RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy259
(398 letters)
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric
enzyme that regulates glycolysis through binding of the
substrate, phosphoenolpyruvate, and one or more
allosteric effectors. Like other allosteric enzymes, PK
has a high substrate affinity R state and a low affinity
T state. PK exists as several different isozymes,
depending on organism and tissue type. In mammals,
there are four PK isozymes: R, found in red blood cells,
L, found in liver, M1, found in skeletal muscle, and M2,
found in kidney, adipose tissue, and lung. PK forms a
homotetramer, with each subunit containing three
domains. The T state to R state transition of PK is
more complex than in most allosteric enzymes, involving
a concerted rotation of all 3 domains of each monomer in
the homotetramer.
Length = 480
Score = 430 bits (1107), Expect = e-149
Identities = 167/284 (58%), Positives = 209/284 (73%), Gaps = 3/284 (1%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
S+V I +++ GE+GK IKIIAKIEN +GV N DEI+ +DGIMVARGDLG+EIP +V
Sbjct: 200 SDVLEIREVL--GEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEIPAEEV 257
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
FLAQK +IAKCN GKPVI ATQMLESMI PR TRAE+SDVANAVLDG DCVMLSGETA
Sbjct: 258 FLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETA 317
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
KG YPVE V+AM C EAE A+ H L E++ + P P + +VA++AV AA ++ A
Sbjct: 318 KGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAK 377
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
AIVVLTT+G +ARL+SKYRP PII+VTR Q ARQLHL+R + P+++EEP W D
Sbjct: 378 AIVVLTTSGRTARLVSKYRPNAPIIAVTRNEQTARQLHLYRGVYPVLFEEP-KPGWQEDT 436
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYV 388
D R+ + +++ L +GD V+VV GW G+G TNT+RI+ V
Sbjct: 437 DARLKAAVNVAKEKGLLKKGDLVVVVQGWPVGSGSTNTMRILTV 480
Score = 40.0 bits (94), Expect = 0.002
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 50 RLTGIICTIGPASVAVDMLEKIIETESN 77
R T I+CTIGPA+ +V+ L+K+I+ N
Sbjct: 2 RRTKIVCTIGPATDSVENLKKLIKAGMN 29
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase. This enzyme is a
homotetramer. Some forms are active only in the presence
of fructose-1,6-bisphosphate or similar phosphorylated
sugars [Energy metabolism, Glycolysis/gluconeogenesis].
Length = 473
Score = 360 bits (926), Expect = e-121
Identities = 146/284 (51%), Positives = 195/284 (68%), Gaps = 10/284 (3%)
Query: 105 SNVRLIEKLMATGEQG-KHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWK 163
+V + +++ GE+G K +KIIAKIEN +GV N+DEI +DGIMVARGDLG+EIP +
Sbjct: 197 EDVLEVREVL--GEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEIPAEE 254
Query: 164 VFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGET 223
V +AQK+MI KCN+ GKPVI ATQML+SMIK PR TRAE+SDVANA+LDG D VMLSGET
Sbjct: 255 VPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGET 314
Query: 224 AKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFA 283
AKG YPVE V+ M KEAE A+ + + K+ P P ++A++AVEAA K+ A
Sbjct: 315 AKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDA 374
Query: 284 GAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRD 343
AIVVLT +G +ARL+SKYRP PII+VT +VARQL L+ + P + + + D
Sbjct: 375 KAIVVLTESGRTARLLSKYRPNAPIIAVTPNERVARQLALYWGVFPFLVD-----EEPSD 429
Query: 344 VDTRVAHGIKYGRDRKFLNQGDPVIVVTGW--KKGAGFTNTVRI 385
+ RV ++ +++ L +GD V+V+ G G G TNT+R+
Sbjct: 430 TEARVNKALELLKEKGILKKGDLVVVIQGGAPIGGVGGTNTIRV 473
Score = 38.8 bits (91), Expect = 0.005
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 50 RLTGIICTIGPASVAVDMLEKIIE 73
R T I+CTIGPA+ + +ML+K+++
Sbjct: 1 RRTKIVCTIGPATNSPEMLKKLLD 24
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 344 bits (884), Expect = e-115
Identities = 135/285 (47%), Positives = 180/285 (63%), Gaps = 11/285 (3%)
Query: 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVF 165
+V + +++A G+ +KIIAKIEN + V NLDEII +DGIMVARGDLG+EIP +V
Sbjct: 202 DVEEVREILAE-TGGRDVKIIAKIENQEAVDNLDEIIEASDGIMVARGDLGVEIPLEEVP 260
Query: 166 LAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAK 225
+ QK++I K + GKPVI ATQMLESMI+ PR TRAE+SDVANAVLDG D VMLSGETA
Sbjct: 261 IIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAA 320
Query: 226 GDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSA-HSVAIAAVEAASKVFAG 284
G YPVE V M KEAE + L+ + P S ++A+AAV+ A K+ A
Sbjct: 321 GKYPVEAVATMARIAKEAEKEL---PDNQLLRFRVDPPDSSITEAIALAAVDIAEKLDAK 377
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
