RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy259
(398 letters)
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 460 bits (1187), Expect = e-161
Identities = 148/284 (52%), Positives = 196/284 (69%), Gaps = 2/284 (0%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
++V I +++ GEQGK +KII KIEN QGV N DEI+ DG+MVARGDLGIEIP +V
Sbjct: 219 NDVLTIREVL--GEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPEV 276
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
QK++IAK N GKPVICATQMLESM PR TRAE+SDV NA+LDGADCVMLSGETA
Sbjct: 277 LAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETA 336
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
KG+YP+ V M T AE AI + ++++ P P + +VA +AV A + A
Sbjct: 337 KGNYPINAVTTMAETAVIAEQAIAYLPNYDDMRNCTPKPTSTTETVAASAVAAVFEQKAK 396
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
AI+VL+T+GT+ RL+SKYRP CPII VTR P+ AR HL+R + P V+E+ +DW DV
Sbjct: 397 AIIVLSTSGTTPRLVSKYRPNCPIILVTRCPRAARFSHLYRGVFPFVFEKEPVSDWTDDV 456
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYV 388
+ R+ GI+ ++ L +GD + + G+K GAG +NT+++ V
Sbjct: 457 EARINFGIEKAKEFGILKKGDTYVSIQGFKAGAGHSNTLQVSTV 500
Score = 55.0 bits (133), Expect = 2e-08
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 32 TFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIE 73
+ ++ L L++ S R T II TIGP + + L + +
Sbjct: 2 SRLERLTSLNVVAGSDL-RRTSIIGTIGPKTNNPETLVALRK 42
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 458 bits (1182), Expect = e-160
Identities = 135/284 (47%), Positives = 185/284 (65%), Gaps = 3/284 (1%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
V + K + G +G+ I II KIENHQGV+N+D II E+DGIMVARGDLG+EIP KV
Sbjct: 218 EQVGDVRKAL--GPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKV 275
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
+AQK +I+KCN GKPVICATQMLESM PR TRAE+SDVANAV +GADCVMLSGETA
Sbjct: 276 VVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETA 335
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
KG YP E V+ M C EA++A+ +K + +P+ + +V +AV + + A
Sbjct: 336 KGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAK 395
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
A+VVL+ TG SARL++KYRP CPI+ VT Q RQL++ + + + ++
Sbjct: 396 AMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDAD-KLGHDEGK 454
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYV 388
+ RVA G+++ + + ++ GD +V+ K G+ N RI+ V
Sbjct: 455 EHRVAAGVEFAKSKGYVQTGDYCVVIHADHKVKGYANQTRILLV 498
Score = 57.6 bits (140), Expect = 3e-09
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 32 TFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIE 73
+ + H L I + + R IICTIGP++ +V+ L+ +I+
Sbjct: 2 SQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQ 43
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A
1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A*
1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A*
2vgg_A* ...
Length = 550
Score = 458 bits (1180), Expect = e-159
Identities = 173/284 (60%), Positives = 217/284 (76%), Gaps = 2/284 (0%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
S+V + K++ GE+GK+IKII+KIENH+GV+ DEI+ +DGIMVARGDLGIEIP KV
Sbjct: 268 SDVHEVRKVL--GEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKV 325
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
FLAQK MI +CN+ GKPVICATQMLESMIKKPR TRAE SDVANAVLDGADC+MLSGETA
Sbjct: 326 FLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETA 385
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
KGDYP+E VR H +EAEAAI+H +L EL+ + P+ D + A+ AVEA+ K +G
Sbjct: 386 KGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSG 445
