Query psy2592
Match_columns 217
No_of_seqs 223 out of 1874
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 20:06:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0677|consensus 100.0 3.8E-36 8.2E-41 258.6 7.8 141 18-171 51-213 (389)
2 KOG0676|consensus 100.0 1.3E-35 2.9E-40 268.3 9.5 140 16-168 50-206 (372)
3 PTZ00452 actin; Provisional 100.0 1.6E-32 3.5E-37 250.0 12.2 131 17-160 49-201 (375)
4 PTZ00281 actin; Provisional 100.0 4.6E-31 9.9E-36 240.4 12.6 130 17-159 50-201 (376)
5 PTZ00466 actin-like protein; P 100.0 4.3E-31 9.2E-36 241.2 12.3 130 17-160 56-207 (380)
6 KOG0679|consensus 100.0 9.6E-30 2.1E-34 227.6 11.3 128 18-158 55-205 (426)
7 PTZ00004 actin-2; Provisional 100.0 2.3E-29 4.9E-34 229.3 12.1 130 17-159 50-201 (378)
8 PTZ00280 Actin-related protein 100.0 2.6E-29 5.7E-34 231.2 12.2 129 18-159 52-212 (414)
9 COG5277 Actin and related prot 99.9 2.4E-26 5.2E-31 213.4 11.1 132 17-161 51-215 (444)
10 PF00022 Actin: Actin; InterP 99.9 2.9E-26 6.2E-31 208.1 9.3 128 19-159 45-194 (393)
11 KOG0678|consensus 99.9 5.2E-26 1.1E-30 200.5 8.2 127 18-157 57-212 (415)
12 smart00268 ACTIN Actin. ACTIN 99.9 2.9E-25 6.3E-30 200.8 12.2 127 19-158 46-194 (373)
13 cd00012 ACTIN Actin; An ubiqui 99.9 1.1E-24 2.5E-29 197.0 12.0 129 17-158 43-194 (371)
14 KOG0681|consensus 99.9 8.1E-22 1.8E-26 182.9 9.6 120 20-153 66-214 (645)
15 KOG0680|consensus 99.8 4E-21 8.7E-26 169.4 7.6 134 15-161 37-206 (400)
16 PRK13930 rod shape-determining 99.7 2.9E-16 6.4E-21 140.0 10.6 128 11-154 34-197 (335)
17 PRK13929 rod-share determining 99.6 1.3E-15 2.9E-20 136.9 11.5 133 6-154 25-195 (335)
18 PRK13927 rod shape-determining 99.6 3.8E-15 8.1E-20 133.1 9.2 127 11-153 31-192 (334)
19 TIGR00904 mreB cell shape dete 99.6 6.3E-15 1.4E-19 131.9 10.4 119 20-154 45-195 (333)
20 PRK13928 rod shape-determining 99.4 2.4E-12 5.3E-17 115.4 10.4 128 10-153 28-191 (336)
21 KOG0797|consensus 99.3 1.8E-11 3.9E-16 113.9 10.3 128 21-161 168-329 (618)
22 PF06723 MreB_Mbl: MreB/Mbl pr 98.3 3.7E-06 8E-11 75.9 9.5 129 10-154 26-190 (326)
23 KOG0676|consensus 97.7 1E-05 2.2E-10 74.1 1.1 49 150-206 16-64 (372)
24 TIGR02529 EutJ ethanolamine ut 97.6 0.00022 4.8E-09 61.5 8.1 103 32-152 29-151 (239)
25 KOG0677|consensus 97.3 7.4E-05 1.6E-09 65.6 0.5 53 151-211 14-69 (389)
26 PTZ00452 actin; Provisional 97.0 0.0003 6.5E-09 64.5 1.5 53 151-211 15-68 (375)
27 PTZ00466 actin-like protein; P 97.0 0.00032 6.8E-09 64.5 1.6 52 152-211 23-75 (380)
28 COG1077 MreB Actin-like ATPase 96.8 0.0079 1.7E-07 54.3 8.8 120 19-153 46-197 (342)
29 PRK15080 ethanolamine utilizat 96.7 0.0099 2.1E-07 52.0 8.9 103 32-152 56-178 (267)
30 PTZ00281 actin; Provisional 96.7 0.00066 1.4E-08 62.1 1.5 53 151-211 16-69 (376)
31 KOG0678|consensus 96.3 0.0022 4.8E-08 57.9 1.9 64 150-213 13-76 (415)
32 PTZ00004 actin-2; Provisional 96.0 0.0034 7.3E-08 57.5 1.6 53 151-211 16-69 (378)
33 PTZ00280 Actin-related protein 95.4 0.0075 1.6E-07 55.8 1.8 53 151-211 14-70 (414)
34 COG5277 Actin and related prot 95.0 0.0091 2E-07 56.2 1.1 52 150-208 15-66 (444)
35 KOG0679|consensus 93.5 0.031 6.8E-07 51.4 1.1 55 150-213 20-76 (426)
36 TIGR01991 HscA Fe-S protein as 92.5 0.68 1.5E-05 45.1 8.9 99 43-155 108-232 (599)
37 PRK13410 molecular chaperone D 91.9 0.77 1.7E-05 45.5 8.5 79 64-154 136-237 (668)
38 TIGR02350 prok_dnaK chaperone 91.4 0.94 2E-05 43.9 8.4 78 64-153 131-232 (595)
39 PTZ00400 DnaK-type molecular c 91.1 1.1 2.4E-05 44.3 8.6 79 64-154 175-276 (663)
40 cd00012 ACTIN Actin; An ubiqui 91.0 0.11 2.3E-06 47.1 1.3 49 151-207 9-57 (371)
41 PLN03184 chloroplast Hsp70; Pr 90.7 1.2 2.6E-05 44.1 8.5 101 40-154 148-274 (673)
42 PRK00290 dnaK molecular chaper 90.5 1.3 2.9E-05 43.2 8.6 78 64-153 134-234 (627)
43 PRK05183 hscA chaperone protei 90.2 1.5 3.2E-05 43.0 8.5 98 43-154 128-251 (616)
44 smart00268 ACTIN Actin. ACTIN 89.8 0.15 3.3E-06 46.1 1.3 47 152-207 12-58 (373)
45 PF00012 HSP70: Hsp70 protein; 89.8 0.59 1.3E-05 44.8 5.4 79 64-154 136-238 (602)
46 PRK13411 molecular chaperone D 89.6 1.7 3.7E-05 42.9 8.5 79 64-154 134-236 (653)
47 PTZ00009 heat shock 70 kDa pro 88.9 1.1 2.4E-05 44.1 6.7 79 64-154 141-244 (653)
