RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2590
(504 letters)
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 303 bits (779), Expect = 5e-98
Identities = 106/174 (60%), Positives = 137/174 (78%), Gaps = 2/174 (1%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
VWPH+++PLI VG+LVL++NP NYFAEVEQIAF PS++ PGIE SPDKMLQGRLF+YPDT
Sbjct: 298 VWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDT 357
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFN-NQGGAPNYFPNSFSGPQESERGRLS 447
HRHRLGPNYL +PVNCP+ +VANYQRDGPM NQGGAPNY+PNSF P++
Sbjct: 358 HRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALEH 417
Query: 448 TFAVSGDVARYNSSDEDNFSQCTMFW-NILSQDERDRLVDNIVGALKNANDLIQ 500
+ SG+V R+N++++DN +Q F+ N+L++++R RL +NI G LK+A IQ
Sbjct: 418 SIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLKDAQIFIQ 471
Score = 143 bits (362), Expect = 2e-37
Identities = 56/77 (72%), Positives = 60/77 (77%), Gaps = 3/77 (3%)
Query: 103 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F FI S + TH +D DM WDF SLRPES HQ LFSDRGIPDG+RHMNGYGSHTF
Sbjct: 157 FPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTF 216
Query: 160 KLVNAEGKAVYCKFHYK 176
KLVNA G+AVYCKFHYK
Sbjct: 217 KLVNANGEAVYCKFHYK 233
Score = 112 bits (282), Expect = 8e-27
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 230 QNPDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
Q D LTT GNP+ DK NV+T GP+GP+L+QD + DE++HFDRERIPERVVHAKGAG
Sbjct: 18 QKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAG 76
Score = 65.3 bits (160), Expect = 1e-11
Identities = 24/34 (70%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
+ SQ KRNP THLKD DM WDF SLRPES HQ
Sbjct: 159 SFIHSQ-KRNPQTHLKDPDMVWDFWSLRPESLHQ 191
Score = 50.7 bits (122), Expect = 8e-07
Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQKRNPVTHL 79
F FI S + TH +D DM WDF SLRPES HQ V+ L
Sbjct: 157 FPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQ----VSFL 195
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 302 bits (775), Expect = 2e-97
Identities = 76/174 (43%), Positives = 102/174 (58%), Gaps = 3/174 (1%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
VWPH+++PLIEVG+ L++NP NYFAEVEQ AF+P+++VPGI SPDKMLQGRLF+Y D
Sbjct: 280 VWPHKDYPLIEVGEFELNRNPQNYFAEVEQAAFNPANVVPGISFSPDKMLQGRLFAYGDA 339
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFN-NQGGAPNYFPNSFSGPQESERGRLS 447
R+RLG N+ +PVN P V +Y RDG M + N G Y PN E
Sbjct: 340 QRYRLGVNHQHIPVNAPRC-PVHSYHRDGAMRVDGNFGSTLGYEPNDQGQWAEQPDFSEP 398
Query: 448 TFAVSGDVARYNS-SDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNANDLIQ 500
+ G A ++ DED FSQ + +++ +++ L DN L IQ
Sbjct: 399 PLNLDGAAAHWDHREDEDYFSQPGDLFGLMTAEKQAILFDNTARNLNGVPKEIQ 452
Score = 144 bits (367), Expect = 3e-38
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 103 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F D +++ + T+ + WDF + PE+ HQ I+ SDRGIP YRHM+G+GSHTF
Sbjct: 139 FPDLNHAVKRDPRTNMRSAKNNWDFWTSLPEALHQVTIVMSDRGIPATYRHMHGFGSHTF 198
Query: 160 KLVNAEGKAVYCKFHYK 176
+N++ + + KFH+
Sbjct: 199 SFINSDNERYWVKFHFV 215
Score = 112 bits (283), Expect = 5e-27
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 233 DTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
LTTA G P+ NV TAG +GP LLQD +L++++HFDRE IPER +HAKG+G
Sbjct: 3 KKLTTAAGCPVAHNQNVQTAGKRGPQLLQDVWFLEKLAHFDREVIPERRMHAKGSG 58
Score = 66.0 bits (162), Expect = 1e-11
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
DL + KR+P T+++ WDF + PE+ HQ
Sbjct: 141 DLNHAV-KRDPRTNMRSAKNNWDFWTSLPEALHQ 173
Score = 49.8 bits (120), Expect = 1e-06
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQKRNPVTHL 79
F D +++ + T+ + WDF + PE+ HQ VT +
Sbjct: 139 FPDLNHAVKRDPRTNMRSAKNNWDFWTSLPEALHQ----VTIV 177
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 297 bits (763), Expect = 1e-95
Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 3/173 (1%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
+WP + P ++GQ+VL+KN N+F E EQ+A +P++LVPGIEPS D++LQGR+FSY DT
Sbjct: 278 IWP--DVPEKKIGQMVLNKNVDNFFQETEQVAMAPANLVPGIEPSEDRLLQGRVFSYADT 335
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQESERGRLST 448
+RLG N L LPVN P V N +DG + + NY P+ ++ R S
Sbjct: 336 QMYRLGANGLSLPVNQPKV-AVNNGNQDGALNTGHTTSGVNYEPSRLEPRPADDKARYSE 394
Query: 449 FAVSGDVARYNSSDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNANDLIQY 501
+SG + + E NF Q + S E+ LV +L + +
Sbjct: 395 LPLSGTTQQAKITREQNFKQAGDLYRSYSAKEKTDLVQKFGESLADTLTESKN 447
Score = 143 bits (362), Expect = 1e-37
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 103 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F D + + +P+ T+ + +DF S PE+T +L+S+ G P GYR M+G G H +
Sbjct: 137 FPDMVHAFKPDPRTNLDNDSRRFDFFSHVPEATRTLTLLYSNEGTPAGYRFMDGNGVHAY 196
Query: 160 KLVNAEGKAVYCKFHYK 176
KLVNA+G+ Y KFH+K
Sbjct: 197 KLVNAKGEVHYVKFHWK 213
Score = 112 bits (282), Expect = 9e-27
Identities = 33/56 (58%), Positives = 38/56 (67%)
Query: 233 DTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