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
AI+VLT +G SA +++YRPR PII+VTR PQ ARQ HL+R I P++ ++P W DV
Sbjct: 446 AIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAEDV 505
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYV 388
D RV + G+ R F +GD VIV+TGW+ G+GFTNT+R+V V
Sbjct: 506 DLRVNFAMNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMRVVPV 549
Score = 67.4 bits (165), Expect = 2e-12
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 17 DGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIE 73
++ QL A A+TF++H+C LDID+ R TGIICTIGPAS +V+ L+++I+
Sbjct: 29 TAFIQTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKEMIK 85
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 448 bits (1156), Expect = e-156
Identities = 140/285 (49%), Positives = 186/285 (65%), Gaps = 9/285 (3%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
+VR I L+ G +G+HI+II KIEN +G+ N DEI+AEADGIM+ARGDLG+EIPP KV
Sbjct: 234 DDVRYIRGLL--GPRGRHIRIIPKIENVEGLVNFDEILAEADGIMIARGDLGMEIPPEKV 291
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
FLAQK MIAKCN VGKPVI ATQMLESMIK PR TRAE +DVANAVLDG DCVMLSGETA
Sbjct: 292 FLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADVANAVLDGTDCVMLSGETA 351
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
G++PV V M C EAE + + L + +P PI + +VA AAVE A V A
Sbjct: 352 NGEFPVITVETMARICYEAETCVDYPALYRAMCLAVPPPISTQEAVARAAVETAECVNAA 411
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
I+ LT TG +ARLI+KYRP PI++++ + L + R + +
Sbjct: 412 IILALTETGQTARLIAKYRPMQPILALSASESTIKHLQVIRGVTTMQVPSFQ------GT 465
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVYV 388
D + + I ++R+ + +G+ ++ V G K+ AG +N ++++ V
Sbjct: 466 DHVIRNAIVVAKERELVTEGESIVAVHGMKEEVAGSSNLLKVLTV 510
Score = 46.0 bits (110), Expect = 1e-05
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 30 ANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIE 73
+ + + + T I+CT+GPA VD L K+I+
Sbjct: 17 QGIRMSQILEPRSEEDWTA-HRTRIVCTMGPACWNVDTLVKMID 59
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 448 bits (1154), Expect = e-155
Identities = 137/285 (48%), Positives = 185/285 (64%), Gaps = 9/285 (3%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
+VRLI L+ G +G+HIKII KIEN +G+ + D+I+AE+DGIM+ARGDLG+EI P KV
Sbjct: 243 DDVRLIRNLL--GPRGRHIKIIPKIENIEGIIHFDKILAESDGIMIARGDLGMEISPEKV 300
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
FLAQK MI+KCN GKP+I ATQMLESM K PR TRAE++DVANAVLDG DCVMLSGETA
Sbjct: 301 FLAQKLMISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANAVLDGTDCVMLSGETA 360
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
G +PVE V M C EAEA I + L L + + PI +VA +AVE A + A
Sbjct: 361 GGKFPVEAVTIMSKICLEAEACIDYKLLYQSLVNAIETPISVQEAVARSAVETAESIQAS 420
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
I+ LT TG +ARLI+KY+P C I++++ + L++HR + + +
Sbjct: 421 LIIALTETGYTARLIAKYKPSCTILALSASDSTVKCLNVHRGVTCIKVG------SFQGT 474
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVYV 388
D + + I+ + R GD VI + G K+ +G TN +++V +
Sbjct: 475 DIVIRNAIEIAKQRNMAKVGDSVIAIHGIKEEVSGGTNLMKVVQI 519
Score = 59.1 bits (144), Expect = 1e-09
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 19 YVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIE 73
Y + ++ + + L+ +N + + T I+CT+GPA +V+ L K+I+
Sbjct: 15 YFQGAAGASMQSAANITLRQILEPNNVNLRSKKTHIVCTLGPACKSVETLVKLID 69
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 440 bits (1135), Expect = e-153
Identities = 115/284 (40%), Positives = 158/284 (55%), Gaps = 11/284 (3%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