AIV LT +G +ARL+SKYRP PII++T +VAR+L L + PL+ EE
Sbjct: 378 AIVTLTESGRTARLLSKYRPEAPIIALTPNERVARRLALVWGVYPLLVEE-----KPTST 432
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTG-WKKGAGFTNTVRIVYV 388
D V ++ + + +GD V++ G G TNT++++ V
Sbjct: 433 DEMVEEAVEKLLESGLVKKGDLVVITAGVPMGTVGTTNTIKVLTV 477
Score = 37.9 bits (89), Expect = 0.009
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 50 RLTGIICTIGPASVAVDMLEKIIE 73
R T I+ T+GPA+ + +MLEK+IE
Sbjct: 5 RKTKIVATLGPATESEEMLEKLIE 28
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 321 bits (824), Expect = e-106
Identities = 145/284 (51%), Positives = 187/284 (65%), Gaps = 9/284 (3%)
Query: 106 NVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVF 165
+VRL +L+ GE+G+HIKII KIEN +G+ N DEI+AE+DGIMVARGDLG+EIPP KVF
Sbjct: 237 DVRLCRQLL--GERGRHIKIIPKIENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVF 294
Query: 166 LAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAK 225
LAQK MI+KCN GKPVI ATQMLESMIK PR TRAE +DVANAVLDG DCVMLSGETA
Sbjct: 295 LAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETAN 354
Query: 226 GDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGA 285
G +PVE V M C EAE I + L + +P P+ +VA +AVE A + A
Sbjct: 355 GKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKL 414
Query: 286 IVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVD 345
I+ LT TG +ARLISKYRP C I++++ P V + L + R + V + + D
Sbjct: 415 IIALTETGNTARLISKYRPSCTILALSASPSVVKSLSVARGVTTYV------VNSFQGTD 468
Query: 346 TRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVYV 388
+ + I ++R + GD I V G K+ AG +N +++V +
Sbjct: 469 VVIRNAIALAKERGLVESGDSAIAVHGVKEEVAGSSNLMKVVKI 512
Score = 31.7 bits (72), Expect = 0.86
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 50 RLTGIICTIGPASVAVDMLEKIIE 73
+ T I+CT+GPA V+ L K+I+
Sbjct: 38 KKTHIVCTMGPACKNVETLVKLID 61
>gnl|CDD|215255 PLN02461, PLN02461, Probable pyruvate kinase.
Length = 511
Score = 320 bits (821), Expect = e-105
Identities = 130/279 (46%), Positives = 175/279 (62%), Gaps = 15/279 (5%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
S++ + K++ GE K I +I+K+EN +G+ N D+I+AE+D MVARGDLG+EIP K+
Sbjct: 220 SDLVEVRKVL--GEHAKSILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKI 277
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
FLAQK MI KCN GKPV+ ATQMLESMIK PR TRAE +DVANAVLDG DCVMLSGETA
Sbjct: 278 FLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETA 337
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
G YP V+ M C+EAEA++ + L E+ PLP+ S+A +AV A+KV A
Sbjct: 338 AGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKAS 397
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISV-------------TRFPQVARQLHLHRSIIPLV 331
IVVLT GT+ARL++KYRP PI+SV AR ++R +IP++
Sbjct: 398 LIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVL 457
Query: 332 YEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVV 370
E + A + + I++ + + GD V+ +
Sbjct: 458 AEGSAKATDSESTEEILEAAIEHAKKKGLCKPGDSVVAL 496
Score = 36.9 bits (86), Expect = 0.016
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 28 LAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKII 72
+A L GL T I+CT+GPAS +V MLEK++
Sbjct: 1 MANIDIEGILKGLP--ADGLRRPKTKIVCTLGPASRSVPMLEKLL 43
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 306 bits (786), Expect = e-100
Identities = 120/258 (46%), Positives = 159/258 (61%), Gaps = 18/258 (6%)
Query: 120 GKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVG 179
H KIIAKIE + V N+DEII +DGIMVARGDLG+EIP +V QK++I K + G
Sbjct: 213 CPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAG 272
Query: 180 KPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNT 239
KPVI ATQMLESMI+ PR TRAE+SDVANAVLDG D VMLSGETA G YPVE V AM
Sbjct: 273 KPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARI 332
Query: 240 CKEAEAAIWHTKLLTELKSMLPLPI---DSAHSVAIAAVEAASKV-FAGAIVVLTTTGTS 295
CK AE K + S L ++A++A+ AA+ + AIV LT +G +
Sbjct: 333 CKGAE------KEFSINLSKHRLDRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRT 386
Query: 296 ARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEP-SPADWLRDVDTRVAHGIKY 354
ARLIS++RP PI +VTR + R+L L+R + P++++ D + ++
Sbjct: 387 ARLISRFRPGAPIFAVTRDEKTQRRLALYRGVYPVLFDSAADTDDAAEEA-------LRL 439
Query: 355 GRDRKFLNQGDPVIVVTG 372
++ + GD V+V +G
Sbjct: 440 LLEKGLVESGDLVVVTSG 457
Score = 37.8 bits (89), Expect = 0.008
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 50 RLTGIICTIGPASVAVDMLEKIIE 73
R T I+ T+GPAS + + LEK+IE
Sbjct: 4 RRTKIVATLGPASDSPENLEKLIE 27
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional.