DTLT G + D N TAG +GPVLLQD L ++ FDRERIPERVVHA+G G
Sbjct: 2 DTLTRDNGAVVGDNQNSQTAGAQGPVLLQDVQLLQKLQRFDRERIPERVVHARGTG 57
Score = 64.1 bits (157), Expect = 4e-11
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
D+V + K +P T+L + +DF S PE+T
Sbjct: 139 DMVHAF-KPDPRTNLDNDSRRFDFFSHVPEATRT 171
Score = 49.5 bits (119), Expect = 1e-06
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQKRNPVTHL 79
F D + + +P+ T+ + +DF S PE+T +T L
Sbjct: 137 FPDMVHAFKPDPRTNLDNDSRRFDFFSHVPEATRT----LTLL 175
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 295 bits (757), Expect = 8e-95
Identities = 83/183 (45%), Positives = 116/183 (63%), Gaps = 9/183 (4%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
+E+PLIEVG + L++NP NYFAEVEQ+ FSP + VPGIE SPDK+LQGRLF+Y D
Sbjct: 281 TVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDA 340
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFS-GPQESERGRLS 447
HRHR+G N QLP+N A V NYQ+DG M FNN NY PNS++ P+E ++S
Sbjct: 341 HRHRVGANSHQLPINQAKA-PVNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPTAKIS 399
Query: 448 TFAVSGDVARYNSSDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNANDL------IQY 501
+F V G+V Y+ ++D+F+Q +N+L +E++ L++NI +L + I
Sbjct: 400 SFEVEGNVGNYS-YNQDHFTQANALYNLLPSEEKENLINNIAASLGQVKNQEIIARQIDL 458
Query: 502 LYN 504
Sbjct: 459 FTR 461
Score = 143 bits (362), Expect = 1e-37
Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 103 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F DFI S + TH + + WDF S PES HQ IL SDRGIP +RHM+G+GSHTF
Sbjct: 140 FPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTF 199
Query: 160 KLVNAEGKAVYCKFHYK 176
K VNA G+ + K+H+K
Sbjct: 200 KWVNAAGEVFFVKYHFK 216
Score = 111 bits (281), Expect = 1e-26
Identities = 34/57 (59%), Positives = 45/57 (78%)
Query: 232 PDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
LTT+ G+P+ D N LTAG GPVL+QD + L++++HF+RER+PERVVHAKGAG
Sbjct: 3 NQHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAG 59
Score = 65.3 bits (160), Expect = 2e-11
Identities = 20/34 (58%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
D + SQ KRNP THLK + WDF S PES HQ
Sbjct: 142 DFIHSQ-KRNPRTHLKSPEAVWDFWSHSPESLHQ 174
Score = 49.9 bits (120), Expect = 1e-06
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQKRNPVTHL 79
F DFI S + TH + + WDF S PES HQ VT L
Sbjct: 140 FPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQ----VTIL 178
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 289 bits (743), Expect = 1e-92
Identities = 76/176 (43%), Positives = 105/176 (59%), Gaps = 8/176 (4%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
+W +++PL+EVG + L+KNP NYFAEVEQ AF+P+++VPGI SPD+MLQGRLFSY DT
Sbjct: 283 IWYTQDYPLMEVGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGDT 342
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQESERGRLST 448
HR+RLG NY Q+PVN P + RDG M G NY P+S G +E + R
Sbjct: 343 HRYRLGVNYPQIPVNKPRC-PFHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDPK 401
Query: 449 FAVSGDVA-------RYNSSDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNAND 497
F ++ Y + D D ++Q ++ L DE++RL D I +L +
Sbjct: 402 FNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKERLHDTIGESLAHVTH 457
Score = 143 bits (362), Expect = 2e-37
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 103 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F DFI + + + T+ + DM WDF S PES +Q + SDRGIP +RHM+G+GSHTF
Sbjct: 142 FPDFIHTQKRDPQTNLPNHDMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTF 201
Query: 160 KLVNAEGKAVYCKFHYK 176
L+NA+G+ + KFH+
Sbjct: 202 SLINAKGERFWVKFHFH 218
Score = 113 bits (285), Expect = 4e-27
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 229 VQNPDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
V TTA G P+ D NNV+TAGP+GPVLLQ +L++++ FDRERIPERVVHAKG+G
Sbjct: 2 VNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSG 61
Score = 64.9 bits (159), Expect = 2e-11
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
D + +Q KR+P T+L + DM WDF S PES +Q
Sbjct: 144 DFIHTQ-KRDPQTNLPNHDMVWDFWSNVPESLYQ 176
Score = 49.5 bits (119), Expect = 2e-06
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQKRNPVTHL 79
F DFI + + + T+ + DM WDF S PES +Q VT +
Sbjct: 142 FPDFIHTQKRDPQTNLPNHDMVWDFWSNVPESLYQ----VTWV 180
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 289 bits (741), Expect = 2e-92
Identities = 73/171 (42%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
W P VG + L+KN NYFAE E + F+P LVPG+ PS DK+LQGRLFSY DT
Sbjct: 283 DWFEDVIPFQHVGTMTLNKNVDNYFAETESVGFNPGVLVPGMLPSEDKLLQGRLFSYSDT 342
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG-PQESERGRLS 447
RHR+GPNY QLP+NCPFA +V NYQRDG M F Q + NY PN + P+++
Sbjct: 343 QRHRIGPNYQQLPINCPFA-QVNNYQRDGAMPFKQQTSSVNYEPNRYQDEPKQTPEYTED 401
Query: 448 TFAVSGDVARYNS-SDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNAND 497
T + D+ +NF Q + ++++E+ L++N+V L+
Sbjct: 402 TQPLHDDIHGRLEIEKTNNFGQAGEVYRRMTEEEQMALLNNLVNDLQQVRH 452
