RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2590
(504 letters)
>gnl|CDD|163712 cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 3 catalases are the most
abundant subfamily and are found in all three kingdoms
of life; they have a relatively small subunit size of 43
to 75 kDa, and bind a protoheme IX (heme b) group buried
deep inside the structure. Clade 3 catalases also bind
NADPH as a second redox-active cofactor. They form
tetramers, and in eukaryotic cells, catalases are
located in peroxisomes.
Length = 429
Score = 305 bits (785), Expect = 2e-99
Identities = 106/175 (60%), Positives = 125/175 (71%), Gaps = 3/175 (1%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
VWPH+++PLIEVG+L L++NP NYFAEVEQ AFSPS+LVPGI SPDKMLQGRLFSY D
Sbjct: 235 VWPHKDYPLIEVGKLELNRNPENYFAEVEQAAFSPSNLVPGIGFSPDKMLQGRLFSYADA 294
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAF-NNQGGAPNYFPNSFSGPQESERGRLS 447
HR+RLG NY QLPVN P V NYQRDG M N GGAPNY PNSF GP E
Sbjct: 295 HRYRLGVNYHQLPVNRPKC-PVNNYQRDGAMRVDGNGGGAPNYEPNSFGGPPEDPEYAEP 353
Query: 448 TFAVSGDVARYNS-SDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNANDLIQY 501
VSGD RYN D+D+++Q + ++S+DER+RLV+NI G LK A + IQ
Sbjct: 354 PLPVSGDADRYNYRDDDDDYTQAGDLYRLVSEDERERLVENIAGHLKGAPEFIQE 408
Score = 141 bits (359), Expect = 2e-37
Identities = 59/120 (49%), Positives = 64/120 (53%), Gaps = 44/120 (36%)
Query: 58 FWDFISLRPESTH-QKRNPVTHLKDWDMFWDFISLRPESTHQDWDMFWDFISLRPESTHQ 116
F DFI H QKRNP T+LKD DMFWDF
Sbjct: 94 FPDFI-------HTQKRNPQTNLKDPDMFWDFW--------------------------- 119
Query: 117 DWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFKLVNAEGKAVYCKFHYK 176
SL PES HQ ILFSDRGIPDGYRHMNGYGSHTF LVNA+G+ + KFH+K
Sbjct: 120 ---------SLSPESLHQVTILFSDRGIPDGYRHMNGYGSHTFSLVNAKGERFWVKFHFK 170
Score = 68.3 bits (168), Expect = 3e-12
Identities = 23/34 (67%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
D + +Q KRNP T+LKD DMFWDF SL PES HQ
Sbjct: 96 DFIHTQ-KRNPQTNLKDPDMFWDFWSLSPESLHQ 128
Score = 39.1 bits (92), Expect = 0.005
Identities = 13/13 (100%), Positives = 13/13 (100%)
Query: 276 RIPERVVHAKGAG 288
RIPERVVHAKGAG
Sbjct: 1 RIPERVVHAKGAG 13
>gnl|CDD|223824 COG0753, KatE, Catalase [Inorganic ion transport and metabolism].
Length = 496
Score = 232 bits (593), Expect = 3e-70
Identities = 88/173 (50%), Positives = 107/173 (61%), Gaps = 5/173 (2%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
+WP ++PLIEVG +VL++NP N+FAEVEQ AF+P +LVPGI+ SPD +LQGRLFSY DT
Sbjct: 291 LWPEEDYPLIEVGTMVLNRNPDNFFAEVEQAAFAPGNLVPGIDFSPDPLLQGRLFSYGDT 350
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFS-GPQESERGRLS 447
R+RLGPNY Q+PVN P V N QRDG M G NY PNSF P+ E+
Sbjct: 351 QRYRLGPNYHQIPVNRPKC-PVHNNQRDGQMRMGINTGPANYEPNSFGDNPEAPEQPGFV 409
Query: 448 TFA--VSGDVARYNS-SDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNAND 497
V GD R + SD+D FSQ + LS E+ LVDNI L D
Sbjct: 410 EPPERVEGDKQRRRAISDDDYFSQPRALYRSLSDAEKQHLVDNIAFELSKVTD 462
Score = 113 bits (285), Expect = 5e-27
Identities = 45/77 (58%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 103 FWDFISLR---PESTHQDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F DFI + P + +D D FWDF SL PES HQ L SDRGIP YRHM G+G HTF
Sbjct: 150 FPDFIHAQKPDPRTNLRDADTFWDFWSLNPESLHQVTWLMSDRGIPASYRHMEGFGVHTF 209
Query: 160 KLVNAEGKAVYCKFHYK 176
K VNA+GK V+ KFH+K
Sbjct: 210 KFVNAKGKRVWVKFHFK 226
Score = 96.6 bits (241), Expect = 2e-21
Identities = 38/55 (69%), Positives = 46/55 (83%)
Query: 234 TLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
TLTT G P+ D N LTAGP+GP LLQDF+ L++++HFDRERIPERVVHAKG+G
Sbjct: 15 TLTTNQGAPVADNQNSLTAGPRGPTLLQDFHLLEKLAHFDRERIPERVVHAKGSG 69
Score = 49.6 bits (119), Expect = 2e-06
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
D + +Q K +P T+L+D D FWDF SL PES HQ
Sbjct: 152 DFIHAQ-KPDPRTNLRDADTFWDFWSLNPESLHQ 184
Score = 41.6 bits (98), Expect = 7e-04
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 12 PVTHLKDWDMFWDFISLR---PESTHQDWDMFWDFISLRPESTHQ 53
PV ++D F DFI + P + +D D FWDF SL PES HQ
Sbjct: 140 PVFFIRDAIKFPDFIHAQKPDPRTNLRDADTFWDFWSLNPESLHQ 184
Score = 38.9 bits (91), Expect = 0.006
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 40 FWDFISLR---PESTHQDWDMFWDFISLRPESTHQ 71
F DFI + P + +D D FWDF SL PES HQ
Sbjct: 150 FPDFIHAQKPDPRTNLRDADTFWDFWSLNPESLHQ 184
>gnl|CDD|163710 cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 1 catalases are found in
bacteria, algae, and plants; they have a relatively
small subunit size of 55 to 69 kDa, and bind a protoheme
IX (heme b) group buried deep inside the structure. They
appear to form tetramers. In eukaryotic cells, catalases
are located in peroxisomes.