S+V I + + G++I II+KIEN +G+ N DEI+ +DGIMVARGDLG+EIP +V
Sbjct: 198 SDVIEIREHLK-AHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEV 256
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
AQK MI KC + K VI AT ML+SMIK PR T AE DVANA+LDG D VMLSGE+A
Sbjct: 257 IFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESA 316
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
KG YP+E V M C+ + + + +V AVE A K+ A
Sbjct: 317 KGKYPLEAVSIMATICERTDRVMNSRLEFNNDNR----KLRITEAVCRGAVETAEKLDAP 372
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
IVV T G SAR + KY P I+++T + A QL L + ++P + +E +
Sbjct: 373 LIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEIT------ST 426
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIVYV 388
D G + ++GD V++V+G +G TNT + +
Sbjct: 427 DDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL 470
Score = 42.1 bits (100), Expect = 2e-04
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 49 VRLTGIICTIGPASVAVDMLEKIIE 73
++ T I+CTIGP + + +ML K+++
Sbjct: 1 MKKTKIVCTIGPKTESEEMLAKMLD 25
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 437 bits (1125), Expect = e-151
Identities = 131/290 (45%), Positives = 180/290 (62%), Gaps = 12/290 (4%)
Query: 105 SNVRLIEKLMA-----TGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEI 159
++V+L ++++ + IKII+KIEN +GV N D I +E+DGIMVARGDLG+EI
Sbjct: 250 ADVQLCRQIISENTQYSNGIPSSIKIISKIENLEGVINFDSICSESDGIMVARGDLGMEI 309
Query: 160 PPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 219
PP K+F+AQK MI+KCN GKPV+ ATQMLESMIK R TRAE++DVANAVLDG+DCVML
Sbjct: 310 PPEKIFVAQKCMISKCNVAGKPVVTATQMLESMIKSNRPTRAEMTDVANAVLDGSDCVML 369
Query: 220 SGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAAS 279
SGETA G +P + V M C +AE I + L + S +P P+ ++A +AVE+A
Sbjct: 370 SGETANGAFPFDAVNVMSRVCAQAETCIDYPVLYHAIHSSVPKPVAVPEAIACSAVESAH 429
Query: 280 KVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPAD 339
V A I+ +T TG +ARLISKYRP II+ T P+VAR L + R + V
Sbjct: 430 DVNAKLIITITETGNTARLISKYRPSQTIIACTAKPEVARGLKIARGVKTYVLNSIH--- 486
Query: 340 WLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVYV 388
+ +++ + ++ + GD I V G K+ G N ++IV
Sbjct: 487 ---HSEVVISNALALAKEESLIESGDFAIAVHGVKESCPGSCNLMKIVRC 533
Score = 49.2 bits (118), Expect = 2e-06
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 23 SQLRALAANTFVDHLC-GLDID-----NKSSYVRLTGIICTIGPASVAVDMLEKIIE 73
+ A+ + T C G+D + R T IICTIGP+ V+ L +I+
Sbjct: 19 ASTSAVMSCTLGKATCLGMDKICSPLADNDVTQRKTQIICTIGPSCNNVESLIGLID 75
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 432 bits (1113), Expect = e-148
Identities = 121/289 (41%), Positives = 173/289 (59%), Gaps = 11/289 (3%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
S+V I +++ EQ +I + KIEN +G+ N++EI+ +DG+MVARGD+G+EIPP KV
Sbjct: 219 SDVLEIREIL--EEQKANISVFPKIENQEGIDNIEEILEVSDGLMVARGDMGVEIPPEKV 276
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
+ QK +I +CNK+GKPVI ATQML+SM + PRATRAE SDVANA+ DG D VMLSGETA
Sbjct: 277 PMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETA 336
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
G YP E V+ M N AEAA + KLL++ + +++ I+ A +
Sbjct: 337 AGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTK--LVETSLVNAIGISVAHTALNLNVK 394
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
AIV T +G++AR ISKYRP II+VT + ARQ + + P+V + +
Sbjct: 395 AIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGR------KST 448
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVYVSDNL 392
D + + + + + GD +I+ G G G TN ++I V D +
Sbjct: 449 DALLNNAVATAVETGRVTNGDLIIITAGVPTGETGTTNMMKIHLVGDEI 497
Score = 60.7 bits (148), Expect = 4e-10