Score = 142 bits (361), Expect = 2e-37
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 103 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F D + SL+P+ T+ QD D +WDF++LRPEST+ M +F+D GIP YR M G H+F
Sbjct: 142 FPDMVHSLKPDPRTNIQDPDRYWDFMTLRPESTNMLMHIFTDEGIPASYRKMRGSSVHSF 201
Query: 160 KLVNAEGKAVYCKFHYK 176
K VNA G VY K +
Sbjct: 202 KWVNAHGNTVYIKLRWV 218
Score = 114 bits (287), Expect = 2e-27
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 230 QNPDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
+N LTT G PI D N TAG +GP LL+D+ +++I+HFDRER+PERVVHA+G G
Sbjct: 3 ENEKKLTTNQGVPIGDNQNSRTAGRRGPTLLEDYQLIEKIAHFDRERVPERVVHARGFG 61
Score = 63.3 bits (155), Expect = 7e-11
Identities = 17/34 (50%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
D+V S K +P T+++D D +WDF++LRPEST+
Sbjct: 144 DMVHSL-KPDPRTNIQDPDRYWDFMTLRPESTNM 176
Score = 48.7 bits (117), Expect = 3e-06
Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQ 71
F D + SL+P+ T+ QD D +WDF++LRPEST+
Sbjct: 142 FPDMVHSLKPDPRTNIQDPDRYWDFMTLRPESTNM 176
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 288 bits (739), Expect = 6e-92
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 6/177 (3%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
+++P I+VG L L++NP N+FA++E AFSPS+ VPGI SPD+ML GR F+Y D
Sbjct: 287 TISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDA 346
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSGPQESERGRL-S 447
+R+G + QLPVN P V NY +G M +++ G Y PNS E G +
Sbjct: 347 QLYRVGAHVNQLPVNRPKN-AVHNYAFEGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDD 405
Query: 448 TFAVSGDVARYNS---SDEDNFSQC-TMFWNILSQDERDRLVDNIVGALKNANDLIQ 500
+ G + R +D+D+F Q T+ + S ERD V+ + GALK +Q
Sbjct: 406 GWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQDVQ 462
Score = 142 bits (361), Expect = 3e-37
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 103 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F FI S + + +D M WDF + PES HQ L RG+P +R MNGYGSHT+
Sbjct: 146 FTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTY 205
Query: 160 KLVNAEGKAVYCKFHYK 176
VNA+G+ + K+H+
Sbjct: 206 LWVNAQGEKHWVKYHFI 222
Score = 112 bits (283), Expect = 6e-27
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 227 RFVQNPDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKG 286
+ + T G P LT G +GP++L D + L+ HF+R IPER HAKG
Sbjct: 5 KTTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKG 64
Query: 287 AG 288
+G
Sbjct: 65 SG 66
Score = 64.5 bits (158), Expect = 3e-11
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
+ SQ KR P + L+D M WDF + PES HQ
Sbjct: 148 HFIRSQ-KRLPDSGLRDATMQWDFWTNNPESAHQ 180
Score = 49.5 bits (119), Expect = 2e-06
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQKRNPVTHL 79
F FI S + + +D M WDF + PES HQ VT+L
Sbjct: 146 FTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQ----VTYL 184
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 284 bits (730), Expect = 9e-91
Identities = 74/181 (40%), Positives = 102/181 (56%), Gaps = 9/181 (4%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
VWP +FPL VG++VL++NP N+FA+VEQ AF+PS VP E S D +LQ RLFSY D
Sbjct: 285 VWPQGQFPLRRVGKIVLNENPLNFFAQVEQAAFAPSTTVPYQEASADPVLQARLFSYADA 344
Query: 389 HRHRLGPNYLQLPVNCPFATK-VANYQRDGPMAFN-NQGGAPNYFPNSFSG--PQESERG 444
HR+RLGPN+ Q+PVNCP+A+K RDGPM N N G P Y N S Q+
Sbjct: 345 HRYRLGPNFHQIPVNCPYASKFFNPAIRDGPMNVNGNFGSEPTYLANDKSYTYIQQDRPI 404
Query: 445 RLSTFAVSGDVARYNSS---DEDNFSQCTMFWNILSQD--ERDRLVDNIVGALKNANDLI 499
+ +G Y+ + + +F Q + +L + ++ L NI ++ A I
Sbjct: 405 QQHQEVWNGPAIPYHWATSPGDVDFVQARNLYRVLGKQPGQQKNLAYNIGIHVEGACPQI 464
Query: 500 Q 500
Q
Sbjct: 465 Q 465
Score = 138 bits (349), Expect = 9e-36
Identities = 42/120 (35%), Positives = 50/120 (41%), Gaps = 42/120 (35%)
Query: 58 FWDFISLRPESTH-QKRNPVTHLKDWDMFWDFISLRPESTHQDWDMFWDFISLRPESTHQ 116
F FI H QKRNP T+L+D DMFW DF++
Sbjct: 142 FPHFI-------HTQKRNPQTNLRDADMFW------------------DFLTTPE----- 171
Query: 117 DWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFKLVNAEGKAVYCKFHYK 176
+ HQ MILFSDRG P YR M+GY HT+K N G Y + H K
Sbjct: 172 -----------NQVAIHQVMILFSDRGTPANYRSMHGYSGHTYKWSNKNGDWHYVQVHIK 220
Score = 112 bits (282), Expect = 9e-27
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 229 VQNPDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
V+ +T +TGNPI++ G GP+LLQD+N +D ++HF+RE IP+R HA G+G
Sbjct: 2 VREDRVVTNSTGNPINEPFVTQRIGEHGPLLLQDYNLIDSLAHFNRENIPQRNPHAHGSG 61
Score = 59.9 bits (146), Expect = 8e-10
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISL--RPESTHQ 35
+ +Q KRNP T+L+D DMFWDF++ + HQ
Sbjct: 144 HFIHTQ-KRNPQTNLRDADMFWDFLTTPENQVAIHQ 178
Score = 44.9 bits (107), Expect = 4e-05
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISL--RPESTHQKRNPVTHL 79
F FI + + T+ +D DMFWDF++ + HQ V L
Sbjct: 142 FPHFIHTQKRNPQTNLRDADMFWDFLTTPENQVAIHQ----VMIL 182
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 281 bits (722), Expect = 2e-89
Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 11/182 (6%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
VWPH++FPL G+ L++NP NY+AE EQIAFSPSH VPG+EPS D +LQ RLFSYPDT
Sbjct: 294 VWPHKDFPLRHFGRFTLNENPKNYYAETEQIAFSPSHTVPGMEPSNDPVLQSRLFSYPDT 353
Query: 389 HRHRLGPNYLQLPVNCPFATK-VANYQRDGPMAFN-NQGGAPNYFPNSFSGPQES----- 441
HRHRLGPNY Q+PVNCP + RDGPM + N GG PNY N+++ P +
Sbjct: 354 HRHRLGPNYHQIPVNCPLKSGSFNPINRDGPMCVDGNLGGTPNY-ANAYNCPIQYAVSPK 412
Query: 442 ERGRLSTFAVSGDVARYNS-SDEDNFSQCTMFWNILSQD--ERDRLVDNIVGALKNANDL 498
G +G+V Y+ + ++ Q MFW +L + E++ LV N+ + A++
Sbjct: 413 ASGNKPDEKYTGEVVPYHWEHTDYDYFQPKMFWKVLGRTPGEQESLVKNVANHVSAADEF 472
Query: 499 IQ 500
IQ
Sbjct: 473 IQ 474
Score = 142 bits (360), Expect = 4e-37
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 103 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTF 159
F FI + + +T+ +D +MFWD+++ ES HQ M LFS+RG P YR MNGY HT+
Sbjct: 153 FPHFIHTQKRNPATNLKDPNMFWDYLTANDESLHQVMYLFSNRGTPASYRTMNGYSGHTY 212
Query: 160 KLVNAEGKAVYCKFHYK 176
K N++G+ VY + H+
Sbjct: 213 KWYNSKGEWVYVQVHFI 229
Score = 104 bits (261), Expect = 4e-24
Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 10/69 (14%)
Query: 230 QNPDTLTTATGNPIDDKNNVLT----------AGPKGPVLLQDFNYLDEISHFDRERIPE 279
NP TT+ G P+ D A P GP+LLQDF +D +SHFDRERIPE
Sbjct: 4 ANPPVFTTSQGCPVSDPFTTQRIPLDSTGYKYAPPIGPLLLQDFKLIDTLSHFDRERIPE 63
Query: 280 RVVHAKGAG 288
RVVHAKGAG
Sbjct: 64 RVVHAKGAG 72
Score = 65.4 bits (160), Expect = 2e-11
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
+ +Q KRNP T+LKD +MFWD+++ ES HQ
Sbjct: 155 HFIHTQ-KRNPATNLKDPNMFWDYLTANDESLHQ 187
Score = 49.9 bits (120), Expect = 1e-06
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 40 FWDFI-SLRPE-STH-QDWDMFWDFISLRPESTHQKRNPVTHL 79
F FI + + +T+ +D +MFWD+++ ES HQ V +L
Sbjct: 153 FPHFIHTQKRNPATNLKDPNMFWDYLTANDESLHQ----VMYL 191
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 274 bits (702), Expect = 2e-84
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 12/187 (6%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
+WP P+ +G++ L++NP +F + EQIAF SH+V GI S D +LQGR FSY DT
Sbjct: 302 IWPEDLVPVRYIGEMELNRNPDEFFPQTEQIAFCTSHVVNGIGFSDDPLLQGRNFSYFDT 361
Query: 389 HRHRLGPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG--PQESERGRL 446
RLG N+ +LP+N P V N+ RDG M G NY+PN F P + G
Sbjct: 362 QISRLGVNFQELPINRPVC-PVMNFNRDGAMRHTISRGTVNYYPNRFDACPPASLKEGGY 420
Query: 447 STFA--VSGDVARYNS-SDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNANDL----- 498
+A V+G AR S +++FSQ +F+N +S E+ +++ L + D
Sbjct: 421 LEYAQKVAGIKARARSAKFKEHFSQAQLFYNSMSPIEKQHMINAFGFELDHCEDPVVYGR 480
Query: 499 -IQYLYN 504
+Q L +
Sbjct: 481 MVQRLAD 487
Score = 133 bits (337), Expect = 2e-33
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 40/125 (32%)
Query: 53 QDWDMFWDFISLRPESTH-QKRNPVTHLKDWDMFWDFISLRPESTHQDWDMFWDFISLRP 111
QD F D I H K P +
Sbjct: 152 QDAIKFPDVI-------HAGKPEPHNEVPQ-----------------------------A 175
Query: 112 ESTHQDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFKLVNAEGKAVYC 171
+S H + FWDF E+TH SDR IP R M G+G +T+ L+NA+GK +
Sbjct: 176 QSAH---NNFWDFQFNHTEATHMFTWAMSDRAIPRSLRMMQGFGVNTYTLINAQGKRHFV 232
Query: 172 KFHYK 176
KFH+
Sbjct: 233 KFHWT 237
Score = 101 bits (254), Expect = 6e-23
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 213 NQSEDQESAGEEGGRFVQNPDTLTTATGNPIDDKNN---VLTAGPKGPVLLQDFNYLDEI 269
++ D + + LTT G ++ +++ GP LL+D + I
Sbjct: 1 SKKVDDL---KNEFKETDKSARLTTDYGVKQTTADDWLRIVSDDKIGPSLLEDPFARERI 57
Query: 270 SHFDRERIPERVVHAKGAG 288
FD ERIPERVVHA+G+G
Sbjct: 58 MRFDHERIPERVVHARGSG 76
Score = 53.6 bits (129), Expect = 1e-07
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 2 DLVASQVKRNPVTHLKD----WDMFWDFISLRPESTHQ-DWDM 39
D++ + K P + + FWDF E+TH W M
Sbjct: 159 DVIHAG-KPEPHNEVPQAQSAHNNFWDFQFNHTEATHMFTWAM 200
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 267 bits (684), Expect = 2e-81
Identities = 66/183 (36%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
+ P P+ VG++VL++NP N+FAE EQ AF P H+VPG++ + D +LQGRL+SY DT
Sbjct: 359 LIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLYSYTDT 418
Query: 389 HRHRL-GPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG------PQES 441
RL GPN+ ++P+N P N+QRDG NY PNS + P
Sbjct: 419 QISRLGGPNFHEIPINRPTC-PYHNFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGP 477
Query: 442 ERGRLSTFA--VSGDVARYNS-SDEDNFSQCTMFWNILSQDERDRLVDNIVGAL-KNAND 497
+RG ++ V G+ R S S + +S +FW + E+ +VD L K
Sbjct: 478 KRGGFESYQERVEGNKVRERSPSFGEYYSHPRLFWLSQTPFEQRHIVDGFSFELSKVVRP 537
Query: 498 LIQ 500
I+
Sbjct: 538 YIR 540
Score = 135 bits (341), Expect = 6e-34
Identities = 44/125 (35%), Positives = 57/125 (45%), Gaps = 40/125 (32%)
Query: 53 QDWDMFWDFISLRPESTH-QKRNPVTHLKDWDMFWDFISLRPESTHQDWDMFWDFISLRP 111
QD F DF+ H K P +
Sbjct: 209 QDAHKFPDFV-------HAVKPEPHWAIPQ-----------------------------G 232
Query: 112 ESTHQDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFKLVNAEGKAVYC 171
+S H D FWD++SL+PE+ H M SDRGIP YR M G+G HTF+L+NAEGKA +
Sbjct: 233 QSAH---DTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFV 289
Query: 172 KFHYK 176
+FH+K
Sbjct: 290 RFHWK 294
Score = 112 bits (281), Expect = 2e-26
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 209 TPEKNQSEDQESAGEEGGRFVQNPDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDE 268
+ + + +++ E R LTT G I D N L AG +GP LL+DF ++
Sbjct: 54 SLKAPDTRNEKLNSLEDVRKGSENYALTTNQGVRIADDQNSLRAGSRGPTLLEDFILREK 113
Query: 269 ISHFDRERIPERVVHAKGAG 288
I+HFD ERIPER+VHA+G+
Sbjct: 114 IAHFDHERIPERIVHARGSA 133
Score = 54.0 bits (130), Expect = 7e-08
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 2 DLVASQVKRNPVTHLKDW----DMFWDFISLRPESTHQ-DWDM 39
D V + K P + D FWD++SL+PE+ H W M
Sbjct: 216 DFVHAV-KPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAM 257
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 263 bits (673), Expect = 2e-80
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
P PL +G++ L++NP NYFAE EQI+F P H+V G++ + D +LQGRL+SY DT
Sbjct: 302 FLPEEFAPLQVLGEMTLNRNPMNYFAETEQISFQPGHIVRGVDFTEDPLLQGRLYSYLDT 361
Query: 389 HRHRL-GPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG------PQES 441
+R GPN+ QLP+N P + V N RDG +Y P+ + Q
Sbjct: 362 QLNRHRGPNFEQLPINRPVS-GVHNNHRDGQGQAWIHKNIHHYSPSYLNKGYPAQANQTV 420
Query: 442 ERGRLSTFA--VSGDVARYNS-SDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNANDL 498
RG +T SG + R S + +D+++Q +F+N L+ E+ +++ I + +
Sbjct: 421 GRGFFTTPGRTASGVLNRELSATFDDHYTQPRLFFNSLTPVEQQFVINAIRFEASHVTNE 480
Query: 499 ------IQYLYN 504
++ L
Sbjct: 481 QVKKNVLEQLNK 492
Score = 133 bits (336), Expect = 2e-33
Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 40/125 (32%)
Query: 53 QDWDMFWDFISLRPESTH-QKRNPVTHLKDWDMFWDFISLRPESTHQDWDMFWDFISLRP 111
QD F D I H K +P +
Sbjct: 152 QDAIRFPDLI-------HSVKPSPDNEVPQ-----------------------------A 175
Query: 112 ESTHQDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFKLVNAEGKAVYC 171
+ H D WDF S +P + H S GIP YRHM+G+G HTF+LV +GK+
Sbjct: 176 ATAH---DSAWDFFSSQPSALHTLFWAMSGNGIPRSYRHMDGFGIHTFRLVTEDGKSKLV 232
Query: 172 KFHYK 176
K+H+K
Sbjct: 233 KWHWK 237
Score = 106 bits (266), Expect = 2e-24
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 213 NQSEDQESAGEEGGRFVQNPDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHF 272
E + N +TT G I++ L AG +G LL+DF + ++ HF
Sbjct: 2 EGGEVDARQRLKEVEVDDNGQFMTTDFGGNIEE-QFSLKAGGRGSTLLEDFIFRQKLQHF 60
Query: 273 DRERIPERVVHAKGAG 288
D ERIPERVVHA+GAG
Sbjct: 61 DHERIPERVVHARGAG 76
Score = 53.5 bits (129), Expect = 1e-07
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 2 DLVASQVKRNPVTHLKD----WDMFWDFISLRPESTHQ-DWDM 39
DL+ S K +P + D WDF S +P + H W M
Sbjct: 159 DLIHSV-KPSPDNEVPQAATAHDSAWDFFSSQPSALHTLFWAM 200
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium
janthinellum} PDB: 2xf2_A*
Length = 688
Score = 210 bits (537), Expect = 7e-61
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 11/180 (6%)
Query: 328 QVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPD 387
++ P P+ +G++ L++NP NYFAE EQ+ F P H+V G++ + D +LQGRLFSY D
Sbjct: 293 KIVPEELVPVTILGKMQLNRNPXNYFAETEQVMFQPGHIVRGVDFTEDPLLQGRLFSYLD 352
Query: 388 THRHRL-GPNYLQLPVNCPFATKVANYQRDGPMAFNNQGGAPNYFPNSFSG------PQE 440
T +R GPN+ QLP+N P A + N RDG Y PN+ + +
Sbjct: 353 TQLNRHGGPNFEQLPINRPRA-PIHNNNRDGAGQMFIPLDPNAYSPNTENKGSPKQANET 411
Query: 441 SERGRLSTFA--VSGDVARYNS-SDEDNFSQCTMFWNILSQDERDRLVDNIVGALKNAND 497
+G + SG + R S + E+N+SQ +FWN L +++ +VD N +
Sbjct: 412 VGKGFFTAPERTASGKLQRTLSTTFENNWSQPRLFWNSLVNAQKEFIVDAXRFETSNVSS 471
Score = 106 bits (267), Expect = 1e-24
Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 40/128 (31%)
Query: 53 QDWDMFWDFISLRPESTH-QKRNPVTHLKDWDMFWDFISLRPESTHQDWDMFWDFISLRP 111
QD +F D I H K +
Sbjct: 144 QDAILFPDLI-------HAVKPRGDNQIPQ-----------------------------A 167
Query: 112 ESTHQDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFKLVNAEGKAVYC 171
+ H D WDF S +P H + + GIP +RH+NG+G HTF+LV +GK
Sbjct: 168 ATAH---DSAWDFFSQQPSVLHTLLWAXAGHGIPRSFRHVNGFGVHTFRLVTDDGKTKLV 224
Query: 172 KFHYKVRK 179
KFH+K +
Sbjct: 225 KFHWKGLQ 232
Score = 104 bits (261), Expect = 6e-24
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 230 QNPDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
LT+ G PI D N L+AG +G LLQDF + ++I FD ER+PER VHA+G G
Sbjct: 11 DQDVYLTSNVGGPIQD-ENSLSAGQRGATLLQDFIFREKIQRFDHERVPERAVHARGTG 68
Score = 53.4 bits (128), Expect = 1e-07
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 2 DLVASQVKRNPVTHLKD----WDMFWDFISLRPESTHQ 35
DL+ + K + D WDF S +P H
Sbjct: 151 DLIHAV-KPRGDNQIPQAATAHDSAWDFFSQQPSVLHT 187
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase,
peroxidase, oxidoreductase; HET: HEM; 1.80A
{Mycobacterium avium subsp} PDB: 3e4y_A*
Length = 320
Score = 149 bits (378), Expect = 3e-41
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDT 388
W ++ VG + + + + + F P + GIEPS D +L+ R Y +
