RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy259
(398 letters)
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 282
Score = 229 bits (584), Expect = 1e-73
Identities = 139/277 (50%), Positives = 166/277 (59%), Gaps = 47/277 (16%)
Query: 24 QLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKII----------- 72
QL A A+TF++H C LDID+ R TGIICTIGPAS +V+ L+++I
Sbjct: 5 QLHAAMADTFLEHKCRLDIDSAPITARNTGIICTIGPASRSVETLKEMIKSGMNVARMNF 64
Query: 73 ---------ETESNSDECSEKPRECPSEPEPPHCKEPNLYE------------------- 104
ET N +E P P
Sbjct: 65 SHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAVSEKDIQDLKFGVEQDVD 124
Query: 105 ----SNVR----LIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLG 156
S +R + E GE+GK+IKII+KIENH+GV+ DEI+ +DGIMVARGDLG
Sbjct: 125 MVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLG 184
Query: 157 IEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADC 216
IEIP KVFLAQK +I +CN+ GKPVICATQMLESMIKKPR TRAE SDVANAVLDGADC
Sbjct: 185 IEIPAEKVFLAQKMIIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADC 244
Query: 217 VMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLL 253
+MLSGETAKGDYP+E VR H +EAEAA++H KL
Sbjct: 245 IMLSGETAKGDYPLEAVRMQHLIAREAEAAMFHRKLF 281
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal
domain {Leishmania mexicana [TaxId: 5665]}
Length = 258
Score = 210 bits (536), Expect = 9e-67
Identities = 109/258 (42%), Positives = 144/258 (55%), Gaps = 42/258 (16%)
Query: 32 TFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETESN-------------- 77
+ + H L I + + R IICTIGP++ +V+ L+ +I++ +
Sbjct: 1 SQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYH 60
Query: 78 -------SDECSEKPRECPSEPEPPHCKEPNLYE-----------------SNVR----L 109
+E + + + S +R +
Sbjct: 61 QTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQV 120
Query: 110 IEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQK 169
+ A G +G+ I II KIENHQGV+N+D II E+DGIMVARGDLG+EIP KV +AQK
Sbjct: 121 GDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQK 180
Query: 170 QMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYP 229
+I+KCN GKPVICATQMLESM PR TRAE+SDVANAV +GADCVMLSGETAKG YP
Sbjct: 181 ILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYP 240
Query: 230 VECVRAMHNTCKEAEAAI 247
E V+ M C EA++A+
Sbjct: 241 NEVVQYMARICLEAQSAL 258
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 265
Score = 199 bits (506), Expect = 4e-62
Identities = 107/265 (40%), Positives = 134/265 (50%), Gaps = 47/265 (17%)
Query: 32 TFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETESN-------------- 77
+ ++ L L++ S R T II TIGP + + L + + N
Sbjct: 2 SRLERLTSLNVVAGSDL-RRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYH 60
Query: 78 ---------SDECSEKPRECPSEPEPPHCKEPNLYE---------------------SNV 107
S+E + E ++V
Sbjct: 61 KSVIDNARKSEELYPGRPLAIALDTKGPALSEKDKEDLRFGVKNGVHMVFASFIRTANDV 120
Query: 108 RLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLA 167
I +++ EQGK +KII KIEN QGV N DEI+ DG+MVARGDLGIEIP +V
Sbjct: 121 LTIREVLG--EQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPEVLAV 178
Query: 168 QKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGD 227
QK++IAK N GKPVICATQMLESM PR TRAE+SDV NA+LDGADCVMLSGETAKG+
Sbjct: 179 QKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGN 238
Query: 228 YPVECVRAMHNTCKEAEAAIWHTKL 252
YP+ V M T AE AI +
Sbjct: 239 YPINAVTTMAETAVIAEQAIAYLPN 263
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 246
Score = 170 bits (431), Expect = 2e-51
Identities = 89/242 (36%), Positives = 120/242 (49%), Gaps = 42/242 (17%)
Query: 50 RLTGIICTIGPASVAVDMLEKIIET-----------------------------ESNSDE 80
+ T I+CTIGP + + +ML K+++ ++
Sbjct: 2 KKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTA 61
