e+02 Score=25.66 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhh---------hHHHHHHhh-cC-CCCCChHHHHHHHHHHHHHhcCCcEEEEECCCch
Q psy259 226 GDYPVECVRAMHNTCKEAEAAIWH---------TKLLTELKS-ML-PLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGT 294 (398)
Q Consensus 226 G~yP~eaV~~m~~I~~~aE~~~~~---------~~~~~~~~~-~~-~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~SG~ 294 (398)
|.=|.-++.++++|.+.+.+.... ...+.+... .. ....++...+..+ ++.-.+.++++|++..+|-.
T Consensus 9 Gmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~-~~~L~~~g~d~iviaCNTah 87 (229)
T TIGR00035 9 GMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDI-AVKLENAGADFIIMPCNTAH 87 (229)
T ss_pred CcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHH-HHHHHHcCCCEEEECCccHH
Confidence 445899999999999887653211 111211111 11 1122344444444 44445679999999888765
Q ss_pred HH-HHHHhhCCCCCEEEEeC
Q psy259 295 SA-RLISKYRPRCPIISVTR 313 (398)
Q Consensus 295 tA-~~iSkyRP~~PIIAVT~ 313 (398)
.. ..+... -+.||+.+..
T Consensus 88 ~~~~~l~~~-~~iPii~i~~ 106 (229)
T TIGR00035 88 KFAEDIQKA-IGIPLISMIE 106 (229)
T ss_pred HHHHHHHHh-CCCCEechHH
Confidence 53 344432 2588887543
No 356
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.14 E-value=56 Score=27.66 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=26.3
Q ss_pred CCcEEEEECCCchHHHHH-----HhhCCCCCEEEEeCChh
Q psy259 282 FAGAIVVLTTTGTSARLI-----SKYRPRCPIISVTRFPQ 316 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~i-----SkyRP~~PIIAVT~n~~ 316 (398)
.-+.+|++|.||.|...+ +|-+ .+|||++|.++.
T Consensus 47 ~~dl~I~iS~SG~t~~~~~~~~~a~~~-g~~vi~iT~~~~ 85 (120)
T cd05710 47 EKSVVILASHSGNTKETVAAAKFAKEK-GATVIGLTDDED 85 (120)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHc-CCeEEEEECCCC
Confidence 447899999999987543 3444 699999998764
No 357
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.98 E-value=2e+02 Score=26.50 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=42.2
Q ss_pred CcccHHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHH
Q psy259 100 PNLYESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNK 177 (398)
Q Consensus 100 ~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~ 177 (398)
+-.|..=+..+++. +.+.|.++.+..-=...+-.+.+++++.. .|||++...+. + ..+++.+.+
T Consensus 16 ~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~----~--------~~~~~~~~~ 81 (270)
T cd06294 16 NPFFIEVLRGISAV--ANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRE----D--------DPIIDYLKE 81 (270)
T ss_pred CCCHHHHHHHHHHH--HHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcC----C--------cHHHHHHHh
Confidence 34443334566666 66667666543322223344566665543 79999974332 1 124567788
Q ss_pred cCCCEEEe
Q psy259 178 VGKPVICA 185 (398)
Q Consensus 178 ~gkpvi~A 185 (398)
.|.|+++.
T Consensus 82 ~~ipvV~~ 89 (270)
T cd06294 82 EKFPFVVI 89 (270)
T ss_pred cCCCEEEE
Confidence 99999985
No 358
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=28.97 E-value=4.3e+02 Score=27.45 Aligned_cols=161 Identities=22% Similarity=0.286 Sum_probs=90.8
Q ss_pred HHHHHHHhhchhcCCcccEEE---eecChHHH----hcHHHHHHh-c-CeeEEcCCCCCCCCCh----------------
Q psy259 107 VRLIEKLMATGEQGKHIKIIA---KIENHQGV----KNLDEIIAE-A-DGIMVARGDLGIEIPP---------------- 161 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iia---KIE~~~~v----~n~deIl~~-s-DgimvaRgDLg~e~~~---------------- 161 (398)
=++|+++ |..+++...+|+ -||++++. +.+.++-+. + +.++|=|+.+ |=|-
T Consensus 39 R~~I~~I--l~g~d~rllvIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~--eKPRTt~gWKGli~DP~ldg 114 (348)
T PRK12756 39 RRRIEKI--LNGEDPRLLVIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYF--EKPRTVVGWKGLISDPDLDG 114 (348)
T ss_pred HHHHHHH--hcCCCCceEEEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEecc--ccCCCCcccccccCCCCCCC
Confidence 3678888 876667777877 78888887 344444332 3 4455777755 2231
Q ss_pred -----hhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhh-hhHHHHHHhCCcEEEecCccCCCCChHHHHHH
Q psy259 162 -----WKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEI-SDVANAVLDGADCVMLSGETAKGDYPVECVRA 235 (398)
Q Consensus 162 -----~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEv-sDVanav~dG~D~vmLS~ETA~G~yP~eaV~~ 235 (398)
+-+..+-+.+++ .++.|.|+. |.||+-+ -++. +|+-....-||.
T Consensus 115 sf~i~~GL~~~R~ll~~-i~~~GlP~a--tE~ld~~-------~~qY~~DliSwgaIGAR-------------------- 164 (348)
T PRK12756 115 SYRVNHGLELARKLLLQ-INELGLPTA--TEFLDMV-------TGQYIADLISWGAIGAR-------------------- 164 (348)
T ss_pred CccHHHHHHHHHHHHHH-HHHcCCcee--ehhcccc-------cHHHHHHHHhhhhhccc--------------------
Confidence 333344444444 478999975 6777642 1122 444333222332
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhh--cCCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCCCEEE
Q psy259 236 MHNTCKEAEAAIWHTKLLTELKS--MLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIIS 310 (398)
Q Consensus 236 m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~PIIA 310 (398)
.+|... ++++-..+.. ..+.+.+..-.+|..|+.+|.. ....+-.+..|++|..-++=-|.|.||-
T Consensus 165 ------t~esq~-hre~ASgls~PVgfKN~t~g~i~~aidAi~aa~~--~H~Fl~~~~~G~~aiv~T~GN~~~HvIL 232 (348)
T PRK12756 165 ------TTESQI-HREMASALSCPVGFKNGTDGNTRIAIDAIRAARA--SHMFLSPDKDGQMTIYQTSGNPYGHIIM 232 (348)
T ss_pred ------cccCHH-HHHHHhcCCCceEecCCCCCCHHHHHHHHHHHhC--CCeeEeeCCCCcEEEEEcCCCCCeEEEe
Confidence 222221 2222121111 0123445556778888888864 4567888899988877777778887764
No 359
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=28.86 E-value=1.6e+02 Score=34.00 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhchhcCC------cccEEEeecChHHHhcHHHHHHh-----------cC-----eeEEcCCCCCCCCCh
Q psy259 104 ESNVRLIEKLMATGEQGK------HIKIIAKIENHQGVKNLDEIIAE-----------AD-----GIMVARGDLGIEIPP 161 (398)
Q Consensus 104 vddV~~ir~~~~l~~~~~------~~~iiaKIE~~~~v~n~deIl~~-----------sD-----gimvaRgDLg~e~~~ 161 (398)
+.||.++-=+ |++.|- .+.|+.-.||.+-++|-..|+.. .+ -||+|=.|=.=+=|.
T Consensus 497 ~SDvLev~lL--lKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~ 574 (910)
T COG2352 497 VSDVLEVLLL--LKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGY 574 (910)
T ss_pred HHHHHHHHHH--HHHhCCCCccCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccch
Confidence 4499999888 888774 49999999999999999998874 12 377776654444333
Q ss_pred ----hhHHHHHHHHHHHHHHcCCCEE
Q psy259 162 ----WKVFLAQKQMIAKCNKVGKPVI 183 (398)
Q Consensus 162 ----~~v~~~qk~ii~~c~~~gkpvi 183 (398)
-.+..+|+.+++.|+++|.-.=
T Consensus 575 laa~Wa~y~Aq~aLv~~~~~~gV~Lr 600 (910)
T COG2352 575 LAANWALYKAQLALVELCEKAGVELR 600 (910)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCceEE
Confidence 5678999999999999987543
No 360
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.82 E-value=1.2e+02 Score=28.63 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=44.0
Q ss_pred CCcccHHHHHHHHHHhhchhcCCcccEEE-eecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q psy259 99 EPNLYESNVRLIEKLMATGEQGKHIKIIA-KIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCN 176 (398)
Q Consensus 99 ~~~~~vddV~~ir~~~~l~~~~~~~~iia-KIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~ 176 (398)
.+-.|..=+..+.+. +.+.|.++.+.. .-+...-.+.++.++.. .|||++...|.. .-..+++++.
T Consensus 10 ~~~f~~~~~~gi~~~--~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~----------~~~~~i~~~~ 77 (272)
T cd06313 10 QATWCAQGKQAADEA--GKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIG----------TLTEAVQKAI 77 (272)
T ss_pred CChHHHHHHHHHHHH--HHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChH----------HhHHHHHHHH
Confidence 333443333445555 566666655543 22223344667777666 899999754321 1123467788
Q ss_pred HcCCCEEEee
Q psy259 177 KVGKPVICAT 186 (398)
Q Consensus 177 ~~gkpvi~AT 186 (398)
++|.|+++..
T Consensus 78 ~~~iPvV~~~ 87 (272)
T cd06313 78 ARGIPVIDMG 87 (272)
T ss_pred HCCCcEEEeC
Confidence 8999999853
No 361
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=28.74 E-value=3.6e+02 Score=25.68 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=58.1
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHH--HhcCeeEEcCCCCCCCCChhhHHH---HHHHHHHHHHHc-C-CCEEEeehh
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEII--AEADGIMVARGDLGIEIPPWKVFL---AQKQMIAKCNKV-G-KPVICATQM 188 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl--~~sDgimvaRgDLg~e~~~~~v~~---~qk~ii~~c~~~-g-kpvi~ATQm 188 (398)
+.+.|..+.|--.-++ .++.+.+++ ...|.|++ ++++.|...... .-.++ ++.++. + ..+.+
T Consensus 110 ik~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~----m~v~pG~~gq~~~~~~~~ki-~~~~~~~~~~~I~V---- 178 (228)
T PTZ00170 110 IREAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV----MTVEPGFGGQSFMHDMMPKV-RELRKRYPHLNIQV---- 178 (228)
T ss_pred HHHCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh----hhcccCCCCcEecHHHHHHH-HHHHHhcccCeEEE----
Confidence 4555665655555444 688888998 67898875 566654421110 01111 111222 1 22222
Q ss_pred hHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHH
Q psy259 189 LESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 242 (398)
Q Consensus 189 LeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~ 242 (398)
.+-=+.. .+..++..|+|.+.+.+---....|.++++.+.+..++
T Consensus 179 ------dGGI~~~---ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 179 ------DGGINLE---TIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQK 223 (228)
T ss_pred ------CCCCCHH---HHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHH
Confidence 1222222 44677778999998854333345699998888766543
No 362
>PRK08223 hypothetical protein; Validated
Probab=28.72 E-value=1.8e+02 Score=29.25 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=42.7
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..+++. +.+.+.++.|.+-=|.. .-+|++++++-.|.|+=+- +-+. +..-..+-+.|.++|||++.+
T Consensus 84 e~a~~~--l~~iNP~v~V~~~~~~l-~~~n~~~ll~~~DlVvD~~-----D~~~---~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 84 EVLAEM--VRDINPELEIRAFPEGI-GKENADAFLDGVDVYVDGL-----DFFE---FDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHHHH--HHHHCCCCEEEEEeccc-CccCHHHHHhCCCEEEECC-----CCCc---HHHHHHHHHHHHHcCCCEEEE
Confidence 444555 55567777766533322 2368999999999886221 1110 123456778999999999986
No 363
>PRK07877 hypothetical protein; Provisional
Probab=28.49 E-value=1.4e+02 Score=33.77 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=48.4
Q ss_pred HHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
+..+++. +.+.+.++.|.+.-+... -+|++++++-.|.|+=+-.++ ..--.+-+.|.++|+|+|.++
T Consensus 162 v~~a~~~--l~~inp~i~v~~~~~~i~-~~n~~~~l~~~DlVvD~~D~~----------~~R~~ln~~a~~~~iP~i~~~ 228 (722)
T PRK07877 162 AVVAARR--IAELDPYLPVEVFTDGLT-EDNVDAFLDGLDVVVEECDSL----------DVKVLLREAARARRIPVLMAT 228 (722)
T ss_pred HHHHHHH--HHHHCCCCEEEEEeccCC-HHHHHHHhcCCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEEc
Confidence 3445555 666678888888777665 379999998888887664332 122256688999999999988
No 364
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=28.48 E-value=2.6e+02 Score=27.16 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=53.7
Q ss_pred HHHHhhchhcCC-cccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 110 IEKLMATGEQGK-HIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 110 ir~~~~l~~~~~-~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
+|+. |.. |+ -..+..++=++..+ |++.. .|.|+|.= |=+.......+. ++..|+..|..+++
T Consensus 3 lk~~--l~~-g~~~~g~~~~~~~p~~~----e~~~~~g~D~v~iDl-----EH~~~~~~~~~~-~~~a~~~~g~~~~V-- 67 (249)
T TIGR02311 3 FKQA--LKE-GQPQIGLWLGLADPYAA----EICAGAGFDWLLIDG-----EHAPNDVRTILS-QLQALAPYPSSPVV-- 67 (249)
T ss_pred HHHH--HHC-CCceEEEEEeCCCcHHH----HHHHhcCCCEEEEec-----cCCCCCHHHHHH-HHHHHHhcCCCcEE--
Confidence 4555 543 33 24456666666443 34443 79999863 222223333444 77888888988887
Q ss_pred hhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 187 QMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 187 QmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
.=|.+ +-.|+..++.-|+|+||+-
T Consensus 68 -------Rv~~~---~~~~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 68 -------RPAIG---DPVLIKQLLDIGAQTLLVP 91 (249)
T ss_pred -------ECCCC---CHHHHHHHhCCCCCEEEec
Confidence 32333 3348999999999999994
No 365
>PRK06260 threonine synthase; Validated
Probab=28.33 E-value=4.8e+02 Score=26.91 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=17.6
Q ss_pred HHHHHHhcCCcEEEEECCCchHHHHHHhh--CCCCCEEEEeC
Q psy259 274 AVEAASKVFAGAIVVLTTTGTSARLISKY--RPRCPIISVTR 313 (398)
Q Consensus 274 av~~A~~~~A~aIIv~T~SG~tA~~iSky--RP~~PIIAVT~ 313 (398)
++..+.+.+++.|++ ..||.++.-+|.| +...|.+.|.+
T Consensus 106 ~v~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~vP 146 (397)
T PRK06260 106 GVTKALELGVKTVAC-ASTGNTSASLAAYAARAGLKCYVLLP 146 (397)
T ss_pred HHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEEe
Confidence 344444445444333 3455555544433 23445555554
No 366
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=28.17 E-value=67 Score=30.37 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=38.8
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCC-------C-CCh-----hhHHHHHHHHHHHHHHcCCCE
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGI-------E-IPP-----WKVFLAQKQMIAKCNKVGKPV 182 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~-------e-~~~-----~~v~~~qk~ii~~c~~~gkpv 182 (398)
+...|..+.+|.-.+ ..+.++++++..||+++.=|.-=+ + .+. ..-......+++.|.+.+||+
T Consensus 33 i~~aG~~pv~ip~~~---~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~Pi 109 (217)
T PF07722_consen 33 IEAAGGRPVPIPYDA---DDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPI 109 (217)
T ss_dssp HHHTT-EEEEE-SS-----HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--E
T ss_pred HHHcCCEEEEEccCC---CHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCE
Confidence 344566666665444 456789999999999998664211 1 011 233466778899999999998
Q ss_pred EEee
Q psy259 183 ICAT 186 (398)
Q Consensus 183 i~AT 186 (398)
.--.
T Consensus 110 lGIC 113 (217)
T PF07722_consen 110 LGIC 113 (217)
T ss_dssp EEET
T ss_pred EEEc
Confidence 7544
No 367
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=28.17 E-value=5.7e+02 Score=24.89 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=78.1
Q ss_pred eEEEeCCCCCCHHHHHHHHHhc-ccccc---cCCCC---CCCCC--CC---CC----CCCCCCcccHHHHHHHHHHhhch
Q psy259 54 IICTIGPASVAVDMLEKIIETE-SNSDE---CSEKP---RECPS--EP---EP----PHCKEPNLYESNVRLIEKLMATG 117 (398)
Q Consensus 54 Iictigp~~~~~e~l~~~i~~G-mnvr~---~~~~~---~pgp~--~~---~~----~k~~~~~~~vddV~~ir~~~~l~ 117 (398)
|+-.-||.+ +.+.+.++.+.| .-.-. .+..+ .|.|. +. +. .....---|+ +++++. ..
T Consensus 13 ~~~aag~~~-~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~---~~~~~~--~~ 86 (296)
T cd04740 13 VILASGTFG-FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFL---EELLPW--LR 86 (296)
T ss_pred CEECCCCCC-CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHH---HHHHHH--hh
Confidence 444468887 889999999987 44311 22223 22331 11 00 0000001222 334443 22
Q ss_pred hcCCcccEEEee--cChHHHhcHHHHHHh--cCeeEEcCC-----CCCCCCChhhHHHHHHHHHHHHHHc-CCCEEEeeh
Q psy259 118 EQGKHIKIIAKI--ENHQGVKNLDEIIAE--ADGIMVARG-----DLGIEIPPWKVFLAQKQMIAKCNKV-GKPVICATQ 187 (398)
Q Consensus 118 ~~~~~~~iiaKI--E~~~~v~n~deIl~~--sDgimvaRg-----DLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~ATQ 187 (398)
+ .+.++++.| .+.+...+.-+.++. .|+|=+-=+ ..|-++. .-+..-.++++.+++. ++||++
T Consensus 87 ~--~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~v--- 159 (296)
T cd04740 87 E--FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIV--- 159 (296)
T ss_pred c--CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEE---
Confidence 1 245677776 445554444444433 688866311 0011111 1124446677777776 899997
Q ss_pred hhHHhhcCCCCCchhhhhHHH-HHHhCCcEEEecCc
Q psy259 188 MLESMIKKPRATRAEISDVAN-AVLDGADCVMLSGE 222 (398)
Q Consensus 188 mLeSMi~~~~PtraEvsDVan-av~dG~D~vmLS~E 222 (398)
+ -.|+..|..+++. +...|+|++.+++=
T Consensus 160 ------K-l~~~~~~~~~~a~~~~~~G~d~i~~~nt 188 (296)
T cd04740 160 ------K-LTPNVTDIVEIARAAEEAGADGLTLINT 188 (296)
T ss_pred ------E-eCCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 2 2466567778776 45579999988653
No 368
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=28.16 E-value=1.6e+02 Score=27.26 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=40.5
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHH----HHHHHHHHHHHcCCC
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFL----AQKQMIAKCNKVGKP 181 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~----~qk~ii~~c~~~gkp 181 (398)
++..++++ +...|.++.++...+. +...|+|++.=|- +. ...+.. -.+..|+...+.|||
T Consensus 11 N~~~l~~~--~~~~G~~~~~~~~~~~----------~~~~d~lilpGg~---~~-~~~~~~~~~~~~~~~i~~~~~~g~p 74 (194)
T cd01750 11 NFTDLDPL--AREPGVDVRYVEVPEG----------LGDADLIILPGSK---DT-IQDLAWLRKRGLAEAIKNYARAGGP 74 (194)
T ss_pred CHHHHHHH--HhcCCceEEEEeCCCC----------CCCCCEEEECCCc---ch-HHHHHHHHHcCHHHHHHHHHHCCCc
Confidence 56677777 7777888888887665 3557999987443 12 233322 134456666688999
Q ss_pred EEE
Q psy259 182 VIC 184 (398)
Q Consensus 182 vi~ 184 (398)
++-
T Consensus 75 vlg 77 (194)
T cd01750 75 VLG 77 (194)
T ss_pred EEE
Confidence 864
No 369
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=28.15 E-value=1.7e+02 Score=24.75 Aligned_cols=44 Identities=23% Similarity=0.192 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCcEEEEECCC---------c-hHHHHHHh-hCCCCCEEEEeC
Q psy259 270 VAIAAVEAASKVFAGAIVVLTTT---------G-TSARLISK-YRPRCPIISVTR 313 (398)
Q Consensus 270 ia~aav~~A~~~~A~aIIv~T~S---------G-~tA~~iSk-yRP~~PIIAVT~ 313 (398)
.+...++.|.+.+++.||+-+.. | .++..+.+ -+|.||++.|.+
T Consensus 91 ~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 91 VAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeC
Confidence 45556778888999988887641 2 24444433 334599999865
No 370
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.14 E-value=2.3e+02 Score=27.79 Aligned_cols=71 Identities=23% Similarity=0.162 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHH-hCCcEEEecCccCCCCChHHHHHHHHHHHHHH
Q psy259 168 QKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 168 qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~-dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~a 243 (398)
-+..++.+++.|+-|.++ .+|...++.+..++-+++..+. .|+|.|.|. +|.=...|.+.-+..+.+.+..