48 CHL00094 dnaK heat shock prote 88.6 2.3 4.9E-05 41.7 8.5 98 43-154 114-237 (621)
49 PRK01433 hscA chaperone protei 88.5 2.4 5.2E-05 41.4 8.6 98 43-154 120-243 (595)
50 PTZ00186 heat shock 70 kDa pre 86.6 1.8 4E-05 42.8 6.6 79 64-154 161-262 (657)
51 TIGR01174 ftsA cell division p 83.7 1.2 2.5E-05 40.5 3.5 40 97-151 198-238 (371)
52 PF00022 Actin: Actin; InterP 83.3 0.48 1E-05 43.0 0.8 42 152-206 15-56 (393)
53 COG0443 DnaK Molecular chapero 79.6 10 0.00022 37.0 8.6 80 63-154 120-222 (579)
54 TIGR03739 PRTRC_D PRTRC system 78.3 12 0.00026 33.3 8.1 125 16-157 54-218 (320)
55 PRK09472 ftsA cell division pr 71.4 4.5 9.7E-05 37.6 3.6 41 97-152 206-247 (420)
56 cd08627 PI-PLCc_gamma1 Catalyt 71.2 5.7 0.00012 34.4 3.9 45 43-93 74-118 (229)
57 cd08632 PI-PLCc_eta1 Catalytic 71.1 5.7 0.00012 34.9 3.9 44 43-92 74-117 (253)
58 cd08630 PI-PLCc_delta3 Catalyt 70.6 5.9 0.00013 34.9 3.9 45 43-93 74-118 (258)
59 cd08629 PI-PLCc_delta1 Catalyt 70.0 6 0.00013 34.8 3.9 44 43-92 74-117 (258)
60 cd08596 PI-PLCc_epsilon Cataly 69.9 6.2 0.00013 34.7 3.9 45 43-93 74-118 (254)
61 cd08626 PI-PLCc_beta4 Catalyti 69.9 6.1 0.00013 34.8 3.8 44 43-92 76-119 (257)
62 cd08595 PI-PLCc_zeta Catalytic 69.3 6.4 0.00014 34.6 3.8 44 43-92 74-117 (257)
63 PRK11678 putative chaperone; P 69.2 35 0.00075 32.3 9.0 119 18-149 84-260 (450)
64 cd08593 PI-PLCc_delta Catalyti 69.1 6.4 0.00014 34.6 3.8 45 42-92 73-117 (257)
65 cd08633 PI-PLCc_eta2 Catalytic 68.5 7 0.00015 34.3 3.9 45 43-93 74-118 (254)
66 cd08631 PI-PLCc_delta4 Catalyt 68.1 6.9 0.00015 34.4 3.8 44 43-92 74-117 (258)
67 cd08594 PI-PLCc_eta Catalytic 67.9 7.4 0.00016 33.6 3.9 47 42-94 73-119 (227)
68 cd08591 PI-PLCc_beta Catalytic 67.4 7.3 0.00016 34.3 3.8 45 43-93 76-120 (257)
69 TIGR01175 pilM type IV pilus a 65.1 7.9 0.00017 34.5 3.7 40 97-151 190-230 (348)
70 cd08598 PI-PLC1c_yeast Catalyt 65.1 8.7 0.00019 33.3 3.8 46 43-94 74-119 (231)
71 cd08592 PI-PLCc_gamma Catalyti 64.9 8.8 0.00019 33.2 3.8 45 43-93 74-118 (229)
72 cd08558 PI-PLCc_eukaryota Cata 62.7 9.6 0.00021 32.9 3.6 49 43-97 74-122 (226)
73 cd08597 PI-PLCc_PRIP_metazoa C 62.5 9.9 0.00021 33.5 3.7 45 43-93 74-118 (260)
74 cd08623 PI-PLCc_beta1 Catalyti 61.5 11 0.00024 33.2 3.8 45 43-93 76-121 (258)
75 PF11104 PilM_2: Type IV pilus 61.3 8.4 0.00018 34.6 3.2 40 98-152 183-223 (340)
76 TIGR03367 queuosine_QueD queuo 60.4 12 0.00025 27.4 3.3 50 35-91 42-91 (92)
77 cd08624 PI-PLCc_beta2 Catalyti 60.3 12 0.00025 33.1 3.8 44 43-92 76-120 (261)
78 COG4972 PilM Tfp pilus assembl 59.2 12 0.00025 34.4 3.6 42 97-152 195-236 (354)
79 cd08628 PI-PLCc_gamma2 Catalyt 58.8 13 0.00028 32.6 3.8 44 43-92 74-117 (254)
80 cd08625 PI-PLCc_beta3 Catalyti 55.7 15 0.00032 32.4 3.6 44 43-92 76-120 (258)
81 COG0849 ftsA Cell division ATP 53.3 15 0.00033 34.5 3.6 41 97-151 205-245 (418)
82 PRK13917 plasmid segregation p 51.8 27 0.00058 31.6 4.8 46 97-155 187-233 (344)
83 PLN02222 phosphoinositide phos 50.7 18 0.00039 35.5 3.7 44 43-92 176-219 (581)
84 PLN02230 phosphoinositide phos 50.3 19 0.00042 35.4 3.8 44 43-92 187-230 (598)
85 PLN02223 phosphoinositide phos 50.1 21 0.00045 34.7 4.0 45 43-92 179-223 (537)
86 PRK10719 eutA reactivating fac 49.2 28 0.0006 33.3 4.6 112 32-159 55-207 (475)
87 PLN02952 phosphoinositide phos 49.0 22 0.00047 35.1 4.0 44 43-92 196-239 (599)
88 PLN02228 Phosphoinositide phos 46.7 24 0.00052 34.5 3.9 44 43-92 179-222 (567)
89 TIGR00039 6PTHBS 6-pyruvoyl te 45.8 21 0.00045 27.5 2.7 52 35-91 44-95 (124)
90 cd08599 PI-PLCc_plant Catalyti 45.2 31 0.00068 29.8 4.0 44 43-92 74-117 (228)
91 KOG0169|consensus 42.7 29 0.00062 34.9 3.7 44 43-92 361-404 (746)
92 PF02201 SWIB: SWIB/MDM2 domai 39.1 32 0.00069 24.2 2.6 34 39-73 20-53 (76)
93 PF14183 YwpF: YwpF-like prote 38.2 38 0.00081 27.0 3.1 92 32-161 23-126 (135)
94 KOG1265|consensus 37.3 39 0.00085 34.9 3.7 33 60-92 399-431 (1189)
95 TIGR01568 A_thal_3678 uncharac 35.1 38 0.00082 23.7 2.4 20 34-53 23-42 (66)
96 PF06406 StbA: StbA protein; 31.6 56 0.0012 29.1 3.5 49 96-157 165-215 (318)
97 KOG2971|consensus 27.0 1.6E+02 0.0035 26.1 5.4 91 63-171 152-256 (299)