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 28 LAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIE 73
+ ++ H + S +R T I+CTIGPAS + +M+EK+I
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMMRKTKIVCTIGPASESEEMIEKLIN 46
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 415 bits (1068), Expect = e-141
Identities = 118/289 (40%), Positives = 163/289 (56%), Gaps = 10/289 (3%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
S+V I +L+ HI+IIAKIEN +GV N+DEI+ ADG+MVARGDLG+EIP +V
Sbjct: 199 SDVLEIRELLE-AHDALHIQIIAKIENEEGVANIDEILEAADGLMVARGDLGVEIPAEEV 257
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
L QK +I K N +GKPVI ATQML+SM + PR TRAE SDVANA+ DG D VMLSGETA
Sbjct: 258 PLIQKLLIKKSNMLGKPVITATQMLDSMQRNPRPTRAEASDVANAIFDGTDAVMLSGETA 317
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
G YPVE V+ MH E A+ H +L++ ++ + A +
Sbjct: 318 AGQYPVEAVKTMHQIALRTEQALEHRDILSQRTK--ESQTTITDAIGQSVAHTALNLDVA 375
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
AIV T +G + ++++KYRP+ PII+VT V+R+L L + +
Sbjct: 376 AIVTPTVSGKTPQMVAKYRPKAPIIAVTSNEAVSRRLALVWGVYTKEAPHVN------TT 429
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKG-AGFTNTVRIVYVSDNL 392
D + + + GD V++ G G G TN +++ +SD L
Sbjct: 430 DEMLDVAVDAAVRSGLVKHGDLVVITAGVPVGETGSTNLMKVHVISDLL 478
Score = 40.6 bits (96), Expect = 7e-04
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 50 RLTGIICTIGPASVAVDMLEKIIE 73
R T I+ TIGPAS +VD L +++E
Sbjct: 3 RKTKIVSTIGPASESVDKLVQLME 26
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 336 bits (863), Expect = e-112
Identities = 81/281 (28%), Positives = 130/281 (46%), Gaps = 30/281 (10%)
Query: 105 SNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKV 164
+V + L+ E G ++ KIE V NL+E++ +D ++VARGDLG+ +
Sbjct: 209 KDVDSVRSLLT--ELGFQSQVAVKIETKGAVNNLEELVQCSDYVVVARGDLGLHYGLDAL 266
Query: 165 FLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETA 224
+ Q++++ K GKP+ ATQ+L+SM P TRAEI+DV G D + L+ ETA
Sbjct: 267 PIVQRRIVHTSLKYGKPIAVATQLLDSMQSSPIPTRAEINDVFTTASMGVDSLWLTNETA 326
Query: 225 KGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAG 284
G YP+ V + E I + PL +S A VE A + A
Sbjct: 327 SGKYPLAAVSWLSRILMNVEYQIPQS----------PLLQNSRDRFAKGLVELAQDLGA- 375
Query: 285 AIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIPLVYEEPSPADWLRDV 344
I+V + +GT AR I+K+RPR + T +VAR L + ++ PL + + L +
Sbjct: 376 NILVFSMSGTLARRIAKFRPRGVVYVGTPNVRVARSLSIVWALEPLYIPAENYEEGLEKL 435
Query: 345 DTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRI 385
+ P + G + G ++V++
Sbjct: 436 -ISLK-------------GTTPFVATYGIR---GGVHSVKV 459
Score = 32.9 bits (76), Expect = 0.16
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 50 RLTGIICTIGPAS--VAVDMLEKIIE 73
LT + T+GP++ + D L K ++
Sbjct: 15 NLTKRVATLGPSTDVLRPDELIKFLD 40
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 4e-09
Identities = 63/426 (14%), Positives = 125/426 (29%), Gaps = 182/426 (42%)
Query: 10 YVDPLEVDGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLE 69
YV ++ G+ P +LR +L G G++ +VA+
Sbjct: 249 YVVTAKLLGF-TPGELR--------SYLKGA-------TGHSQGLV-----TAVAI---- 283
Query: 70 KIIETESNSDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKI 129
E++S E + + S + I L G +
Sbjct: 284 ----AETDSWE--------------------SFFVSVRKAITVLFFIG-----------V 308
Query: 130 ENHQGV-------KNLDEIIAEADGI---MVA-RGDLGIEIPPWKVFLAQKQ---MIAKC 175
++ L++ + +G+ M++ L Q+Q + K
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN------------LTQEQVQDYVNKT 356
Query: 176 NKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRA 235
N P + EIS + N GA +++SG P + +