Sbjct: 247 AWQS--TQIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSAS 304
Query: 389 HRHRLGPNYL-QLP 401
+ R G + Q P
Sbjct: 305 VKLRTGVDRGAQAP 318
Score = 131 bits (331), Expect = 2e-34
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 103 FWDFI-SLRPE-STHQDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSHTFK 160
F D + ++RP +T + P +L IP Y +G H F+
Sbjct: 120 FIDLLKAMRPGLTTP---LRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFR 176
Query: 161 LVNAEGKAVYCKFHYK 176
+ A+G A + ++H
Sbjct: 177 WIAADGSARFVRYHLV 192
Score = 49.5 bits (119), Expect = 1e-06
Identities = 4/34 (11%), Positives = 8/34 (23%), Gaps = 5/34 (14%)
Query: 2 DLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQ 35
DL+ + + T + P
Sbjct: 122 DLLKAM-RPGLTTP----LRLATHLLTHPRLLGA 150
Score = 48.8 bits (117), Expect = 2e-06
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 256 GPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
L +D I + R +HAKG
Sbjct: 8 MSGGLTPDQAIDAIRGTGGAQPGCRALHAKGTL 40
Score = 43.0 bits (102), Expect = 2e-04
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 9/55 (16%)
Query: 2 DLVASQVKRNPVTHLKDWDM-FWDFI-SLRPE-STHQDWDMFWDFISLRPESTHQ 53
V++Q + F D + ++RP +T + P
Sbjct: 102 TDVSAQT---ARLLVSSTPEGFIDLLKAMRPGLTTP---LRLATHLLTHPRLLGA 150
Score = 42.6 bits (101), Expect = 2e-04
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 40 FWDFI-SLRPE-STHQDWDMFWDFISLRPESTHQ 71
F D + ++RP +T + P
Sbjct: 120 FIDLLKAMRPGLTTP---LRLATHLLTHPRLLGA 150
>1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme,
eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura
homomalla} SCOP: e.5.1.2
Length = 374
Score = 143 bits (361), Expect = 2e-38
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 329 VWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDK-------MLQGR 381
+W P ++ ++ + S +E+ AF+ ++ + K + + R
Sbjct: 292 LWDKETHPWFDLAKVSIKTPLSP--DVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELR 349
Query: 382 LFSYPDTHRHRLGPNYLQLPVN 403
+ Y R +P
Sbjct: 350 VAVYTWVQHLRKLKIGSLVPAG 371
Score = 108 bits (272), Expect = 3e-26
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 98 QDWDMFWDFISLRPESTH-QDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGS 156
+ DF+ ++ D +++ P + + R PD + H+ Y
Sbjct: 145 WNSPSLEDFV-------PVEEGDAAEEYVYKNPYYYYNLVEAL--RRAPDTFAHLYYYSQ 195
Query: 157 HTFKLVNAEGKAVYCKFHYK 176
T +GK YC++
Sbjct: 196 VTMPFKAKDGKVRYCRYRAL 215
Score = 42.1 bits (99), Expect = 3e-04
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 251 TAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAG 288
+ L+ + + + R H G G
Sbjct: 35 PVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTG 72
Score = 36.7 bits (85), Expect = 0.015
Identities = 6/60 (10%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 1 MDLVASQVKRNPVTHLKDWDMFWDFISLRPESTH-QDWDMFWDFISLRPESTHQDWDMFW 59
+D+V + + DF+ ++ D +++ P + +
Sbjct: 132 LDIVMNTG---EANIFWNSPSLEDFV-------PVEEGDAAEEYVYKNPYYYYNLVEALR 181
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein,
BI-functional enzyme, dioxygenase, fatty ACI
biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura
homomalla}
Length = 1066
Score = 99.2 bits (246), Expect = 4e-22
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 98 QDWDMFWDFISLRPESTHQDWDMFWDFISLRPESTHQTMILFSDRGIPDGYRHMNGYGSH 157
+ DF+ ++ D +++ P + + + R PD + H+ Y
Sbjct: 145 WNSPSLEDFV------PVEEGDAAEEYVYKNPYYYYNLVE--ALRRAPDTFAHLYYYSQV 196
Query: 158 TFKLVNAEGKAVYCKFHYK 176
T +GK YC++
Sbjct: 197 TMPFKAKDGKVRYCRYRAL 215
Score = 67.2 bits (163), Expect = 7e-12
Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 9/112 (8%)
Query: 316 APFTNYSSIFCHQVWPHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPD 375
+P + +W P ++ ++ + S +E+ AF+ ++ +
Sbjct: 279 SPDDTATIFHAGILWDKETHPWFDLAKVSIKTPLS--PDVLEKTAFNIANQPASLGLLEA 336
Query: 376 K-------MLQGRLFSYPDTHRHRLGPNYLQLPVNCPFATKVANYQRDGPMA 420
K + + R+ Y R +P V D A
Sbjct: 337 KSPEDYNSIGELRVAVYTWVQHLRKLKIGSLVPAGQNAIYNVEVETGDREHA 388
Score = 32.5 bits (73), Expect = 0.40
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 6/49 (12%)
Query: 246 KNNVLTAGPKGPVL------LQDFNYLDEISHFDRERIPERVVHAKGAG 288
+ T P PV L+ + + + R H G G
Sbjct: 24 IKDEHTPPPDSPVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTG 72
Score = 32.1 bits (72), Expect = 0.44
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 1 MDLVASQVKRNPVTHLKDWDMFWDFISLRPESTHQDWDMFWDFISLRPESTHQDWD 56
+D+V + DF+ ++ D +++ P + +
Sbjct: 132 LDIVM---NTGEANIFWNSPSLEDFV------PVEEGDAAEEYVYKNPYYYYNLVE 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 5e-09
Identities = 77/490 (15%), Positives = 145/490 (29%), Gaps = 189/490 (38%)
Query: 42 DFISLRPES-THQDWDMFWDFISLR-----PESTHQKRNPVTHLKDWDMFWDFISLRPES 95
D S RP + +H SL P ++ + L++ F + PE
Sbjct: 2 DAYSTRPLTLSHG---------SLEHVLLVPTASFF---IASQLQE-----QFNKILPEP 44
Query: 96 THQDWDMFWDFISLRPESTHQDWDMFWDFISLRPESTHQ---TMIL------FSDRGIPD 146
T + F P + + F ++S E + +L F +