Length = 454
Score = 285 bits (731), Expect = 9e-93
Identities = 142/295 (48%), Positives = 194/295 (65%), Gaps = 11/295 (3%)
Query: 102 LYESNVRLIEKLM----ATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGI 157
++ S +R E++ A G +G I II KIENHQGV+N+D II E+DGIMVARGDLG+
Sbjct: 164 IFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGV 223
Query: 158 EIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCV 217
EIP KV +AQK +I+KCN GKPVICATQMLESM PR TRAE+SDVANAV +GADCV
Sbjct: 224 EIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCV 283
Query: 218 MLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEA 277
MLSGETAKG YP E V+ M C EA++A+ +K + P+P+ + +V +AV +
Sbjct: 284 MLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNS 343
Query: 278 ASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSP 337
+ A A+VVL+ TG SARL++KYRP CPI+ VT Q RQL++ + + + ++
Sbjct: 344 VYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFD---- 399
Query: 338 ADWL---RDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYVS 389
A+ L + RVA G+ + + + ++ GD ++VV K G+ N RI+ VS
Sbjct: 400 AERLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIILVS 454
>gnl|CDD|215802 pfam00224, PK, Pyruvate kinase, barrel domain. This domain of the
is actually a small beta-barrel domain nested within a
larger TIM barrel. The active site is found in a cleft
between the two domains.
Length = 348
Score = 269 bits (691), Expect = 6e-88
Identities = 101/149 (67%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
S+V + +++ GE GK I+IIAKIEN +GV N DEI+ +DGIMVARGDLGIEIP +V
Sbjct: 202 SDVLEVREVL--GEAGKDIQIIAKIENQEGVNNFDEILEASDGIMVARGDLGIEIPAEEV 259
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
FLAQK +IAKCN GKPVI ATQMLESMI PR TRAE+SDVANAVLDG DCVMLSGETA
Sbjct: 260 FLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETA 319
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLL 253
KG+YPVE V+AM C EAE A+ H +
Sbjct: 320 KGNYPVEAVKAMARICLEAEKALPHRNVF 348
Score = 39.6 bits (93), Expect = 0.002
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 50 RLTGIICTIGPASVAVDMLEKIIETESN 77
R T I+CTIGPA+ +V+ LEK+I+ N
Sbjct: 2 RRTKIVCTIGPATDSVENLEKLIKAGMN 29
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional.
Length = 590
Score = 276 bits (707), Expect = 2e-87
Identities = 125/287 (43%), Positives = 172/287 (59%), Gaps = 11/287 (3%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
S+V I +L+ GKHI IIAKIE + + N+D I+ DG+MVARGDLG+EIP +V
Sbjct: 204 SDVLEIRELIEE-HNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARGDLGVEIPAEEV 262
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
L QK++I K N++GKPVI ATQML+SM + PR TRAE SDVANA+LDG D VMLS ETA
Sbjct: 263 PLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETA 322
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
GDYPVE V+ M E + + +L++ I +A S A++ A ++ A
Sbjct: 323 AGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPEFTTT-ITNAISQAVS--HIALQLDAA 379
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
AIV LT +G +AR +SKYRP+ PI++VT VAR+L L + PL+ + D D
Sbjct: 380 AIVTLTKSGATARNVSKYRPKTPILAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDA 439
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVYVSD 390
I ++ L QGD V++ G G +G T+ +++ V
Sbjct: 440 ------AINVAQESGLLKQGDLVVITAGTLVGESGSTDLMKVHVVGA 480
Score = 38.4 bits (90), Expect = 0.006
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 50 RLTGIICTIGPASVAVDMLEKIIE 73
R T I+ TIGPAS + + L ++IE
Sbjct: 8 RRTKIVATIGPASESPEKLRQLIE 31
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional.
Length = 470
Score = 270 bits (692), Expect = 1e-86
Identities = 127/285 (44%), Positives = 173/285 (60%), Gaps = 17/285 (5%)
Query: 104 ESNVRLI-EKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPW 162
S+V I E L A G G++I+II+KIEN +G+ N DEI+ +DGIMVARGDLG+EIP
Sbjct: 197 RSDVLEIREHLKAHG--GENIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVE 254
Query: 163 KVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGE 222
+V AQK MI KCN+ K VI ATQML+SMIK PR TRAE DVANA+LDG D VMLSGE
Sbjct: 255 EVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGE 314
Query: 223 TAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVF 282
+AKG YP+E V M C+ + + +++L + + L I A V AVE A K+
Sbjct: 315 SAKGKYPLEAVSIMATICERTDRVM-NSRLESNNDNR-KLRITEA--VCRGAVETAEKLD 370
Query: 283 AGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPAD--W 340
A IVV T G SAR + KY P I+++T + ARQL L + ++P + +E + D +
Sbjct: 371 APLIVVATQGGKSARSVRKYFPDATILALTTNEKTARQLVLSKGVVPQLVKEIASTDDFY 430
Query: 341 LRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRI 385
+ + G+ +GD V++V+G +G TNT +
Sbjct: 431 RLGKELALQSGL--------AQKGDVVVMVSGALVPSGTTNTASV 467
Score = 30.4 bits (69), Expect = 1.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 52 TGIICTIGPASVAVDMLEKIIETESN 77
T I+CTIGP + + +ML K+++ N
Sbjct: 4 TKIVCTIGPKTESEEMLTKLLDAGMN 29
>gnl|CDD|215409 PLN02765, PLN02765, pyruvate kinase.