Sbjct: 357 NS----------------HLPAGKQVEIS-LVN----GAKNLVVSG-------PPQSLYG 388
Query: 236 MHNTCKEAEAAI--------------------------WHTKLLTELKSMLPLPIDSAHS 269
++ T ++A+A +H+ LL ++ + ++
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL-VKNN 447
Query: 270 VAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRSIIP 329
V+ A + V+ T G+ R++S S++ I+
Sbjct: 448 VSFNAKDIQIPVYD------TFDGSDLRVLSG--------SIS------------ERIVD 481
Query: 330 LVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVI--VVTGWKKGAGFTNTVRIVY 387
+ P W + H + +G G + + K G G VR++
Sbjct: 482 CIIRL--PVKWETTTQFKATHILDFGPG------GASGLGVLTHRNKDGTG----VRVIV 529
Query: 388 VSDNLD 393
LD
Sbjct: 530 AGT-LD 534
Score = 31.2 bits (70), Expect = 0.84
Identities = 40/246 (16%), Positives = 65/246 (26%), Gaps = 90/246 (36%)
Query: 185 ATQMLESMIKK-PRATRAEISD---VANAVLDG------ADCVMLSGETAKGDYPVECVR 234
A+Q+ E K P T +D A L G + V + G + + +
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE---PSKVGQFD-QVLN 85
Query: 235 AMHNTCKEAEAAIW-----HT---KLLTE-----------LKS------MLPLPIDSAHS 269
E E H KLL E +K+ M P D +
Sbjct: 86 LCLT---EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 270 VAI--AAVEAASKVFA-----GAIVV----LTTTGTSARLISKYRPRCPIISVTRFPQVA 318
A+ A E +++ A G L L Y V + +
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEEL------RDLYQTYHVL-----VGDLIKFS 191
Query: 319 RQLHLHRSIIPLVYEEPSPA----------DWLRDVDTRVAHGIKYGRDRKFLNQGD--- 365
+ + L+ +WL + D+ +L
Sbjct: 192 AET-----LSELIRTTLDAEKVFTQGLNILEWLENPSNT--------PDKDYLLSIPISC 238
Query: 366 PVIVVT 371
P+I V
Sbjct: 239 PLIGVI 244
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 2e-07
Identities = 50/346 (14%), Positives = 103/346 (29%), Gaps = 94/346 (27%)
Query: 9 AYVDPLEVDGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDML 68
A+VD + V +++ + +DH+ + RL + + + +
Sbjct: 28 AFVDNFDCK-DVQDM-PKSILSKEEIDHIIMSKDAVSGTL-RLFWTLLS-KQEEMVQKFV 83
Query: 69 EKIIETESN--SDECSEKPRECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKII 126
E+++ + R+ PS + ++ + ++ ++ K + Q ++K+
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKL- 140
Query: 127 AKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICAT 186
Q + L A +++ G LG GK
Sbjct: 141 -----RQALLELRP----AKNVLI-DGVLGS---------------------GKTW---- 165
Query: 187 QMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMH------NTC 240
VA V Y V+C C
Sbjct: 166 -------------------VALDVCL--------------SYKVQCKMDFKIFWLNLKNC 192
Query: 241 KEAEAAIWH-TKLLTELKSMLPLPIDSAHSVAIAAVEA--------ASKVFAGAIVVLTT 291
E + KLL ++ D + ++ + SK + ++VL
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 292 TGTSARLISKYRPRCPIISVTRFPQVARQLH-LHRSIIPLVYEEPS 336
+A+ + + C I+ TRF QV L + I L + +
Sbjct: 253 V-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Score = 33.7 bits (76), Expect = 0.11
Identities = 35/229 (15%), Positives = 69/229 (30%), Gaps = 47/229 (20%)
Query: 13 PLEVDGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGII----------------- 55
P EV P + ++ A + D L D + +LT II
Sbjct: 319 PREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 56 -CTIGPASVAV--DMLEKIIETESNSDECSEKPRECPS------EPEPPHCKEPNLYESN 106
++ P S + +L +I + + + +P+ P++Y
Sbjct: 377 RLSVFPPSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--- 432
Query: 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADG-----IM-----VARGDLG 156
L K+ E H I+ + + D I D I + +
Sbjct: 433 --LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 157 IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISD 205
VFL + + K A+ + + +++ + + I D
Sbjct: 491 TLFR--MVFLDFRFLEQKIRHDSTA-WNASGSILNTLQQLKFYKPYICD 536