98 smart00148 PLCXc Phospholipase 26.1 1E+02 0.0023 23.9 3.9 33 59-92 84-116 (135)
99 cd00470 PTPS 6-pyruvoyl tetrah 23.8 71 0.0015 25.0 2.5 53 35-92 56-110 (135)
100 COG4820 EutJ Ethanolamine util 23.6 1.1E+02 0.0023 26.6 3.6 87 32-134 61-166 (277)
101 PF01242 PTPS: 6-pyruvoyl tetr 23.0 54 0.0012 24.8 1.6 51 35-92 42-96 (123)
102 KOG0681|consensus 22.9 22 0.00047 34.7 -0.7 25 150-174 32-56 (645)
103 PRK12338 hypothetical protein; 22.4 2.6E+02 0.0057 25.3 6.1 90 38-151 160-266 (319)
104 smart00151 SWIB SWI complex, B 22.4 75 0.0016 22.3 2.2 33 38-71 19-51 (77)
No 1
>KOG0677|consensus
Probab=100.00 E-value=3.8e-36 Score=258.55 Aligned_cols=141 Identities=27% Similarity=0.429 Sum_probs=132.9
Q ss_pred CceeeCcccccCCC-----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 18 YERFLGPEIFFHPE-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 18 ~~~~vG~ea~~~~~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
||.+|||||...+. |||+||+|.|||+|+++|+|+|.++|+++|.++.+|+||||+||.++||||+|+|||++++
T Consensus 51 KD~mvGdeaselRs~L~i~YPmeNGivrnwddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F 130 (389)
T KOG0677|consen 51 KDLMVGDEASELRSLLDINYPMENGIVRNWDDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGF 130 (389)
T ss_pred hhheccchHHHHHHHHhcCCccccccccChHHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCC
Confidence 78999999987664 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cce----------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHHhh
Q psy2592 93 GTI----------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYTKL 155 (217)
Q Consensus 93 psl----------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~K~ 155 (217)
.++ +|+|||+| +++| |++||++|+.++|-.+ ++++|+++|+||.+++.++
T Consensus 131 ~gvyvaiQAVLtLYAQGL~tGvVvDSG------DGVT-------Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~r 197 (389)
T KOG0677|consen 131 GGVYVAIQAVLTLYAQGLLTGVVVDSG------DGVT-------HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRR 197 (389)
T ss_pred CeEEehHHHHHHHHHhcccceEEEecC------CCee-------EEeeeecceehhhhhhhccccchhHHHHHHHHHHhh
Confidence 875 79999999 9999 9999999999999999 9999999999999999999
Q ss_pred CccCCCCCceeeeeee
Q psy2592 156 GFAANKEPQFIIPSAI 171 (217)
Q Consensus 156 Gfag~~~P~~~~ps~V 171 (217)
||+++....++....+
T Consensus 198 GYafN~tADFETVR~i 213 (389)
T KOG0677|consen 198 GYAFNHTADFETVREI 213 (389)
T ss_pred ccccccccchHHHHHH
Confidence 9999998777655444
No 2
>KOG0676|consensus
Probab=100.00 E-value=1.3e-35 Score=268.29 Aligned_cols=140 Identities=29% Similarity=0.495 Sum_probs=131.2
Q ss_pred CCCceeeCcccccCCC--ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 16 VGYERFLGPEIFFHPE--YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 16 ~~~~~~vG~ea~~~~~--~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
..++.|||++|...+. +||+||+|+|||+||+||+|+|++.|++.|++||||+||+|+||+++||+|+|+|||+||+|
T Consensus 50 ~~~~~~vg~~a~~~~~l~~Pie~Giv~~wd~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvp 129 (372)
T KOG0676|consen 50 TQKDTYVGDEAESKRTLKYPIERGIVTDWDDMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVP 129 (372)
T ss_pred cccccccchhhhccccccCccccccccchHHHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCcc
Confidence 4578999999988775 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ce--------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHHhhCcc
Q psy2592 94 TI--------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYTKLGFA 158 (217)
Q Consensus 94 sl--------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~K~Gfa 158 (217)
++ +|+|||+| +++| +++||++|+++++++. +++||+++|+||+..|.+.|++
T Consensus 130 a~yva~qavlya~g~ttG~VvD~G------~gvt-------~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s 196 (372)
T KOG0676|consen 130 ALYVAIQAVLYASGRTTGLVVDSG------DGVT-------HVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYS 196 (372)
T ss_pred HhHHHHHHHHHHcCCeeEEEEEcC------CCce-------eeeecccccccchhhheecccchhhHHHHHHHHHhcccc
Confidence 87 69999999 9999 9999999999999999 9999999999999999999988
Q ss_pred CCCCCceeee
Q psy2592 159 ANKEPQFIIP 168 (217)
Q Consensus 159 g~~~P~~~~p 168 (217)
.....+..+.