Length = 469
Score = 218 bits (558), Expect = 2e-65
Identities = 83/175 (47%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
+WP +FPL VG++ L+KNP N+FAEVEQ+AFSP +LVPGIEPS DKMLQGRLFSY DT
Sbjct: 277 IWPEDQFPLKPVGKMTLNKNPDNFFAEVEQVAFSPGNLVPGIEPSDDKMLQGRLFSYSDT 336
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQESERGRLST 448
R+RLGPNYLQLP+N P A V N QRDG M + + NY P+ G E+ + S
Sbjct: 337 QRYRLGPNYLQLPINAPKAA-VHNNQRDGQMNYGHDTSDVNYEPSRLDGLPEAPKYPYSQ 395
Query: 449 FAVSGDVARYNSSDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNANDLIQYLY 503
+SG + + +NF Q + S++E++ L+ N+V L + N+ I+
Sbjct: 396 PPLSGTTQQAPIAKTNNFKQAGERYRSFSEEEQENLIKNLVVDLSDVNEEIKLRM 450
Score = 100 bits (251), Expect = 1e-22
Identities = 36/66 (54%), Positives = 44/66 (66%)
Query: 111 PESTHQDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFKLVNAEGKAVY 170
P + QD + +DF S PESTH L+SD G P YRHM+G G HT+K VNAEGK VY
Sbjct: 147 PVTNIQDPNRIFDFFSHVPESTHMLTFLYSDWGTPASYRHMDGSGVHTYKWVNAEGKVVY 206
Query: 171 CKFHYK 176
K+H+K
Sbjct: 207 VKYHWK 212
Score = 95.1 bits (237), Expect = 6e-21
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 234 TLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
TLTT G P+ D N T GP+GPVLL+D++ +++++HFDRERIPERVVHA+GAG
Sbjct: 1 TLTTNQGAPVGDNQNSQTVGPRGPVLLEDYHLIEKLAHFDRERIPERVVHARGAG 55
Score = 40.4 bits (95), Expect = 0.002
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTH 34
D++ + K +PVT+++D + +DF S PESTH
Sbjct: 138 DMIHAL-KPSPVTNIQDPNRIFDFFSHVPESTH 169
Score = 33.4 bits (77), Expect = 0.28
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 48 PESTHQDWDMFWDFISLRPESTHQKRNPVTHLKD 81
P + QD + +DF S PESTH +T L
Sbjct: 147 PVTNIQDPNRIFDFFSHVPESTHM----LTFLYS 176
Score = 32.7 bits (75), Expect = 0.49
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 30 PESTHQDWDMFWDFISLRPESTH 52
P + QD + +DF S PESTH
Sbjct: 147 PVTNIQDPNRIFDFFSHVPESTH 169
>gnl|CDD|215003 smart01060, Catalase, Catalases are antioxidant enzymes that
catalyse the conversion of hydrogen peroxide to water
and molecular oxygen, serving to protect cells from its
toxic effects. Hydrogen peroxide is produced as a
consequence of oxidative cellular metabolism and can be
converted to the highly reactive hydroxyl radical via
transition metals, this radical being able to damage a
wide variety of molecules within a cell, leading to
oxidative stress and cell death. Catalases act to
neutralise hydrogen peroxide toxicity, and are produced
by all aerobic organisms ranging from bacteria to man.
Most catalases are mono-functional, haem-containing
enzymes, although there are also bifunctional
haem-containing peroxidase/catalases that are closely
related to plant peroxidases, and non-haem,
manganese-containing catalases that are found in
bacteria.