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II
aldolase, homoprotocatechuate, aromatic DEGR aromatic
hydrocarbons catabolism; 1.60A {Escherichia coli} PDB:
2v5k_A
Length = 287
Score = 41.5 bits (98), Expect = 2e-04
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 121 KHIKIIAKIENHQGVKNLDEIIA--EADGIMVARGDLGIEI-PPW-----KVFLAQKQMI 172
+ ++ +IE + +KNL +I+ DG+ + DL ++ +V A +Q I
Sbjct: 165 DQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAI 224
Query: 173 AKCNKVGKPV 182
+ + GK
Sbjct: 225 VQIRESGKAP 234
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A
{Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Length = 256
Score = 41.5 bits (98), Expect = 2e-04
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 121 KHIKIIAKIENHQGVKNLDEIIA--EADGIMVARGDLGIEI-PPW-----KVFLAQKQMI 172
K+I I+ +IE+ QGV N+D I A DGI V DL + V A + +
Sbjct: 144 KNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIF 203
Query: 173 AKCNKVGKPV 182
+ + GKP
Sbjct: 204 NRASAHGKPS 213
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel,
pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma
commelinae} SCOP: c.1.12.5
Length = 339
Score = 41.7 bits (98), Expect = 3e-04
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 122 HIKIIAKIENHQGVKNLDEIIA--EADGIMVARGDL----GIEIPPW-------KVFLAQ 168
H+ II +IE+ +GV+N+D I A E G+M GD G+++ A
Sbjct: 177 HVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAM 236
Query: 169 KQMIAKCNKVGKPV 182
+ + G P+
Sbjct: 237 TKFSTAAQRNGVPI 250
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; 2.00A {Desulfitobacterium hafniense}
Length = 261
Score = 41.1 bits (97), Expect = 3e-04
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 121 KHIKIIAKIENHQGVKNLDEIIA--EADGIMVARGDLGIEI-PPW-----KVFLAQKQMI 172
I I+A+IE+ + V+++D I+A D ++ DL ++ KV+ +++
Sbjct: 142 DEIFIMAQIEHVKAVEDIDSILAVQGVDAVIFGPRDLSNDLGIIGQTEHPKVYECYEKVY 201
Query: 173 AKCNKVGKPV 182
++ G
Sbjct: 202 RAADRQGVVK 211
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12
protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of
homoprotocatechuate; 1.39A {Escherichia coli} PDB:
2vwt_A
Length = 267
Score = 41.1 bits (97), Expect = 3e-04
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 125 IIAKIENHQGVKNLDEIIA--EADGIMVARGDLGIEI-PPW-----KVFLAQKQMIAKCN 176
++ ++E+ + NLDEI+ DG+ + DL + P +V + I +
Sbjct: 148 LLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIR 207
Query: 177 KVGKPV 182
GK
Sbjct: 208 AAGKAA 213
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.002
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 251 KLLTELKSMLPLPIDSAHSVAI-AAVE 276
KL LK DSA ++AI A +E
Sbjct: 24 KLQASLKLYAD---DSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 2.0
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 21/48 (43%)
Query: 168 QKQMIAKCNKVGKPVICATQMLESMIKK--PRATRAEISDVA-NAVLD 212
+KQ + K L++ +K + A +A A ++
Sbjct: 18 EKQALKK--------------LQASLKLYADDSAPA----LAIKATME 47
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7;
2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1
PDB: 2p0m_A*
Length = 662
Score = 31.8 bits (71), Expect = 0.46
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 367 VIVVTGWKKGAGFTNTVRIVYVSDNLDEYLHN 398
V V TG AG N V + V + + L +
Sbjct: 5 VCVSTGASIYAGSKNKVELWLVGQHGEVELGS 36
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; 2.24A {Burkholderia xenovorans}
Length = 339
Score = 30.7 bits (70), Expect = 0.78
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIE 158
V IE + + + +E H + + + +A G V G+
Sbjct: 129 VAFIEATRRELGIAQPVPVQLLVETHGALTRVFD-LAALPG--VEALSFGLM 177