T Consensus 197 ~~~~~~~eIv 206 (372)
T KOG0676|consen 197 FTTSAEFEIV 206 (372)
T ss_pred cccccHHHHH
Confidence 7766665553
No 3
>PTZ00452 actin; Provisional
Probab=99.98 E-value=1.6e-32 Score=250.03 Aligned_cols=131 Identities=21% Similarity=0.386 Sum_probs=123.1
Q ss_pred CCceeeCcccccCCC-----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhcc
Q psy2592 17 GYERFLGPEIFFHPE-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLT 91 (217)
Q Consensus 17 ~~~~~vG~ea~~~~~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~ 91 (217)
.+++|+|+++...+. +||++|+|.|||++|.+|+|+|++.|+++|+++|+|+|||+++++.+|++|+|+|||+|+
T Consensus 49 ~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~ 128 (375)
T PTZ00452 49 NKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFN 128 (375)
T ss_pred ccceEEChhhhccccCcEEcccCcCCEEcCHHHHHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccC
Confidence 457899999876553 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCce----------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHHh
Q psy2592 92 EGTI----------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 92 vpsl----------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~K 154 (217)
+|++ +|+|||+| ++.| +|+||++|+++++++. +++||+++|+||.+++.+
T Consensus 129 vp~~~~~~~~~lslya~g~~tglVVDiG------~~~t-------~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~ 195 (375)
T PTZ00452 129 TPCLYISNEAVLSLYTSGKTIGLVVDSG------EGVT-------HCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQE 195 (375)
T ss_pred CceEEEechHHHHHHHCCCceeeeecCC------CCcc-------eEEEEECCEEeccceEEeeccchHHHHHHHHHHHh
Confidence 9987 69999999 9999 9999999999999999 999999999999999998
Q ss_pred hCccCC
Q psy2592 155 LGFAAN 160 (217)
Q Consensus 155 ~Gfag~ 160 (217)
.|+...
T Consensus 196 ~~~~~~ 201 (375)
T PTZ00452 196 LGYSLT 201 (375)
T ss_pred cCCCCC
Confidence 887543
No 4
>PTZ00281 actin; Provisional
Probab=99.97 E-value=4.6e-31 Score=240.38 Aligned_cols=130 Identities=31% Similarity=0.532 Sum_probs=122.2
Q ss_pred CCceeeCcccccCCC-----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhcc
Q psy2592 17 GYERFLGPEIFFHPE-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLT 91 (217)
Q Consensus 17 ~~~~~vG~ea~~~~~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~ 91 (217)
++++|+|+++...+. +|+++|+|.|||++|++|+|+|++.|+++|+++|||+|||+++++..|++|+|+|||+|+
T Consensus 50 ~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~ 129 (376)
T PTZ00281 50 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 129 (376)
T ss_pred cCCeEECchhhccccCcEEeccCcCCEEcCHHHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccC
Confidence 467899999876543 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCce----------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHHh
Q psy2592 92 EGTI----------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 92 vpsl----------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~K 154 (217)
+|++ +|+|||+| ++.| +|+||++|+++.++++ +++||+++|+||.+++.+
T Consensus 130 vp~~~~~~~~~ls~ya~g~~tglVVDiG------~~~t-------~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~ 196 (376)
T PTZ00281 130 TPAMYVAIQAVLSLYASGRTTGIVMDSG------DGVS-------HTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTE 196 (376)
T ss_pred CceeEeeccHHHHHHhcCCceEEEEECC------CceE-------EEEEEEecccchhheeeccCcHHHHHHHHHHHHHh
Confidence 9986 69999999 9999 9999999999999999 999999999999999988
Q ss_pred hCccC
Q psy2592 155 LGFAA 159 (217)
Q Consensus 155 ~Gfag 159 (217)
.|+..