Query: 81 CSEKPRECPSEPEPPHCKEPNLYESNVRLI-------------EKLMATGEQGKHIKIIA 127
+ P+ E E V + + G++I II+
Sbjct: 62 AILLDTKGPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIIS 121
Query: 128 KIENHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQ 187
KIEN +G+ N DEI+ +DGIMVARGDLG+EIP +V AQK MI KC + K VI AT
Sbjct: 122 KIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATM 181
Query: 188 MLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAI 247
ML+SMIK PR T AE DVANA+LDG D VMLSGE+AKG YP+E V M C+ + +
Sbjct: 182 MLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVM 241
Query: 248 WH 249
Sbjct: 242 NS 243
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 140 bits (353), Expect = 3e-41
Identities = 56/134 (41%), Positives = 88/134 (65%)
Query: 255 ELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRF 314
++++ P P + +VA +AV A + A AI+VL+T+GT+ RL+SKYRP CPII VTR
Sbjct: 1 DMRNCTPKPTSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRC 60
Query: 315 PQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWK 374
P+ AR HL+R + P V+E+ +DW DV+ R+ GI+ ++ L +GD + + G+K
Sbjct: 61 PRAARFSHLYRGVFPFVFEKEPVSDWTDDVEARINFGIEKAKEFGILKKGDTYVSIQGFK 120
Query: 375 KGAGFTNTVRIVYV 388
GAG +NT+++ V
Sbjct: 121 AGAGHSNTLQVSTV 134
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 138 bits (349), Expect = 1e-40
Identities = 73/134 (54%), Positives = 92/134 (68%)
Query: 255 ELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRF 314
EL+ PL D AI AVEAA K A AI+VLTTTG SA+L+S+YRPR +I+VTR
Sbjct: 1 ELRRAAPLSRDPTEVTAIGAVEAAFKCCAAAIIVLTTTGRSAQLLSRYRPRAAVIAVTRS 60
Query: 315 PQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWK 374
Q ARQ+HL R + PL+Y EP A W DVD RV GI+ G+ R FL GD VIVVTGW+
Sbjct: 61 AQAARQVHLCRGVFPLLYREPPEAIWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWR 120
Query: 375 KGAGFTNTVRIVYV 388
G+G+TN +R++ +
Sbjct: 121 PGSGYTNIMRVLSI 134
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain
{Leishmania mexicana [TaxId: 5665]}
Length = 141
Score = 127 bits (319), Expect = 3e-36
Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Query: 252 LLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISV 311
+K + +P+ + +V +AV + + A A+VVL+ TG SARL++KYRP CPI+ V
Sbjct: 5 FFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCV 64
Query: 312 TRFPQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVT 371
T Q RQL++ + + + ++ + RVA G+++ + + ++ GD +V+
Sbjct: 65 TTRLQTCRQLNITQGVESVFFDADKLGHD-EGKEHRVAAGVEFAKSKGYVQTGDYCVVIH 123
Query: 372 GWKKGAGFTNTVRIVYV 388
K G+ N RI+ V
Sbjct: 124 ADHKVKGYANQTRILLV 140
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 135
Score = 124 bits (312), Expect = 3e-35
Identities = 63/134 (47%), Positives = 87/134 (64%)
Query: 255 ELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRF 314
EL D ++A+ +VEA+ K A A++VLT +G SA +++YRPR PII+VTR
Sbjct: 1 ELARASSQSTDLMEAMAMGSVEASYKCLAAALIVLTESGRSAHQVARYRPRAPIIAVTRN 60
Query: 315 PQVARQLHLHRSIIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWK 374
Q ARQ HL+R I P+V ++P W DVD RV + G+ R F +GD VIV+TGW+
Sbjct: 61 HQTARQAHLYRGIFPVVCKDPVQEAWAEDVDLRVNLAMNVGKARGFFKKGDVVIVLTGWR 120
Query: 375 KGAGFTNTVRIVYV 388
G+GFTNT+R+V V
Sbjct: 121 PGSGFTNTMRVVPV 134
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 117
Score = 105 bits (264), Expect = 2e-28
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 267 AHSVAIAAVEAASKVFAGAIVVLTTTGTSARLISKYRPRCPIISVTRFPQVARQLHLHRS 326
+V AVE A K+ A IVV T G SAR + KY P I+++T + A QL L +
Sbjct: 2 TEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKG 61
Query: 327 IIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVVTGWKKGAGFTNTVRIV 386
++P + +E + D G + ++GD V++V+G +G TNT +