Length = 373
Score = 214 bits (547), Expect = 6e-65
Identities = 76/103 (73%), Positives = 86/103 (83%), Gaps = 2/103 (1%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
VWPH+++PLIEVG++ L++NP NYFAEVEQ AFSPS+LVPGIE SPDKMLQGRLFSYPDT
Sbjct: 272 VWPHKDYPLIEVGKMTLNRNPDNYFAEVEQAAFSPSNLVPGIEFSPDKMLQGRLFSYPDT 331
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFN-NQGGAPNY 430
R+RLGPNY QLPVN P V NYQRDG M + NQGG PNY
Sbjct: 332 QRYRLGPNYHQLPVNRPRC-PVHNYQRDGAMRVDGNQGGDPNY 373
Score = 135 bits (343), Expect = 2e-35
Identities = 48/77 (62%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 103 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F DFI + + + T+ D DMFWDF SL PES HQ L SDRGIP YRHMNG+G HTF
Sbjct: 131 FPDFIHAQKRDPRTNLPDHDMFWDFWSLNPESLHQVTWLMSDRGIPASYRHMNGFGVHTF 190
Query: 160 KLVNAEGKAVYCKFHYK 176
KLVNAEG+ Y KFH+K
Sbjct: 191 KLVNAEGERFYVKFHFK 207
Score = 98.3 bits (246), Expect = 2e-22
Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 240 GNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
G P+ D N LTAGP+GPVLLQDF+ +++++HFDRERIPERVVHAKG+G
Sbjct: 2 GAPVADNQNSLTAGPRGPVLLQDFHLIEKLAHFDRERIPERVVHAKGSG 50
Score = 58.6 bits (143), Expect = 3e-09
Identities = 21/34 (61%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
D + +Q KR+P T+L D DMFWDF SL PES HQ
Sbjct: 133 DFIHAQ-KRDPRTNLPDHDMFWDFWSLNPESLHQ 165
Score = 44.8 bits (107), Expect = 6e-05
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQKRNPVTHL 79
F DFI + + + T+ D DMFWDF SL PES HQ VT L
Sbjct: 131 FPDFIHAQKRDPRTNLPDHDMFWDFWSLNPESLHQ----VTWL 169
>gnl|CDD|163713 cd08157, catalase_fungal, Fungal catalases similar to yeast
catalases A and T. Catalase is a ubiquitous enzyme
found in both prokaryotes and eukaryotes, which is
involved in the protection of cells from the toxic
effects of peroxides. It catalyzes the conversion of
hydrogen peroxide to water and molecular oxygen.
Catalases also utilize hydrogen peroxide to oxidize
various substrates such as alcohol or phenols. This
family of fungal catalases has a relatively small
subunit size, and binds a protoheme IX (heme b) group
buried deep inside the structure. Fungal catalases also
bind NADPH as a second redox-active cofactor. They form
tetramers; in eukaryotic cells, catalases are typically
located in peroxisomes. Saccharomyces cerevisiae
catalase T is found in the cytoplasm, though.
Length = 451
Score = 212 bits (543), Expect = 2e-63
Identities = 88/180 (48%), Positives = 115/180 (63%), Gaps = 10/180 (5%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
VWPH++FPL VG+L L++NP NYFAE+EQ AFSPSH+VPGIEPS D +LQ RLFSYPD
Sbjct: 251 VWPHKDFPLRPVGKLTLNENPKNYFAEIEQAAFSPSHMVPGIEPSADPVLQARLFSYPDA 310
Query: 389 HRHRLGPNYLQLPVNCPFATKVAN-YQRDGPMAFN-NQGGAPNY----FPNSFSGPQESE 442
HRHRLGPNY QLPVN P + V N YQRDGPM+ N N GG PNY P ++ +
Sbjct: 311 HRHRLGPNYQQLPVNRPKTSPVYNPYQRDGPMSVNGNYGGDPNYVSSILPPTYFKKRVDA 370
Query: 443 RGRLSTFAVSGDVARYNSS-DEDNFSQCTMFWNILSQDE-RDRLVDNIVGALKNANDLIQ 500
G + G+V + + +++F Q W ++ + ++R V N+ G L A I+
Sbjct: 371 DGHHENW--VGEVVAFLTEITDEDFVQPRALWEVVGKPGQQERFVKNVAGHLSGAPPEIR 428
Score = 103 bits (260), Expect = 6e-24
Identities = 43/106 (40%), Positives = 50/106 (47%), Gaps = 36/106 (33%)
Query: 71 QKRNPVTHLKDWDMFWDFISLRPESTHQDWDMFWDFISLRPESTHQDWDMFWDFISLRPE 130
QKR+P T+LKD MFWD++S PES HQ
Sbjct: 117 QKRDPQTNLKDSTMFWDYLSQNPESIHQ-------------------------------- 144
Query: 131 STHQTMILFSDRGIPDGYRHMNGYGSHTFKLVNAEGKAVYCKFHYK 176
MILFSDRG P YR MNGY HT+K VN +G Y +FH K
Sbjct: 145 ----VMILFSDRGTPASYRSMNGYSGHTYKWVNPDGSFKYVQFHLK 186
Score = 62.7 bits (153), Expect = 1e-10
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 260 LQDFNYLDEISHFDRERIPERVVHAKGAG 288
LQDF+ +D ++HFDRERIPERVVHAKGAG
Sbjct: 1 LQDFHLIDTLAHFDRERIPERVVHAKGAG 29
Score = 50.4 bits (121), Expect = 1e-06
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQDWDMFWDF 43
+ SQ KR+P T+LKD MFWD++S PES HQ +F D
Sbjct: 112 HFIHSQ-KRDPQTNLKDSTMFWDYLSQNPESIHQVMILFSDR 152
Score = 31.9 bits (73), Expect = 0.71
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 48 PESTHQDWDMFWDFISLRPESTHQ 71
P++ +D MFWD++S PES HQ
Sbjct: 121 PQTNLKDSTMFWDYLSQNPESIHQ 144
>gnl|CDD|215783 pfam00199, Catalase, Catalase.