Length = 526
Score = 229 bits (586), Expect = 3e-70
Identities = 108/287 (37%), Positives = 163/287 (56%), Gaps = 31/287 (10%)
Query: 124 KIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVI 183
+I AKIEN +G+ + DEI+ EADGI+++RG+LGI++PP KVFL QK + KCN GKP +
Sbjct: 251 QIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV 310
Query: 184 CATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 243
T++++SM R TRAE +DVANAVLDGAD ++L ET +G YPVE + + C EA
Sbjct: 311 -VTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEA 369
Query: 244 EAAIWHTKLLTELKSMLPL---PIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLIS 300
E K + P+ S+A +AV AA KV A I+V T++G +ARLI+
Sbjct: 370 EKVFNQ---DLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAARLIA 426
Query: 301 KYRPRCPIISVTRFPQV--------------ARQLHLHRSIIPLVYEEPSPADWLRDVDT 346
KYRP P++SV P++ ARQ + R + P++ + A+ +
Sbjct: 427 KYRPTMPVLSVV-IPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNE 485
Query: 347 ---RVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYVSD 390
+VA + +G+ + D V+V + G ++ V+I+ + D
Sbjct: 486 SVLKVA--LDHGKAAGVIKSHDRVVVC----QKVGDSSVVKIIELDD 526
Score = 29.6 bits (67), Expect = 3.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 40 LDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIE 73
L+ S + LT I+ T+GP S +V+++E ++
Sbjct: 18 LEPSKPSFFPALTKIVGTLGPKSRSVEVIEACLK 51
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional.
Length = 476
Score = 227 bits (581), Expect = 6e-70
Identities = 107/269 (39%), Positives = 154/269 (57%), Gaps = 9/269 (3%)
Query: 125 IIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVIC 184
++AKIE Q + L+ I+ +D IMVARGDLG+E+P +V L QK++I + GKPV+
Sbjct: 214 VMAKIEKPQAIDRLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVV 273
Query: 185 ATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAE 244
ATQMLESMI+ P TRAE+SDVA AVLDGAD VMLS ETA G YPVE VR M ++ E
Sbjct: 274 ATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYPVEAVRTMARIIRQVE 333
Query: 245 AAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRP 304
L + P +++ AA + A ++ A+V T++G +A ++ RP
Sbjct: 334 RDP-TYPPLIHAQRPQPEA-TKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARERP 391
Query: 305 RCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQG 364
PI+++T P+ AR+L L + +V ++ RD D V + F +G
Sbjct: 392 PLPILALTPNPETARRLALTWGVHCVVVDD------ARDTDDMVRRADRIALAEGFYKRG 445
Query: 365 DPVIVVTGWKKG-AGFTNTVRIVYVSDNL 392
D V++V G G G TN +RI Y+ ++
Sbjct: 446 DRVVIVAGVPPGTPGSTNMLRIAYIGEDD 474
Score = 30.3 bits (69), Expect = 2.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 50 RLTGIICTIGPASVAVDMLEKIIE 73
R I+ T+GPAS + DM+ K++E
Sbjct: 5 RRVKILATLGPASSSEDMIRKLVE 28
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit.
Length = 509
Score = 177 bits (450), Expect = 1e-50
Identities = 98/260 (37%), Positives = 145/260 (55%), Gaps = 19/260 (7%)
Query: 120 GKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVG 179
I +IAKIE+ +KNL+EII +DG MVARGDLG +IP +V Q++++ C ++
Sbjct: 244 DSDIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLN 303
Query: 180 KPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYP---VECVRA- 235
KPVI A+Q+LESMI+ P TRAE++DV+ AV AD +MLSGE+A G YP + +R+
Sbjct: 304 KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSV 363
Query: 236 ---MHNTCKEAEAAIWHTKL-LTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTT 291
M +E + H L L +L S L I + + +A + A+ + AI V T
Sbjct: 364 SLRMELWSREEKR---HEALELPQLSSSLSDRI--SEEICNSAAKMANNLGVDAIFVYTK 418
Query: 292 TGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHG 351
G A L+S+ RP CPI + T V R+L+L +IP D+ D+++ +
Sbjct: 419 HGHMASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRL------DFSDDMESNLNKT 472
Query: 352 IKYGRDRKFLNQGDPVIVVT 371
+ R + GD VI V+
Sbjct: 473 FSLLKARGMIKSGDLVIAVS 492
Score = 30.1 bits (68), Expect = 2.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 49 VRLTGIICTIGPASVAVDMLEKI 71
R T ++CTIGPA + LE +
Sbjct: 24 TRRTKLVCTIGPACCGFEQLEAL 46
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase.