Sbjct: 62 VVPQLVKEIT------STDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVH 115
Query: 387 YV 388
+
Sbjct: 116 VL 117
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae
[TaxId: 108330]}
Length = 299
Score = 35.9 bits (82), Expect = 0.006
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 20/113 (17%)
Query: 121 KHIKIIAKIENHQGVKNLDEIIAEAD------GIMVARGDLGIEI-------PPWKVFLA 167
H+ II +IE+ +GV+N+D I A + G D G+++ P A
Sbjct: 175 NHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEA 234
Query: 168 QKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLS 220
+ + G P+ + I A+ D LS
Sbjct: 235 MTKFSTAAQRNGVPIFG-------GALSVDMVPSLIEQGYRAIAVQFDVWGLS 280
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 198
Score = 31.2 bits (69), Expect = 0.16
Identities = 14/96 (14%), Positives = 29/96 (30%)
Query: 154 DLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDG 213
L + PW++ + + A +++G+ I + + RA ++ A G
Sbjct: 11 KLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYG 70
Query: 214 ADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWH 249
V + V +T H
Sbjct: 71 ECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLH 106
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 29.4 bits (65), Expect = 0.70
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 233 VRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTT 292
+ T EA A K L + ++P +S+H++A A + ++V+ +
Sbjct: 321 ADYVSITDDEALEAF---KTLCRHEGIIPAL-ESSHALAHALKMMREQPEKEQLLVVNLS 376
Query: 293 G 293
G
Sbjct: 377 G 377
>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 111
Score = 28.1 bits (62), Expect = 0.87
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 367 VIVVTGWKKGAGFTNTVRIVYVSDN 391
V V TG AG N V + V +
Sbjct: 5 VCVSTGASIYAGSKNKVELWLVGQH 29
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 27.8 bits (61), Expect = 1.4
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 269 SVAIAAVEAASKVF---AGAIVVLTTTGTSARLISKY---RPRCPIISVTRFPQVARQLH 322
S+ AAVE A + V++ G + ++K R ++ R + A +L
Sbjct: 6 SIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELA 65
Query: 323 LHRSIIPLVYEEPSPADWLRDV 344
+ ++E DV
Sbjct: 66 RDLGGEAVRFDELVDHLARSDV 87
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 259
Score = 28.5 bits (63), Expect = 1.5
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 154 DLGIEIPPWKVFLAQKQMIAKCNKVGKPVI 183
L ++ P A + + K ++G P++
Sbjct: 8 RLKLKQPANATVTAIEMAVEKAKEIGYPLV 37
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide
transformylase PurT, domain 2 {Escherichia coli [TaxId:
562]}
Length = 206
Score = 28.1 bits (61), Expect = 1.7
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 154 DLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQM 188
+L + ++ ++ +G P I M
Sbjct: 12 ELQLPTSTYRFADSESLFREAVADIGYPCIVKPVM 46
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 27.4 bits (61), Expect = 2.6
Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 37/154 (24%)
Query: 94 PPHCKEPNLYESNVRLI---EKLMATGEQG--------KHIKIIAKIENHQGVKNLDEII 142
P C +L E+ R+ L GE G +H++ + + DE++
Sbjct: 107 PFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELV 166
Query: 143 AEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAE 202
AEA + ++ EI + ++ A +
Sbjct: 167 AEAKQLGAPV-EVLREI-------------KRLGRLPVVNFAAGGV------------TT 200
Query: 203 ISDVANAVLDGADCVMLSGETAKGDYPVECVRAM 236
+D A + GAD V + K + P + RA+
Sbjct: 201 PADAALMMHLGADGVFVGSGIFKSENPEKYARAI 234
>d1buea_ e.3.1.1 (A:) beta-Lactamase, class A {Enterobacter cloacae,
NMC-A carbapenemase [TaxId: 550]}
Length = 265
Score = 27.4 bits (60), Expect = 3.2
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 327 IIPLVYEEPSPADWLRDVDTRVAHGIKYGRDRKFLNQGDPVIVV--TGWKKGAGFTNTVR 384
+ + ++ ++ G G R + +V TG G N