Length = 383
Score = 200 bits (511), Expect = 2e-59
Identities = 75/112 (66%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 328 QVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 387
+VWPH +PLIEVG L L++NP NYFAEVEQ AF PS+LVPGIEPS D MLQ RLF+Y D
Sbjct: 274 KVWPHDRYPLIEVGTLTLNRNPDNYFAEVEQAAFDPSNLVPGIEPSDDPMLQARLFAYAD 333
Query: 388 THRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQ 439
+ R RLGPNY QLPVN P + QRDG M F N GG PNY PNSF GPQ
Sbjct: 334 SQRRRLGPNYQQLPVNRPRCP--VHNQRDGAMRFGNYGGEPNYEPNSFGGPQ 383
Score = 118 bits (298), Expect = 2e-29
Identities = 46/77 (59%), Positives = 56/77 (72%), Gaps = 3/77 (3%)
Query: 103 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F DFI + +P+ +T+ D MFWDF++L PES HQ LFSDRG P +RHMNGYG HTF
Sbjct: 134 FPDFIHAQKPDPATNLPDPTMFWDFLALHPESLHQVTWLFSDRGTPASFRHMNGYGVHTF 193
Query: 160 KLVNAEGKAVYCKFHYK 176
K VNA+GK Y KFH+K
Sbjct: 194 KFVNADGKRTYVKFHFK 210
Score = 92.0 bits (229), Expect = 3e-20
Identities = 37/53 (69%), Positives = 46/53 (86%)
Query: 236 TTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
TTA G P+ D N LTAGP+GP+LLQDF+ +++++HFDRERIPERVVHAKGAG
Sbjct: 1 TTANGAPVADNQNSLTAGPRGPLLLQDFHLIEKLAHFDRERIPERVVHAKGAG 53
Score = 53.1 bits (128), Expect = 2e-07
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
D + +Q K +P T+L D MFWDF++L PES HQ
Sbjct: 136 DFIHAQ-KPDPATNLPDPTMFWDFLALHPESLHQ 168
Score = 40.3 bits (95), Expect = 0.002
Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQ 71
F DFI + +P+ +T+ D MFWDF++L PES HQ
Sbjct: 134 FPDFIHAQKPDPATNLPDPTMFWDFLALHPESLHQ 168
>gnl|CDD|163705 cd00328, catalase, Catalase heme-binding enzyme. Catalase is a
ubiquitous enzyme found in both prokaryotes and
eukaryotes, which is involved in the protection of cells
from the toxic effects of peroxides. It catalyzes the
conversion of hydrogen peroxide to water and molecular
oxygen. Catalases also utilize hydrogen peroxide to
oxidize various substrates such as alcohol or phenols.
Most catalases exist as tetramers of 65KD subunits
containing a protoheme IX group buried deep inside the
structure. In eukaryotic cells, catalases are located in
peroxisomes.