T Consensus 197 ~~~~~ 201 (376)
T PTZ00281 197 RGYSF 201 (376)
T ss_pred cCCCC
Confidence 88754
No 5
>PTZ00466 actin-like protein; Provisional
Probab=99.97 E-value=4.3e-31 Score=241.17 Aligned_cols=130 Identities=25% Similarity=0.405 Sum_probs=121.2
Q ss_pred CCceeeCcccccCCC-----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhcc
Q psy2592 17 GYERFLGPEIFFHPE-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLT 91 (217)
Q Consensus 17 ~~~~~vG~ea~~~~~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~ 91 (217)
.+++|||+++...+. +||++|+|+|||.+|.+|+|+| +.|+++|+++|||+||++++++.+|++|+|+|||+|+
T Consensus 56 ~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~ 134 (380)
T PTZ00466 56 EGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDMENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFN 134 (380)
T ss_pred CCCeEECchhhhhCcCceeCccccCCeECCHHHHHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCC
Confidence 357899999876553 8999999999999999999998 7899999999999999999999999999999999999
Q ss_pred CCce----------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHHh
Q psy2592 92 EGTI----------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 92 vpsl----------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~K 154 (217)
+|++ +|+|||+| ++.| +|+||++|+++.+++. +++||+++|+||.+++.+
T Consensus 135 ~p~~~~~~~~~lsl~a~g~~tglVVD~G------~~~t-------~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~ 201 (380)
T PTZ00466 135 VPALFISIQAILSLYSCGKTNGTVLDCG------DGVC-------HCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRK 201 (380)
T ss_pred CCeEEEecchHHHHHhcCCceEEEEeCC------CCce-------EEEEEECCEEeecceeEecCchhHHHHHHHHHHHh
Confidence 9987 69999999 9999 9999999999999999 999999999999999998
Q ss_pred hCccCC
Q psy2592 155 LGFAAN 160 (217)
Q Consensus 155 ~Gfag~ 160 (217)
.|+..+
T Consensus 202 ~~~~~~ 207 (380)
T PTZ00466 202 NGHLFN 207 (380)
T ss_pred cCCCCC
Confidence 886543
No 6
>KOG0679|consensus
Probab=99.96 E-value=9.6e-30 Score=227.61 Aligned_cols=128 Identities=24% Similarity=0.339 Sum_probs=120.7
Q ss_pred CceeeCcccccCCC------ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhcc
Q psy2592 18 YERFLGPEIFFHPE------YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLT 91 (217)
Q Consensus 18 ~~~~vG~ea~~~~~------~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~ 91 (217)
+.+||+++++..++ .|+++|+|.|||.++.+|+|+|.++|+++|++||+|+|||+||++++|||++|+|||+++
T Consensus 55 ~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~n 134 (426)
T KOG0679|consen 55 KGYYVDENAIHVPRPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLN 134 (426)
T ss_pred cceEeechhccCCCCCCeeccchhcCCcccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcC
Confidence 45799999988665 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCce----------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHHh
Q psy2592 92 EGTI----------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 92 vpsl----------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~K 154 (217)
||++ |++|||+| +..| +|+||+||+++++++. ..+||..|+..+..++..
T Consensus 135 vPAf~L~k~~v~~AFA~GrstalVvDiG------a~~~-------svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~ 201 (426)
T KOG0679|consen 135 VPAFYLAKTAVCTAFANGRSTALVVDIG------ATHT-------SVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEP 201 (426)
T ss_pred CceEEEechHHHHHHhcCCCceEEEEec------CCCc-------eeeeeecceEeeeeeEecccchHHHHHHHHHHHhh
Confidence 9997 69999999 9988 9999999999999999 999999999999999988
Q ss_pred hCcc
Q psy2592 155 LGFA 158 (217)
Q Consensus 155 ~Gfa 158 (217)
.++.
T Consensus 202 ~~ie 205 (426)
T KOG0679|consen 202 KNIE 205 (426)
T ss_pred cCcc
Confidence 7653
No 7
>PTZ00004 actin-2; Provisional
Probab=99.96 E-value=2.3e-29 Score=229.28 Aligned_cols=130 Identities=31% Similarity=0.497 Sum_probs=121.6
Q ss_pred CCceeeCcccccCCC-----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhcc
Q psy2592 17 GYERFLGPEIFFHPE-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLT 91 (217)
Q Consensus 17 ~~~~~vG~ea~~~~~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~ 91 (217)
.+++++|+++...+. +|+++|+|.|||++|.+|+|+|.++|+++|+++|||+|||+++++..|++++|+|||+|+
T Consensus 50 ~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~ 129 (378)
T PTZ00004 50 EKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHN 129 (378)
T ss_pred CCceEECchhhcccccceEcccCcCCEEcCHHHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcC
Confidence 356899999876543 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCce----------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHHh
Q psy2592 92 EGTI----------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 92 vpsl----------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~K 154 (217)
+|++ +|+|||+| ++.| +|+||++|+++.++++ +++||+++|+||.+++.+
T Consensus 130 ~~~~~~~~~~~ls~ya~g~~tglVVDiG------~~~t-------~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~ 196 (378)
T PTZ00004 130 VPAMYVAIQAVLSLYASGRTTGIVLDSG------DGVS-------HTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHE 196 (378)
T ss_pred CceEEeeccHHHHHHhcCCceEEEEECC------CCcE-------EEEEEECCEEeecceeeecccHHHHHHHHHHHHHh
Confidence 9986 69999999 9999 9999999999999999 999999999999999998
Q ss_pred hCccC
Q psy2592 155 LGFAA 159 (217)
Q Consensus 155 ~Gfag 159 (217)
.++..
T Consensus 197 ~~~~~ 201 (378)
T PTZ00004 197 RGTTF 201 (378)
T ss_pred cCCCC
Confidence 88754
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.96 E-value=2.6e-29 Score=231.22 Aligned_cols=129 Identities=42% Similarity=0.772 Sum_probs=120.2
Q ss_pred CceeeCcccccCCC-----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 18 YERFLGPEIFFHPE-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 18 ~~~~vG~ea~~~~~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
+++++|+++...+. +||++|+|.|||++|.+|+|+|++.|+++|+++|+|+|||+++|+.+|++++|+|||+|++
T Consensus 52 ~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~ 131 (414)
T PTZ00280 52 LDFYIGDEALAASKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNV 131 (414)
T ss_pred CCEEEcchhhhCcCCcEEecCccCCEeCCHHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCC
Confidence 36899999877654 9999999999999999999999899999999999999999999999999999999999999
Q ss_pred Cce--------------------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHH
Q psy2592 93 GTI--------------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLT 145 (217)
Q Consensus 93 psl--------------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt 145 (217)
|++ +|+|||+| ++.| +++||++|+++.++++ +++||+++|
T Consensus 132 p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG------~~~T-------~i~PV~~G~~l~~~~~~~~~GG~~lt 198 (414)
T PTZ00280 132 KGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSG------DGVT-------HVIPVVDGYVIGSSIKHIPLAGRDIT 198 (414)
T ss_pred CeEEEecCHHHhHhhhcccccccccCCceeEEEEECC------CCce-------EEEEEECCEEcccceEEecCcHHHHH
Confidence 875 37999999 9999 9999999999999999 999999999
Q ss_pred HHHHHHHHhhCccC
Q psy2592 146 RLAYRRYTKLGFAA 159 (217)
Q Consensus 146 ~~L~s~l~K~Gfag 159 (217)
+||.+++.+.++..