Length = 581
Score = 174 bits (442), Expect = 5e-49
Identities = 94/250 (37%), Positives = 136/250 (54%), Gaps = 13/250 (5%)
Query: 123 IKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPV 182
I +I KIE+ + NL II +DG MVARGDLG E+P +V L Q+++I +C +GKPV
Sbjct: 320 IHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPV 379
Query: 183 ICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKE 242
I AT MLESMI P TRAE+SD+A AV +GAD VMLSGETA G +P++ V+ MH
Sbjct: 380 IVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 439
Query: 243 AEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAA--SKVFAGAIVVLTTTGTSARLIS 300
EA + L H + A A + +I+V T TG A L+S
Sbjct: 440 TEATLPEGTTPPNLGQAFK-----NHMSEMFAFHATMMANTLGTSIIVFTRTGFMAILLS 494
Query: 301 KYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKF 360
YRP I + T ++ ++L L++ + P +Y + S D + A + ++
Sbjct: 495 HYRPSGTIFAFTNEKRIQQRLALYQGVCP-IYMQFS-----DDAEETFARALSLLLNKGM 548
Query: 361 LNQGDPVIVV 370
+ +G+ V +V
Sbjct: 549 VKEGEEVALV 558
Score = 32.6 bits (74), Expect = 0.41
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 45 KSSYVRLTGIICTIGPASVAVDMLEKIIETESN 77
K S R T I+CTIGP++ +M+ K+ E N
Sbjct: 105 KPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMN 137
>gnl|CDD|217269 pfam02887, PK_C, Pyruvate kinase, alpha/beta domain. As well as
being found in pyruvate kinase this family is found as
an isolated domain in some bacterial proteins.
Length = 117
Score = 133 bits (336), Expect = 4e-38
Identities = 47/122 (38%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Query: 267 AHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRS 326
++A +AVEAA ++ A AIVVLT +G++ARL+SKYRP PII+VT + AR+L L+
Sbjct: 1 TEAIARSAVEAAKELGAKAIVVLTESGSTARLVSKYRPGAPIIAVTPNERTARRLALYWG 60
Query: 327 IIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRI 385
+ P++ +E S D +A ++ +D + +GD V+V G G +G TNT+++
Sbjct: 61 VHPVLGDERS-----ISTDEIIAEALRMAKDAGLVKKGDLVVVTAGVPVGTSGGTNTLKV 115
Query: 386 VY 387
+
Sbjct: 116 IT 117
>gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated.
Length = 352
Score = 134 bits (339), Expect = 4e-36
Identities = 60/121 (49%), Positives = 82/121 (67%)
Query: 124 KIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVI 183
+IAKIE + ++N +I EADGIM+ARGDLG+E+P + L QK MI +CN+ VI
Sbjct: 209 NLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVI 268
Query: 184 CATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEA 243
ATQML+SM+ TRAE++DV AVLDG + VMLS E+A G++P+E V + + A
Sbjct: 269 TATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIESVSTLRLVSEFA 328
Query: 244 E 244
E
Sbjct: 329 E 329
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 94.6 bits (236), Expect = 5e-21
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 13/131 (9%)
Query: 109 LIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEA-----DGIMVARGDLGIEIPPWK 163
L++ L G + ++ KIE + +NL I+ EA G+M+ARGDL +E+ +
Sbjct: 462 LLDALEKLG--ADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFER 519
Query: 164 VFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGET 223
+ Q++++ C PVI ATQ+LES+ KK +RAEI+D A A+ A+CVML+
Sbjct: 520 LAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMALR--AECVMLN--- 574
Query: 224 AKGDYPVECVR 234
KG + VE VR
Sbjct: 575 -KGPHIVEAVR 584
>gnl|CDD|236178 PRK08187, PRK08187, pyruvate kinase; Validated.
Length = 493
Score = 92.0 bits (229), Expect = 3e-20
Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 11/117 (9%)
Query: 122 HIKIIAKIENHQGVKNLDEIIAEADG-----IMVARGDLGIEIPPWKVFLAQKQMIAKCN 176
+ ++ KIE + V NL E+I +A G +M+ARGDL +EI ++ Q++++ C
Sbjct: 356 KLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCE 415
Query: 177 KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECV 233
PVI ATQ+LE ++KK +RAE++D A A A+CVML+ KG Y VE V
Sbjct: 416 AAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAV 466
>gnl|CDD|202594 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase family.
This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic
acid aldolase and 4-hydroxy-2-oxovalerate aldolase.
Length = 221
Score = 40.8 bits (96), Expect = 5e-04
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 107 VRLIEKLMATGEQG-----KHIKIIAKIENHQGVKNLDEIIA--EADGIMVARGDLGIEI 159
R +G + ++A+IE+ GV N DEI A DG+ + DL ++
Sbjct: 99 AREAVSACRYPPKGIRRANGNTCLLAQIESALGVLNADEIAAVEGLDGVFLGPEDLSADL 158
Query: 160 ------PPWKVFLAQKQMIAKC 175
+V A+ +++A
Sbjct: 159 GTLRSPGGPEVLFARTRILAAA 180
>gnl|CDD|182547 PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase;
Provisional.