Length = 433
Score = 198 bits (506), Expect = 2e-58
Identities = 83/174 (47%), Positives = 110/174 (63%), Gaps = 8/174 (4%)
Query: 328 QVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 387
+VWP PLI VG+LVL++NP N+FAEVEQ AF P H+VPG+E S D +LQGRLFSY D
Sbjct: 234 KVWPEELVPLIVVGKLVLNRNPLNFFAEVEQAAFDPGHIVPGVEFSEDPLLQGRLFSYAD 293
Query: 388 THRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFS------GPQES 441
T +RLGPN+ QLPVN P+A V N QRDG N+ G PNY PN+ G +
Sbjct: 294 TQLYRLGPNFQQLPVNRPYA-PVHNNQRDGAGNMNDNTGVPNYEPNAKDVRYPAQGAPKF 352
Query: 442 ERGRLSTFAVSGDVARYNSSDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNA 495
+RG S SG +++++DNF+Q +F+ L+ ++ RLVD L +A
Sbjct: 353 DRGHFSH-WKSGVNREASTTNDDNFTQARLFYRSLTPGQQKRLVDAFRFELADA 405
Score = 114 bits (286), Expect = 2e-27
Identities = 45/58 (77%), Positives = 47/58 (81%)
Query: 119 DMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFKLVNAEGKAVYCKFHYK 176
D FWDF+SLRPES HQ LFSDRGIP YRHMNGYGSHTFKLVNA GK Y KFH+K
Sbjct: 113 DRFWDFLSLRPESLHQVSFLFSDRGIPAAYRHMNGYGSHTFKLVNANGKVHYVKFHWK 170
Score = 47.8 bits (114), Expect = 9e-06
Identities = 19/28 (67%), Positives = 20/28 (71%)
Query: 8 VKRNPVTHLKDWDMFWDFISLRPESTHQ 35
K NP T L D D FWDF+SLRPES HQ
Sbjct: 101 QKPNPQTALPDADRFWDFLSLRPESLHQ 128
Score = 34.0 bits (78), Expect = 0.16
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 56 DMFWDFISLRPESTHQ 71
D FWDF+SLRPES HQ
Sbjct: 113 DRFWDFLSLRPESLHQ 128
Score = 31.7 bits (72), Expect = 0.86
Identities = 12/13 (92%), Positives = 13/13 (100%)
Query: 276 RIPERVVHAKGAG 288
RIPERVVHA+GAG
Sbjct: 1 RIPERVVHARGAG 13
>gnl|CDD|215328 PLN02609, PLN02609, catalase.
Length = 492
Score = 190 bits (485), Expect = 1e-54
Identities = 71/173 (41%), Positives = 98/173 (56%), Gaps = 1/173 (0%)
Query: 328 QVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 387
+ WP PL VG+LVL++N N+FAE EQ+AF P+ +VPGI S DK+LQ R+F+Y D
Sbjct: 291 KTWPEDILPLQPVGRLVLNRNIDNFFAENEQLAFCPAIVVPGIYYSDDKLLQTRIFAYAD 350
Query: 388 THRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQESERGRLS 447
T RHRLGPNYLQLPVN P N +G M F ++ NYFP+ F + +ER +
Sbjct: 351 TQRHRLGPNYLQLPVNAPKC-AHHNNHHEGFMNFMHRDEEVNYFPSRFDPVRHAERVPIP 409
Query: 448 TFAVSGDVARYNSSDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNANDLIQ 500
+SG + E+NF Q + S D ++R + V AL + +
Sbjct: 410 HPPLSGRREKCKIEKENNFKQPGERYRSWSPDRQERFIKRWVDALSDPRVTHE 462
Score = 105 bits (265), Expect = 2e-24
Identities = 35/66 (53%), Positives = 43/66 (65%)
Query: 111 PESTHQDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFKLVNAEGKAVY 170
P++ Q+ DF+S PES H LF DRGIP YRHM G+G HT+KL+N GKA Y
Sbjct: 162 PKTHIQEPWRILDFLSHHPESLHMFTFLFDDRGIPQDYRHMEGFGVHTYKLINKAGKAHY 221
Query: 171 CKFHYK 176
KFH+K
Sbjct: 222 VKFHWK 227
Score = 79.0 bits (195), Expect = 1e-15
Identities = 29/58 (50%), Positives = 45/58 (77%)
Query: 231 NPDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
N TT +G P+ + N+ LT G +GP+LL+D++ ++++++FDRERIPERVVHA+GA
Sbjct: 13 NSPFFTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGAS 70
Score = 46.3 bits (110), Expect = 3e-05
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
D+V + K NP TH+++ DF+S PES H
Sbjct: 153 DMVHAL-KPNPKTHIQEPWRILDFLSHHPESLHM 185
Score = 36.3 bits (84), Expect = 0.039
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 12 PVTHLKDWDMFWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQ 53
PV ++D F D + +L+P TH Q+ DF+S PES H
Sbjct: 141 PVFFIRDGMKFPDMVHALKPNPKTHIQEPWRILDFLSHHPESLHM 185
Score = 33.9 bits (78), Expect = 0.17
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 48 PESTHQDWDMFWDFISLRPESTHQ 71
P++ Q+ DF+S PES H
Sbjct: 162 PKTHIQEPWRILDFLSHHPESLHM 185
>gnl|CDD|163711 cd08155, catalase_clade_2, Clade 2 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 2 catalases are mostly found
in bacteria and fungi; they have a large subunit size of
75 to 84 kDa, and bind a heme d group buried deep inside
the structure. They appear to form tetramers. In
eukaryotic cells, catalases are located in peroxisomes.