T Consensus 120 ~~~~i~~ak~~G~~v~~~----i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 120 LEVAIKAVKKAGKHVEGA----ICYTGSPVHTLEYYVKLAKELEDMGADSICIK-DMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred HHHHHHHHHHCCCeEEEE----EEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhC
Confidence 345678889999877642 1333457777788877776654 499999997 7888888998887777776543
No 371
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=27.73 E-value=4.4e+02 Score=26.08 Aligned_cols=62 Identities=10% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCcEEEEECCCchHHHHHHhh--CCCCCEEEEeCChh--hhh-hccccccceEEecC
Q psy259 271 AIAAVEAASKVFAGAIVVLTTTGTSARLISKY--RPRCPIISVTRFPQ--VAR-QLHLHRSIIPLVYE 333 (398)
Q Consensus 271 a~aav~~A~~~~A~aIIv~T~SG~tA~~iSky--RP~~PIIAVT~n~~--taR-qL~L~wGV~Pvl~~ 333 (398)
+..++..+.+.+...||+. +||.+++-+|.+ +...|.+.+.+... ..+ .+....|..-+.++
T Consensus 59 a~~~l~~a~~~g~~~vv~a-SsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~ 125 (328)
T TIGR00260 59 MAVALTKALELGNDTVLCA-STGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAID 125 (328)
T ss_pred HHHHHHHHHHcCCCEEEEe-CCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEec
Confidence 4455555555565656554 588888776643 34677777777642 112 22235677776665
No 372
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=27.33 E-value=1.1e+02 Score=29.70 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCC-CCEEEEeCChhhhhhccccccceEEecCC
Q psy259 267 AHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPR-CPIISVTRFPQVARQLHLHRSIIPLVYEE 334 (398)
Q Consensus 267 ~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~-~PIIAVT~n~~taRqL~L~wGV~Pvl~~~ 334 (398)
...||..|+++-. +-+.| |=.+|.|...++++-|. .++-.||++..++..|.-.-++.-++...
T Consensus 79 K~~IA~~Aa~lI~--~g~tI--flD~GtT~~~la~~L~~~~~ltvvTnsl~i~~~l~~~~~~~villGG 143 (252)
T PRK10681 79 KRRAAQLAATLVE--PNQTL--FFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGG 143 (252)
T ss_pred HHHHHHHHHhhcC--CCCEE--EEECCccHHHHHHhcCCCCCeEEEECCHHHHHHHhhCCCCEEEEECc
Confidence 4677777776643 33433 34799999999999986 48999999999998887667766555443
No 373
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.20 E-value=1.6e+02 Score=30.70 Aligned_cols=79 Identities=18% Similarity=0.355 Sum_probs=57.0
Q ss_pred HHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEE
Q psy259 138 LDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCV 217 (398)
Q Consensus 138 ~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~v 217 (398)
-.++|+-.|.+++.=-|.|+-+ -.-...-..+.++|.++||||+| ...|-|--. ..+|+-
T Consensus 72 t~~mL~~vDvlvfDiQDvG~R~--YTYi~Tl~~~MeAaa~~g~~vvV--------LDRPNPl~G----------~~veGp 131 (365)
T PF07075_consen 72 TPEMLKGVDVLVFDIQDVGVRF--YTYISTLYYVMEAAAENGKPVVV--------LDRPNPLGG----------RYVEGP 131 (365)
T ss_pred CHHHHhCCCEEEEeCccCCchH--HHHHHHHHHHHHHHHHhCCeEEE--------EeCCCCCCC----------CccccC
Confidence 4677788999999988887652 33344556788999999999998 466777432 245666
Q ss_pred EecC--ccCCCCChHHHHHHH
Q psy259 218 MLSG--ETAKGDYPVECVRAM 236 (398)
Q Consensus 218 mLS~--ETA~G~yP~eaV~~m 236 (398)
+|-. ++-+|.||+-...=|
T Consensus 132 ~l~~~~~SFvG~~~iP~rHGm 152 (365)
T PF07075_consen 132 ILDPEFRSFVGMYPIPIRHGM 152 (365)
T ss_pred CcCcccccccCCCccccccCC
Confidence 6654 788999998766543
No 374
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=27.11 E-value=80 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEec
Q psy259 348 VAHGIKYGRDRKFLNQGDPVIVVTG 372 (398)
Q Consensus 348 I~~ai~~ake~Glik~GD~VVVvsG 372 (398)
+-.++..+.+.|.+++||.|++++.
T Consensus 53 ~~~~L~~~~~~g~~~~Gd~vl~~~~ 77 (90)
T PF08541_consen 53 IPINLADALEEGRIKPGDRVLLVGF 77 (90)
T ss_dssp HHHHHHHHHHTTSSCTTEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEEE
Confidence 4457788999999999999988754
No 375
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=27.00 E-value=4.9e+02 Score=23.81 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=54.6
Q ss_pred cEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCC--hhhHHHHHHHHHHHHHHcCC-CEE-EeehhhHHhhcCCCCC
Q psy259 124 KIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIP--PWKVFLAQKQMIAKCNKVGK-PVI-CATQMLESMIKKPRAT 199 (398)
Q Consensus 124 ~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~--~~~v~~~qk~ii~~c~~~gk-pvi-~ATQmLeSMi~~~~Pt 199 (398)
.+..-+......+.+.++...+|.|.+..-+-|..-. .+......+++.+.+...+. |++ ++ ---.|
T Consensus 111 ~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~--------GGI~~- 181 (220)
T PRK05581 111 KAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVD--------GGINA- 181 (220)
T ss_pred EEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE--------CCCCH-
Confidence 3333443233466778888889988776322222211 12222333334344444333 333 32 11222
Q ss_pred chhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHH
Q psy259 200 RAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNT 239 (398)
Q Consensus 200 raEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I 239 (398)
.++..+...|+|++...+.--.=.-|.++++.+.++
T Consensus 182 ----~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 182 ----DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred ----HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 255666668999999976655445688887766554
No 376
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=26.98 E-value=64 Score=27.86 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=40.3
Q ss_pred cCCcEEEE-ECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEe
Q psy259 281 VFAGAIVV-LTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLV 331 (398)
Q Consensus 281 ~~A~aIIv-~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl 331 (398)
+.+.+++- -...|.+-..+.|-.|++.|+.+++.-.+.+.|.=.||-+|.+
T Consensus 55 ~k~A~lv~v~~~~~~aI~~lrkIHPPAHIiVis~~~~~y~eL~~~~~~~p~l 106 (107)
T PF04009_consen 55 CKAAALVKVEEDATKAIDRLRKIHPPAHIIVISPRHDVYEELLEMFGKLPEL 106 (107)
T ss_pred cchheEEEecCCchhHHHHHhhcCCCceEEEECCCchHHHHHHHHhhhCccC
Confidence 34444443 3456667778999999999999999999999999999888754
No 377
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=26.95 E-value=5.7e+02 Score=26.30 Aligned_cols=122 Identities=12% Similarity=0.108 Sum_probs=69.6
Q ss_pred HHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhh
Q psy259 171 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 250 (398)
Q Consensus 171 ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 250 (398)
+...|+..|-++.+. .|..+...-+...-..||+.+.... ..|.. .+++...+++++ +...++.
T Consensus 126 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~lr~~GA~Vi~~~~--~~~~~--~~~~~a~~l~~~-~~~~~~~ 189 (368)
T PLN02556 126 LAFMAAMKGYKMILT-----------MPSYTSLERRVTMRAFGAELVLTDP--TKGMG--GTVKKAYELLES-TPDAFML 189 (368)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEECC--CCCcc--HHHHHHHHHHHh-cCCCCcc
Confidence 456789999999984 4555555566777778999887642 22321 233333333322 1011110
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCchHHHHHH----hhCCCCCEEEEeCCh
Q psy259 251 KLLTELKSMLPLPIDSAHSVAIAAVEAASKV--FAGAIVVLTTTGTSARLIS----KYRPRCPIISVTRFP 315 (398)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~--~A~aIIv~T~SG~tA~~iS----kyRP~~PIIAVT~n~ 315 (398)
.-|++ +....--....+.++..+. ..++||+-.=||.|+.-++ .+.|.+.|++|-+..
T Consensus 190 ~q~~n-------p~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~ 253 (368)
T PLN02556 190 QQFSN-------PANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAE 253 (368)
T ss_pred CCCCC-------HHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 00110 1111101123345555554 4799999999999875444 457999999999855
No 378
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.94 E-value=3.1e+02 Score=21.43 Aligned_cols=62 Identities=23% Similarity=0.150 Sum_probs=41.1
Q ss_pred HHHHHHhcCCcEEEEEC--C--Cch-HHHHHHhhCCCCCEEEEeCChhh-hhhccccccceEEecCCC
Q psy259 274 AVEAASKVFAGAIVVLT--T--TGT-SARLISKYRPRCPIISVTRFPQV-ARQLHLHRSIIPLVYEEP 335 (398)
Q Consensus 274 av~~A~~~~A~aIIv~T--~--SG~-tA~~iSkyRP~~PIIAVT~n~~t-aRqL~L~wGV~Pvl~~~~ 335 (398)
+.+...+...+.|++=- . +|. .++.+.+..|.+||+++|.+... ..+-.+-.|+.-++..+.
T Consensus 35 ~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 35 ALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp HHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred HHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 33444566677776542 2 222 25677777799999999976653 344456889998888764
No 379
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.80 E-value=1.1e+02 Score=27.95 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=39.3
Q ss_pred hHHHhcHH-HHHHhc--CeeEE--cCCCCCCCC--------ChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 132 HQGVKNLD-EIIAEA--DGIMV--ARGDLGIEI--------PPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 132 ~~~v~n~d-eIl~~s--Dgimv--aRgDLg~e~--------~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
...+++++ ++++.. |.|+| |=.|+.... +.+++...-+.|+++|++.|.++++.|
T Consensus 59 ~~~l~r~~~~v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t 126 (204)
T cd01830 59 PSALARFDRDVLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIGAT 126 (204)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEec
Confidence 35677775 444443 44444 445876543 778888889999999999999998754
No 380
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=26.71 E-value=1.8e+02 Score=29.98 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=43.4
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..+++. |.+.+.++.|.+.-+... -+|++++++-.|-|+-+-.+ +.....+-+.|.++|+|.+.+
T Consensus 98 ~~~~~~--l~~~np~v~i~~~~~~i~-~~~~~~~~~~~DlVid~~Dn----------~~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 98 EVAAER--LKEIQPDIRVNALRERLT-AENAVELLNGVDLVLDGSDS----------FATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHHHH--HHHHCCCCeeEEeeeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 444444 555566666655433332 35788999889988876333 234556778899999999976
No 381
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=26.69 E-value=40 Score=32.21 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=42.5
Q ss_pred CeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccC-
Q psy259 146 DGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA- 224 (398)
Q Consensus 146 DgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA- 224 (398)
|-=||.+||+-+-+.-.-=-.---.++..|++.|-++|. |+.||.-+-|..+|+. +.+.++|-
T Consensus 80 dlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~lia-------iT~~~~SsLak~aDvv---------l~ip~~~e~ 143 (202)
T COG0794 80 DLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIA-------ITSNPDSSLAKAADVV---------LVIPVKTEA 143 (202)
T ss_pred CccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEE-------EeCCCCChHHHhcCeE---------EEccCcccc
Confidence 334455555544444321122345688999999999997 7788888877666653 34455443
Q ss_pred --CCCChH
Q psy259 225 --KGDYPV 230 (398)
Q Consensus 225 --~G~yP~ 230 (398)
.|.||.
T Consensus 144 ~p~~l~pt 151 (202)
T COG0794 144 CPLGLAPT 151 (202)
T ss_pred CcccCCcc
Confidence 566774
No 382
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.58 E-value=2.6e+02 Score=25.87 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHhhchhcCCcccEEEeecChH-HHhcHHHHHH-hcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcC
Q psy259 102 LYESNVRLIEKLMATGEQGKHIKIIAKIENHQ-GVKNLDEIIA-EADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVG 179 (398)
Q Consensus 102 ~~vddV~~ir~~~~l~~~~~~~~iiaKIE~~~-~v~n~deIl~-~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~g 179 (398)
.|..-+..+.+. +.+.|-++.++.--++++ -.+.+...+. -.|||++...+. + ....+++.+.+.|
T Consensus 13 ~~~~~~~~i~~~--~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~----~------~~~~~l~~~~~~~ 80 (277)
T cd06319 13 FWQIMGRGVKSK--AKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNS----S------AAVTLLKLAAQAK 80 (277)
T ss_pred HHHHHHHHHHHH--HHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCch----h------hhHHHHHHHHHCC
Confidence 343334555555 666666665554333332 3445555544 389999874431 1 2234567788899
Q ss_pred CCEEEe
Q psy259 180 KPVICA 185 (398)
Q Consensus 180 kpvi~A 185 (398)
+|+++.
T Consensus 81 ipvV~~ 86 (277)
T cd06319 81 IPVVIA 86 (277)
T ss_pred CCEEEE
Confidence 999974
No 383
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=26.57 E-value=7.4e+02 Score=25.69 Aligned_cols=94 Identities=21% Similarity=0.175 Sum_probs=54.5
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCC-----------CCChhhHHHHHHHHH
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGI-----------EIPPWKVFLAQKQMI 172 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~-----------e~~~~~v~~~qk~ii 172 (398)
-|.++|+. ..+.+|+.|+=..-..+.+...++. +|+|.|.=++=|. .+|.. ....++.
T Consensus 204 ~I~~lr~~------~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~---~~L~~v~ 274 (392)
T cd02808 204 LIEDLREA------TGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTE---LGLARAH 274 (392)
T ss_pred HHHHHHHh------CCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHH---HHHHHHH
Confidence 45555555 3337888888543233444455544 6999997544222 23322 2333444
Q ss_pred HHHHHc----CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 173 AKCNKV----GKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 173 ~~c~~~----gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
+.+.+. ..|+|.+.-+- --.||+.|+..|||+|.+.
T Consensus 275 ~~~~~~~~~~~i~viasGGI~------------~g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 275 QALVKNGLRDRVSLIASGGLR------------TGADVAKALALGADAVGIG 314 (392)
T ss_pred HHHHHcCCCCCCeEEEECCCC------------CHHHHHHHHHcCCCeeeec
Confidence 444443 36777643321 1359999999999999885
No 384
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=26.54 E-value=2.2e+02 Score=27.85 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=40.4
Q ss_pred cCCcccEEEeec---ChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc-CCCEEE
Q psy259 119 QGKHIKIIAKIE---NHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV-GKPVIC 184 (398)
Q Consensus 119 ~~~~~~iiaKIE---~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~-gkpvi~ 184 (398)
.+.++.||+-+- +.++++.....-+. +|++|+.+-... ....+.+...-+.|.+ +. +.|+++
T Consensus 67 ~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~-~~~~~~i~~~~~~v~~---a~~~lpi~i 133 (288)
T cd00954 67 AKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYY-KFSFEEIKDYYREIIA---AAASLPMII 133 (288)
T ss_pred hCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC-CCCHHHHHHHHHHHHH---hcCCCCEEE
Confidence 345789999774 44556655555555 899998665432 2345667666666654 45 789987
No 385
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=26.52 E-value=6.4e+02 Score=24.94 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=48.7
Q ss_pred HHHHHh-cCeeEEcCCCCC--CCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHH-HhCC
Q psy259 139 DEIIAE-ADGIMVARGDLG--IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAV-LDGA 214 (398)
Q Consensus 139 deIl~~-sDgimvaRgDLg--~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav-~dG~ 214 (398)
+-.++. +|||++. |=-| ..+..++=....+...+.+ .-..|||+-+ . . +-.|.-+.+... .-|+
T Consensus 35 ~~l~~~Gv~Gi~~~-GstGE~~~Lt~eEr~~~~~~~~~~~-~~~~pvi~gv--------~-~-~t~~~i~~~~~a~~~Ga 102 (303)
T PRK03620 35 EWLAPYGAAALFAA-GGTGEFFSLTPDEYSQVVRAAVETT-AGRVPVIAGA--------G-G-GTAQAIEYAQAAERAGA 102 (303)
T ss_pred HHHHHcCCCEEEEC-cCCcCcccCCHHHHHHHHHHHHHHh-CCCCcEEEec--------C-C-CHHHHHHHHHHHHHhCC
Confidence 333444 8999986 3211 2223333222222233322 2246888632 1 1 224555555544 4499
Q ss_pred cEEEecCccCCCCChHHHHHHHHHHHHHHHh
Q psy259 215 DCVMLSGETAKGDYPVECVRAMHNTCKEAEA 245 (398)
Q Consensus 215 D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~ 245 (398)
|++|+..=.-...-+-+.+.....|+..++-
T Consensus 103 dav~~~pP~y~~~~~~~i~~~f~~va~~~~l 133 (303)
T PRK03620 103 DGILLLPPYLTEAPQEGLAAHVEAVCKSTDL 133 (303)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 9999965432222245667777777776543
No 386
>PRK08198 threonine dehydratase; Provisional
Probab=26.20 E-value=7.2e+02 Score=25.47 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+.+- .|...-..-+...-..||+.+.. ++ .| -++++...+++++ +..++.
T Consensus 84 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~Vi~~-~~----~~-~~~~~~a~~~~~~-~g~~~~ 145 (404)
T PRK08198 84 GVAYAASLLGIKATIV-----------MPETAPLSKVKATRSYGAEVVLH-GD----VY-DEALAKAQELAEE-TGATFV 145 (404)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEE-CC----CH-HHHHHHHHHHHHh-cCCEec
Confidence 3556799999999984 23322233355666789998765 32 23 4666665555543 221111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHH----HHhhCCCCCEEEEeCChh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARL----ISKYRPRCPIISVTRFPQ 316 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~----iSkyRP~~PIIAVT~n~~ 316 (398)
.+ |++ + ...+.-...+.++..++ +.++||+..-+|.+..- +-.+.|.+.||+|-+...