Length = 256
Score = 38.6 bits (90), Expect = 0.003
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 121 KHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDL 155
K+I ++ +IE+ QGV N+D I A DGI V DL
Sbjct: 144 KNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDL 180
>gnl|CDD|132283 TIGR03239, GarL, 2-dehydro-3-deoxyglucarate aldolase. In E. coli
this enzyme (GarL) 2-dehydro-3-deoxyglucarate aldolase
acts in the catabolism of several sugars including
D-galactarate, D-glucarate and L-idarate. In fact,
5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for
this enzyme as it is unclear in the literature whether
the enzyme acts on only one of these or, as seems
likely, has no preference. (Despite the apparent large
difference in substrate stucture indicated by their
names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by
the chirality of most central hydroxyl-bearing carbon
and is alternately named 2-DH-3DO-galactarate.) The
reported product of D-galactarate dehydratase (4.2.1.42)
is the 5DH-4DO-glucarate isomer and this enzyme is found
proximal to the aldolase in many genomes (GenProp0714)
where no epimerase is known. Similarly, the product of
D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO
isomer, so the provenance of the 2-DH-3DO-glucarate
isomer for which this enzyme is named is unclear.
Length = 249
Score = 37.1 bits (86), Expect = 0.010
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 121 KHIKIIAKIENHQGVKNLDEIIAE--ADGIMVARGDL 155
+I ++ +IE+ +GV N+DEI A DGI V DL
Sbjct: 137 DNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDL 173
>gnl|CDD|107321 cd06326, PBP1_STKc_like, Type I periplasmic binding domain of
uncharacterized extracellular ligand-binding proteins.
The type I periplasmic binding domain of uncharacterized
extracellular ligand-binding proteins, some of which
contain a conserved catalytic serine/threonine protein
kinase (STKc) domain in the N-terminal region. Members
of this group are sequence-similar to the branched-chain
amino acid ABC transporter
leucine-isoleucine-valine-binding protein (LIVBP); their
ligand specificity has not been determined
experimentally, however.
Length = 336
Score = 31.8 bits (73), Expect = 0.63
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 273 AAVEAASKVFAGAIVVLTTTGTSARLISKYR-----PRCPIISVTRFPQVARQL 321
AAV + A++++ +A I R + +S +AR L
Sbjct: 182 AAVAQLAAARPQAVIMVGAYKAAAAFIRALRKAGGGAQFYNLSFVGADALARLL 235
>gnl|CDD|218176 pfam04614, Pex19, Pex19 protein family.
Length = 244
Score = 31.2 bits (71), Expect = 0.70
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 58 IGPASVAVDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATG 117
EK+++ + + K E PS +P+ + +E+L +G
Sbjct: 25 GEEDPETKAQFEKLLKELGEEEAAASKEGEKPSAAAGESGTDPSFKDVISETLERLKESG 84
Query: 118 EQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLG 156
+ A + N D+++A+ + GD G
Sbjct: 85 D-----NADAAASEDKK--NSDDLLAQLLKQLGGNGDGG 116
>gnl|CDD|226356 COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
[Carbohydrate transport and metabolism].
Length = 255
Score = 31.1 bits (71), Expect = 0.79
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 121 KHIKIIAKIENHQGVKNLDEIIAEA--DGIMVARGDL 155
I ++ +IE G+ NLD I A DG+ + DL
Sbjct: 143 DEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPADL 179
>gnl|CDD|227500 COG5173, SEC6, Exocyst complex subunit SEC6 [Intracellular
trafficking and secretion].
Length = 742
Score = 31.1 bits (70), Expect = 1.4
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 64 AVDMLEKIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHI 123
A+D + KI+E E DE + K R+ ++ E P ++ + + + +
Sbjct: 198 AMDKIFKIVEKEEARDELTRKIRD--AKSELPKSQDNPVLKEFYGMYRMYATRKTRKLKD 255
Query: 124 KIIAKIEN 131
+I IE
Sbjct: 256 FVIKSIEV 263
>gnl|CDD|215461 PLN02856, PLN02856, fumarylacetoacetase.
Length = 424
Score = 30.4 bits (69), Expect = 1.5
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 355 GRDRKFLNQGDPVIVVTGWKKGAGF 379
G RKFL GD +V++GW KG G+
Sbjct: 385 GTRRKFLEDGD-EVVLSGWCKGDGY 408
>gnl|CDD|238850 cd01752, PLAT_polycystin, PLAT/LH2 domain of polycystin-1 like
proteins. Polycystins are a large family of membrane
proteins composed of multiple domains, present in fish,
invertebrates, mammals, and humans that are widely
expressed in various cell types and whose biological
functions remain poorly defined. In human, mutations in
polycystin-1 (PKD1) and polycystin-2 (PKD2) have been
shown to be the cause for autosomal dominant polycystic
kidney disease (ADPKD). The generally proposed function
of PLAT/LH2 domains is to mediate interaction with
lipids or membrane bound proteins.
Length = 120
Score = 28.8 bits (65), Expect = 1.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 367 VIVVTGWKKGAGFTNTVRIV 386
V V TGW++GAG T V I
Sbjct: 5 VTVFTGWRRGAGTTAKVTIT 24
>gnl|CDD|144634 pfam01115, F_actin_cap_B, F-actin capping protein, beta subunit.