Sbjct: 164 SLKTLALGNILSEHEKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTANDYA 223
Query: 385 IVYVSDN 391
+V+ +
Sbjct: 224 VVWPKNR 230
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 275
Score = 27.5 bits (60), Expect = 3.2
Identities = 23/162 (14%), Positives = 44/162 (27%), Gaps = 22/162 (13%)
Query: 86 RECPSEPEPPHCKEPNLYESNVRLIEKLMATGEQGKHIKIIAKIENHQGVKNLDEIIAEA 145
+ +P L K + I+A++E LDE + A
Sbjct: 114 LFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRA 173
Query: 146 DGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLESMIKKPRATRAEISD 205
+ A D + + K + + K PV+ K + D
Sbjct: 174 EAYRNAGADAIL-MHSKKADPSDIEAFMKAWNNQGPVVIV------PTKYYKTPTDHFRD 226
Query: 206 VANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAI 247
+ G V+ + +RA + ++ I
Sbjct: 227 M------GVSMVI---------WANHNLRASVSAIQQTTKQI 253
>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain
{Clostridium absonum [TaxId: 29369]}
Length = 121
Score = 26.5 bits (58), Expect = 3.3
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 367 VIVVTGWKKGAGFTNTVRIVYVSDN 391
V++ T + AG N + + +
Sbjct: 11 VMIKTADVQDAGTDNYIYFGIETKD 35
>d1l7la_ b.18.1.16 (A:) PA-IL, galactose-binding lectin 1
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 121
Score = 26.2 bits (57), Expect = 3.4
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 343 DVDTRVAHG-IKYGRDRKFLNQGD 365
DV T VA G YG +K+ QGD
Sbjct: 24 DVITIVAAGWASYGPTQKWGPQGD 47
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 26.8 bits (58), Expect = 4.3
Identities = 19/163 (11%), Positives = 40/163 (24%), Gaps = 14/163 (8%)
Query: 131 NHQGVKNLDEIIAEADGIMVARGDLGIEIPPWKVFLAQKQMIAKCNKVGKPVICATQMLE 190
K L E + D + V G G+ + C G +
Sbjct: 156 QGTAAKELFEEVGPLDALFVCLGGGGLLSGSALAA---RHFAPNCEVYGVEPEAGNDGQQ 212
Query: 191 SMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT 250
S K +A G + + + +E +
Sbjct: 213 SFRKGSIVHIDTPKTIA-----DGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCL--- 264
Query: 251 KLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLTTTG 293
K ++ ++ ++ AA A + + + +G
Sbjct: 265 KFYAARMKIV---VEPTGCLSFAAARAMKEKLKNKRIGIIISG 304
>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain
{Clostridium perfringens, different strains [TaxId:
1502]}
Length = 121
Score = 25.7 bits (56), Expect = 4.7
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 367 VIVVTGWKKGAGFTNTVRIVYVSDN 391
+ T +K AG + + + +
Sbjct: 11 AYISTSGEKDAGTDDYMYFGIKTKD 35
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 26.5 bits (58), Expect = 5.3
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 154 DLGIEIPPWKVFLAQKQMIAKCNKVGKPVI 183
+G+E + ++ +A VG P I
Sbjct: 11 KIGLETARSGIAHTMEEALAVAADVGFPCI 40
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 26.0 bits (56), Expect = 7.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 99 EPNLYESNVRLIEKLMATG 117
E LYE +R +E L A G
Sbjct: 1 EKELYEKWMRTVEMLKAEG 19
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 26.0 bits (56), Expect = 9.5
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 231 ECVRAMHNTCKEAEAAIWHTKLLTELKSMLPLPIDSAHSVAIAAVEAASKVFAGAIVVLT 290
V + EA + L+ + L + +VA AV+AA ++ G V+
Sbjct: 275 RTVVDKWFKSNDEEAFTFARMLIAQEG--LLCGGSAGSTVA-VAVKAAQELQEGQRCVVI 331
Query: 291 TTGTSARLISKY 302
+ ++K+
Sbjct: 332 LPDSVRNYMTKF 343
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.403
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,507,803
Number of extensions: 70437
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 40
Length of query: 398
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,213,086
Effective search space: 377269746
Effective search space used: 377269746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.5 bits)