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: MSE; 2.44A {Ralstonia
eutropha}
Length = 332
Score = 30.8 bits (70), Expect = 0.83
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEA--DGIMVARGDL 155
+R I + K + + IE H ++++ +I + + D
Sbjct: 130 IRYIGDVAKRAGLDKPVPVHVLIETHGALRDVFQIAELPNIEVLDFGLMDF 180
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A
{Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
Length = 691
Score = 30.6 bits (68), Expect = 1.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 367 VIVVTGWKKGAGFTNTVRIVYVSDN 391
V V TG ++ AG + + + V
Sbjct: 26 VTVATGSQEHAGTDDYIYLSLVGSA 50
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain,
non-heme iron, conformational change, dioxygenase,
oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}
Length = 698
Score = 29.9 bits (66), Expect = 1.6
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 367 VIVVTGWKKGAGFTNTVRIVYVSDNLDE 394
+ V TG +GAG +V I + E
Sbjct: 24 ITVETGDLRGAGTDASVSIKLTGKDGAE 51
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism,
dioxygenase, fatty ACI biosynthesis, heme, iron, lipid
synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla}
PDB: 3fg4_A* 3fg3_A* 2fnq_A
Length = 696
Score = 29.9 bits (66), Expect = 1.7
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 367 VIVVTGWKKGAGFTNTVRIVYVSDN 391
V V TG ++ AG T+ I
Sbjct: 11 VEVETGDREHAGTDATITIRITGAK 35
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2
d.41.2.2
Length = 441
Score = 29.3 bits (66), Expect = 2.6
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 22/86 (25%)
Query: 332 YEEPSPADWLRDVDT---RVAHGIKYGRDRKFLNQ---------------GDPVI----V 369
+ + W+ +A +G D + GDPV +
Sbjct: 260 ANKNAMDCWINTFGAKNAGLALTDTFGTDDFLKSFRPPYSDAYVGVRQDSGDPVEYTKKI 319
Query: 370 VTGWKKGAGFTNTVRIVYVSDNLDEY 395
+ +I+ SD+L+
Sbjct: 320 SHHYHDVLKLPKFSKIICYSDSLNVE 345
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase;
HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6
c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A*
1n1g_A*
Length = 366
Score = 28.7 bits (65), Expect = 4.1
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 31/121 (25%)
Query: 137 NLDEIIAEADGIMVA------RGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLE 190
++++ A+ I+ RG L A + PV+ T+ +E
Sbjct: 78 DVEKAYNGAEIILFVIPTQFLRGFFE----KSGGNLI-----AYAKEKQVPVLVCTKGIE 128
Query: 191 SMIKKPRATRAEISDVANAVLDGADCVMLSG-----ETAKGDYPVECVRAMHNTCKEAEA 245
R+T +++ L +L+G E A G A +
Sbjct: 129 ------RSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGV-FTCVSIA----SADINV 177
Query: 246 A 246
A
Sbjct: 178 A 178
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385,
deazaflavin-dependent reduct F420-dependent reductase,
FDR; HET: F42; 1.50A {Nocardia farcinica}
Length = 145
Score = 27.7 bits (61), Expect = 4.5
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 328 IPLVYE-EPSPADWLRD-VDTRVAHGIKYGRDRKFLNQGDPVIVVT--GWKKGAGFTNTV 383
+PL E EPSP+DW R V+T G G QG PV+V+T G K G +
Sbjct: 2 MPLTGEYEPSPSDWARKQVETYENSGGTEGTTL----QGKPVVVLTTKGAKTGKLRKTPL 57
Query: 384 RIVYVSDNL 392
V +
Sbjct: 58 MRVEHNGEY 66
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Length = 316
Score = 28.0 bits (63), Expect = 5.1
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 107 VRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEAD---GIMVARGDL 155
++++++LM G ++I IE+ +G+ ++ I A G++ D+
Sbjct: 144 LQILDRLMM--FAGSDTRLIGIIESVRGLNAVESIAAATPKLAGLIFGAADM 193
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI,
protein structure initiative; 1.90A {Vibrio cholerae}
Length = 361
Score = 28.0 bits (63), Expect = 5.4