Length = 240
Score = 29.9 bits (68), Expect = 2.2
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 8 NAYVDPLEVDGYVPPSQLRAL--AANTFVD 35
N Y PLE DG VP +LR L AN D
Sbjct: 73 NKYFPPLEADGPVPSERLRKLEIKANEAFD 102
>gnl|CDD|224074 COG1152, CdhA, CO dehydrogenase/acetyl-CoA synthase alpha subunit
[Energy production and conversion].
Length = 772
Score = 30.2 bits (68), Expect = 2.5
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 172 IAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGAD-CVMLSGETAKGDYPV 230
+ + +K+G PVI + M+ P T ++ ++ +++ G V+L A G+ V
Sbjct: 317 LEEASKLGIPVIATNEKG--MLGLPDVTDEDVDEIVESLVSGEPGVVLLDPLKA-GEVAV 373
Query: 231 ECVRAMH 237
E A+
Sbjct: 374 EVAEAVE 380
>gnl|CDD|223024 PHA03252, PHA03252, DNA packaging tegument protein UL25;
Provisional.
Length = 589
Score = 30.1 bits (68), Expect = 2.5
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 2 VWPSGDN----AYVDPLEVDGYVPPSQLRALAANTFVDH 36
P G AY DP + YVP S+ R A TF +H
Sbjct: 278 ASPGGGAANYFAYRDPPGMKYYVPLSKGRHYAPGTFDEH 316
>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate
dehydrogenase N-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
N-terminal NAD-binding domain.
Length = 157
Score = 28.7 bits (65), Expect = 2.9
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 20/136 (14%)
Query: 109 LIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQ 168
LIE++ T E K++ I +N + +L+E I AD I++A +P +
Sbjct: 34 LIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLA-------VPS-QALREV 85
Query: 169 KQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG-----ET 223
+ + G ++ T+ +E T +S++ L +LSG E
Sbjct: 86 LKQLKGLLSPGAILVSLTKGIE------PGTLKLLSEIIEEELPINPIAVLSGPSHAEEV 139
Query: 224 AKGDYPVECVRAMHNT 239
A G P V A +
Sbjct: 140 ALGL-PTATVVASEDQ 154
>gnl|CDD|107342 cd06347, PBP1_ABC_ligand_binding_like_12, Type I periplasmic
ligand-binding domain of uncharacterized ABC (Atpase
Binding Cassette)-type active transport systems that are
predicted to be involved in uptake of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (Atpase Binding Cassette)-type
active transport systems that are predicted to be
involved in uptake of amino acids, peptides, or
inorganic ions. This subgroup has high sequence
similarity to members of the family of hydrophobic amino
acid transporters (HAAT), such as
leucine/isoleucine/valine binding protein (LIVBP);
however its ligand specificity has not been determined
experimentally.
Length = 334
Score = 29.4 bits (67), Expect = 3.5
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 226 GDYPVECVRAMHNTCKEAEAAIWHTKLLTELK-SMLPLPIDSAHSVAIAAVEAASKVFAG 284
+E V N + EAA T+L+ + K + P+ S ++A + +KV
Sbjct: 37 LGKKIELV-VEDNKSDKEEAANAATRLIDQDKVVAIIGPVTSGATLAAGPIAEDAKVP-- 93
Query: 285 AIVVLTTTGTSARLI 299
++T + T+ ++
Sbjct: 94 ---MITPSATNPKVT 105
>gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40. This
family includes a range of zinc metallopeptidases
belonging to several families in the peptidase
classification. Family M20 are Glutamate
carboxypeptidases. Peptidase family M25 contains X-His
dipeptidases.
Length = 310
Score = 29.1 bits (65), Expect = 4.1
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 242 EAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAV-EAASKVFAGAIVVLTTTGTSARLIS 300
A A + E P P+ +AA+ EAA ++ G + G A +
Sbjct: 207 IAAGAAAAGVVEEEEDYRPPYPVTVNDPALVAALEEAAKELGLGPEPEPSGGGEDAAFFA 266
Query: 301 KYRPRCPII 309
+ P++
Sbjct: 267 EVGLGIPML 275
>gnl|CDD|216521 pfam01477, PLAT, PLAT/LH2 domain. This domain is found in a
variety of membrane or lipid associated proteins. It is
called the PLAT (Polycystin-1, Lipoxygenase,
Alpha-Toxin) domain or LH2 (Lipoxygenase homology)
domain. The known structure of pancreatic lipase shows
this domain binds to procolipase pfam01114, which
mediates membrane association. So it appears possible
that this domain mediates membrane attachment via other
protein binding partners. The structure of this domain
is known for many members of the family and is composed
of a beta sandwich.
Length = 115
Score = 27.7 bits (62), Expect = 4.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 367 VIVVTGWKKGAGFTNTVRIVYVSDN 391
V V TG + GAG V I +
Sbjct: 3 VKVKTGDELGAGTDANVYISLYGTH 27
>gnl|CDD|236809 PRK10964, PRK10964, ADP-heptose:LPS heptosyl transferase I;
Provisional.
Length = 322
Score = 28.8 bits (65), Expect = 5.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 346 TRVAHGIKYGRDRK 359
TR+AHG+K+G D +
Sbjct: 104 TRLAHGVKHGMDWQ 117
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed.