Sbjct: 45 T----EGFAA--DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC---- 94
Query: 147 GYRHMNGYGSHTF--KLVNAEGKAV-----YCKFHYKVR---KRHQKRQNTS-LCECGAA 195
++ G H KL+ + K + R KR +++ S L
Sbjct: 95 ---YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 196 SHKRLL-----------YF--------------------SRMIITPEKNQSEDQESAGEE 224
+ +L+ YF S ++ + D E +
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 225 G---GRFVQNPDTLTTATGNPIDDKNNVLTAGPKGPV------LLQDFNYLD-----EIS 270
G +++NP P DK+ +L+ P+ ++Q +Y+ +
Sbjct: 212 GLNILEWLENPSNT------P--DKDYLLSI----PISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 271 HFD-RERIPERVVHAKG--AGELFLLSLSYD-----YRKGKEFLLSLHYRKGAAPFTNYS 322
+ R + H++G + S++ RK L + R
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR---------- 309
Query: 323 SIFCHQVWPHREFPL------IEVGQLVLDKNPS--------------------N-YFAE 355
C++ +P+ P +E + PS N +
Sbjct: 310 ---CYEAYPNTSLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 356 VEQIAFS----PSHLV----P----GIEPS------PDKMLQGRLFSYPDTHRH-RLGPN 396
+Q+ S +LV P G+ + P + Q R+ P + R +
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI---PFSERKLKFSNR 419
Query: 397 YLQLPVNCPF 406
+L PV PF
Sbjct: 420 FL--PVASPF 427
Score = 29.2 bits (65), Expect = 4.4
Identities = 29/211 (13%), Positives = 52/211 (24%), Gaps = 82/211 (38%)
Query: 227 RFVQNPDTLTTATGNPIDDKNNVLTAGPKGPV-LLQDFNYLDEISHFDRERIPERVVHAK 285
+F + L T D P P L+ F + + P +V
Sbjct: 36 QFNK---ILPEPTEGFAADDE------PTTPAELVGKF-----LGYVSSLVEPSKVGQFD 81
Query: 286 GAGELFLLSLSY---DYRKGKEFLLSLHYRKGAAPFTNYSSIFCHQVWPHREFPLIEVGQ 342
++ L L+ Y +G + +H ++ + L++ +
Sbjct: 82 ---QVLNLCLTEFENCYLEGND----IH-------------ALAAKLLQENDTTLVKTKE 121
Query: 343 LVLDKNPSNYFA--EVEQIAFSPSHLVPGIEPSPDKMLQGRLFSYPDTHRHRLGPNYLQL 400
L+ NY + + F S LF +L
Sbjct: 122 LI-----KNYITARIMAKRPFDKKS------NSA-------LFRAVGEGNAQL---VAI- 159
Query: 401 PVNCPFATKVANYQRDGPMAFNNQGGAPNYF 431
F QG +YF
Sbjct: 160 --------------------FGGQGNTDDYF 170
Score = 28.5 bits (63), Expect = 7.8
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 17/77 (22%)
Query: 230 QNPDTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERVVHAKGAGE 289
NP LT + G KG + ++++ + + D + E++ E
Sbjct: 1667 NNPVNLT------------IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-----KE 1709
Query: 290 LFLLSLSYDYRKGKEFL 306
+ S SY +R K L
Sbjct: 1710 INEHSTSYTFRSEKGLL 1726
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.085
Identities = 61/408 (14%), Positives = 116/408 (28%), Gaps = 103/408 (25%)
Query: 3 LVASQVKRNPVTHLKDWDMFWDFISL-RPESTHQDWDMFWDFISLRPESTHQDWDMFWDF 61
+ V D+ +FW ++L S +M + + D +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN- 222
Query: 62 ISLRPESTHQKRNPVTHLKDWDMFWDFISLRPESTHQD-WDMFWDFISLRPESTHQDWDM 120
I LR S + LK + L + + + W+
Sbjct: 223 IKLRIHSIQAELR--RLLKSKPYENCLLVLL------NVQNA-------------KAWNA 261
Query: 121 FWDFISLRPESTHQTMILFSDRGIPD-----GYRHMNGYGSHTFKLVNAEGKAVYCKF-H 174
F + + ++ + + D H++ H+ L E K++ K+
Sbjct: 262 F-NLSC-------KILLTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLD 312
Query: 175 YKVRK-RHQKRQNTSLCECGAASHKRLLYFSRMIITPEKNQSEDQESAGEEGGRFVQ-NP 232
+ + + A R + T + + N
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIR-----DGLATWD---------------NWKHVNC 352
Query: 233 DTLTTATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHF-DRERIPERVV-----HAKG 286
D LTT I+ NVL P + D +S F IP ++
Sbjct: 353 DKLTTI----IESSLNVLE-----PAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 287 AGELFLLSLSYDY----RKGKEFLLSLH--YRKGAAPFTNYSSIFCH-----QVWPHREF 335
+ + +++ + Y ++ KE +S+ Y + N ++ H + F
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTF 459
Query: 336 PLIEVGQLVLDKNPSNYFAEVEQIAFSPSHLVPGIEPSPDKMLQGRLF 383
++ LD YF I HL IE L +F
Sbjct: 460 DSDDLIPPYLD----QYFY--SHIGH---HL-KNIEHPERMTLFRMVF 497
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.12
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 12/34 (35%)
Query: 376 KMLQGRLFSY-PDTHRHRLGPNYLQLPVNCPFAT 408
K LQ L Y D+ P L + AT
Sbjct: 23 KKLQASLKLYADDS-----AP---ALAIK---AT 45
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for
structural genomics of infec diseases, csgid,
transferase; HET: MSE; 1.89A {Yersinia pestis} PDB:
1td2_A* 1vi9_A*
Length = 289
Score = 30.5 bits (69), Expect = 1.3
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 12/103 (11%)
Query: 207 IITPEKNQSEDQESAGEEGGRFVQNPDTLTTATGNPIDD--KNNVLTAGPKGPVLLQDFN 264
+I P N E ++ +GE V+N + + K ++ + F
Sbjct: 144 MIAP--NLLELEQLSGER----VENVEQAVQVARSLCARGPKVVLVKHLSRAGYHADCFE 197
Query: 265 YL----DEISHFDRERIPERVVHAKGAGELFLLSLSYDYRKGK 303
L D+ H R + G G+L L + KG+
Sbjct: 198 MLLVTADDAWHICRPLVDFGKRQPVGVGDLTSGLLLVNLLKGE 240
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD,
antiparallel coil, motor protein, DSH; NMR
{Chlamydomonas reinhardtii}
Length = 155
Score = 29.5 bits (67), Expect = 1.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 259 LLQDFNYLDEISHFDRERIPERVV 282
+L +F++LD + FD++ IP V+