Length = 443
Score = 157 bits (400), Expect = 5e-43
Identities = 70/167 (41%), Positives = 96/167 (57%), Gaps = 9/167 (5%)
Query: 328 QVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 387
++ P P+ VG++VL++NP N+FAE EQ+AF P+++VPGI+ S D +LQGRLFSY D
Sbjct: 241 KLIPEELVPVQRVGKMVLNRNPDNFFAETEQVAFCPANVVPGIDFSNDPLLQGRLFSYLD 300
Query: 388 THRHRLG-PNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG----PQESE 442
T RLG PN+ +LP+N P V N QRDG M G NYFPNS
Sbjct: 301 TQLSRLGGPNFHELPINRPVC-PVHNNQRDGHMRMTINKGRVNYFPNSLGAGPPRAASPA 359
Query: 443 RGRLSTFA--VSGDVARYNS-SDEDNFSQCTMFWNILSQDERDRLVD 486
G + V G R S S D++SQ +FWN +S E++ ++
Sbjct: 360 EGGFVHYPEKVEGPKIRIRSESFADHYSQARLFWNSMSPVEKEHIIS 406
Score = 97.8 bits (244), Expect = 6e-22
Identities = 44/89 (49%), Positives = 55/89 (61%), Gaps = 13/89 (14%)
Query: 98 QDWDMFWDFI-SLRPE---------STHQDWDMFWDFISLRPESTHQTMILFSDRGIPDG 147
QD F D I +++PE S H D FWDF+SL+PES H M SDR IP
Sbjct: 92 QDAIKFPDLIHAVKPEPHNEMPQAQSAH---DTFWDFVSLQPESAHMVMWAMSDRAIPRS 148
Query: 148 YRHMNGYGSHTFKLVNAEGKAVYCKFHYK 176
YR M G+G HTF+LVNA+GK+ + KFH+K
Sbjct: 149 YRMMEGFGVHTFRLVNAQGKSTFVKFHWK 177
Score = 38.1 bits (89), Expect = 0.008
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 273 DRERIPERVVHAKGAG 288
D ERIPERVVHA+G+G
Sbjct: 1 DHERIPERVVHARGSG 16
Score = 38.1 bits (89), Expect = 0.008
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 16/61 (26%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFI-SLRPE---------STHQDWDMFWDFISLRPEST 51
DLV + + PV ++D F D I +++PE S H D FWDF+SL+PES
Sbjct: 80 DLVGNNI---PVFFIQDAIKFPDLIHAVKPEPHNEMPQAQSAH---DTFWDFVSLQPESA 133
Query: 52 H 52
H
Sbjct: 134 H 134
>gnl|CDD|236886 PRK11249, katE, hydroperoxidase II; Provisional.
Length = 752
Score = 139 bits (352), Expect = 4e-35
Identities = 69/164 (42%), Positives = 99/164 (60%), Gaps = 17/164 (10%)
Query: 336 PLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDTHRHRL-G 394
P+ VG++VL++NP N+FAE EQ+AF P H+VPGI+ + D +LQGRLFSY DT RL G
Sbjct: 363 PVQRVGKMVLNRNPDNFFAETEQVAFHPGHIVPGIDFTNDPLLQGRLFSYTDTQISRLGG 422
Query: 395 PNYLQLPVN---CPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG--PQES----ERGR 445
PN+ ++P+N CP+ N+QRDG G NY PNS +G P+E+ +RG
Sbjct: 423 PNFHEIPINRPTCPY----HNFQRDGMHRMTIDTGPANYEPNSINGNWPRETPPAPKRGG 478
Query: 446 LSTF--AVSGDVARYNS-SDEDNFSQCTMFWNILSQDERDRLVD 486
++ V G+ R S S D +SQ +FW + E+ ++D
Sbjct: 479 FESYQERVEGNKVRERSPSFGDYYSQPRLFWLSQTPIEQRHIID 522
Score = 100 bits (251), Expect = 3e-22
Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 13/89 (14%)
Query: 98 QDWDMFWDFI-SLRPE---------STHQDWDMFWDFISLRPESTHQTMILFSDRGIPDG 147
QD F DF+ +++PE S H D FWD++SL+PE+ H M SDRGIP
Sbjct: 206 QDAIKFPDFVHAVKPEPHNEIPQGQSAH---DTFWDYVSLQPETLHNVMWAMSDRGIPRS 262
Query: 148 YRHMNGYGSHTFKLVNAEGKAVYCKFHYK 176
YR M G+G HTF+L+NAEGKA + +FH+K
Sbjct: 263 YRTMEGFGIHTFRLINAEGKATFVRFHWK 291
Score = 77.8 bits (192), Expect = 5e-15
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 235 LTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
LTT G I D N L AG +GP LL+DF ++I+HFD ERIPER+VHA+G+
Sbjct: 77 LTTNQGVRIADDQNSLRAGSRGPSLLEDFILREKITHFDHERIPERIVHARGSA 130
Score = 39.3 bits (92), Expect = 0.005
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 16/61 (26%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFI-SLRPE---------STHQDWDMFWDFISLRPEST 51
DLV + PV ++D F DF+ +++PE S H D FWD++SL+PE+
Sbjct: 194 DLVGNNT---PVFFIQDAIKFPDFVHAVKPEPHNEIPQGQSAH---DTFWDYVSLQPETL 247
Query: 52 H 52
H
Sbjct: 248 H 248
Score = 38.1 bits (89), Expect = 0.010
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 13/46 (28%)
Query: 35 QDWDMFWDFI-SLRPE---------STHQDWDMFWDFISLRPESTH 70
QD F DF+ +++PE S H D FWD++SL+PE+ H
Sbjct: 206 QDAIKFPDFVHAVKPEPHNEIPQGQSAH---DTFWDYVSLQPETLH 248
>gnl|CDD|219112 pfam06628, Catalase-rel, Catalase-related immune-responsive. This
family represents a small conserved region within
catalase enzymes (EC:1.11.1.6). All members also contain
the Catalase family, pfam00199 domain. Catalase
decomposes hydrogen peroxide into water and oxygen,
serving to protect cells from its toxic effects. This
domain carries the immune-responsive amphipathic
octa-peptide that is recognised by T cells.