Length = 505
Score = 28.9 bits (64), Expect = 5.5
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 96 HCKEPNLYESNVR-LIEKLMATGEQ-----GKHIKIIAKIENHQGVKNLDEIIAEADGIM 149
HC E L +R L +K +Q +++ +IA ++ Q +I+A M
Sbjct: 139 HCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFM 198
Query: 150 VARGDLGIEIPPWKV 164
VARG + +E P +V
Sbjct: 199 VARGFMEVETPMMQV 213
>gnl|CDD|221962 pfam13182, DUF4007, Protein of unknown function (DUF4007). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 284 and
326 amino acids in length. This domain is found
associated with pfam01507 in some proteins, suggesting a
functional link.
Length = 285
Score = 28.4 bits (64), Expect = 6.4
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 17/62 (27%)
Query: 163 KVFLAQKQMIAKCNKVGKPVICATQMLESM---------IKKPRATRAEISDVANAVLDG 213
KVFL + ++ VGK M++++ I++ R T +++ + +LDG
Sbjct: 27 KVFLEEDAIVE--LGVGK------NMVKAIRYWLRATGLIEENRKTGLKLTPLGRLLLDG 78
Query: 214 AD 215
D
Sbjct: 79 ND 80
>gnl|CDD|214859 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate
mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
structurally related enzymes that catalyse reactions
involving the transfer of phospho groups between the
three carbon atoms of phosphoglycerate... Both enzymes
can catalyse three different reactions with different
specificities, the isomerization of 2-phosphoglycerate
(2-PGA) to 3-phosphoglycerate (3-PGA) with
2,3-diphosphoglycerate (2,3-DPG) as the primer of the
reaction, the synthesis of 2,3-DPG from 1,3-DPG with
3-PGA as a primer and the degradation of 2,3-DPG to
3-PGA (phosphatase activity). In mammals, PGAM is a
dimeric protein with two isoforms, the M (muscle) and B
(brain) forms. In yeast, PGAM is a tetrameric protein.
Length = 158
Score = 27.8 bits (62), Expect = 7.4
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 318 ARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVT 371
L R P + L D+ RV + G V++V+
Sbjct: 98 EEYLAAWRDPYDPAPPAPPGGESLADLVERVEPALD-ELIATADASGQNVLIVS 150
>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 328
Score = 27.9 bits (63), Expect = 8.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 267 AHSVAIAAVEAASKVFAGAIVVLTTTGTSAR 297
+ SV +AA++ A AGA V+ TT TS +
Sbjct: 154 SSSVGLAAIQIA--NAAGATVIATTR-TSEK 181
>gnl|CDD|212550 cd11712, GINS_A_psf2, Alpha-helical domain of GINS complex
protein Psf2 (partner of Sld5 2). Psf2 is a component
of GINS tetrameric protein complex and has been found
to play important roles in normal eye development in
Xenopus laevis. GINS is a complex of four subunits
(Sld5, Psf1, Psf2 and Psf3) that is involved in both
initiation and elongation stages of eukaryotic
chromosome replication. Besides being essential for the
maintenance of genomic integrity, GINS plays a central
role in coordinating DNA replication with cell cycle
checkpoints and is involved in cell growth. The
eukaryotic GINS subunits are homologous and homologs
are also found in the archaea; the complex is not found
in bacteria. The four subunits of the complex consist
of two domains each, termed the alpha-helical (A) and
beta-strand (B) domains. The A and B domains of
Sld5/Psf1 are permuted with respect to Psf1/Psf3.
Length = 119
Score = 26.8 bits (60), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 56 CTI-GPASVAVDMLEKIIETESNSDECSEKPR 86
C I P + V+ L++I+E E S+ S P
Sbjct: 4 CRIVPPDWLTVEYLKEILEEEKKSETFSPLPF 35
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 28.0 bits (63), Expect = 9.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 204 SDVANAVLDGADCVMLSGETAKG 226
S+V A++D AD VM +G TA G
Sbjct: 186 SEVGGAIVDNADYVMFTGSTATG 208
>gnl|CDD|131487 TIGR02434, CobF, precorrin-6A synthase (deacetylating). In the
aerobic cobalamin biosythesis pathway, four enzymes are
involved in the conversion of precorrin-3A to
precorrin-6A. The first of the four steps is carried out
by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding
precorrin-3B as the product. This is followed by three
methylation reactions, which introduce a methyl group at
C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and
C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise
to precorrin-4, precorrin-5 and precorrin-6A,
respectively. This model identifies CobF in High GC gram
positive, alphaproteobacteria and pseudomonas-related
species.
Length = 249
Score = 27.7 bits (62), Expect = 10.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 99 EPNLYESNVRLIEKLMATGEQGKHIKIIAKI 129
+P+LY+S +R++E+L A G ++I I
Sbjct: 112 DPSLYDSTLRILERLRALGGVPFDYEVIPGI 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.403
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,349,244
Number of extensions: 1963930
Number of successful extensions: 2185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2155
Number of HSP's successfully gapped: 70
Length of query: 398
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 299
Effective length of database: 6,546,556
Effective search space: 1957420244
Effective search space used: 1957420244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)