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 364 GDPVIVVTGWKKGAGFTNTVRIVYVSDNLDEYLH 397
GD ++V AG N + I + S YLH
Sbjct: 249 GDGKVIVVRKHPYAG--NYLVIEHNSVYKTRYLH 280
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 27.7 bits (61), Expect = 5.6
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 17/101 (16%)
Query: 121 KHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGK 180
+ +A + + + I I P + LA M+ + + G
Sbjct: 128 HGLLAMADCSTVNEGISCHQ--KGIEFIGTTLSGYTGPITPVEPDLA---MVTQLSHAGC 182
Query: 181 PVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSG 221
VI E P ANA+ GA V +
Sbjct: 183 RVIA-----EGRYNTPA-------LAANAIEHGAWAVTVGS 211
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC,
PSI, protein structure initiative; 2.20A {Porphyromonas
gingivalis}
Length = 394
Score = 27.8 bits (62), Expect = 6.2
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 361 LNQGDPVI----VVTGWKKGAGFTNTVRIVYVSDNLDEY 395
+ GDP I V +++ I++ SD+L
Sbjct: 274 HDSGDPEIFIEKAVRRYEELRVDPKIKYIIF-SDSLTPQ 311
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 27.9 bits (63), Expect = 6.5
Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 25/115 (21%)
Query: 137 NLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKP 196
+L + I++ P F + + T+ L
Sbjct: 92 DLKASLEGVTDILIV--------VPSFAFHEVITRMKPLIDAKTRIAWGTKGLA------ 137
Query: 197 RATRAEISDVANAVLDGADCVMLSG-----ETAKGDYPVECVRAMHNTCKEAEAA 246
+ +R + +V L ++SG E A P A ++ +
Sbjct: 138 KGSRL-LHEVVATELGQVPMAVISGPSLATEVAANL-PTAVSLA----SNNSQFS 186
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A
{Neisseria meningitidis}
Length = 371
Score = 27.7 bits (62), Expect = 6.7
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 364 GDPVIVVTGWKKGAGFTNTVRIVYVSDNLDEYLH 397
D VI G K G G N V I + + Y H
Sbjct: 263 ADGVITFKGRKGGYG--NAVMIRHANGVETLYAH 294
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 27.4 bits (60), Expect = 7.3
Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 17/99 (17%)
Query: 121 KHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGK 180
H+ +A + AD I P + L ++ + G
Sbjct: 128 HHLLTMADCSSVDDGLACQR--LGADIIGTTMSGYTTPDTPEEPDLP---LVKALHDAGC 182
Query: 181 PVICATQMLESMIKKPRATRAEISDVANAVLDGADCVML 219
VI E P + A A+ GA V +
Sbjct: 183 RVIA-----EGRYNSP-------ALAAEAIRYGAWAVTV 209
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Length = 201
Score = 27.2 bits (60), Expect = 8.9
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 269 SVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVT 312
AVE A ++ +VV ++ G +A + ++ VT
Sbjct: 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVT 73
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
transferase; 2.00A {Thermus thermophilus HB8} SCOP:
b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Length = 228
Score = 27.1 bits (61), Expect = 9.7
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 324 HRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTG 372
R ++P V + VAH R R+ L+ P+ + G
Sbjct: 133 GRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVG 181
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.403
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,303,608
Number of extensions: 390367
Number of successful extensions: 1230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1211
Number of HSP's successfully gapped: 63
Length of query: 398
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 302
Effective length of database: 4,021,377
Effective search space: 1214455854
Effective search space used: 1214455854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.8 bits)