Length = 68
Score = 62.0 bits (152), Expect = 2e-12
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 457 RYNSSDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNAND------LIQYLYN 504
R S D+FSQ +F+ +S E+ RL+DNI L D ++ + Y
Sbjct: 1 RARSEKFDHFSQAGLFYRSMSPAEQQRLIDNIAFELSKVTDPEIRERVVSHFYK 54
>gnl|CDD|163706 cd08150, catalase_like, Catalase-like heme-binding proteins and
protein domains. Catalase is a ubiquitous enzyme found
in both prokaryotes and eukaryotes involved in the
protection of cells from the toxic effects of peroxides.
It catalyses the conversion of hydrogen peroxide to
water and molecular oxygen. Several other related
protein families share the catalase fold and bind to
heme, but do not necessarily have catalase activity.
Length = 283
Score = 63.7 bits (155), Expect = 3e-11
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 103 FWDFISLRPEST--HQDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFK 160
+ DF++ S D ++ RPE + + +PD Y + TF
Sbjct: 90 YEDFVAEFARSARGEPPLDFIAWYVEKRPEDLPNLL--GARSQVPDSYAAARYFSQVTFA 147
Query: 161 LVNAEGKAVYCKFHYK 176
+N GK +
Sbjct: 148 FINGAGKYRVVRSKDN 163
Score = 47.9 bits (114), Expect = 6e-06
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 330 WPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDK--MLQGRLFSYPD 387
WP E P+ V ++ + A E AF+P G+ + D +L+ R Y
Sbjct: 221 WP-TEHPVEAVAKITIPPPTFT--AAQEAFAFNPFTPWHGLLETNDLGPILEVRRRVYTS 277
Query: 388 THRHRL 393
+ R
Sbjct: 278 SQGLRH 283
>gnl|CDD|163709 cd08153, srpA_like, Catalase-like heme-binding proteins similar to
the uncharacterized srpA. Catalase is a ubiquitous
enzyme found in both prokaryotes and eukaryotes involved
in the protection of cells from the toxic effects of
peroxides. It catalyses the conversion of hydrogen
peroxide to water and molecular oxygen. Several other
related protein families share the catalase fold and
bind to heme, but do not necessarily have catalase
activity. This family contains uncharacterized proteins
similar to the Synechococcus elongatus PCC 7942
periplasmic protein srpA, of mostly bacterial origin.
The plasmid-encoded srpA is regulated by sulfate, but
does not seem to function in its uptake or metabolism.
Length = 295
Score = 48.4 bits (116), Expect = 4e-06
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 328 QVWP--HREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSY 385
+ WP +E ++ G L + K + I F P L GIEPS D +L R +Y
Sbjct: 231 KPWPADRKE---VDAGTLTITKVAPDQGGACRDINFDPLVLPDGIEPSDDPLLAARSAAY 287
Query: 386 PDTHRHRL 393
+ R
Sbjct: 288 AVSFSRRQ 295
Score = 28.7 bits (65), Expect = 7.3
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 142 RGIPDGYRHMNGYGSHTFKLVNAEGKAVYCKFH 174
P + + YG + F NA GK ++
Sbjct: 143 APPPASFANTTYYGVNAFYFTNANGKRQPVRWR 175
>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase. This model describes LpxD, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species. This
protein represents the third step from
UDP-N-acetyl-D-glucosamine. The group added at this step
generally is 14:0(3-OH) (myristate) but may vary; in
Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 324
Score = 33.8 bits (78), Expect = 0.18
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 305 FLLSLHYRKGAAPFTNYSSIFCHQVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPS 364
FL + Y K + ++ + L ++ K+P FA+V ++ P
Sbjct: 34 FLANPKYLK-HLKSSQAGAVIVSPD----DQGLPAKCAALVVKDPYLAFAKVAELFDPPP 88
Query: 365 HLVPGIEPSP 374
GI P+
Sbjct: 89 KREAGIHPTA 98
>gnl|CDD|181572 PRK08871, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 626
Score = 31.4 bits (71), Expect = 1.5
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 366 LVPGIEPSPDKMLQGRLFSYPDTHRHRL 393
LV G E S KM+ G YPD H+ RL
Sbjct: 233 LVSGTEASQLKMIDG----YPDPHQRRL 256
>gnl|CDD|225426 COG2871, NqrF, Na+-transporting NADH:ubiquinone oxidoreductase,
subunit NqrF [Energy production and conversion].