Sbjct: 78 MLMEFDFLDSLRKFDKDHIPPEVI 101
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded
beta-propeller, six- bladed beta-propeller; 1.79A
{Geobacillus stearothermophilus} SCOP: b.68.10.1
Length = 323
Score = 30.2 bits (69), Expect = 1.5
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 123 DFIS-LRPESTHQTMILFSDRG---------IPDGYR 149
D + + +T ++LF+++G +PD
Sbjct: 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW 75
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO
gyrase, DNA binding protein, isomerase; HET: DNA GOL;
1.30A {Aquifex aeolicus}
Length = 276
Score = 29.8 bits (68), Expect = 1.7
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 10/37 (27%)
Query: 123 DFIS-LRPESTHQTMILFSDRG---------IPDGYR 149
+ + + + L S+RG G +
Sbjct: 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK 60
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta
pinwheel, DNA wrapping, isomerase, DNA bindng protein;
HET: DNA; 2.60A {Escherichia coli}
Length = 307
Score = 29.8 bits (68), Expect = 1.8
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 15/47 (31%)
Query: 113 STHQDWDMFWDFIS-LRPESTHQTMILFSDRG---------IPDGYR 149
++ DFI L +TH ++ FS RG +P+ R
Sbjct: 37 RIKEE-----DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 78
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase,
isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Length = 327
Score = 29.8 bits (68), Expect = 2.1
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 15/47 (31%)
Query: 113 STHQDWDMFWDFIS-LRPESTHQTMILFSDRG---------IPDGYR 149
QD D ++ STH ++ F+ +G +P+ R
Sbjct: 37 GLKQD-----DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR 78
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller,
beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia
burgdorferi} SCOP: b.68.10.1
Length = 312
Score = 29.4 bits (67), Expect = 2.5
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 15/47 (31%)
Query: 113 STHQDWDMFWDFIS-LRPESTHQTMILFSDRG---------IPDGYR 149
+ D I +TH + + S+ G I D R
Sbjct: 42 DLNDG-----DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 28.7 bits (65), Expect = 4.1
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 123 DFIS-LRPESTHQTMILFSDRG---------IPDGYR 149
DFI L +TH T++ F+ G +P+
Sbjct: 46 DFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82
>2hv2_A Hypothetical protein; PSI, protein structure initiative, midwest
center for struct genomics, MCSG, structural genomics,
unknown function; HET: EPE PG4; 2.40A {Enterococcus
faecalis} SCOP: d.106.1.4 d.108.1.10
Length = 400
Score = 28.9 bits (64), Expect = 4.2
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 90 SLRPESTHQDWDMFWDFISLRPESTHQDWDM---FWDFISLRPESTHQTMILFSDRGIPD 146
+++ S ++ D + + D+ R + I +S G +
Sbjct: 155 TIKRVSWADGKEVIKDVYLENQRAHSGGVIRETWWLDYTLNRASKPNNQAIYYSSEGKAE 214
Query: 147 GYRHM 151
GY
Sbjct: 215 GYVIY 219
>1isi_A Bone marrow stromal cell antigen 1; ADP ribosyl cyclase, NAD
glycohydrolase, CNS, ethenonad, HYD; HET: NAG ENQ;
2.10A {Homo sapiens} SCOP: c.23.14.3 PDB: 1isg_A*
1isf_A* 1ish_A* 1isj_A* 1ism_A*
Length = 265
Score = 28.5 bits (63), Expect = 4.4
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 19 WDMFWDFISLRP-ESTHQDWDMFWDFISLRPESTHQDWDMFW 59
W+ F + P D+D FI+L S +D +FW
Sbjct: 39 WEAFKVALDKDPCSVLPSDYD---LFITLSRHSIPRDKSLFW 77
Score = 28.5 bits (63), Expect = 4.4
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 82 WDMFWDFISLRP-ESTHQDWDMFWDFISLRPESTHQDWDMFW 122
W+ F + P D+D FI+L S +D +FW
Sbjct: 39 WEAFKVALDKDPCSVLPSDYD---LFITLSRHSIPRDKSLFW 77
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 28.7 bits (65), Expect = 4.6
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 305 FLLSLHYRKGAAPFTNYSSIFCHQVW-PHREFPLIEVGQLVLDKNPSNYFAEVEQIAFSP 363
F+++ YR+ S++ Q P + + V KNP +A + QI +
Sbjct: 41 FMVNPKYRE-HLGLCQASAVVMTQDDLPFAKSAALVV------KNPYLTYARMAQILDTT 93
Query: 364 SHLVPGIEPS 373
I PS
Sbjct: 94 PQPAQNIAPS 103
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide;
transferase; 2.30A {Saccharomyces cerevisiae} SCOP:
a.60.8.2
Length = 187
Score = 28.0 bits (61), Expect = 5.9
Identities = 15/105 (14%), Positives = 26/105 (24%)
Query: 177 VRKRHQKRQNTSLCECGAASHKRLLYFSRMIITPEKNQSEDQESAGEEGGRFVQNPDTLT 236
+++ +R+ K L + + T +D + + T
Sbjct: 25 IKEALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSET 84
Query: 237 TATGNPIDDKNNVLTAGPKGPVLLQDFNYLDEISHFDRERIPERV 281
D T G L YL S F + V
Sbjct: 85 REKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAV 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.440
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,997,409
Number of extensions: 480245
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 114
Length of query: 504
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 406
Effective length of database: 3,965,535
Effective search space: 1610007210
Effective search space used: 1610007210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)