T Consensus 146 ~~-~~~-------~-~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~ 208 (404)
T PRK08198 146 HP-FDD-------P-DVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGA 208 (404)
T ss_pred CC-CCC-------c-cHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 11 111 1 12222233455665655 46889999989987654 445689999999998553
No 387
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.16 E-value=77 Score=31.98 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=33.1
Q ss_pred HHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhh
Q psy259 138 LDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMI 193 (398)
Q Consensus 138 ~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi 193 (398)
++..++. .+||.|+=--.| .+|. .....++++.+.|+||+++||-..--+
T Consensus 228 l~~~~~~~~~GlVl~~~G~G-n~p~-----~~~~~l~~a~~~gipVV~~sq~~~G~v 278 (323)
T smart00870 228 LDALLDSGAKGLVLEGTGAG-NVPP-----DLLEALKEALERGIPVVRTSRCLNGRV 278 (323)
T ss_pred HHHHHhCCCCEEEEEeeCCC-CCCH-----HHHHHHHHHHHCCCEEEEeccCCCcee
Confidence 4555554 699998722222 3343 355667788899999999999766543
No 388
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=26.06 E-value=2.6e+02 Score=26.12 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHH-HHH-hcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcC
Q psy259 102 LYESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDE-IIA-EADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVG 179 (398)
Q Consensus 102 ~~vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~de-Il~-~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~g 179 (398)
.|.+=+..+.+. +.+.|.++.+..-=+..+-.+.+.. +.. -.|||++...++. . ..+.++++.|
T Consensus 13 ~~~~~~~~i~~~--~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~-----~-------~~~~~l~~~~ 78 (269)
T cd06297 13 FYRRLLEGIEGA--LLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDLT-----E-------RLAERRLPTE 78 (269)
T ss_pred hHHHHHHHHHHH--HHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccC-----h-------HHHHHHhhcC
Confidence 333334566666 6667766666542222222233433 222 2899999976542 1 2456678899
Q ss_pred CCEEEe
Q psy259 180 KPVICA 185 (398)
Q Consensus 180 kpvi~A 185 (398)
.|+++-
T Consensus 79 iPvv~~ 84 (269)
T cd06297 79 RPVVLV 84 (269)
T ss_pred CCEEEE
Confidence 999975
No 389
>PRK14851 hypothetical protein; Provisional
Probab=25.93 E-value=1.8e+02 Score=32.60 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=40.6
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
+.+-+..+.|.+--+... -+|++++++-.|.|+=+- |. . -+.+...+.+.|.+.|+|+|.++
T Consensus 106 l~~inP~~~I~~~~~~i~-~~n~~~~l~~~DvVid~~-D~----~---~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 106 ALSINPFLEITPFPAGIN-ADNMDAFLDGVDVVLDGL-DF----F---QFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred HHHhCCCCeEEEEecCCC-hHHHHHHHhCCCEEEECC-CC----C---cHHHHHHHHHHHHHCCCCEEEee
Confidence 444466666665333322 368999999999877442 21 1 12344568889999999999886
No 390
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=25.79 E-value=2.6e+02 Score=26.71 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCchhhhhHHHHHHhCCcEEEecCccCC--CCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHH
Q psy259 198 ATRAEISDVANAVLDGADCVMLSGETAK--GDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAV 275 (398)
Q Consensus 198 PtraEvsDVanav~dG~D~vmLS~ETA~--G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav 275 (398)
||..-+..+..|+.+|||.|-+----.. +..--+..+.+..|+..+. ....+-.++ .....+ +.+. .++
T Consensus 68 ~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~-g~~lKvIlE-----~~~L~~--~ei~-~a~ 138 (211)
T TIGR00126 68 TTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACA-GVLLKVIIE-----TGLLTD--EEIR-KAC 138 (211)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcC-CCeEEEEEe-----cCCCCH--HHHH-HHH
Q ss_pred HHHHhcCCcEEEEECCCchH---------HHHHHhhCCCCCEEE
Q psy259 276 EAASKVFAGAIVVLTTTGTS---------ARLISKYRPRCPIIS 310 (398)
Q Consensus 276 ~~A~~~~A~aIIv~T~SG~t---------A~~iSkyRP~~PIIA 310 (398)
+++.+.+|+ ++=|.||.. ..+..-.+.++||-+
T Consensus 139 ~ia~eaGAD--fvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKa 180 (211)
T TIGR00126 139 EICIDAGAD--FVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKA 180 (211)
T ss_pred HHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEE
No 391
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=25.68 E-value=2.8e+02 Score=26.33 Aligned_cols=94 Identities=27% Similarity=0.388 Sum_probs=58.0
Q ss_pred HcCCCEEEeehhhHHhhcCCCCC-----chhh----hhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhh
Q psy259 177 KVGKPVICATQMLESMIKKPRAT-----RAEI----SDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAI 247 (398)
Q Consensus 177 ~~gkpvi~ATQmLeSMi~~~~Pt-----raEv----sDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~ 247 (398)
....|+.+ ||. ||.- ..|+ .|+..+..-|+|++.+..=|..|..-.++.+.+-..+...+-.
T Consensus 48 ~~~ipv~v-------MIR-pr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~t- 118 (201)
T PF03932_consen 48 AVDIPVHV-------MIR-PRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVT- 118 (201)
T ss_dssp HTTSEEEE-------E---SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEE-
T ss_pred hcCCceEE-------EEC-CCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEE-
Confidence 78999998 776 5553 3444 8999999999999999999999999888887777776644433
Q ss_pred hhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCch
Q psy259 248 WHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGT 294 (398)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~SG~ 294 (398)
+|+ -|+.. + ++. .|.+...+++.+.| +|..|.
T Consensus 119 FHR-AfD~~----~---d~~-----~al~~L~~lG~~rV--LTSGg~ 150 (201)
T PF03932_consen 119 FHR-AFDEV----P---DPE-----EALEQLIELGFDRV--LTSGGA 150 (201)
T ss_dssp E-G-GGGGS----S---THH-----HHHHHHHHHT-SEE--EESTTS
T ss_pred EeC-cHHHh----C---CHH-----HHHHHHHhcCCCEE--ECCCCC
Confidence 233 23322 1 222 34555566788865 565443
No 392
>KOG2683|consensus
Probab=25.40 E-value=1.8e+02 Score=28.92 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=40.5
Q ss_pred ChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchh
Q psy259 131 NHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAE 202 (398)
Q Consensus 131 ~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraE 202 (398)
+.+-++-.-+-+..+||+++= |..+ +..-==+++..++..+||+.+ .|--||||+
T Consensus 233 n~dkv~~~~~~v~e~dg~Lvl----GsSL----~v~Sg~r~i~~a~~~k~pi~I---------vNIGpTRaD 287 (305)
T KOG2683|consen 233 NKDKVTFCMEKVKECDGFLVL----GSSL----MVLSGFRFIRHAHEKKKPIAI---------VNIGPTRAD 287 (305)
T ss_pred ChHHHHHHHHHHhccCceEEe----chhH----HHHHHHHHHHHHHhhcCcEEE---------EecCCcchh
Confidence 566777778888889999974 3322 112223578899999999996 899999993
No 393
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=25.37 E-value=64 Score=26.72 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=24.8
Q ss_pred CCcEEEEECCCchHHHHHHhh----CCCCCEEEEeCCh
Q psy259 282 FAGAIVVLTTTGTSARLISKY----RPRCPIISVTRFP 315 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~iSky----RP~~PIIAVT~n~ 315 (398)
.-+.+|+++.+|.+...+... +-.+|+|++|.+.
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESST
T ss_pred ccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCC
Confidence 347899999999998654321 2369999999653
No 394
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=25.33 E-value=3.5e+02 Score=25.25 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=43.5
Q ss_pred cCeeEEcCCCCCCCC-ChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCcc
Q psy259 145 ADGIMVARGDLGIEI-PPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGET 223 (398)
Q Consensus 145 sDgimvaRgDLg~e~-~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ET 223 (398)
+|.+.|. ||.--. +...-....+.+. +..+.|+.+. .-.. ...|+..+..-|+|.+++..+.
T Consensus 42 ~~~l~v~--dl~~~~~g~~~~~~~i~~i~---~~~~~pi~~g----------gGI~--~~ed~~~~~~~Ga~~vvlgs~~ 104 (230)
T TIGR00007 42 AERIHVV--DLDGAKEGGPVNLPVIKKIV---RETGVPVQVG----------GGIR--SLEDVEKLLDLGVDRVIIGTAA 104 (230)
T ss_pred CCEEEEE--eCCccccCCCCcHHHHHHHH---HhcCCCEEEe----------CCcC--CHHHHHHHHHcCCCEEEEChHH
Confidence 6888886 664432 3222223333333 3447899873 2222 3468888888999999986544
Q ss_pred CCCCChHHHHHHHHHHHHHH
Q psy259 224 AKGDYPVECVRAMHNTCKEA 243 (398)
Q Consensus 224 A~G~yP~eaV~~m~~I~~~a 243 (398)
- +-.+.+.+++++.
T Consensus 105 l------~d~~~~~~~~~~~ 118 (230)
T TIGR00007 105 V------ENPDLVKELLKEY 118 (230)
T ss_pred h------hCHHHHHHHHHHh
Confidence 3 2234455555443
No 395
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.30 E-value=6.1e+02 Score=24.31 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHH
Q psy259 167 AQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRA 235 (398)
Q Consensus 167 ~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~ 235 (398)
..+.+++.++++|++|++-|+ ++. .-...+....+..|+|++.- +||-.++++
T Consensus 211 ~~~~~v~~~~~~Gl~v~~wT~--~~~-------~n~~~~~~~l~~~GvdgiiT-------D~p~~~~~~ 263 (265)
T cd08564 211 WTEEFVKKAHENGLKVMTYFD--EPV-------NDNEEDYKVYLELGVDCICP-------NDPVLLVNF 263 (265)
T ss_pred hhHHHHHHHHHcCCEEEEecC--CCC-------CCCHHHHHHHHHcCCCEEEc-------CCHHHHHHh
Confidence 467889999999999999872 111 11133456677889999765 688766554
No 396
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=25.22 E-value=2.7e+02 Score=28.05 Aligned_cols=81 Identities=25% Similarity=0.274 Sum_probs=46.9
Q ss_pred cccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCC-h-hhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCC
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIP-P-WKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRA 198 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~-~-~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~P 198 (398)
.+++|.++-+.+... ..++. +|+|++-=.+=|=+.+ . +..+....++.+ ...+|||.|--+-
T Consensus 136 gi~v~~~v~s~~~A~---~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~---~~~iPViaAGGI~--------- 200 (330)
T PF03060_consen 136 GIKVIPQVTSVREAR---KAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRD---AVDIPVIAAGGIA--------- 200 (330)
T ss_dssp T-EEEEEESSHHHHH---HHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHH---H-SS-EEEESS-----------
T ss_pred CCccccccCCHHHHH---HhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhh---hcCCcEEEecCcC---------
Confidence 589999998766544 34444 8998876334444444 1 224444444444 3349999985543
Q ss_pred CchhhhhHHHHHHhCCcEEEec
Q psy259 199 TRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 199 traEvsDVanav~dG~D~vmLS 220 (398)
.-.|++.|...|||+|.+.
T Consensus 201 ---dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 201 ---DGRGIAAALALGADGVQMG 219 (330)
T ss_dssp ---SHHHHHHHHHCT-SEEEES
T ss_pred ---CHHHHHHHHHcCCCEeecC
Confidence 2458899999999999994
No 397
>PRK09389 (R)-citramalate synthase; Provisional
Probab=25.04 E-value=8.8e+02 Score=26.04 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=73.8
Q ss_pred HHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh-cCeeEE--cCCCCC----CCCChhhHHHHHHHHHHHHHHcCC
Q psy259 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE-ADGIMV--ARGDLG----IEIPPWKVFLAQKQMIAKCNKVGK 180 (398)
Q Consensus 108 ~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~-sDgimv--aRgDLg----~e~~~~~v~~~qk~ii~~c~~~gk 180 (398)
..+|.+ .+ .+.+..|.+-.-.. .+.++..++. .|.|.+ +-.|+- .....+++...-...++.|++.|.
T Consensus 54 e~v~~i--~~-~~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~ 128 (488)
T PRK09389 54 EAIKAV--TD-EGLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGL 128 (488)
T ss_pred HHHHHH--Hh-cCCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 555555 22 23345666655432 2335555554 555433 333331 122345666666778899999998
Q ss_pred CEEEeehhhHHhhcCCCCCchhhhhHHHHHH-hCCcEEEecCccCCCCChHHHHHHHHHHHH
Q psy259 181 PVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNTCK 241 (398)
Q Consensus 181 pvi~ATQmLeSMi~~~~PtraEvsDVanav~-dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~ 241 (398)
.|.+.- ....+-+..-+-++++++. -|+|.+.|. +|.=...|.+.-+....+.+
T Consensus 129 ~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~~~P~~~~~lv~~l~~ 183 (488)
T PRK09389 129 IVELSG------EDASRADLDFLKELYKAGIEAGADRICFC-DTVGILTPEKTYELFKRLSE 183 (488)
T ss_pred EEEEEE------eeCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCcCHHHHHHHHHHHHh
Confidence 887742 2344555555666666654 499999996 78888899988777666544
No 398
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=24.95 E-value=1.4e+02 Score=27.87 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=44.7
Q ss_pred cCeeEEcCCCCCCCC-----ChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhc--CCCCCchhhhhHH--HHHHhCCc
Q psy259 145 ADGIMVARGDLGIEI-----PPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIK--KPRATRAEISDVA--NAVLDGAD 215 (398)
Q Consensus 145 sDgimvaRgDLg~e~-----~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~--~~~PtraEvsDVa--nav~dG~D 215 (398)
.|-|+|..=.+-..- ..+.+..+-+.+-..|++.|.++++.+|+=..--. ..+|+. +|+. .++...+|
T Consensus 124 ~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~---~~~~gS~~i~~~aD 200 (242)
T cd00984 124 LGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLSRGVESRADKRPML---SDLRESGSIEQDAD 200 (242)
T ss_pred CCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhhhccCCCCCCH---HHHhhhcccccCCC
Confidence 466776654332111 12445555667777888999999999998653211 234443 4555 46778899
Q ss_pred EEEe
Q psy259 216 CVML 219 (398)
Q Consensus 216 ~vmL 219 (398)
+|+.
T Consensus 201 ~vi~ 204 (242)
T cd00984 201 VVMF 204 (242)
T ss_pred EEEE
Confidence 9994
No 399
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=24.83 E-value=3.5e+02 Score=26.58 Aligned_cols=128 Identities=23% Similarity=0.199 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHH--hCCcEEEecCccCCCCChHHHHHHHHHHH
Q psy259 163 KVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL--DGADCVMLSGETAKGDYPVECVRAMHNTC 240 (398)
Q Consensus 163 ~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~--dG~D~vmLS~ETA~G~yP~eaV~~m~~I~ 240 (398)
+....-+++++..++.|+|||.= .-..-.|.-. .--+.++. .|+|++.+++ ..| ..+|....
T Consensus 70 ~gi~~l~~~~~~~~~~g~~VilD------~K~~DIpnTv--~~~a~a~~~~~g~D~vTvh~--~~G------~d~l~~~~ 133 (261)
T TIGR02127 70 EGFKALEEVIAHARSLGLPVLAD------VKRGDIGSTA--SAYAKAWLGHLHADALTVSP--YLG------LDSLRPFL 133 (261)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEE------eeccChHHHH--HHHHHHHHhhcCCCEEEECC--cCC------HHHHHHHH
Confidence 33445566778888999999972 1112233111 12344444 4899999974 344 34444444
Q ss_pred HHHHhh---hh------h--hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc---CCcEEEEECCCchHHHHHHhhCCCC
Q psy259 241 KEAEAA---IW------H--TKLLTELKSMLPLPIDSAHSVAIAAVEAASKV---FAGAIVVLTTTGTSARLISKYRPRC 306 (398)
Q Consensus 241 ~~aE~~---~~------~--~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~---~A~aIIv~T~SG~tA~~iSkyRP~~ 306 (398)
..++.. ++ + ..-|.++. .....+..+.++.-|..+.... +...+||-.+++.-+..+-+..|+.
T Consensus 134 ~~~~~~~~~v~VlvlTSnp~~~~lq~~~--~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR~~~~~~ 211 (261)
T TIGR02127 134 EYARANGAGIFVLVKTSNPGGADLQDLR--VSDGRTVYEEVAELAGELNESPGDCSSVGAVVGATSPGDLLRLRIEMPTA 211 (261)
T ss_pred HHHhhcCCEEEEEEeCCCCCHHHHhhhh--ccCCCCHHHHHHHHHHHhccccCcCCceEEEECCCCHHHHHHHHHhCCCC
Confidence 444421 10 0 00111111 0011123344444443332211 3678999888888777776655665
Q ss_pred CE
Q psy259 307 PI 308 (398)
Q Consensus 307 PI 308 (398)
||
T Consensus 212 ~i 213 (261)
T TIGR02127 212 PF 213 (261)
T ss_pred eE
Confidence 53
No 400
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=24.80 E-value=1.7e+02 Score=27.40 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=43.6
Q ss_pred CcccHHHHHHHHHHhhchhcCCcccEE-EeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHH
Q psy259 100 PNLYESNVRLIEKLMATGEQGKHIKII-AKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNK 177 (398)
Q Consensus 100 ~~~~vddV~~ir~~~~l~~~~~~~~ii-aKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~ 177 (398)
+-.|.+=++.+.+. +.+.|.++.+. +. ...+-.+.++.++.- .|||+|...|- .....+++.+.+
T Consensus 11 ~~~~~~~~~gi~~~--~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~----------~~~~~~~~~~~~ 77 (289)
T cd01540 11 EPWFQTEWKFAKKA--AKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDV----------KLGPAIVAKAKA 77 (289)
T ss_pred CcHHHHHHHHHHHH--HHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCch----------hhhHHHHHHHHh
Confidence 44444334556666 66667665544 22 223334556666665 89999974331 123446778889
Q ss_pred cCCCEEEe
Q psy259 178 VGKPVICA 185 (398)
Q Consensus 178 ~gkpvi~A 185 (398)
+|+||++.
T Consensus 78 ~~iPvV~~ 85 (289)
T cd01540 78 YNMKVVAV 85 (289)
T ss_pred CCCeEEEe
Confidence 99999973
No 401
>PRK08227 autoinducer 2 aldolase; Validated
Probab=24.80 E-value=1.9e+02 Score=28.66 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeehhhHHhhcCCC-CCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHH
Q psy259 166 LAQKQMIAKCNKVGKPVICATQMLESMIKKPR-ATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 242 (398)
Q Consensus 166 ~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~-PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~ 242 (398)
...+++++.| ..||++| --|. +++.=...|.+|+..|+-++...----.-..|...++.++.|+.+
T Consensus 182 ~~f~~vv~a~---~vPVvia--------GG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~ 248 (264)
T PRK08227 182 EGFERITAGC---PVPIVIA--------GGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHE 248 (264)
T ss_pred HHHHHHHHcC---CCcEEEe--------CCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhC
Confidence 4556666655 5799997 2233 334445889999999999998865555557899989988888864
No 402
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=24.78 E-value=2.3e+02 Score=25.96 Aligned_cols=72 Identities=11% Similarity=0.218 Sum_probs=44.6
Q ss_pred CcccHHHHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHH
Q psy259 100 PNLYESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNK 177 (398)
Q Consensus 100 ~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~ 177 (398)
+-.|-+=+..+.+. +.+.|.++.+..-=+..+..+.+.+++.. .|||++...+. ..+ .+..+.+
T Consensus 15 ~~~~~~~~~~i~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~----~~~--------~~~~~~~ 80 (268)
T cd06271 15 DPFFAEFLSGLSEA--LAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRP----DDP--------RVALLLE 80 (268)
T ss_pred CccHHHHHHHHHHH--HHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCCC----CCh--------HHHHHHh
Confidence 33443334566666 67777777776544444555667777653 89999975532 111 1345678
Q ss_pred cCCCEEEe
Q psy259 178 VGKPVICA 185 (398)
Q Consensus 178 ~gkpvi~A 185 (398)
.|+|+++.
T Consensus 81 ~~ipvV~~ 88 (268)
T cd06271 81 RGFPFVTH 88 (268)
T ss_pred cCCCEEEE
Confidence 89999985
No 403
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=24.76 E-value=2.7e+02 Score=27.39 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=41.4
Q ss_pred hcCCcccEEEeec---ChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 118 EQGKHIKIIAKIE---NHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 118 ~~~~~~~iiaKIE---~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
..+.++.||+-+- +.++++.....-+. +||+|+.+... .....+.+...-+.+++ ..+.|+++
T Consensus 69 ~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y-~~~~~~~l~~~f~~va~---a~~lPv~i 135 (293)
T PRK04147 69 EAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFY-YPFSFEEICDYYREIID---SADNPMIV 135 (293)
T ss_pred HhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcC-CCCCHHHHHHHHHHHHH---hCCCCEEE
Confidence 3355789999884 45566655555555 89999998754 22334666666666654 45789987
No 404
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=24.43 E-value=1.2e+02 Score=31.49 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=46.6
Q ss_pred cCeeEEcCCCCCCCC-----ChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhc--CCCCCchhhhhHHHHHHhCCcEE
Q psy259 145 ADGIMVARGDLGIEI-----PPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIK--KPRATRAEISDVANAVLDGADCV 217 (398)
Q Consensus 145 sDgimvaRgDLg~e~-----~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~--~~~PtraEvsDVanav~dG~D~v 217 (398)
.|.|+|..=.|--.- ....+..+-+.+-..|++.+.||++.+|+=..--. ..+|+.+...+ ..++...||.|
T Consensus 306 ~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~-Sg~ieq~aD~v 384 (434)
T TIGR00665 306 LGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRE-SGSIEQDADIV 384 (434)
T ss_pred CCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhh-ccchhhcCCEE
Confidence 466776643322111 11335555567777888999999999998654322 34566554433 25888999998
Q ss_pred Ee
Q psy259 218 ML 219 (398)
Q Consensus 218 mL 219 (398)
++
T Consensus 385 i~ 386 (434)
T TIGR00665 385 MF 386 (434)
T ss_pred EE
Confidence 85
No 405
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=24.15 E-value=3.7e+02 Score=27.69 Aligned_cols=78 Identities=17% Similarity=0.082 Sum_probs=56.0
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHh-hcCCCCCchhhhhHH----HHHHhCCcEEEecCccCCCCChHHHH
Q psy259 159 IPPWKVFLAQKQMIAKCNKVGKPVICATQMLESM-IKKPRATRAEISDVA----NAVLDGADCVMLSGETAKGDYPVECV 233 (398)
Q Consensus 159 ~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSM-i~~~~PtraEvsDVa----nav~dG~D~vmLS~ETA~G~yP~eaV 233 (398)
...+++....+++++.|+++|..|.+. + || ..+|.-+|++...+. .++..|+|.|.|. +|.=-..|.+..