Length = 410
Score = 30.9 bits (70), Expect = 1.6
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 13 VTHLKDWDMFWDFISLRPESTHQDWDMF--WDFISLRPESTHQDWDM 57
+ KD+D+ P H+DWD F + ++S E + + M
Sbjct: 178 TVNYKDFDI--------PPEYHEDWDKFNLFRYVSKVDEPIIRAYSM 216
Score = 30.9 bits (70), Expect = 1.6
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 76 VTHLKDWDMFWDFISLRPESTHQDWDMF--WDFISLRPESTHQDWDM 120
+ KD+D+ P H+DWD F + ++S E + + M
Sbjct: 178 TVNYKDFDI--------PPEYHEDWDKFNLFRYVSKVDEPIIRAYSM 216
>gnl|CDD|129778 TIGR00695, uxuA, mannonate dehydratase. This Fe2+-requiring enzyme
plays a role in D-glucuronate catabolism in Escherichia
coli. Mannonate dehydratase converts D-mannonate to
2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is
found in a glucuronate utilization operon in Bacillus
stearothermophilus T-6 [Energy metabolism, Sugars].
Length = 394
Score = 30.3 bits (68), Expect = 2.7
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 61 FISLRPESTHQKRNPVT-----HL-KDWDMFWDFISLRPESTHQDWDMFWDFISLRPEST 114
F LR ST ++ NP+T HL D DM ++ E +D++ I +RP+
Sbjct: 296 FSHLR--STKREENPLTFHEAAHLTGDVDMNNVVKAVMEEEHRRDYEGETRLIPMRPDHG 353
Query: 115 HQDWD 119
HQ D
Sbjct: 354 HQLLD 358
Score = 28.8 bits (64), Expect = 6.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 3 LVASQVKRNPVT-----HL-KDWDMFWDFISLRPESTHQDWDMFWDFISLRPESTHQDWD 56
L +++ + NP+T HL D DM ++ E +D++ I +RP+ HQ D
Sbjct: 299 LRSTKREENPLTFHEAAHLTGDVDMNNVVKAVMEEEHRRDYEGETRLIPMRPDHGHQLLD 358
>gnl|CDD|239113 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases
similar to the Inosine-adenosine-guanosine-preferring
nucleoside hydrolase from Trypanosoma vivax.
Nucleoside hydrolases cleave the N-glycosidic bond in
nucleosides generating ribose and the respective base.
Nucleoside hydrolases vary in their substrate
specificity. This group contains eukaryotic and
bacterial proteins similar to the purine specific
inosine-adenosine-guanosine-preferring nucleoside
hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is
of the order of a thousand to ten thousand fold more
specific towards the naturally occurring purine
nucleosides, than towards the pyrimidine nucleosides. .
Length = 312
Score = 29.7 bits (67), Expect = 3.6
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 30 PESTHQDWDMFWDFISLRPESTHQDWD--MFWDFISLRPESTHQKRNPVTHLKDWDMFWD 87
P + ++++FWD P + +D + + L ++T+ P+T
Sbjct: 168 PSNGTAEFNIFWD-----PLAAKTVFDSGLKITLVPL--DATNT--VPLTREFLETDRQR 218
Query: 88 FISLRPESTHQDWDMFWDFISLRPESTHQDWDMF 121
F + R ++ + L ST+ WD+
Sbjct: 219 FAAQRLPASDLAGQGYALVKPLEFNSTYYMWDVL 252
>gnl|CDD|238353 cd00653, RNA_pol_B_RPB2, RNA polymerase beta subunit. RNA
polymerases catalyse the DNA dependent polymerization of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). Each RNA
polymerase complex contains two related members of this
family, in each case they are the two largest
subunits.The clamp is a mobile structure that grips DNA
during elongation.
Length = 866
Score = 29.1 bits (66), Expect = 7.1
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 231 NPDTLTT------ATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDR 274
N +T+ ATGN + + +G +L N L E+SH R
Sbjct: 284 NSKPITSGIKEFLATGNWGSKRFLMQRSGL--SQVLDRLNPLSELSHKRR 331
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.440
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,169,460
Number of extensions: 2532657
Number of successful extensions: 1881
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1849
Number of HSP's successfully gapped: 78
Length of query: 504
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 403
Effective length of database: 6,457,848
Effective search space: 2602512744
Effective search space used: 2602512744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.0 bits)