T Consensus 199 ~~L~~lL~~~~~~~ 212 (414)
T PTZ00280 199 NFIQQMLRERGEPI 212 (414)
T ss_pred HHHHHHHHHcCCCC
Confidence 99999998887643
No 9
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.93 E-value=2.4e-26 Score=213.38 Aligned_cols=132 Identities=29% Similarity=0.524 Sum_probs=122.0
Q ss_pred CCceeeCcccccCCC-------ccccCCccCCHHHHHHHHHHHHhh--hcCCCCCCCeEEEecCCCCChhhhhhhhhhhh
Q psy2592 17 GYERFLGPEIFFHPE-------YPVRHGLVEDWDLMERFFEQCIFK--YLRAEPEDHYFLLTEPPLNTPENREYTAGIYL 87 (217)
Q Consensus 17 ~~~~~vG~ea~~~~~-------~Pi~~G~I~dwd~~e~iw~~~f~~--~L~v~p~d~pvlltEp~~~~~~~Rek~~EilF 87 (217)
+++.++|+++...++ +|+++|.|.|||+||.+|+|+|.+ .+..++.+||+++|||++|++++|++++|++|
T Consensus 51 ~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~f 130 (444)
T COG5277 51 EKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLF 130 (444)
T ss_pred ccccccCchhhhccCCccceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHH
Confidence 467899999876543 999999999999999999999998 68889999999999999999999999999999
Q ss_pred hhccCCce------------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHH
Q psy2592 88 RVLTEGTI------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLA 148 (217)
Q Consensus 88 E~f~vpsl------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L 148 (217)
|+|++|++ +|+|||+| ++.| ||+||+||..+++++. +++||+++|.||
T Consensus 131 E~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G------~~~t-------~v~PV~DG~~l~~a~~ri~~gG~~it~~l 197 (444)
T COG5277 131 ETLNVPALYLAIQAVLSLYASGSSDETGLVIDSG------DSVT-------HVIPVVDGIVLPKAVKRIDIGGRDITDYL 197 (444)
T ss_pred HhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcC------CCce-------eeEeeeccccccccceeeecCcHHHHHHH
Confidence 99999986 69999999 9999 9999999999999999 999999999999
Q ss_pred HHHHHh-----hCccCCC
Q psy2592 149 YRRYTK-----LGFAANK 161 (217)
Q Consensus 149 ~s~l~K-----~Gfag~~ 161 (217)
+.++.. .++....
T Consensus 198 ~~lL~~~~~~~~~~~l~~ 215 (444)
T COG5277 198 KKLLREKYPPSRGYNLKS 215 (444)
T ss_pred HHHHhhcccccCCccccc
Confidence 999998 6666554
No 10
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.93 E-value=2.9e-26 Score=208.13 Aligned_cols=128 Identities=23% Similarity=0.386 Sum_probs=109.9
Q ss_pred ceeeCcccccCCC-----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 19 ERFLGPEIFFHPE-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 19 ~~~vG~ea~~~~~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
++++|+++..... +|+++|.|.|||.+|.+|+|+|.+.|+++|+++|||++||+++++..|++++|+|||+|++|
T Consensus 45 ~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~ 124 (393)
T PF00022_consen 45 DYYVGDEALSPRSNLELRSPIENGVIVDWDALEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVP 124 (393)
T ss_dssp SCEETHHHHHTGTGEEEEESEETTEESSHHHHHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--S
T ss_pred eEEeecccccchhheeeeeeccccccccccccccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccc
Confidence 6799998655322 99999999999999999999999889999999999999999999999999999999999999
Q ss_pred ce----------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHHhhC
Q psy2592 94 TI----------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYTKLG 156 (217)
Q Consensus 94 sl----------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~K~G 156 (217)
++ +|+|||+| ++.| +|+||++|++++++++ +++||.++|+||.+++.+.+
T Consensus 125 ~v~~~~~~~~a~~~~g~~tglVVD~G------~~~t-------~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~ 191 (393)
T PF00022_consen 125 SVYFIPSPLLALYASGRTTGLVVDIG------YSST-------SVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERN 191 (393)
T ss_dssp EEEEEEHHHHHHHHTTBSSEEEEEES------SS-E-------EEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-
T ss_pred eeeeeecccccccccccccccccccc------eeee-------eeeeeeeccccccccccccccHHHHHHHHHHHHHhhc
Confidence 97 69999999 9999 9999999999999999 99999999999999999865
Q ss_pred ccC
Q psy2592 157 FAA 159 (217)
Q Consensus 157 fag 159 (217)
...
T Consensus 192 ~~~ 194 (393)
T PF00022_consen 192 IQI 194 (393)
T ss_dssp SS-
T ss_pred ccc
Confidence 543
No 11
>KOG0678|consensus
Probab=99.93 E-value=5.2e-26 Score=200.51 Aligned_cols=127 Identities=48% Similarity=0.779 Sum_probs=117.9
Q ss_pred CceeeCcccccCCC----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 18 YERFLGPEIFFHPE----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 18 ~~~~vG~ea~~~~~----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
-++|+|++|+.... +|+++|.+.|||.||++|+..+.+.|..+|+||-.||||||+|++++||.++|||||.||+|
T Consensus 57 ldf~ig~eal~~~~ysl~ypiRhg~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvp 136 (415)
T KOG0678|consen 57 LDFFIGDEALDATTYSLKYPIRHGQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVP 136 (415)
T ss_pred cceecccHHHhhcccccccceeccccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCc
Confidence 46999999987432 99999999999999999999998999999999999999999999999999999999999998
Q ss_pred ce------------------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHH
Q psy2592 94 TI------------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLA 148 (217)
Q Consensus 94 sl------------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L 148 (217)
.+ +|+|+|+| +++| |++||.+|+++-++++ ++++|+++|-..