T Consensus 155 ~t~~e~l~~~~~~v~~Ak~~Gl~v~~~---i-s~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~-DT~G~a~P~~v~ 229 (347)
T PLN02746 155 CSIEESLVRYREVALAAKKHSIPVRGY---V-SCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLG-DTIGVGTPGTVV 229 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEE---E-EeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEec-CCcCCcCHHHHH
Confidence 345777788889999999999998521 0 11 245666776554433 3667899999997 777777899988
Q ss_pred HHHHHHHH
Q psy259 234 RAMHNTCK 241 (398)
Q Consensus 234 ~~m~~I~~ 241 (398)
+.+..+..
T Consensus 230 ~lv~~l~~ 237 (347)
T PLN02746 230 PMLEAVMA 237 (347)
T ss_pred HHHHHHHH
Confidence 88887754
No 406
>PRK08116 hypothetical protein; Validated
Probab=24.13 E-value=3.3e+02 Score=26.59 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=31.1
Q ss_pred HHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehh
Q psy259 142 IAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQM 188 (398)
Q Consensus 142 l~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQm 188 (398)
+..+|-++|. |||.+-..+.....--.|+..-...|||+|++|+.
T Consensus 176 l~~~dlLviD--Dlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 176 LVNADLLILD--DLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred hcCCCEEEEe--cccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3447888886 99988665443333335666666789999998874
No 407
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=24.12 E-value=93 Score=31.66 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=31.2
Q ss_pred HHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHH
Q psy259 138 LDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLES 191 (398)
Q Consensus 138 ~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeS 191 (398)
++..++. .+||.++=--.| .+|. + ......++++.+.|+||+++||-.+-
T Consensus 226 l~~~~~~~~~GiVl~~~G~G-n~p~-~--~~~~~~l~~~~~~Gi~VV~~Sr~~~G 276 (335)
T PRK09461 226 VRNFLRQPVKALILRSYGVG-NAPQ-N--PALLQELKEASERGIVVVNLTQCMSG 276 (335)
T ss_pred HHHHHhCCCCEEEEccCCCC-CCCC-C--HHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 5555555 799999721111 2231 1 22335567788999999999997654
No 408
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=24.01 E-value=5.6e+02 Score=23.45 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=42.8
Q ss_pred cccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcC-CCEEEeehhhHHhhcCCCCC
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVG-KPVICATQMLESMIKKPRAT 199 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~g-kpvi~ATQmLeSMi~~~~Pt 199 (398)
..+|....|+ ++.++|-++. +|+||+... .++++..+.+ ..+..+ +..+.+ +.--|
T Consensus 80 ~~~I~VEv~~---~ee~~ea~~~g~d~I~lD~~------~~~~~~~~v~----~l~~~~~~v~ie~---------SGGI~ 137 (169)
T PF01729_consen 80 KKKIEVEVEN---LEEAEEALEAGADIIMLDNM------SPEDLKEAVE----ELRELNPRVKIEA---------SGGIT 137 (169)
T ss_dssp TSEEEEEESS---HHHHHHHHHTT-SEEEEES-------CHHHHHHHHH----HHHHHTTTSEEEE---------ESSSS
T ss_pred CceEEEEcCC---HHHHHHHHHhCCCEEEecCc------CHHHHHHHHH----HHhhcCCcEEEEE---------ECCCC
Confidence 4458888887 3455566665 799999955 5566644444 334433 333332 22222
Q ss_pred chhhhhHHHHHHhCCcEEEecCc
Q psy259 200 RAEISDVANAVLDGADCVMLSGE 222 (398)
Q Consensus 200 raEvsDVanav~dG~D~vmLS~E 222 (398)
- ..|.....-|+|.+-.++=
T Consensus 138 ~---~ni~~ya~~gvD~isvg~~ 157 (169)
T PF01729_consen 138 L---ENIAEYAKTGVDVISVGSL 157 (169)
T ss_dssp T---TTHHHHHHTT-SEEEECHH
T ss_pred H---HHHHHHHhcCCCEEEcChh
Confidence 2 3456666789999987653
No 409
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=23.99 E-value=4.2e+02 Score=24.04 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=45.2
Q ss_pred HHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHh
Q psy259 134 GVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLD 212 (398)
Q Consensus 134 ~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~d 212 (398)
-.+.+++.++. +|.|.+-=.|+ +..++...-+.+...|+..|.|+++. .++.-+...
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ 80 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGL----DTRERLELARALKELCRRYGVPLIVN------------------DRVDLALAV 80 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHc
Confidence 34455566665 68888765554 23444445555778899999999862 345667778
Q ss_pred CCcEEEecCc
Q psy259 213 GADCVMLSGE 222 (398)
Q Consensus 213 G~D~vmLS~E 222 (398)
|+|+|.+..+
T Consensus 81 gad~vh~~~~ 90 (212)
T PRK00043 81 GADGVHLGQD 90 (212)
T ss_pred CCCEEecCcc
Confidence 9999999654
No 410
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=23.96 E-value=7.3e+02 Score=24.71 Aligned_cols=121 Identities=14% Similarity=0.082 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 249 (398)
-+...|+..|.|+.+- .|..+.-.-+...-..||+.+...+ .+.-++.+...++.++-...++.
T Consensus 65 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~l~~~GA~v~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~ 128 (316)
T cd06448 65 AAAYAARKLGVPCTIV-----------VPESTKPRVVEKLRDEGATVVVHGK-----VWWEADNYLREELAENDPGPVYV 128 (316)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEECC-----chHHHHHHHHHHHHhccCCcEEe
Confidence 4567899999999984 3333333335556678999877542 21223333333333221011111
Q ss_pred hHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcC----CcEEEEECCCchHHHHHH----hhC-CCCCEEEEeCCh
Q psy259 250 TKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF----AGAIVVLTTTGTSARLIS----KYR-PRCPIISVTRFP 315 (398)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~----A~aIIv~T~SG~tA~~iS----kyR-P~~PIIAVT~n~ 315 (398)
.+ |++ + ...+.-...+.++..+++ .++||+..=+|.+..-++ .++ |+++|++|-+..
T Consensus 129 ~~-~~n-------~-~~~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g 194 (316)
T cd06448 129 HP-FDD-------P-LIWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEG 194 (316)
T ss_pred CC-CCC-------c-hhhccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 11 110 1 111111223456666553 689999999998875554 454 999999998854
No 411
>PRK13936 phosphoheptose isomerase; Provisional
Probab=23.93 E-value=88 Score=29.08 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=25.9
Q ss_pred CCcEEEEECCCchHHHH-----HHhhCCCCCEEEEeCCh
Q psy259 282 FAGAIVVLTTTGTSARL-----ISKYRPRCPIISVTRFP 315 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~-----iSkyRP~~PIIAVT~n~ 315 (398)
.-+..|++|.||+|... .+|-| .+|||++|.+.
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~-g~~iI~IT~~~ 148 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHER-EMHVVALTGRD 148 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 55789999999998744 34555 79999999854
No 412
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=23.86 E-value=4.5e+02 Score=25.65 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=50.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCEEEe-ehhhHHhhcCCCCCchhhhhHHHHHH-hCCcEEEecCccCCCCChHHHHHHHH
Q psy259 160 PPWKVFLAQKQMIAKCNKVGKPVICA-TQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMH 237 (398)
Q Consensus 160 ~~~~v~~~qk~ii~~c~~~gkpvi~A-TQmLeSMi~~~~PtraEvsDVanav~-dG~D~vmLS~ETA~G~yP~eaV~~m~ 237 (398)
..++.....+..++.+++.|..|.+. +.+ ...++-+...+-+++..+. .|+|.+.|. +|.=...|.+.-+..+
T Consensus 113 ~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~----~d~~~~~~~~~~~~~~~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~ 187 (273)
T cd07941 113 TLEENLAMIRDSVAYLKSHGREVIFDAEHF----FDGYKANPEYALATLKAAAEAGADWLVLC-DTNGGTLPHEIAEIVK 187 (273)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEeEEec----cccCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCCCHHHHHHHHH
Confidence 34666777788999999999988662 222 1122223334455555443 599999885 7777888988766666
Q ss_pred HHHH
Q psy259 238 NTCK 241 (398)
Q Consensus 238 ~I~~ 241 (398)
.+.+
T Consensus 188 ~l~~ 191 (273)
T cd07941 188 EVRE 191 (273)
T ss_pred HHHH
Confidence 5554
No 413
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=23.85 E-value=5.9e+02 Score=23.64 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=42.2
Q ss_pred cccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCC---CCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCC
Q psy259 122 HIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGI---EIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPR 197 (398)
Q Consensus 122 ~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~---e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~ 197 (398)
++.+++.+.+.+-.. ...+. +|.|.+...++.- ...... ...-+.+. ...+.|++++-- .
T Consensus 123 ~~~iiv~v~t~~ea~---~a~~~G~d~i~~~~~g~t~~~~~~~~~~-~~~l~~i~---~~~~ipvia~GG---------I 186 (219)
T cd04729 123 NCLLMADISTLEEAL---NAAKLGFDIIGTTLSGYTEETAKTEDPD-FELLKELR---KALGIPVIAEGR---------I 186 (219)
T ss_pred CCeEEEECCCHHHHH---HHHHcCCCEEEccCccccccccCCCCCC-HHHHHHHH---HhcCCCEEEeCC---------C
Confidence 677888776654332 22222 6887664222211 111111 12222222 233799997422 2
Q ss_pred CCchhhhhHHHHHHhCCcEEEec
Q psy259 198 ATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 198 PtraEvsDVanav~dG~D~vmLS 220 (398)
=+ ..|+..++..|+|++++.
T Consensus 187 ~~---~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 187 NS---PEQAAKALELGADAVVVG 206 (219)
T ss_pred CC---HHHHHHHHHCCCCEEEEc
Confidence 12 257888899999999996
No 414
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.84 E-value=84 Score=29.53 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=0.0
Q ss_pred cEEEEECCCchHHHH-----HHhhCCCCCEEEEeCChh
Q psy259 284 GAIVVLTTTGTSARL-----ISKYRPRCPIISVTRFPQ 316 (398)
Q Consensus 284 ~aIIv~T~SG~tA~~-----iSkyRP~~PIIAVT~n~~ 316 (398)
+.+|++|.||.|... .+|-| .+|+|++|.++.
T Consensus 115 DllI~iS~SG~t~~vi~a~~~Ak~~-G~~vI~iT~~~~ 151 (196)
T PRK13938 115 DTLFAISTSGNSMSVLRAAKTAREL-GVTVVAMTGESG 151 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHC-CCEEEEEeCCCC
No 415
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=23.71 E-value=1.4e+02 Score=29.22 Aligned_cols=64 Identities=25% Similarity=0.202 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCC-CEEEEeCChhhhhhccccccceEEecC
Q psy259 266 SAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRC-PIISVTRFPQVARQLHLHRSIIPLVYE 333 (398)
Q Consensus 266 ~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~-PIIAVT~n~~taRqL~L~wGV~Pvl~~ 333 (398)
..+.||..|+++-. +-+.| |=.+|.|+..+++|=|.. ++-.||++..++..|.-.-++.-++..
T Consensus 92 ~K~~IA~~Aa~~I~--dgd~I--fld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~v~llG 156 (269)
T PRK09802 92 MKRSVAKAAVELIQ--PGHRV--ILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTG 156 (269)
T ss_pred HHHHHHHHHHhhCC--CCCEE--EECCchHHHHHHHhcCcCCCeEEEeCCHHHHHHHHhCCCCEEEEEC
Confidence 34577777766643 33433 337999999999998764 799999999999888777776655544
No 416
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=23.38 E-value=5.4e+02 Score=25.58 Aligned_cols=103 Identities=11% Similarity=0.175 Sum_probs=69.9
Q ss_pred CcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCC
Q psy259 121 KHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRAT 199 (398)
Q Consensus 121 ~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~Pt 199 (398)
..+.|.-....-.-++.+.+-++. .+-||+---+| |.++....-+++.+.|+++|.||-.----|-.- ...|.
T Consensus 73 ~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~----~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~--d~~~~ 146 (281)
T PRK06806 73 AKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHL----PLEENIQKTKEIVELAKQYGATVEAEIGRVGGS--EDGSE 146 (281)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCC----CHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCc--cCCcc
Confidence 368899999887666666666665 79999986654 788888999999999999999986432211100 00011
Q ss_pred -----chhhhhHHHHHH-hCCcEEEecCccCCCCCh
Q psy259 200 -----RAEISDVANAVL-DGADCVMLSGETAKGDYP 229 (398)
Q Consensus 200 -----raEvsDVanav~-dG~D~vmLS~ETA~G~yP 229 (398)
--...++..++. .|+|.+-+|--|..|.||
T Consensus 147 ~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~ 182 (281)
T PRK06806 147 DIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYN 182 (281)
T ss_pred cccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCC
Confidence 011233445553 499999998888888886
No 417
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=23.36 E-value=1.6e+02 Score=28.64 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=31.9
Q ss_pred hcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 136 KNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 136 ~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
+.+.++++.+|++.|+.|-| .+.........++.|++.++|+++
T Consensus 46 ~e~~~~~~~~~alvi~~G~l-----~~~~~~~i~~~~~~a~~~~~pvVl 89 (263)
T PRK09355 46 EEAEEMAKIAGALVINIGTL-----TEERIEAMLAAGKIANEAGKPVVL 89 (263)
T ss_pred HHHHHHHHhcCceEEeCCCC-----CHHHHHHHHHHHHHHHhcCCCEEE
Confidence 45667778899999988855 233334444566778999999987
No 418
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.35 E-value=6.2e+02 Score=23.70 Aligned_cols=97 Identities=16% Similarity=0.299 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEECCCch--HHHHHH-----hh---CCCCCEEEEeCChhhh--------------hhcc
Q psy259 268 HSVAIAAVEAASK-VFAGAIVVLTTTGT--SARLIS-----KY---RPRCPIISVTRFPQVA--------------RQLH 322 (398)
Q Consensus 268 ~~ia~aav~~A~~-~~A~aIIv~T~SG~--tA~~iS-----ky---RP~~PIIAVT~n~~ta--------------RqL~ 322 (398)
+.+..++-.++.. .+++-|+++-..|. .|+-++ +| ||..|.++++.+.... ||+.
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~ 104 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVR 104 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHH
Confidence 4444444444443 36778888875554 355554 23 9999999998766543 4443
Q ss_pred --ccccceEEecCCCCCCCcccCHHHHHHHHHHHHHHcCCCCCCCeEEEEeccCCC
Q psy259 323 --LHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG 376 (398)
Q Consensus 323 --L~wGV~Pvl~~~~~~~~w~~d~d~~I~~ai~~ake~Glik~GD~VVVvsG~~~g 376 (398)
+..|=.-+.+... ...+ -+..+++.+|++| -++|.++|.+.+
T Consensus 105 ~~~~~gDvli~iS~S------G~s~-~v~~a~~~Ak~~G-----~~vI~IT~~~~s 148 (196)
T PRK10886 105 ALGHAGDVLLAISTR------GNSR-DIVKAVEAAVTRD-----MTIVALTGYDGG 148 (196)
T ss_pred HcCCCCCEEEEEeCC------CCCH-HHHHHHHHHHHCC-----CEEEEEeCCCCC
Confidence 4444444444332 2222 3566888898865 468888887654
No 419
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=23.21 E-value=2.6e+02 Score=25.57 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=40.5
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHH--H--HHHHHHHHHHHcCCC
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVF--L--AQKQMIAKCNKVGKP 181 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~--~--~qk~ii~~c~~~gkp 181 (398)
++..+.+. |.+.|.++.++.. .++ ++..|+|++ +|- ..+.+.+. . -....++.+.+.|+|
T Consensus 10 ~~~~~~~~--l~~~g~~v~v~~~---------~~~-l~~~d~iii-pG~---~~~~~~~~~~~~~~~~~~i~~~~~~~~p 73 (198)
T cd01748 10 NLRSVANA--LERLGAEVIITSD---------PEE-ILSADKLIL-PGV---GAFGDAMANLRERGLIEALKEAIASGKP 73 (198)
T ss_pred hHHHHHHH--HHHCCCeEEEEcC---------hHH-hccCCEEEE-CCC---CcHHHHHHHHHHcChHHHHHHHHHCCCc
Confidence 56777788 8877877777652 122 455899999 561 22222211 1 125677788888999
Q ss_pred EEEee
Q psy259 182 VICAT 186 (398)
Q Consensus 182 vi~AT 186 (398)
++-..
T Consensus 74 ilGiC 78 (198)
T cd01748 74 FLGIC 78 (198)
T ss_pred EEEEC
Confidence 87544
No 420
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=23.20 E-value=87 Score=32.19 Aligned_cols=48 Identities=21% Similarity=0.483 Sum_probs=31.3
Q ss_pred HHHHHHh-cCeeEEcCCCCCC-CCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHh
Q psy259 138 LDEIIAE-ADGIMVARGDLGI-EIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESM 192 (398)
Q Consensus 138 ~deIl~~-sDgimvaRgDLg~-e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSM 192 (398)
++.+++. .+||.|+= +|. .+|. .....++.|.+.|.||+++||-..-.
T Consensus 255 l~~~~~~g~~GlVl~g--~G~Gn~p~-----~~~~al~~a~~~GipVV~~Sr~~~G~ 304 (349)
T TIGR00520 255 VNAVLDAGAKGIVLAG--VGNGSLSA-----AGLKVNETAAKLGVPIVRSSRVPDGM 304 (349)
T ss_pred HHHHHhCCCCEEEEEe--ECCCCCCH-----HHHHHHHHHHHCCCEEEEEccCCCCc
Confidence 4555555 79999871 111 2332 34455677889999999999965543
No 421
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=23.20 E-value=86 Score=31.77 Aligned_cols=78 Identities=12% Similarity=0.250 Sum_probs=51.9
Q ss_pred HHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHH-----hhc------CCCCCc
Q psy259 133 QGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLES-----MIK------KPRATR 200 (398)
Q Consensus 133 ~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeS-----Mi~------~~~Ptr 200 (398)
+-.+.++.+++. .-+++++|| .+.| +.+++.|++++.|++.. .++-| +.. .|..+.
T Consensus 70 ~~~~~~~~~~~~~~P~iIvt~~---~~~p--------~~l~~~a~~~~ip~l~t-~~~~~~~~~~l~~~L~~~la~~~~~ 137 (304)
T TIGR00679 70 EQKQIIHNLLTLNPPAIILSKS---FTDP--------TVLLQVNETYQVPILKT-DLFSTELSFRLETYLNEQFAPTAAI 137 (304)
T ss_pred HHHHHHHHHhCCCCCEEEEECc---CCCC--------HHHHHHHHHhCCcEEEe-CCcHHHHHHHHHHHHHHhhccceee
Confidence 445567777776 789999987 2333 34788999999999953 32221 222 232222
Q ss_pred hhhhhHHHHHHhCCcEEEecCccCCCC
Q psy259 201 AEISDVANAVLDGADCVMLSGETAKGD 227 (398)
Q Consensus 201 aEvsDVanav~dG~D~vmLS~ETA~G~ 227 (398)
- +.+|.-+--+|++.|++..||
T Consensus 138 h-----g~~v~i~g~gvli~G~sg~GK 159 (304)
T TIGR00679 138 H-----GVLVEVYGVGVLITGKSGVGK 159 (304)
T ss_pred e-----eEEEEECCEEEEEEcCCCCCH
Confidence 2 345556668999999999998
No 422
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.16 E-value=3.2e+02 Score=25.14 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=40.0
Q ss_pred HHHHHHHhhchhcCCcccEEEeecChH-HHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKIENHQ-GVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKIE~~~-~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
+..+.+. +.+.|-++.++.--.+++ -.+.++.++.. .|||++..+|. .....++..+++.|.|+++
T Consensus 18 ~~gi~~~--~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~----------~~~~~~i~~~~~~~ipvV~ 85 (273)
T cd06305 18 LAGTKAE--AEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRA----------EVLKPWVKRALDAGIPVVA 85 (273)
T ss_pred HHHHHHH--HHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh----------hhhHHHHHHHHHcCCCEEE
Confidence 3455555 666676655543222222 24556666554 89999975543 1223456778889999987
Q ss_pred e
Q psy259 185 A 185 (398)
Q Consensus 185 A 185 (398)
-
T Consensus 86 ~ 86 (273)
T cd06305 86 F 86 (273)
T ss_pred e
Confidence 4
No 423
>PRK05638 threonine synthase; Validated
Probab=23.15 E-value=6.1e+02 Score=26.55 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhC--CCCCEEEEeC
Q psy259 266 SAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYR--PRCPIISVTR 313 (398)
Q Consensus 266 ~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyR--P~~PIIAVT~ 313 (398)
..+-.+..++..|.+.+.+.|++ ..||+++..+|-|- -..|.+.|.+
T Consensus 95 fKdR~a~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~vp 143 (442)
T PRK05638 95 FRDRLATVAVSYGLPYAANGFIV-ASDGNAAASVAAYSARAGKEAFVVVP 143 (442)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEEEe
Confidence 33444445555555556665555 45677776665542 2345555554
No 424
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=22.98 E-value=57 Score=26.26 Aligned_cols=16 Identities=44% Similarity=0.690 Sum_probs=14.0
Q ss_pred CCCCCeEEEEeccCCC
Q psy259 361 LNQGDPVIVVTGWKKG 376 (398)
Q Consensus 361 ik~GD~VVVvsG~~~g 376 (398)
+++||.|+|++|--.|
T Consensus 7 I~kGD~V~Vi~G~dKG 22 (76)
T PRK12281 7 VKKGDMVKVIAGDDKG 22 (76)
T ss_pred ccCCCEEEEeEcCCCC
Confidence 7899999999997666
No 425
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=22.94 E-value=1e+02 Score=26.31 Aligned_cols=55 Identities=29% Similarity=0.298 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchh-----hhhHHHHHHhCCcEEEecC
Q psy259 166 LAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAE-----ISDVANAVLDGADCVMLSG 221 (398)
Q Consensus 166 ~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraE-----vsDVanav~dG~D~vmLS~ 221 (398)
.+.+.+.+.+.+.|.||+ .|+|-.+++...-|-..= .++-++..+.++|+|.+=|
T Consensus 26 ~a~~~l~~lae~~~~Pv~-~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG 85 (137)
T PF00205_consen 26 GAAEELRELAEKLGIPVA-TTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIG 85 (137)
T ss_dssp TCHHHHHHHHHHHTSEEE-EEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEES
T ss_pred hHHHHHHHHHHHHCCCEE-ecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEEC
Confidence 566778899999999995 688887777766663210 1345777779999999876
No 426
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=22.90 E-value=58 Score=32.55 Aligned_cols=30 Identities=37% Similarity=0.731 Sum_probs=18.2
Q ss_pred ccEEE--eecChHHHhcHHHHHHh--cCeeEEcCCCC
Q psy259 123 IKIIA--KIENHQGVKNLDEIIAE--ADGIMVARGDL 155 (398)
Q Consensus 123 ~~iia--KIE~~~~v~n~deIl~~--sDgimvaRgDL 155 (398)
+.||+ -|.+.+ ...++++. +||||||||=|
T Consensus 184 ipvi~NGdI~s~~---d~~~~~~~tg~dgvMigRgal 217 (309)
T PF01207_consen 184 IPVIANGDIFSPE---DAERMLEQTGADGVMIGRGAL 217 (309)
T ss_dssp SEEEEESS--SHH---HHHHHCCCH-SSEEEESHHHC
T ss_pred ceeEEcCccCCHH---HHHHHHHhcCCcEEEEchhhh
Confidence 78888 344432 23333444 89999999944
No 427
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=22.86 E-value=3.8e+02 Score=27.52 Aligned_cols=136 Identities=13% Similarity=-0.021 Sum_probs=72.3
Q ss_pred hHHHhcHHHHHHh-----cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhH-----HhhcCCCCCch
Q psy259 132 HQGVKNLDEIIAE-----ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLE-----SMIKKPRATRA 201 (398)
Q Consensus 132 ~~~v~n~deIl~~-----sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLe-----SMi~~~~Ptra 201 (398)
.+++.++...+.. +|||++.++ ++.+.. .-+..+++.+++ +| +=.....|...
T Consensus 45 ~~~l~~~K~lv~~~l~~~asaILld~~-----yG~~a~---------~~~~~~~GLil~---~e~tg~d~t~~gr~~~~~ 107 (340)
T PRK12858 45 YTDLVDFKLAVSEALTPYASAILLDPE-----YGLPAA---------KVRDPNCGLLLS---YEKTGYDATAPGRLPDLL 107 (340)
T ss_pred hhhHHHHHHHHHHHHhhCCCEEEEccc-----cChhhh---------cccCCCCCeEEE---ecccccccCCCCCCcccc
Confidence 3466666655543 899999863 111110 012356778887 43 11111244445
Q ss_pred hhhhHHHHHHhCCcEEEecCccCC-CCCh----HHHHHHHHHHHHHHHhhhhhhHHHHHH-hhcC----CCC----CChH
Q psy259 202 EISDVANAVLDGADCVMLSGETAK-GDYP----VECVRAMHNTCKEAEAAIWHTKLLTEL-KSML----PLP----IDSA 267 (398)
Q Consensus 202 EvsDVanav~dG~D~vmLS~ETA~-G~yP----~eaV~~m~~I~~~aE~~~~~~~~~~~~-~~~~----~~~----~~~~ 267 (398)
....|-.++..|+|||-+.- -. ..++ .+-.+.+.++..+.++.- ..++-++ .... ... ....
T Consensus 108 ~~~sve~a~~~GAdAVk~lv--~~~~d~~~~~~~~~~~~l~rv~~ec~~~g--iPlllE~l~y~~~~~~~~~~~~a~~~p 183 (340)
T PRK12858 108 DNWSVRRIKEAGADAVKLLL--YYRPDEDDAINDRKHAFVERVGAECRAND--IPFFLEPLTYDGKGSDKKAEEFAKVKP 183 (340)
T ss_pred ccccHHHHHHcCCCEEEEEE--EeCCCcchHHHHHHHHHHHHHHHHHHHcC--CceEEEEeccCCCccccccccccccCH
Confidence 56778999999999998731 11 2224 355666788887777641 1111110 0000 000 0124
Q ss_pred HHHHHHHHHHHH-hcCCcEEEE
Q psy259 268 HSVAIAAVEAAS-KVFAGAIVV 288 (398)
Q Consensus 268 ~~ia~aav~~A~-~~~A~aIIv 288 (398)
+.++.++-..+. +++++.+=+
T Consensus 184 ~~V~~a~r~~~~~elGaDvlKv 205 (340)
T PRK12858 184 EKVIKTMEEFSKPRYGVDVLKV 205 (340)
T ss_pred HHHHHHHHHHhhhccCCeEEEe
Confidence 566666666654 689986544
No 428
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.73 E-value=5.8e+02 Score=24.66 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHH-hCCcEEEecCccCCCCChHHHHHHHHHH
Q psy259 161 PWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNT 239 (398)
Q Consensus 161 ~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~-dG~D~vmLS~ETA~G~yP~eaV~~m~~I 239 (398)
.++....-+..++.|++.|..|.+. ....++-+...+.+++..+. -|+|.+.|. +|.=..+|.+.-+.+..+
T Consensus 109 ~~~~~~~~~~~i~~a~~~G~~v~~~------~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 109 REEVLERAVEAVEYAKSHGLDVEFS------AEDATRTDLDFLIEVVEAAIEAGATTINIP-DTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEe------eecCCCCCHHHHHHHHHHHHHcCCCEEEEC-CCCCCCCHHHHHHHHHHH
Confidence 3455566678889999999877642 12334455666666665544 599999996 777778999988877776
Q ss_pred HHH
Q psy259 240 CKE 242 (398)
Q Consensus 240 ~~~ 242 (398)
-+.
T Consensus 182 ~~~ 184 (268)
T cd07940 182 KEN 184 (268)
T ss_pred HHh
Confidence 653
No 429
>PRK08760 replicative DNA helicase; Provisional
Probab=22.72 E-value=1.2e+02 Score=32.29 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=48.1
Q ss_pred cCeeEEcCCCCCC-----CCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhh--cCCCCCchhhhhHHHHHHhCCcEE
Q psy259 145 ADGIMVARGDLGI-----EIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMI--KKPRATRAEISDVANAVLDGADCV 217 (398)
Q Consensus 145 sDgimvaRgDLg~-----e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi--~~~~PtraEvsDVanav~dG~D~v 217 (398)
.|.|+|.-=.|-- +--..++-.+-+.+-..|++.+.|||+.+|+=-.-- .+.+|..+..-| ..+|...||.|
T Consensus 340 ~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLre-Sg~IeqdAD~v 418 (476)
T PRK08760 340 LGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRE-SGAIEQDADMI 418 (476)
T ss_pred CCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhh-ccchhcCCCEE
Confidence 4677776432221 111244666777888889999999999999843321 235676554333 25788999999
Q ss_pred Ee
Q psy259 218 ML 219 (398)
Q Consensus 218 mL 219 (398)
|+
T Consensus 419 l~ 420 (476)
T PRK08760 419 VF 420 (476)
T ss_pred EE
Confidence 87
No 430
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=22.62 E-value=5.3e+02 Score=22.64 Aligned_cols=46 Identities=26% Similarity=0.370 Sum_probs=28.2
Q ss_pred cCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHH
Q psy259 178 VGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAM 236 (398)
Q Consensus 178 ~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m 236 (398)
...|++.+. -.+.. ++..+...|+|++.+.+---.-.-|.++++.+
T Consensus 149 ~~~pv~a~G----------Gi~~~---~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 149 VEIPVVAIG----------GITPE---NAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCCEEEEC----------CCCHH---HHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 578998752 23332 45666667999999875433223466665544
No 431
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.62 E-value=1.5e+02 Score=28.11 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHH
Q psy259 167 AQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRA 235 (398)
Q Consensus 167 ~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~ 235 (398)
..+.+++.++++|++|.+.| ++ +..+...++..|+|+|+- +||-...+.
T Consensus 200 ~~~~~v~~~~~~G~~v~vWT------VN-------~~~~~~~l~~~gVdgIiT-------D~p~~~~~~ 248 (249)
T cd08561 200 VTPRFVRAAHAAGLEVHVWT------VN-------DPAEMRRLLDLGVDGIIT-------DRPDLLLEV 248 (249)
T ss_pred CCHHHHHHHHHCCCEEEEEe------cC-------CHHHHHHHHhcCCCEEEc-------CCHHHHHhh
Confidence 45689999999999999987 11 125667888889999875 677655543
No 432
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=22.50 E-value=5.5e+02 Score=24.95 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred hcHHHHHHh-cCeeEE-cCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhC
Q psy259 136 KNLDEIIAE-ADGIMV-ARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDG 213 (398)
Q Consensus 136 ~n~deIl~~-sDgimv-aRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG 213 (398)
++++-.++. .||+++ |-.-=+..+..++-....+..++.++. ..||++- -....|+.=+.=.--|..-|
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~-~~~vi~g--------v~~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG-RVPVIAG--------VGANSTEEAIELARHAQDAG 96 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT-SSEEEEE--------EESSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC-ceEEEec--------CcchhHHHHHHHHHHHhhcC
Q ss_pred CcEEEecCccCCCCChHHHHHHHHHHHHHHH
Q psy259 214 ADCVMLSGETAKGDYPVECVRAMHNTCKEAE 244 (398)
Q Consensus 214 ~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE 244 (398)
+|++|+..=--...-+-+.+++.+.|+...+
T Consensus 97 ad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~ 127 (289)
T PF00701_consen 97 ADAVLVIPPYYFKPSQEELIDYFRAIADATD 127 (289)
T ss_dssp -SEEEEEESTSSSCCHHHHHHHHHHHHHHSS
T ss_pred ceEEEEeccccccchhhHHHHHHHHHHhhcC
No 433
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=22.48 E-value=3.8e+02 Score=22.98 Aligned_cols=51 Identities=10% Similarity=0.236 Sum_probs=31.1
Q ss_pred hhhhhhccccccceE--EecCCCCCCCcccCHHHHHHHHHHHHHHcCCCCCCCeEEEE-eccC
Q psy259 315 PQVARQLHLHRSIIP--LVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVV-TGWK 374 (398)
Q Consensus 315 ~~taRqL~L~wGV~P--vl~~~~~~~~w~~d~d~~I~~ai~~ake~Glik~GD~VVVv-sG~~ 374 (398)
....++...-.||-+ ++.+.. ..|..+-..++.+.+.++|+ ..|++| +.++
T Consensus 53 a~~m~~~l~~~gv~~~~I~~e~~-----s~~T~ena~~~~~~~~~~~~----~~i~lVTs~~H 106 (150)
T cd06259 53 AEAMARYLIELGVPAEAILLEDR-----STNTYENARFSAELLRERGI----RSVLLVTSAYH 106 (150)
T ss_pred HHHHHHHHHHcCCCHHHeeecCC-----CCCHHHHHHHHHHHHHhcCC----CeEEEECCHHH
Confidence 345666666677633 344333 25666677788889999887 445554 4443
No 434
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=22.42 E-value=1.3e+02 Score=30.75 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=38.4
Q ss_pred hcCCcEEEEECCCchHHHHHHhh----CCCCCEEEEeCChhhh--hhccccccce
Q psy259 280 KVFAGAIVVLTTTGTSARLISKY----RPRCPIISVTRFPQVA--RQLHLHRSII 328 (398)
Q Consensus 280 ~~~A~aIIv~T~SG~tA~~iSky----RP~~PIIAVT~n~~ta--RqL~L~wGV~ 328 (398)
..+|+-||+.+-|.+||+-++.. ++...+|++|....+. +.|.+|--|.
T Consensus 133 ~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N~~Fve~lg~Yd~V~ 187 (314)
T PF11017_consen 133 FFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARNVAFVESLGCYDEVL 187 (314)
T ss_pred cCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcchhhhhccCCceEEe
Confidence 46889999999999999877764 8899999999866654 5555555554
No 435
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=22.41 E-value=3.7e+02 Score=25.02 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEe
Q psy259 167 AQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 219 (398)
Q Consensus 167 ~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmL 219 (398)
+.+.+++.++++|++|++-| ++ +..++..++..|+|+|+-
T Consensus 188 ~~~~~i~~~~~~g~~v~~Wt------vn-------~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 188 LTEEVVEELKKRGIPVRLWT------VN-------EEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred cCHHHHHHHHHCCCEEEEEe------cC-------CHHHHHHHHHCCCCEEeC
Confidence 46789999999999999876 11 235568888899999874
No 436
>PF13606 Ank_3: Ankyrin repeat
Probab=22.41 E-value=74 Score=20.54 Aligned_cols=16 Identities=6% Similarity=0.335 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHhcccc
Q psy259 63 VAVDMLEKIIETESNS 78 (398)
Q Consensus 63 ~~~e~l~~~i~~Gmnv 78 (398)
.+.|+++.||+.|.+|
T Consensus 13 g~~e~v~~Ll~~gadv 28 (30)
T PF13606_consen 13 GNIEIVKYLLEHGADV 28 (30)
T ss_pred CCHHHHHHHHHcCCCC
Confidence 5789999999999886
No 437
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=22.38 E-value=3.6e+02 Score=28.25 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=52.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhh--
Q psy259 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKY-- 302 (398)
Q Consensus 225 ~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSky-- 302 (398)
.|.+|.+.++-+++-+.+.-+...+. ... .+ .......-+..+++.+.+.+.++||++..++.++..+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----vv~-~~-~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~~~~~~~~ 85 (452)
T cd00578 13 YGEELLEQVEEYAREVADLLNELPVE-----VVD-KP-EVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAKMWIAGLS 85 (452)
T ss_pred cChhHHHHHHHHHHHHHHHHhcCCce-----EEe-cC-cccCCHHHHHHHHHHHhhcCCcEEEEcccccccHHHHHHHHH
Confidence 67888888877776666553322111 100 11 1121223344555666666899999999999999877664
Q ss_pred CCCCCEEEEeCCh
Q psy259 303 RPRCPIISVTRFP 315 (398)
Q Consensus 303 RP~~PIIAVT~n~ 315 (398)
..+.|++-+....
T Consensus 86 ~~~~Pvll~a~~~ 98 (452)
T cd00578 86 ELRKPVLLLATQF 98 (452)
T ss_pred hcCCCEEEEeCCC
Confidence 5789999887544
No 438
>PRK06721 threonine synthase; Reviewed
Probab=22.36 E-value=6.2e+02 Score=25.60 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=10.4
Q ss_pred HHHHHHHcCCCCCCCeEEEEecc
Q psy259 351 GIKYGRDRKFLNQGDPVIVVTGW 373 (398)
Q Consensus 351 ai~~ake~Glik~GD~VVVvsG~ 373 (398)
+.+...+.+ ..-|.||+-.|.
T Consensus 166 ~~Ei~eq~~--~~~D~ivv~vG~ 186 (352)
T PRK06721 166 AFEICDQLQ--RAPDVLAIPVGN 186 (352)
T ss_pred HHHHHHHhC--CCCCEEEEeCCc
Confidence 444444433 134777766553
No 439
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=22.33 E-value=7.3e+02 Score=25.56 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHH-HHHHHHHHHHHhhhh
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECV-RAMHNTCKEAEAAIW 248 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV-~~m~~I~~~aE~~~~ 248 (398)
.+...|++.|.++.+. |-....| + +-..+...-..||+.+...+ ..|.|. +++ +.+..++.+.+...|
T Consensus 113 alA~~a~~~Gl~~~Iv------~p~~~~~-~-~~~~~~~~~~~GA~Vv~v~~--~~~~~~-~a~~~~~~~~~~~~~~~~y 181 (385)
T TIGR00263 113 ATATAAALLGLDCEVY------MGAEDVE-R-QKPNVFRMELLGAKVIPVTS--GSGTLK-DAVNEALRDWVTSVDDTHY 181 (385)
T ss_pred HHHHHHHHcCCCEEEE------ecCCccc-c-cchHHHHHHHcCCEEEEECC--CCCCHH-HHHHHHHHHHHHhcCCceE
Confidence 3566899999999984 1111011 1 11345567778999888743 223333 343 222222222122111
Q ss_pred hhHHHHHHhhcCCCCC-C-hHHHHHHHHHHHHHhc------CCcEEEEECCCchHHHHHHh-h--CCCCCEEEEeCCh
Q psy259 249 HTKLLTELKSMLPLPI-D-SAHSVAIAAVEAASKV------FAGAIVVLTTTGTSARLISK-Y--RPRCPIISVTRFP 315 (398)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~-~~~~ia~aav~~A~~~------~A~aIIv~T~SG~tA~~iSk-y--RP~~PIIAVT~n~ 315 (398)
....+ ..+.+. + ..+.-..-+.++..++ ..+.||+.+=+|.++.-+++ + .|.+.||+|-+..
T Consensus 182 ~~~~~-----~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~~~~~~iigVe~~g 254 (385)
T TIGR00263 182 VLGSA-----VGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFIDDPSVQLIGVEAGG 254 (385)
T ss_pred EeCCc-----CCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhhCCCCeEEEEEeCC
Confidence 10000 000111 0 1111111233444442 36899999999999877765 3 6999999999865
No 440
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.21 E-value=2.5e+02 Score=27.94 Aligned_cols=106 Identities=15% Similarity=0.294 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcccccc----cCCCCCC---CCC-CCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEeec----C
Q psy259 64 AVDMLEKIIETESNSDE----CSEKPRE---CPS-EPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIE----N 131 (398)
Q Consensus 64 ~~e~l~~~i~~Gmnvr~----~~~~~~p---gp~-~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE----~ 131 (398)
+.|.++.|+++|.++-+ ||. | ||+ ..=.++--++-+-++++.++=+. +.+.+.+++|+-+.= -
T Consensus 33 s~e~i~~L~~~GaD~iELGvPfSD---PvADGP~Iq~A~~rAL~~g~t~~~~lel~~~--~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 33 SLEIIKTLVEAGADILELGVPFSD---PVADGPTIQAAHLRALAAGVTLEDTLELVEE--IRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred HHHHHHHHHhCCCCEEEecCCCCC---cCccCHHHHHHHHHHHHCCCCHHHHHHHHHH--HHhcCCCCCEEEEEeccHHH
Q ss_pred hHHHhcHHHHHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 132 HQGVKNLDEIIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 132 ~~~v~n~deIl~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
..|+++|=+-++. .||++|. ++|+|.- ..+.+.|+++|.-.|.