T Consensus 137 glyiAVqavLALaaswts~~v~er~ltG~VidsG------dgvT-------hvipvaEgyVigScik~iPiagrdiT~fi 203 (415)
T KOG0678|consen 137 GLYIAVQAVLALAASWTSRQVGERFLTGIVIDSG------DGVT-------HVIPVAEGYVIGSCIKHIPIAGRDITYFI 203 (415)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecC------CCee-------EEEEeecceEEeeeeccccccCCchhHHH
Confidence 64 79999999 9999 9999999999999999 999999999888
Q ss_pred HHHHHhhCc
Q psy2592 149 YRRYTKLGF 157 (217)
Q Consensus 149 ~s~l~K~Gf 157 (217)
++++...+-
T Consensus 204 Q~llRer~~ 212 (415)
T KOG0678|consen 204 QQLLREREV 212 (415)
T ss_pred HHHhhCCCC
Confidence 888865543
No 12
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.92 E-value=2.9e-25 Score=200.79 Aligned_cols=127 Identities=34% Similarity=0.568 Sum_probs=117.9
Q ss_pred ceeeCcccccCCC-----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 19 ERFLGPEIFFHPE-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 19 ~~~vG~ea~~~~~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
.+++|+++...+. +|+++|+|.|||++|.+|+|+|.+.|++.|+++|+++++|+++++..|++++|++||.|++|
T Consensus 46 ~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~ 125 (373)
T smart00268 46 DTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFP 125 (373)
T ss_pred ceEecchhhhcCCCceecCCCcCCEEeCHHHHHHHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCC
Confidence 6799999865442 99999999999999999999998889999999999999999999999999999999999999
Q ss_pred ce----------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHHhhC
Q psy2592 94 TI----------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYTKLG 156 (217)
Q Consensus 94 sl----------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~K~G 156 (217)
++ +|+|||+| ++.| +++||++|+++.++++ +++||.++|++|.+++.+.+
T Consensus 126 ~v~~~~~~~~a~~~~g~~~~lVVDiG------~~~t-------~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~ 192 (373)
T smart00268 126 ALYIAIQAVLSLYASGRTTGLVIDSG------DGVT-------HVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERG 192 (373)
T ss_pred eEEEeccHHHHHHhCCCCEEEEEecC------CCcc-------eEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcC
Confidence 87 69999999 9999 9999999999999999 99999999999999988754
Q ss_pred cc
Q psy2592 157 FA 158 (217)
Q Consensus 157 fa 158 (217)
..
T Consensus 193 ~~ 194 (373)
T smart00268 193 YQ 194 (373)
T ss_pred CC
Confidence 43
No 13
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.92 E-value=1.1e-24 Score=196.97 Aligned_cols=129 Identities=34% Similarity=0.572 Sum_probs=120.0
Q ss_pred CCceeeCcccccCCC------ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhc
Q psy2592 17 GYERFLGPEIFFHPE------YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVL 90 (217)
Q Consensus 17 ~~~~~vG~ea~~~~~------~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f 90 (217)
.+.+++|+++..... +|+++|+|.|||+++.+|+|+|.+.|..+++++|+++++|+++++..|++++|+|||.|
T Consensus 43 ~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~ 122 (371)
T cd00012 43 DKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETF 122 (371)
T ss_pred CCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccC
Confidence 367899999876542 99999999999999999999998889999999999999999999999999999999999
Q ss_pred cCCce----------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHH
Q psy2592 91 TEGTI----------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYT 153 (217)
Q Consensus 91 ~vpsl----------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~ 153 (217)
++|++ +|+|||+| ++.| +|+||++|+++++++. +++||+++|++|.+.+.
T Consensus 123 ~~~~v~~~~~~~~a~~~~g~~~~lVVDiG------~~~t-------~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~ 189 (371)
T cd00012 123 NVPALYVAIQAVLSLYASGRTTGLVVDSG------DGVT-------HVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLR 189 (371)
T ss_pred CCCEEEEechHHHHHHhcCCCeEEEEECC------CCee-------EEEEEECCEEchhhheeccccHHHHHHHHHHHHH
Confidence 99987 69999999 9999 9999999999999999 99999999999999998
Q ss_pred hhCcc
Q psy2592 154 KLGFA 158 (217)
Q Consensus 154 K~Gfa 158 (217)
+.++.
T Consensus 190 ~~~~~ 194 (371)
T cd00012 190 ERGYE 194 (371)
T ss_pred hcCCC
Confidence 87753
No 14
>KOG0681|consensus
Probab=99.86 E-value=8.1e-22 Score=182.85 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=108.5
Q ss_pred eeeCcccccC------CCccccCCccCCHHHHHHHHHHHHhhhcCCCC--CCCeEEEecCCCCChhhhhhhhhhhhhhcc
Q psy2592 20 RFLGPEIFFH------PEYPVRHGLVEDWDLMERFFEQCIFKYLRAEP--EDHYFLLTEPPLNTPENREYTAGIYLRVLT 91 (217)
Q Consensus 20 ~~vG~ea~~~------~~~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p--~d~pvlltEp~~~~~~~Rek~~EilFE~f~ 91 (217)
.+||++.... .+.|+++.+|+||+.||.|++|+| .+|++++ -+|||++||+..||...|++|+|+|||++|
T Consensus 66 t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~Yg 144 (645)
T KOG0681|consen 66 TLVGNDILNFQGVRSSPRSPFDRNVVTNWELMEQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYG 144 (645)
T ss_pred ccccchhhhhhhhhccCCCCCcCCccccHHHHHHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcC
Confidence 3566655432 229999999999999999999999 6899998 489999999999999999999999999999
Q ss_pred CCce--------------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHH
Q psy2592 92 EGTI--------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYR 150 (217)
Q Consensus 92 vpsl--------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s 150 (217)
+|++ +|+||++| ++.| +|+||.||.++...++ +++||...+.||.+
T Consensus 145 vP~V~yGIDslfS~~hN~~~~~~~~~liis~g------~~~T-------~vipvldG~~il~~~kRiN~GG~qa~dYL~~ 211 (645)
T KOG0681|consen 145 VPKVAYGIDSLFSFYHNYGKSSNKSGLIISMG------HSAT-------HVIPVLDGRLILKDVKRINWGGYQAGDYLSR 211 (645)
T ss_pred CcceeechhhHHHHhhccCcccCcceEEEecC------CCcc-------eeEEEecCchhhhcceeeccCcchHHHHHHH
Confidence 9987 49999999 9999 9999999999999999 99999999999988
Q ss_pred HHH
Q psy2592 151 RYT 153 (217)
Q Consensus 151 ~l~ 153 (217)
++.