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivp------DLP~ee~----~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVP------DLPPEES----DELLKAAEKHGIDPIF 152 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeC------CCChHHH----HHHHHHHHHcCCcEEE
No 441
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.16 E-value=3.5e+02 Score=25.12 Aligned_cols=68 Identities=9% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChH-HHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEE
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQ-GVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVI 183 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~-~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi 183 (398)
-+..+.+. +.+.|.++.+..--++.+ -.+.++.++.. .|||++...|- +.+ ...++.+.+.|+|++
T Consensus 17 ~~~~i~~~--~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~------~~~----~~~i~~~~~~~iPvV 84 (282)
T cd06318 17 LTEAAKAH--AKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDP------EGL----VPAVAAAKAAGVPVV 84 (282)
T ss_pred HHHHHHHH--HHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCc------cch----HHHHHHHHHCCCCEE
Confidence 34455566 666666654432212222 23456666665 89999985431 111 124577788999999
Q ss_pred Ee
Q psy259 184 CA 185 (398)
Q Consensus 184 ~A 185 (398)
+.
T Consensus 85 ~~ 86 (282)
T cd06318 85 VV 86 (282)
T ss_pred Ee
Confidence 75
No 442
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=22.12 E-value=1e+02 Score=27.24 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=40.0
Q ss_pred HHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHH-----HHHHHHHHHcCCC
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQ-----KQMIAKCNKVGKP 181 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~q-----k~ii~~c~~~gkp 181 (398)
+.+.|+. +.+.|-++..+--.+...+ .+.+.|..+|+|+++=||= ..+-..- ...|+...+.|++
T Consensus 2 ~~~~~~~--f~~~g~~v~~l~~~~~~~~--~~~~~i~~ad~I~~~GG~~------~~l~~~l~~t~l~~~i~~~~~~G~v 71 (154)
T PF03575_consen 2 VEKFRKA--FRKLGFEVDQLDLSDRNDA--DILEAIREADAIFLGGGDT------FRLLRQLKETGLDEAIREAYRKGGV 71 (154)
T ss_dssp HHHHHHH--HHHCT-EEEECCCTSCGHH--HHHHHHHHSSEEEE--S-H------HHHHHHHHHTTHHHHHHHHHHTTSE
T ss_pred HHHHHHH--HHHCCCEEEEEeccCCChH--HHHHHHHhCCEEEECCCCH------HHHHHHHHhCCHHHHHHHHHHCCCE
Confidence 3567777 7777766555555553333 6777778899999997752 2222221 2466666688877
Q ss_pred EEE
Q psy259 182 VIC 184 (398)
Q Consensus 182 vi~ 184 (398)
++-
T Consensus 72 i~G 74 (154)
T PF03575_consen 72 IIG 74 (154)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 443
>PRK07411 hypothetical protein; Validated
Probab=22.06 E-value=3.2e+02 Score=28.27 Aligned_cols=118 Identities=11% Similarity=0.133 Sum_probs=65.2
Q ss_pred ccccceeEEEeCCCCCCHHHHHHHHHhcccc-cccCCCCCCCCCCCCCCCCCCCccc-HHH-----HHHHHHHhhchhcC
Q psy259 48 YVRLTGIICTIGPASVAVDMLEKIIETESNS-DECSEKPRECPSEPEPPHCKEPNLY-ESN-----VRLIEKLMATGEQG 120 (398)
Q Consensus 48 ~~r~t~Iictigp~~~~~e~l~~~i~~Gmnv-r~~~~~~~pgp~~~~~~k~~~~~~~-vdd-----V~~ir~~~~l~~~~ 120 (398)
..+++++.. +|=-.---+.++.|..+|.-- .-+..+ .+-...=...++| .+| +..+++. |.+.+
T Consensus 35 ~L~~~~Vli-vG~GGlG~~va~~La~~Gvg~l~lvD~D------~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~--l~~~n 105 (390)
T PRK07411 35 RLKAASVLC-IGTGGLGSPLLLYLAAAGIGRIGIVDFD------VVDSSNLQRQVIHGTSWVGKPKIESAKNR--ILEIN 105 (390)
T ss_pred HHhcCcEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC------EecccccCcCcccChHHCCCcHHHHHHHH--HHHHC
Confidence 444444443 455455566788888888321 001000 0000001123333 222 2344444 55557
Q ss_pred CcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 121 KHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 121 ~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
..++|.+--+.... +|.++++...|.|+-+-.++ .....+-+.|.+.+||.+.+
T Consensus 106 p~v~v~~~~~~~~~-~~~~~~~~~~D~Vvd~~d~~----------~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 106 PYCQVDLYETRLSS-ENALDILAPYDVVVDGTDNF----------PTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred CCCeEEEEecccCH-HhHHHHHhCCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 77776665443332 57788889999999885543 23345678899999999865
No 444
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=22.03 E-value=3e+02 Score=28.50 Aligned_cols=176 Identities=19% Similarity=0.209 Sum_probs=100.9
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcC
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKK 195 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~ 195 (398)
+...++......+|.+++-.+...+.....|-++|---|. --||.|.+ |++..+..+-+-+
T Consensus 60 ~~~~~~~~~~~v~i~~~~~e~~a~~~~~~~~~viv~~~dW-~iIPlEnl-------IA~~~~~~~l~a~----------- 120 (344)
T PRK02290 60 ISGSAGEDGAYVEIRDKEDEEFAAELAKEVDYVIVEGRDW-TIIPLENL-------IADLGQSGKIIAG----------- 120 (344)
T ss_pred hcccCCceEEEEEECCHHHHHHHHHhhccCCEEEEECCCC-cEecHHHH-------HhhhcCCceEEEE-----------
Confidence 3445667888889999999999999888888888865554 44688885 4444344443332
Q ss_pred CCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHH-HHhhhhhh---------------------HHH
Q psy259 196 PRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE-AEAAIWHT---------------------KLL 253 (398)
Q Consensus 196 ~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~-aE~~~~~~---------------------~~~ 253 (398)
.-+-.|+-=...+..-|+|+|+|..+. | ..++-+...+.+ .|. +.-. .++
T Consensus 121 -v~~~~eA~~a~~~LE~G~dGVvl~~~d-----~-~ei~~~~~~~~~~~~~-l~L~~a~Vt~V~~vG~GdRVCVDtcsll 192 (344)
T PRK02290 121 -VADAEEAKLALEILEKGVDGVLLDPDD-----P-NEIKAIVALIEEAREK-LELVPATVTRVEPVGMGDRVCVDTCSLM 192 (344)
T ss_pred -eCCHHHHHHHHHHhccCCCeEEECCCC-----H-HHHHHHHHHHhccCCc-ceeEEEEEEEEEEcCCccEEEEEccccC
Confidence 233345555578889999999998763 3 344555555543 111 0000 000
Q ss_pred HHHhh-cC-CCCCC----hHHHHH-HHHHHHHHhcCCcEEEEECCC-chHHHHHHhhCCCCCEEEEeCChhhh
Q psy259 254 TELKS-ML-PLPID----SAHSVA-IAAVEAASKVFAGAIVVLTTT-GTSARLISKYRPRCPIISVTRFPQVA 318 (398)
Q Consensus 254 ~~~~~-~~-~~~~~----~~~~ia-~aav~~A~~~~A~aIIv~T~S-G~tA~~iSkyRP~~PIIAVT~n~~ta 318 (398)
+.-.. +. ..... ..|+.- --.....|..||.+.=.++.. |...++||-.+..-.|++|-.+-++.
T Consensus 193 ~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVhaYv~~pgg~T~YLsEL~sG~eVlvVd~~G~tR 265 (344)
T PRK02290 193 EEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRVNAGAVHAYVRVPGDKTRYLSELRSGDEVLVVDADGNTR 265 (344)
T ss_pred CCCceEEEcccCCcEEEEecccccCCCccCCCeeEecCcceeEEEcCCCcchhhHhhcCCCEEEEEeCCCCEE
Confidence 00000 00 00000 000000 000113355678877666655 66667889999999999998776553
No 445
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=21.97 E-value=96 Score=29.89 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=25.1
Q ss_pred CCcEEEEECCCchHHHH-----HHhhCCCCCEEEEeCCh
Q psy259 282 FAGAIVVLTTTGTSARL-----ISKYRPRCPIISVTRFP 315 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~-----iSkyRP~~PIIAVT~n~ 315 (398)
.-+.+|++|.+|.+... .+|- -.+|||++|++.
T Consensus 175 ~~Dv~I~iS~sg~~~~~~~~~~~ak~-~ga~iI~IT~~~ 212 (278)
T PRK11557 175 PDDLLLAISYSGERRELNLAADEALR-VGAKVLAITGFT 212 (278)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 45789999999988743 3344 369999999974
No 446
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.93 E-value=4e+02 Score=27.25 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=64.0
Q ss_pred CchhhhhHHHHHHhCCcEEEecCccC-------CCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHH
Q psy259 199 TRAEISDVANAVLDGADCVMLSGETA-------KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVA 271 (398)
Q Consensus 199 traEvsDVanav~dG~D~vmLS~ETA-------~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia 271 (398)
.|+-..||-.|+..|+|.|.+..-++ .|+=+-|+++.+...++.+.+.-..-. |. . ...........
T Consensus 71 ~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~-~~-~----ed~~r~~~~~l 144 (365)
T TIGR02660 71 CRARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS-VG-G----EDASRADPDFL 144 (365)
T ss_pred cCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE-Ee-e----cCCCCCCHHHH
Confidence 35556789999999999988865443 566678888888888877765321111 11 0 00111112333
Q ss_pred HHHHHHHHhcCCcEEEEECCCchH-----HHHHHhhCCC--CCEEEEeCC
Q psy259 272 IAAVEAASKVFAGAIVVLTTTGTS-----ARLISKYRPR--CPIISVTRF 314 (398)
Q Consensus 272 ~aav~~A~~~~A~aIIv~T~SG~t-----A~~iSkyRP~--~PIIAVT~n 314 (398)
...++.+.+.+++.|.+.-+.|.. +.++++.|.. +||=.=++|
T Consensus 145 ~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~HN 194 (365)
T TIGR02660 145 VELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMHAHN 194 (365)
T ss_pred HHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 445556667889987766666643 3455555543 554444443
No 447
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=21.93 E-value=2.6e+02 Score=25.93 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=40.7
Q ss_pred HHHHHHHHhhchhc---CCcc--cEE-EeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHc
Q psy259 106 NVRLIEKLMATGEQ---GKHI--KII-AKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKV 178 (398)
Q Consensus 106 dV~~ir~~~~l~~~---~~~~--~ii-aKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~ 178 (398)
-+..+.+. +.+. |..+ .+. ++-+.....+.++.++.. .|||++...|. +.+ ...+..+++.
T Consensus 17 ~~~~i~~~--~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~------~~~----~~~l~~~~~~ 84 (272)
T cd06300 17 MLDEFKAQ--AKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASP------TAL----NPVIEEACEA 84 (272)
T ss_pred HHHHHHHH--HHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh------hhh----HHHHHHHHHC
Confidence 34556665 6555 6533 332 232333455677776664 89999986542 111 2245677889
Q ss_pred CCCEEEee
Q psy259 179 GKPVICAT 186 (398)
Q Consensus 179 gkpvi~AT 186 (398)
|.|+++--
T Consensus 85 ~iPvv~~~ 92 (272)
T cd06300 85 GIPVVSFD 92 (272)
T ss_pred CCeEEEEe
Confidence 99999843
No 448
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=21.89 E-value=90 Score=19.10 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=13.4
Q ss_pred CCCCCeEEEEeccCCC
Q psy259 361 LNQGDPVIVVTGWKKG 376 (398)
Q Consensus 361 ik~GD~VVVvsG~~~g 376 (398)
+++||.|.++.|...|
T Consensus 2 ~~~G~~V~I~~G~~~g 17 (28)
T smart00739 2 FEVGDTVRVIAGPFKG 17 (28)
T ss_pred CCCCCEEEEeECCCCC
Confidence 5789999999998655
No 449
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=21.79 E-value=1.3e+02 Score=31.31 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=44.9
Q ss_pred cEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 124 KIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 124 ~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
.+.+-||-.--.-+||+-++-+|-|+-+=|=+=-....-|+|. .+.+.|+++||||++
T Consensus 263 ~l~~G~d~v~~~~~l~~~l~~ADlVITGEG~~D~Qtl~GK~p~---~Va~~A~~~~vPvia 320 (375)
T TIGR00045 263 RLKPGIDLVLELLDLEQKIKDADLVITGEGRLDRQSLMGKAPV---GVAKRAKKYGVPVIA 320 (375)
T ss_pred EEccHHHHHHHhhCHHHHhcCCCEEEECCCcccccccCCchHH---HHHHHHHHhCCeEEE
Confidence 3555555555667899999999999999997766666677664 466789999999997
No 450
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=21.77 E-value=92 Score=28.94 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=40.6
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHH--HHHHHHHHHHHcCCCEE
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFL--AQKQMIAKCNKVGKPVI 183 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~--~qk~ii~~c~~~gkpvi 183 (398)
.....++. +.+.|-+...+--+++ ..-+.+.+.|..+|+|+++=||=..-+ ..+.. ..+.|.+.++ .|+|++
T Consensus 45 ~~~~~~~~--~~~lG~~~~~~~~~~~-~~~~~~~~~l~~ad~I~~~GG~~~~~~--~~l~~t~~~~~i~~~~~-~G~v~~ 118 (210)
T cd03129 45 YGEEYRAA--FERLGVEVVHLLLIDT-ANDPDVVARLLEADGIFVGGGNQLRLL--SVLRETPLLDAILKRVA-RGVVIG 118 (210)
T ss_pred HHHHHHHH--HHHcCCceEEEeccCC-CCCHHHHHHHhhCCEEEEcCCcHHHHH--HHHHhCChHHHHHHHHH-cCCeEE
Confidence 34667777 6666665555544443 222455667788999999987641111 11111 2334555555 677766
Q ss_pred E
Q psy259 184 C 184 (398)
Q Consensus 184 ~ 184 (398)
-
T Consensus 119 G 119 (210)
T cd03129 119 G 119 (210)
T ss_pred E
Confidence 3
No 451
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=21.64 E-value=1.1e+02 Score=29.97 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=58.1
Q ss_pred HHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh--cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 109 LIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 109 ~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~--sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
.+|+. |.....-+.....+-++. +-||+.. -|.|+|.- |=+.-.+..+ ..++..|+..|.++++
T Consensus 9 ~lk~~--l~~g~~~~g~~~~~~sp~----~~e~~a~~G~D~v~iD~-----EHg~~~~~~~-~~~i~a~~~~g~~~lV-- 74 (256)
T PRK10558 9 KFKAA--LAAKQVQIGCWSALANPI----TTEVLGLAGFDWLVLDG-----EHAPNDVSTF-IPQLMALKGSASAPVV-- 74 (256)
T ss_pred HHHHH--HHcCCceEEEEEcCCCcH----HHHHHHhcCCCEEEEcc-----ccCCCCHHHH-HHHHHHHhhcCCCcEE--
Confidence 45555 543222345666666664 4456666 59999862 3333333333 3588899999999998
Q ss_pred hhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 187 QMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 187 QmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
|+...+-.++.+++..|+++||+.
T Consensus 75 ----------Rvp~~~~~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 75 ----------RVPTNEPVIIKRLLDIGFYNFLIP 98 (256)
T ss_pred ----------ECCCCCHHHHHHHhCCCCCeeeec
Confidence 444445678899999999999994
No 452
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=21.57 E-value=4.7e+02 Score=27.26 Aligned_cols=143 Identities=15% Similarity=0.207 Sum_probs=78.4
Q ss_pred CHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhchhcCCcccEEEeecC--hHHHhcHHHH
Q psy259 64 AVDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIEN--HQGVKNLDEI 141 (398)
Q Consensus 64 ~~e~l~~~i~~Gmnvr~~~~~~~pgp~~~~~~k~~~~~~~vddV~~ir~~~~l~~~~~~~~iiaKIE~--~~~v~n~deI 141 (398)
+++.|++|-++|..+-+++-. + .++...++++ -. ..++.++|-|-= .-| +..+
T Consensus 44 tv~Qi~~L~~aGceiVRvav~---------------~---~~~a~al~~I--~~--~~~iPlvADIHFd~~lA---l~a~ 98 (360)
T PRK00366 44 TVAQIKRLARAGCEIVRVAVP---------------D---MEAAAALPEI--KK--QLPVPLVADIHFDYRLA---LAAA 98 (360)
T ss_pred HHHHHHHHHHcCCCEEEEccC---------------C---HHHHHhHHHH--HH--cCCCCEEEecCCCHHHH---HHHH
Confidence 356788888899776443221 0 1122333333 11 126999997732 222 2333
Q ss_pred HHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee-------hhhHHhhcCCCCCc-hh--hhhHHHHHH
Q psy259 142 IAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT-------QMLESMIKKPRATR-AE--ISDVANAVL 211 (398)
Q Consensus 142 l~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT-------QmLeSMi~~~~Ptr-aE--vsDVanav~ 211 (398)
=.=+|+|-|.||.+| +...--+.++++|+++|+|+=+-. ++|+.- ..|.|.- .| ..-+.-.-.
T Consensus 99 ~~G~~~iRINPGNig------~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~y-g~~t~eamveSAl~~~~~le~ 171 (360)
T PRK00366 99 EAGADALRINPGNIG------KRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKY-GEPTPEALVESALRHAKILEE 171 (360)
T ss_pred HhCCCEEEECCCCCC------chHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHc-CCCCHHHHHHHHHHHHHHHHH
Confidence 223899999999883 333455789999999999985532 334332 1122210 00 022223334
Q ss_pred hCCcEEEecCccCCCCChHHHHHHHHHHHH
Q psy259 212 DGADCVMLSGETAKGDYPVECVRAMHNTCK 241 (398)
Q Consensus 212 dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~ 241 (398)
.|.|=+.+| .+-..|.++|+.=+.+.+
T Consensus 172 ~~f~~iviS---~KsS~v~~~i~ayrlla~ 198 (360)
T PRK00366 172 LGFDDIKIS---VKASDVQDLIAAYRLLAK 198 (360)
T ss_pred CCCCcEEEE---EEcCCHHHHHHHHHHHHh
Confidence 577777777 455556666665555543
No 453
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.46 E-value=87 Score=27.25 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=21.2
Q ss_pred CCcEEEEECCCchHHHHH-----HhhCCCCCEEEEe
Q psy259 282 FAGAIVVLTTTGTSARLI-----SKYRPRCPIISVT 312 (398)
Q Consensus 282 ~A~aIIv~T~SG~tA~~i-----SkyRP~~PIIAVT 312 (398)
.-+.+|++|.||+++..+ +|-| .+++|++|
T Consensus 103 ~gDvli~iS~SG~s~~vi~a~~~Ak~~-G~~vIalT 137 (138)
T PF13580_consen 103 PGDVLIVISNSGNSPNVIEAAEEAKER-GMKVIALT 137 (138)
T ss_dssp TT-EEEEEESSS-SHHHHHHHHHHHHT-T-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 457899999999997654 5555 78999887
No 454
>PRK06381 threonine synthase; Validated
Probab=21.45 E-value=5.1e+02 Score=25.56 Aligned_cols=67 Identities=13% Similarity=-0.004 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhh--CCCCCEEEEeCCh--hhhhhccccccceEEecC
Q psy259 266 SAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKY--RPRCPIISVTRFP--QVARQLHLHRSIIPLVYE 333 (398)
Q Consensus 266 ~~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSky--RP~~PIIAVT~n~--~taRqL~L~wGV~Pvl~~ 333 (398)
..+-.+...+..+.+.+.+.|++- ++|.++.-+|.+ +-..|.+.|.+.. ..-.++.-.+|..-++++
T Consensus 46 ~K~R~a~~~l~~a~~~g~~~lv~a-SsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~ 116 (319)
T PRK06381 46 QKDRIAEAHVRRAMRLGYSGITVG-TCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVD 116 (319)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcC
Confidence 334455566666666676666553 467777655543 1234444444431 122223334555544443
No 455
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=21.43 E-value=6.6e+02 Score=25.11 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=67.4
Q ss_pred CCcccEEEeecChHHHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhh----HHh--
Q psy259 120 GKHIKIIAKIENHQGVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQML----ESM-- 192 (398)
Q Consensus 120 ~~~~~iiaKIE~~~~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmL----eSM-- 192 (398)
+-.+.|.-....-.-++.+.+=++. -+-||+.- -.+|.++=...-|++.+.|+..|.+|=.==--+ +..
T Consensus 75 ~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDg----S~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~ 150 (288)
T TIGR00167 75 PYGVPVALHLDHGASEEDCAQAVKAGFSSVMIDG----SHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSV 150 (288)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccc
Confidence 3367888888886644444333333 68899984 456888888899999999999998873200000 000
Q ss_pred hc-CCCCCchhhhhHHHHHHh-CCcEEEecCccCCCCCh
Q psy259 193 IK-KPRATRAEISDVANAVLD-GADCVMLSGETAKGDYP 229 (398)
Q Consensus 193 i~-~~~PtraEvsDVanav~d-G~D~vmLS~ETA~G~yP 229 (398)
-. ...=|. ..+....+.. |+|++-.|--|+-|.|+
T Consensus 151 ~~~~~~~T~--peea~~Fv~~TgvD~LAvaiGt~HG~y~ 187 (288)
T TIGR00167 151 ADESALYTD--PEEAKEFVKLTGVDSLAAAIGNVHGVYK 187 (288)
T ss_pred ccccccCCC--HHHHHHHHhccCCcEEeeccCccccccC
Confidence 00 000111 1245666654 99999999999999995
No 456
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=21.42 E-value=8.6e+02 Score=24.63 Aligned_cols=105 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHhhchhcCCcccEEEee------cChHHHhcHHHHHHh----cCeeEE---cCCCCCCCCChhhHHHHHHHHHH
Q psy259 107 VRLIEKLMATGEQGKHIKIIAKI------ENHQGVKNLDEIIAE----ADGIMV---ARGDLGIEIPPWKVFLAQKQMIA 173 (398)
Q Consensus 107 V~~ir~~~~l~~~~~~~~iiaKI------E~~~~v~n~deIl~~----sDgimv---aRgDLg~e~~~~~v~~~qk~ii~ 173 (398)
+....+. +.+...+..|++-| .+..+.+.+-+.++. +|++=+ .+-.=+...... +..-.++++
T Consensus 121 ~~~~l~~--i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~--~~~~~~i~~ 196 (335)
T TIGR01036 121 ADVLVER--LKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQY--KAELRDLLT 196 (335)
T ss_pred HHHHHHH--HhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccC--HHHHHHHHH
Q ss_pred HHHHcC--------CCEEEeehhhHHhhcCCCCCchhhhhHHH-HHHhCCcEEEecCcc
Q psy259 174 KCNKVG--------KPVICATQMLESMIKKPRATRAEISDVAN-AVLDGADCVMLSGET 223 (398)
Q Consensus 174 ~c~~~g--------kpvi~ATQmLeSMi~~~~PtraEvsDVan-av~dG~D~vmLS~ET 223 (398)
.+++.- +|+++ --.|.-+..++.+++. +...|+|++.|..-+
T Consensus 197 ~V~~~~~~~~~~~~~Pv~v--------KLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 197 AVKQEQDGLRRVHRVPVLV--------KIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred HHHHHHHhhhhccCCceEE--------EeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
No 457
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=21.42 E-value=1.2e+02 Score=29.00 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=28.4
Q ss_pred CcEEEEECCCchHHHHHH---h-hCCCCCEEEEeCChhh--hhhc
Q psy259 283 AGAIVVLTTTGTSARLIS---K-YRPRCPIISVTRFPQV--ARQL 321 (398)
Q Consensus 283 A~aIIv~T~SG~tA~~iS---k-yRP~~PIIAVT~n~~t--aRqL 321 (398)
-+.+|.+|.||.|...+. + -|-..||||+|.++.- +|..
T Consensus 87 ~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~a 131 (202)
T COG0794 87 GDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAA 131 (202)
T ss_pred CCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhc
Confidence 478899999999986532 1 2447999999998853 4443
No 458
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=21.41 E-value=2.5e+02 Score=30.66 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=60.4
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHh----c----------------------CeeEEcCCCCCCCCChhhHHHHHH
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAE----A----------------------DGIMVARGDLGIEIPPWKVFLAQK 169 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~----s----------------------DgimvaRgDLg~e~~~~~v~~~qk 169 (398)
|+-....|++-..||+..|.-+++||+-+ + |.|+-.|..++++.| =+-...+
T Consensus 232 Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~~~~~~~~vlPdR~~v~m~~p--fm~aY~~ 309 (526)
T PF01274_consen 232 LGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKTFRNRPDFVLPDRKQVTMTQP--FMRAYED 309 (526)
T ss_dssp HTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHHTCCGCCBB---GGGGGCGSH--HHHHHHH
T ss_pred hCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHHhhhCCCccccccccccccCH--HHHHHHH
Confidence 55444579999999999999999999986 2 445555666555544 4567888
Q ss_pred HHHHHHHHcCCCEEEeehhhHHhhcCCCCCc--hhh---------hhHHHHHHhCCcEEEec
Q psy259 170 QMIAKCNKVGKPVICATQMLESMIKKPRATR--AEI---------SDVANAVLDGADCVMLS 220 (398)
Q Consensus 170 ~ii~~c~~~gkpvi~ATQmLeSMi~~~~Ptr--aEv---------sDVanav~dG~D~vmLS 220 (398)
..++.|++.|-..+.- |- .-.|.+ .+. .|=-.-+.+|+||-+.-
T Consensus 310 llv~tch~Rga~a~gG------ma-a~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg~WVa 364 (526)
T PF01274_consen 310 LLVRTCHRRGAHAMGG------MA-AFIPIGKDPWANPDAMAKVRADKEREAKAGFDGAWVA 364 (526)
T ss_dssp HHHHHHHHTT-HHHTT------CT-TTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SEEEES
T ss_pred HHHHHHhhcCCccccC------Cc-cccCCCCChhhhHHHHHHHHHHHHHHHhcCCCccccc
Confidence 9999999988655431 21 113333 122 23344578999998883
No 459
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=21.33 E-value=2.4e+02 Score=27.34 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=33.9
Q ss_pred hcHHHHHHhcCeeEEcCCCCCCC---------CC--hhhHHHHHHHHHHHHHHcCCCEEEe
Q psy259 136 KNLDEIIAEADGIMVARGDLGIE---------IP--PWKVFLAQKQMIAKCNKVGKPVICA 185 (398)
Q Consensus 136 ~n~deIl~~sDgimvaRgDLg~e---------~~--~~~v~~~qk~ii~~c~~~gkpvi~A 185 (398)
+.++++++..|||++.=|...+. -+ .+.-......+++.|.+.+||++--
T Consensus 53 ~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGI 113 (254)
T PRK11366 53 SLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAI 113 (254)
T ss_pred HHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEE
Confidence 45678888899999986532221 11 1222356678999999999999753
No 460
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=21.32 E-value=88 Score=29.68 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=48.8
Q ss_pred CCCCchh-----hhhHHHHHHhCCcEEEecCcc---CCCCChHHHHHHHHHHHHHHHhhhhhh---HHHHHHhhcCCCCC
Q psy259 196 PRATRAE-----ISDVANAVLDGADCVMLSGET---AKGDYPVECVRAMHNTCKEAEAAIWHT---KLLTELKSMLPLPI 264 (398)
Q Consensus 196 ~~PtraE-----vsDVanav~dG~D~vmLS~ET---A~G~yP~eaV~~m~~I~~~aE~~~~~~---~~~~~~~~~~~~~~ 264 (398)
..++... +.++..|+.+|||+|-+.-=. ..|+ =-+..+.+.+++++++...-.- .+..... .. .
T Consensus 67 ~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~--~~--~ 141 (236)
T PF01791_consen 67 TSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILEPYLRGEE--VA--D 141 (236)
T ss_dssp SSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEEECECHHH--BS--S
T ss_pred CCccccccccchHHHHHHHHHcCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEEEecCchh--hc--c
Confidence 3455666 899999999999999774322 2222 2456677777777776431000 0000000 00 0
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEECCCc
Q psy259 265 DSAHSVAIAAVEAASKVFAGAIVVLTTTG 293 (398)
Q Consensus 265 ~~~~~ia~aav~~A~~~~A~aIIv~T~SG 293 (398)
+........+++++.+++|+.|= |.+|
T Consensus 142 ~~~~~~I~~a~ria~e~GaD~vK--t~tg 168 (236)
T PF01791_consen 142 EKKPDLIARAARIAAELGADFVK--TSTG 168 (236)
T ss_dssp TTHHHHHHHHHHHHHHTT-SEEE--EE-S
T ss_pred cccHHHHHHHHHHHHHhCCCEEE--ecCC
Confidence 01223445677788889999554 5555
No 461
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=21.19 E-value=1.9e+02 Score=29.33 Aligned_cols=51 Identities=22% Similarity=0.340 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHc-CCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHh-CCcEEEecCccCCCC
Q psy259 167 AQKQMIAKCNKV-GKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLSGETAKGD 227 (398)
Q Consensus 167 ~qk~ii~~c~~~-gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~d-G~D~vmLS~ETA~G~ 227 (398)
.-.++++.+++. -+||++ +-.|+..++.|+|.++.+ |+|++.++.=|-.|.
T Consensus 148 ~l~~l~~~vk~~~~~Pv~v----------Kl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~ 200 (310)
T COG0167 148 LLEKLLEAVKAATKVPVFV----------KLAPNITDIDEIAKAAEEAGADGLIAINTTKSGM 200 (310)
T ss_pred HHHHHHHHHHhcccCceEE----------EeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccc
Confidence 445677777654 589986 567799999999988766 599999987555443
No 462
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=21.15 E-value=2.6e+02 Score=22.71 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCcEEEEECCC---------chHHHHHHhhCCCCCEEEE
Q psy259 270 VAIAAVEAASKVFAGAIVVLTTT---------GTSARLISKYRPRCPIISV 311 (398)
Q Consensus 270 ia~aav~~A~~~~A~aIIv~T~S---------G~tA~~iSkyRP~~PIIAV 311 (398)
.+.+.++.+.+.+++.||+-+.. |.++..+.+ +.+||++.+
T Consensus 82 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~-~~~~pvlvv 131 (132)
T cd01988 82 IASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLE-SAPCDVAVV 131 (132)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHh-cCCCCEEEe
Confidence 44555677788899988877653 345555554 445999865
No 463
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=21.11 E-value=3.2e+02 Score=26.40 Aligned_cols=68 Identities=10% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChH-HHhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEE
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQ-GVKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVI 183 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~-~v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi 183 (398)
-...+.+. +.+.|-++.+..-=.+.+ -.+.++.++.. .|||++.+.|- . .....++.+.++|.||+
T Consensus 16 ~~~~i~~~--a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~------~----~~~~~l~~~~~~~iPvV 83 (302)
T TIGR02634 16 DRDIFVAA--AESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNG------Q----VLSNAVQEAKDEGIKVV 83 (302)
T ss_pred HHHHHHHH--HHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh------h----HHHHHHHHHHHCCCeEE
Confidence 34455555 666666665543222222 23445555555 89999985431 1 11245677889999999
Q ss_pred Ee
Q psy259 184 CA 185 (398)
Q Consensus 184 ~A 185 (398)
+.
T Consensus 84 ~~ 85 (302)
T TIGR02634 84 AY 85 (302)
T ss_pred Ee
Confidence 73
No 464
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=21.10 E-value=1.9e+02 Score=27.81 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=34.3
Q ss_pred HHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhh
Q psy259 134 GVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQML 189 (398)
Q Consensus 134 ~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmL 189 (398)
..+.+.++++.+|.+.++.|-| .+........+.+.|++.|+||++-.+++
T Consensus 39 ~~e~~~~~l~~~d~vvi~~G~l-----~~~~~~~i~~~~~~~~~~~~pvVlDp~~~ 89 (242)
T cd01170 39 APEEVEELAKIAGALVINIGTL-----TSEQIEAMLKAGKAANQLGKPVVLDPVGV 89 (242)
T ss_pred CHHHHHHHHHHcCcEEEeCCCC-----ChHHHHHHHHHHHHHHhcCCCEEEccccc
Confidence 3556778888899999977644 22222333344557889999999855554
No 465
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.04 E-value=2.4e+02 Score=30.09 Aligned_cols=74 Identities=23% Similarity=0.260 Sum_probs=43.4
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHh---------cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAE---------ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCN 176 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~---------sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~ 176 (398)
-+++|... +.+.-..+.|+.-==..+|-+--.||++. .|.++||||-=+ .|++...=.+++.++.
T Consensus 148 airDIl~~--~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS----iEDLW~FNdE~vaRAi 221 (440)
T COG1570 148 ALRDILHT--LSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS----IEDLWAFNDEIVARAI 221 (440)
T ss_pred HHHHHHHH--HHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch----HHHHhccChHHHHHHH
Confidence 34555555 54444445555432333444444555543 799999999432 4677666666665555
Q ss_pred -HcCCCEEEe
Q psy259 177 -KVGKPVICA 185 (398)
Q Consensus 177 -~~gkpvi~A 185 (398)
....|||.|
T Consensus 222 ~~s~iPvISA 231 (440)
T COG1570 222 AASRIPVISA 231 (440)
T ss_pred HhCCCCeEee
Confidence 567899875
No 466
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=21.03 E-value=8.1e+02 Score=25.68 Aligned_cols=103 Identities=19% Similarity=0.177 Sum_probs=57.3
Q ss_pred chhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCC-CCC-CCCChhhHHHHHHHHHHHHHHc--CCCEEEeehhhHH
Q psy259 116 TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARG-DLG-IEIPPWKVFLAQKQMIAKCNKV--GKPVICATQMLES 191 (398)
Q Consensus 116 l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRg-DLg-~e~~~~~v~~~qk~ii~~c~~~--gkpvi~ATQmLeS 191 (398)
..+.|..+.+ -.+.-...++.++++....|.|++.+| |=+ ..-+.+ -++..++. +.++.++
T Consensus 272 akk~GikvgV-D~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~--------kI~~ikk~~~~~~I~Vd------ 336 (391)
T PRK13307 272 AQKTGIYSIL-DMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWG--------NIKEIKKAGGKILVAVA------ 336 (391)
T ss_pred HHHcCCEEEE-EEcCCCCHHHHHHHhhCCCCEEEEccccCCCcccchHH--------HHHHHHHhCCCCcEEEE------
Confidence 4444533333 134333456777777667899998872 222 111111 22333332 4466664
Q ss_pred hhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHH
Q psy259 192 MIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTC 240 (398)
Q Consensus 192 Mi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~ 240 (398)
+-=+ ..++..++..|+|.+.+.+---.-+-|.++++.+.+.+
T Consensus 337 ----GGI~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 337 ----GGVR---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred ----CCcC---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 2222 23467788889999888543223356999988877655
No 467
>PLN02569 threonine synthase
Probab=21.00 E-value=8.2e+02 Score=26.30 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEec
Q psy259 348 VAHGIKYGRDRKFLNQGDPVIVVTG 372 (398)
Q Consensus 348 I~~ai~~ake~Glik~GD~VVVvsG 372 (398)
-..+.+...+.|+ +.-|.||+=.|
T Consensus 275 kT~a~EI~eQl~~-~~pD~VvvPvG 298 (484)
T PLN02569 275 KTAAIEILQQFDW-EVPDWVIVPGG 298 (484)
T ss_pred HHHHHHHHHHcCC-CCCCEEEEeCC
Confidence 4456677777665 33576765444
No 468
>PRK11096 ansB L-asparaginase II; Provisional
Probab=20.96 E-value=1e+02 Score=31.65 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=33.3
Q ss_pred cHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhh
Q psy259 137 NLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMI 193 (398)
Q Consensus 137 n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi 193 (398)
-++.+++. .+||.++=--.|- +|. .....++++.+.|+||+++||-.+-.+
T Consensus 248 ~l~~~l~~~~~GiVl~g~G~Gn-~~~-----~~~~~l~~a~~~GipVV~~Sqc~~G~v 299 (347)
T PRK11096 248 PAKALVDAGYDGIVSAGVGNGN-LYK-----TVFDTLATAAKNGVAVVRSSRVPTGAT 299 (347)
T ss_pred HHHHHHhccCCEEEEEeECCCC-CCH-----HHHHHHHHHHHCCCEEEEeCCCCCCCc
Confidence 35555655 7999987222221 232 234566778899999999999877543
No 469
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.96 E-value=6.6e+02 Score=23.11 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=21.4
Q ss_pred HcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHh-CCcEEEec
Q psy259 177 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLD-GADCVMLS 220 (398)
Q Consensus 177 ~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~d-G~D~vmLS 220 (398)
..+.||+.. ...-+ ..|+..++.. |+|+||+.
T Consensus 181 ~~~ipvi~~---------Ggi~~---~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 181 AVSIPVIAN---------GDIFS---LEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCCCeEEEe---------CCCCC---HHHHHHHHHhcCCCEEEEc
Confidence 456888863 22223 3466777776 89999995
No 470
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.86 E-value=6.2e+02 Score=25.62 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=49.2
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecC----------hHHHhcHHHHHHh--cCeeEEcCCCCCCC------CCh-hhHHH
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIEN----------HQGVKNLDEIIAE--ADGIMVARGDLGIE------IPP-WKVFL 166 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~----------~~~v~n~deIl~~--sDgimvaRgDLg~e------~~~-~~v~~ 166 (398)
=|+.||+. + |.+..|.-||-- .++++-+..+-+. .|.|-|..|-..-. .+. ..-..
T Consensus 197 iv~~ir~~--v---g~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 271 (343)
T cd04734 197 VLAAVRAA--V---GPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG 271 (343)
T ss_pred HHHHHHHH--c---CCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc
Confidence 44566666 4 445555555532 2344433444443 58888865543211 111 00011
Q ss_pred HHHHHHHHHHH-cCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhC-CcEEEec
Q psy259 167 AQKQMIAKCNK-VGKPVICATQMLESMIKKPRATRAEISDVANAVLDG-ADCVMLS 220 (398)
Q Consensus 167 ~qk~ii~~c~~-~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG-~D~vmLS 220 (398)
.+...++..++ .++|||+... .-|. .|.-.++.+| +|+||+.
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~---------i~~~---~~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 272 PFLPLAARIKQAVDLPVFHAGR---------IRDP---AEAEQALAAGHADMVGMT 315 (343)
T ss_pred hhHHHHHHHHHHcCCCEEeeCC---------CCCH---HHHHHHHHcCCCCeeeec
Confidence 22334444443 4789997432 2233 3445666665 9999995
No 471
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.85 E-value=2.6e+02 Score=27.67 Aligned_cols=79 Identities=27% Similarity=0.322 Sum_probs=47.3
Q ss_pred cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccC
Q psy259 145 ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224 (398)
Q Consensus 145 sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA 224 (398)
+-.||---.-.|--.|+..-. ..+.|++ ++..|||+ ....=+ -||.+.|...|+|+|++..--|
T Consensus 152 caavMPl~aPIGSg~G~~n~~-~l~iiie---~a~VPviV---------DAGiG~---pSdAa~aMElG~DaVL~NTAiA 215 (262)
T COG2022 152 CAAVMPLGAPIGSGLGLQNPY-NLEIIIE---EADVPVIV---------DAGIGT---PSDAAQAMELGADAVLLNTAIA 215 (262)
T ss_pred ceEeccccccccCCcCcCCHH-HHHHHHH---hCCCCEEE---------eCCCCC---hhHHHHHHhcccceeehhhHhh
Confidence 455664333334444433322 2333443 44899998 332222 2566999999999999987777
Q ss_pred CCCChHHHHHHHHHH
Q psy259 225 KGDYPVECVRAMHNT 239 (398)
Q Consensus 225 ~G~yP~eaV~~m~~I 239 (398)
.-+.|+.--+.|..-
T Consensus 216 ~A~DPv~MA~Af~~A 230 (262)
T COG2022 216 RAKDPVAMARAFALA 230 (262)
T ss_pred ccCChHHHHHHHHHH
Confidence 788887655555433
No 472
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=20.82 E-value=2.1e+02 Score=28.22 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=41.4
Q ss_pred cccEEEe-ecChHHHhcHHHHHHhcCeeEEcCC--------------CCCCCCChhhHHHHHHHHHHHHHHcCCCEEE--
Q psy259 122 HIKIIAK-IENHQGVKNLDEIIAEADGIMVARG--------------DLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC-- 184 (398)
Q Consensus 122 ~~~iiaK-IE~~~~v~n~deIl~~sDgimvaRg--------------DLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~-- 184 (398)
.+.++-. .+. -+++++++...||+++.=| +++.--|.- ...-.-+|++|-+.|||+.-
T Consensus 40 g~pillP~~~d---~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~R--D~~E~aLi~~ALe~~iPILgIC 114 (243)
T COG2071 40 GIPILLPALED---PEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPER--DAFELALIRAALERGIPILGIC 114 (243)
T ss_pred CceEEecCCCC---HHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccc--cHHHHHHHHHHHHcCCCEEEEc
Confidence 3444444 433 3578889999999999855 111111112 24555699999999999864
Q ss_pred -eehhhHHh
Q psy259 185 -ATQMLESM 192 (398)
Q Consensus 185 -ATQmLeSM 192 (398)
-+|+|.-.
T Consensus 115 RG~QllNVa 123 (243)
T COG2071 115 RGLQLLNVA 123 (243)
T ss_pred cchHHHHHH
Confidence 25666544
No 473
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=20.81 E-value=1.1e+02 Score=30.92 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=32.0
Q ss_pred HHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhh
Q psy259 138 LDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMI 193 (398)
Q Consensus 138 ~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi 193 (398)
++..++. .+||.+.= +|.=.+|......++++.+.|.||+++||-.+-.+
T Consensus 226 l~~~~~~g~~GiVl~~------~G~Gn~p~~~~~~l~~a~~~gi~VV~~Sq~~~G~v 276 (323)
T cd00411 226 VRAFLRAGYKGIVLAG------YGAGNVPTDLIDELEEAAERGVVVVNSTQCEEGAV 276 (323)
T ss_pred HHHHHhCCCCEEEEEe------ECCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCcc
Confidence 5555655 79999861 12222222345566678889999999999755443
No 474
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.68 E-value=61 Score=28.47 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHH-hcCCcEEEE-ECCCchHHHHHHhhCCCCCEEEEeCChhhhhhccccccceEEecC
Q psy259 265 DSAHSVAIAAVEAAS-KVFAGAIVV-LTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYE 333 (398)
Q Consensus 265 ~~~~~ia~aav~~A~-~~~A~aIIv-~T~SG~tA~~iSkyRP~~PIIAVT~n~~taRqL~L~wGV~Pvl~~ 333 (398)
+.++-+..+.+--.. ++++.|.+= --..+..-.++.+-.|++.||.+++.-.+.+.|.=.||-+|.+-.
T Consensus 39 ~~aD~~~~~ilGe~R~k~~~aa~a~v~~~a~~aI~rIr~IHPPAHiIVIs~r~dvy~el~~~fgkl~elkg 109 (125)
T COG1844 39 ELADEILSSILGEVRKKCKVAAVAEVEEPASKAIGRIRKIHPPAHIIVISPRHDVYKELLRLFGKLPELKG 109 (125)
T ss_pred hhHHHHHHHHHHHHhcccchhheeeecCccHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHhcccHhhcc
Confidence 344555554443333 344444432 334566667899999999999999999999999999999998743
No 475
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=20.61 E-value=3e+02 Score=25.89 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=55.3
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCCh------hhHHHHHHHHHHHHHHcC
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPP------WKVFLAQKQMIAKCNKVG 179 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~------~~v~~~qk~ii~~c~~~g 179 (398)
++.++-+. +.+.|.+..|.-+-+| .++.++++++..|.|+|= +++-|. +.+..-.+++-+...++|
T Consensus 93 ~~~~~i~~--ik~~g~k~GialnP~T--~~~~~~~~l~~vD~VlvM----sV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~ 164 (201)
T PF00834_consen 93 DPKETIKY--IKEAGIKAGIALNPET--PVEELEPYLDQVDMVLVM----SVEPGFGGQKFIPEVLEKIRELRKLIPENG 164 (201)
T ss_dssp THHHHHHH--HHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEEE----SS-TTTSSB--HGGHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHH--HHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEEE----EecCCCCcccccHHHHHHHHHHHHHHHhcC
Confidence 34444444 5666888888888887 688999999999999973 455443 444445555555556666
Q ss_pred CCEEEeehhhHHhhc-CCCCCchhhhhHHHHHHhCCcEEEec
Q psy259 180 KPVICATQMLESMIK-KPRATRAEISDVANAVLDGADCVMLS 220 (398)
Q Consensus 180 kpvi~ATQmLeSMi~-~~~PtraEvsDVanav~dG~D~vmLS 220 (398)
..+.+. +. .-.+. -+...+..|+|.+.+.
T Consensus 165 ~~~~I~-------vDGGI~~~-----~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 165 LDFEIE-------VDGGINEE-----NIKQLVEAGADIFVAG 194 (201)
T ss_dssp CGSEEE-------EESSESTT-----THHHHHHHT--EEEES
T ss_pred CceEEE-------EECCCCHH-----HHHHHHHcCCCEEEEC
Confidence 555541 12 11222 2345566799987764
No 476
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=20.58 E-value=2.5e+02 Score=25.62 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=39.0
Q ss_pred HHHHHHHHhhchhcCCcccEEEeecChHH-HhcHHHHHHh-cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEE
Q psy259 106 NVRLIEKLMATGEQGKHIKIIAKIENHQG-VKNLDEIIAE-ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVI 183 (398)
Q Consensus 106 dV~~ir~~~~l~~~~~~~~iiaKIE~~~~-v~n~deIl~~-sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi 183 (398)
=+..+++. +.+.|.++.++.--++.+. .+.++.++.. .|||++...|. +.+ .++.+++.|+|++
T Consensus 17 ~~~~i~~~--a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~----~~~--------~l~~~~~~~ipvV 82 (267)
T cd06283 17 VLKGIEDV--CRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGN----NKE--------LYQRLAKNGKPVV 82 (267)
T ss_pred HHHHHHHH--HHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCC----ChH--------HHHHHhcCCCCEE
Confidence 34566666 6666666554433233332 3445665554 89999976542 111 2566778999999
Q ss_pred Ee
Q psy259 184 CA 185 (398)
Q Consensus 184 ~A 185 (398)
+.
T Consensus 83 ~~ 84 (267)
T cd06283 83 LV 84 (267)
T ss_pred EE
Confidence 84
No 477
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=20.53 E-value=5.1e+02 Score=23.61 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=21.0
Q ss_pred HHHhcCCcEEEEECCCchHH---HHHHhhCCCCCEEEEe
Q psy259 277 AASKVFAGAIVVLTTTGTSA---RLISKYRPRCPIISVT 312 (398)
Q Consensus 277 ~A~~~~A~aIIv~T~SG~tA---~~iSkyRP~~PIIAVT 312 (398)
.|.+.+++.|-+|..+-... +.+.+.-|..|++|.-
T Consensus 112 ~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~G 150 (190)
T cd00452 112 QALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTG 150 (190)
T ss_pred HHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeC
Confidence 44567999887764332222 3334444677888774
No 478
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=20.48 E-value=5.3e+02 Score=26.14 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=33.2
Q ss_pred cCeeEEcCCCCCCCCChhhHHHHHHHHHHHHH-HcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhC-CcEEEec
Q psy259 145 ADGIMVARGDLGIEIPPWKVFLAQKQMIAKCN-KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDG-ADCVMLS 220 (398)
Q Consensus 145 sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~-~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG-~D~vmLS 220 (398)
.|.|=|..|...-.. ...+....+..+ ..+.||++.-.+ .|.. ...++.+| +|.|+++
T Consensus 255 ~d~i~vs~g~~~~~~-----~~~~~~~~~~ik~~~~ipvi~~G~i--------~~~~-----a~~~l~~g~~D~V~~g 314 (338)
T cd02933 255 LAYLHLVEPRVAGNP-----EDQPPDFLDFLRKAFKGPLIAAGGY--------DAES-----AEAALADGKADLVAFG 314 (338)
T ss_pred CcEEEEecCCCCCcc-----cccchHHHHHHHHHcCCCEEEECCC--------CHHH-----HHHHHHcCCCCEEEeC
Confidence 588888777543222 122223333333 358999975331 1333 35777766 9999995
No 479
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.47 E-value=5.8e+02 Score=26.00 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=28.6
Q ss_pred HhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEEee
Q psy259 143 AEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186 (398)
Q Consensus 143 ~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~AT 186 (398)
+..|.+.++ |-|---+|. .+-.++++.|++.|+.|++.|
T Consensus 128 ~~~d~Vvls-GSlP~g~~~----d~y~~li~~~~~~g~~vilD~ 166 (310)
T COG1105 128 ESDDIVVLS-GSLPPGVPP----DAYAELIRILRQQGAKVILDT 166 (310)
T ss_pred ccCCEEEEe-CCCCCCCCH----HHHHHHHHHHHhcCCeEEEEC
Confidence 335665555 866555554 456789999999999999987
No 480
>PRK04311 selenocysteine synthase; Provisional
Probab=20.44 E-value=1.4e+02 Score=31.91 Aligned_cols=52 Identities=25% Similarity=0.328 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCEEEee--hhhHHhhcCCCCCc---hhhhhHHHHHHhCCcEEEecCccCCC
Q psy259 169 KQMIAKCNKVGKPVICAT--QMLESMIKKPRATR---AEISDVANAVLDGADCVMLSGETAKG 226 (398)
Q Consensus 169 k~ii~~c~~~gkpvi~AT--QmLeSMi~~~~Ptr---aEvsDVanav~dG~D~vmLS~ETA~G 226 (398)
+.|.+.|+++|.|+++=- ..| .+.+|. .| -++.+.+..|+|.++.|+-=..|
T Consensus 240 ~eI~~lak~~gi~vivD~gsG~l-----~~~~~~gl~~~-p~~~~~l~~GaDiv~fSg~K~Lg 296 (464)
T PRK04311 240 AELAALGKEHGLPVVYDLGSGSL-----VDLSQYGLPDE-PTVQELLAAGVDLVTFSGDKLLG 296 (464)
T ss_pred HHHHHHHHHcCCeEEEECCCccc-----ccchhccCCCC-CchhhHHhcCCcEEEecCccccc
Confidence 457899999999999821 111 011122 23 26778888999999999765443
No 481
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=20.40 E-value=1.6e+02 Score=28.46 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEECCCchHHHHHHhhCCCC-CEEEEeCChhhhhhccc
Q psy259 267 AHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRC-PIISVTRFPQVARQLHL 323 (398)
Q Consensus 267 ~~~ia~aav~~A~~~~A~aIIv~T~SG~tA~~iSkyRP~~-PIIAVT~n~~taRqL~L 323 (398)
.+.||..|+++-. +-+. | |=.+|.|...+++|=|.. ++-.+|++..++..|.=
T Consensus 78 K~~IA~~Aa~~I~--~g~t-I-fld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~ 131 (256)
T PRK10434 78 KELIAEAAVSLIH--DGDS-I-ILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSE 131 (256)
T ss_pred HHHHHHHHHhhCC--CCCE-E-EEcCcHHHHHHHHHhccCCCeEEEECCHHHHHHHhh
Confidence 4567777776543 2333 3 337899999999988864 69999999988887753
No 482
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=20.37 E-value=1.1e+02 Score=29.76 Aligned_cols=42 Identities=21% Similarity=0.444 Sum_probs=30.7
Q ss_pred HHHhcHHHHH-HhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 133 QGVKNLDEII-AEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 133 ~~v~n~deIl-~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
.-+..+++.+ .-.|||+|.+.|-. .-...+++++++|.||+.
T Consensus 79 ~Q~~~i~~~ia~~~daIiv~~~d~~----------~~~~~v~~a~~aGIpVv~ 121 (322)
T COG1879 79 KQIAQIEDLIAQGVDAIIINPVDPD----------ALTPAVKKAKAAGIPVVT 121 (322)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCChh----------hhHHHHHHHHHCCCcEEE
Confidence 3455555554 44999999988752 334578889999999998
No 483
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=20.33 E-value=7.7e+02 Score=23.68 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECC-CchHHHHHHhhCCCCCEEEEe
Q psy259 266 SAHSVAIAAVEAASKVFAGAIVVLTT-TGTSARLISKYRPRCPIISVT 312 (398)
Q Consensus 266 ~~~~ia~aav~~A~~~~A~aIIv~T~-SG~tA~~iSkyRP~~PIIAVT 312 (398)
..+++.+ .+++.+.+|+++++.+. +....+.+++- +..|++..-
T Consensus 159 ~~eai~R--a~ay~~AGAD~v~v~~~~~~~~~~~~~~~-~~~Pl~~~~ 203 (243)
T cd00377 159 LDEAIER--AKAYAEAGADGIFVEGLKDPEEIRAFAEA-PDVPLNVNM 203 (243)
T ss_pred HHHHHHH--HHHHHHcCCCEEEeCCCCCHHHHHHHHhc-CCCCEEEEe
Confidence 4444443 45666789999999876 55666777776 668988763
No 484
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=20.32 E-value=1.5e+02 Score=29.81 Aligned_cols=13 Identities=8% Similarity=0.429 Sum_probs=6.4
Q ss_pred EEEEECCCchHHH
Q psy259 285 AIVVLTTTGTSAR 297 (398)
Q Consensus 285 aIIv~T~SG~tA~ 297 (398)
.+|++|.||.|..
T Consensus 69 lvI~iS~SG~t~e 81 (308)
T TIGR02128 69 LLIAVSYSGNTEE 81 (308)
T ss_pred EEEEEcCCCCCHH
Confidence 4455555555443
No 485
>PRK08246 threonine dehydratase; Provisional
Probab=20.22 E-value=8.5e+02 Score=24.10 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhh
Q psy259 169 KQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIW 248 (398)
Q Consensus 169 k~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 248 (398)
.-+...|+..|.|+.+- .|....-.-+...-..|++.+...+ .| .++++...++.++- ..++
T Consensus 81 ~a~A~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~~-g~~~ 142 (310)
T PRK08246 81 LAVAYAAAALGVPATVF-----------VPETAPPAKVARLRALGAEVVVVGA-----EY-ADALEAAQAFAAET-GALL 142 (310)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHCCCEEEEeCC-----CH-HHHHHHHHHHHHhc-CCEe
Confidence 34566899999999884 2332222234566778999777643 22 35555555443321 1111
Q ss_pred hhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCchHHHHHHh-hCCCCCEEEEeCCh
Q psy259 249 HTKLLTELKSMLPLPIDSAHSVAIAAVEAASKV-FAGAIVVLTTTGTSARLISK-YRPRCPIISVTRFP 315 (398)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~-~A~aIIv~T~SG~tA~~iSk-yRP~~PIIAVT~n~ 315 (398)
..+ |++. ...+.-...+.++.+++ ..+.||+.+=+|.|+.-+++ +++...|++|-+..
T Consensus 143 ~~~-~~n~--------~~i~g~~t~~~Ei~eq~~~~D~iv~~vG~GG~~~Gi~~~~~~~~~vi~ve~~~ 202 (310)
T PRK08246 143 CHA-YDQP--------EVLAGAGTLGLEIEEQAPGVDTVLVAVGGGGLIAGIAAWFEGRARVVAVEPEG 202 (310)
T ss_pred CCC-CCCh--------hhhcchHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHhcCCCEEEEEeeCC
Confidence 111 1110 01111122345555554 58999999999998876665 45677899998744
No 486
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=20.16 E-value=1e+02 Score=32.10 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=47.8
Q ss_pred ccEEEeecChHHHhcHHHHHHhcCeeEEcCCCCCCCCChhhHHHHHHHHHHHHHHcCCCEEE
Q psy259 123 IKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184 (398)
Q Consensus 123 ~~iiaKIE~~~~v~n~deIl~~sDgimvaRgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~ 184 (398)
..+.+-||-..-.-||++.++-+|-|+.+-|=+=-.....|+|.- +.+.|++++||||.
T Consensus 263 a~l~~Gi~iV~~~~~le~~v~daDLVITGEGr~D~Qs~~GK~pig---VA~~Akk~~vPvIa 321 (378)
T COG1929 263 AELKSGIEIVLEATNLEDAVKDADLVITGEGRIDSQSLHGKTPIG---VAKLAKKYGVPVIA 321 (378)
T ss_pred CcccccHHHHHHHhCHHHhhccCCEEEeCCCcccccccCCccchH---HHHhhhhhCCCEEE
Confidence 456677777777779999999999999999977666667777764 66778999999996
No 487
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=20.15 E-value=6.6e+02 Score=25.86 Aligned_cols=76 Identities=16% Similarity=0.085 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHHH-hCCcEEEecCccCCCCChHHHHHHHHHH
Q psy259 161 PWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVL-DGADCVMLSGETAKGDYPVECVRAMHNT 239 (398)
Q Consensus 161 ~~~v~~~qk~ii~~c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav~-dG~D~vmLS~ETA~G~yP~eaV~~m~~I 239 (398)
.+++....+..++.+++.|..|.+. .....+-+...+-+++.++. -|+|.|.|. +|.=...|.+.-+....+
T Consensus 111 ~~~~l~~~~~~v~~a~~~G~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 111 REEVLERMVEAVEYAKDHGLYVSFS------AEDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGILDPFTMYELVKEL 183 (378)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEE------eccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCCCHHHHHHHHHHH
Confidence 4666677788999999999988774 22444555666666666644 599999997 788888999988888877
Q ss_pred HHHH
Q psy259 240 CKEA 243 (398)
Q Consensus 240 ~~~a 243 (398)
.+..
T Consensus 184 ~~~~ 187 (378)
T PRK11858 184 VEAV 187 (378)
T ss_pred HHhc
Confidence 6544
No 488
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=20.11 E-value=2e+02 Score=22.65 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCcEEEEECC---------CchHHHHHHhhCCCCCEEEE
Q psy259 271 AIAAVEAASKVFAGAIVVLTT---------TGTSARLISKYRPRCPIISV 311 (398)
Q Consensus 271 a~aav~~A~~~~A~aIIv~T~---------SG~tA~~iSkyRP~~PIIAV 311 (398)
+.+..+.+.+.+++.+|+-+. .|.++..+.+. .+||++.+
T Consensus 82 ~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~-~~~pvliv 130 (130)
T cd00293 82 AEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRH-APCPVLVV 130 (130)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhC-CCCCEEeC
Confidence 566677888889998887653 56667777766 77998854
No 489
>PLN02417 dihydrodipicolinate synthase
Probab=20.08 E-value=3.2e+02 Score=26.75 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=47.2
Q ss_pred HHHhCCcEEEecCccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCChHHHHHHHHHHHHHhcCCcEEEE
Q psy259 209 AVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVV 288 (398)
Q Consensus 209 av~dG~D~vmLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aav~~A~~~~A~aIIv 288 (398)
.+..|+|++++.| ..|.|+.-+.+.-.++++.+-+....+ .. +.. .-...++.++ ..-.+.|.+.+|+++++
T Consensus 31 l~~~Gv~Gi~~~G--stGE~~~ls~~Er~~~~~~~~~~~~~~--~p-vi~-gv~~~~t~~~--i~~a~~a~~~Gadav~~ 102 (280)
T PLN02417 31 QIENGAEGLIVGG--TTGEGQLMSWDEHIMLIGHTVNCFGGK--IK-VIG-NTGSNSTREA--IHATEQGFAVGMHAALH 102 (280)
T ss_pred HHHcCCCEEEECc--cCcchhhCCHHHHHHHHHHHHHHhCCC--Cc-EEE-ECCCccHHHH--HHHHHHHHHcCCCEEEE
Confidence 4557999999988 567889888888888877654432110 00 000 0112233344 34456778899999999
Q ss_pred ECCC
Q psy259 289 LTTT 292 (398)
Q Consensus 289 ~T~S 292 (398)
.+..
T Consensus 103 ~~P~ 106 (280)
T PLN02417 103 INPY 106 (280)
T ss_pred cCCc
Confidence 8763
No 490
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=20.03 E-value=7.7e+02 Score=23.50 Aligned_cols=47 Identities=13% Similarity=0.291 Sum_probs=31.8
Q ss_pred HHHcCCCEEEeehhhHHhhcCCCCCchhhhhHHHHH---HhCCcEEEecCccCCCCChHHHH
Q psy259 175 CNKVGKPVICATQMLESMIKKPRATRAEISDVANAV---LDGADCVMLSGETAKGDYPVECV 233 (398)
Q Consensus 175 c~~~gkpvi~ATQmLeSMi~~~~PtraEvsDVanav---~dG~D~vmLS~ETA~G~yP~eaV 233 (398)
++..+.|||.+. ..-+. .|+..+. ..|+|+||+..---.|.++++-.
T Consensus 186 ~~~~~ipviasG---------Gi~s~---~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~ 235 (241)
T PRK14024 186 CARTDAPVVASG---------GVSSL---DDLRALAELVPLGVEGAIVGKALYAGAFTLPEA 235 (241)
T ss_pred HhhCCCCEEEeC---------CCCCH---HHHHHHhhhccCCccEEEEeHHHHcCCCCHHHH
Confidence 345689999743 33343 3555443 35999999987777888887754
Done!