T Consensus 212 Lmq 214 (645)
T KOG0681|consen 212 LMQ 214 (645)
T ss_pred HHh
Confidence 774
No 15
>KOG0680|consensus
Probab=99.84 E-value=4e-21 Score=169.41 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=120.3
Q ss_pred cCCCceeeCcccccCCC-------ccccCCccCCHHHHHHHHHHHHhhh-cCCCCCCCeEEEecCCCCChhhhhhhhhhh
Q psy2592 15 DVGYERFLGPEIFFHPE-------YPVRHGLVEDWDLMERFFEQCIFKY-LRAEPEDHYFLLTEPPLNTPENREYTAGIY 86 (217)
Q Consensus 15 ~~~~~~~vG~ea~~~~~-------~Pi~~G~I~dwd~~e~iw~~~f~~~-L~v~p~d~pvlltEp~~~~~~~Rek~~Eil 86 (217)
.+.++.|+|++...+++ +|+++|.++|||....+|+|+|.+. ++++.+++.+++|||.++-++..+.+.|++
T Consensus 37 ~~~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eil 116 (400)
T KOG0680|consen 37 FGRRRSFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEIL 116 (400)
T ss_pred cccchhhhhhhhhhccCccceEEeehhhcceeEeehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHH
Confidence 45567899999888765 9999999999999999999999642 346678999999999999999999999999
Q ss_pred hhhccCCce---------------------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-cc
Q psy2592 87 LRVLTEGTI---------------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-AD 138 (217)
Q Consensus 87 FE~f~vpsl---------------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~ 138 (217)
||.|++.++ |++|||+| +++| ||+|+..|.+..++++ +|
T Consensus 117 FEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsG------ysfT-------hIip~v~g~~~~qaV~RiD 183 (400)
T KOG0680|consen 117 FEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSG------YSFT-------HIIPVVKGIPYYQAVKRID 183 (400)
T ss_pred HHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCC------CceE-------EEehhhcCcchhhceEEee
Confidence 999999654 79999999 9999 9999999999999999 99
Q ss_pred CccHHHHHHHHHHHHhhCccCCC
Q psy2592 139 ALPTNLTRLAYRRYTKLGFAANK 161 (217)
Q Consensus 139 ~gG~~lt~~L~s~l~K~Gfag~~ 161 (217)
+||+.||++|...+.-+.+...+
T Consensus 184 vGGK~LTn~LKE~iSyR~lNvmd 206 (400)
T KOG0680|consen 184 VGGKALTNLLKETISYRHLNVMD 206 (400)
T ss_pred cchHHHHHHHHHHhhhhhhcccc
Confidence 99999999999998887776544
No 16
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.67 E-value=2.9e-16 Score=140.02 Aligned_cols=128 Identities=11% Similarity=0.050 Sum_probs=105.5
Q ss_pred CeeecCC----CceeeCcccccCC----C-----ccccCCccCCHHHHHHHHHHHHhhhcCCCC-CCCeEEEecCCCCCh
Q psy2592 11 PFAVDVG----YERFLGPEIFFHP----E-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEP-EDHYFLLTEPPLNTP 76 (217)
Q Consensus 11 ~~~~~~~----~~~~vG~ea~~~~----~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p-~d~pvlltEp~~~~~ 76 (217)
|.++.-. +.++||++|.... . +|+++|.|.|||.++.+|+|+|.+.+...+ ..+++++|.|+..+.
T Consensus 34 ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~ 113 (335)
T PRK13930 34 PSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITE 113 (335)
T ss_pred CCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCH
Confidence 7777532 4579999987542 1 999999999999999999999955444334 368899999999998
Q ss_pred hhhhhhhhhhhhhccCCce---------------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCcc
Q psy2592 77 ENREYTAGIYLRVLTEGTI---------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAY 135 (217)
Q Consensus 77 ~~Rek~~EilFE~f~vpsl---------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~ 135 (217)
..|+.+.+ +||.++++.+ .++|||+| ++.| .++|+++|.++. .
T Consensus 114 ~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG------~gtt-------dvs~v~~g~~~~--~ 177 (335)
T PRK13930 114 VERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIG------GGTT-------EVAVISLGGIVY--S 177 (335)
T ss_pred HHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeC------CCeE-------EEEEEEeCCEEe--e
Confidence 88887777 7999999765 36999999 9999 999999999874 3
Q ss_pred c-ccCccHHHHHHHHHHHHh
Q psy2592 136 K-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 136 ~-~~~gG~~lt~~L~s~l~K 154 (217)
. .++||.++|++|.+.+.+
T Consensus 178 ~~~~lGG~~id~~l~~~l~~ 197 (335)
T PRK13930 178 ESIRVAGDEMDEAIVQYVRR 197 (335)
T ss_pred cCcCchhHHHHHHHHHHHHH
Confidence 5 899999999999988754
No 17
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.64 E-value=1.3e-15 Score=136.87 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=108.8
Q ss_pred CccCCCeeecCC--C--ceeeCcccccCC----C-----ccccCCccCCHHHHHHHHHHHHh---hhcCCCCCCCeEEEe
Q psy2592 6 QITKQPFAVDVG--Y--ERFLGPEIFFHP----E-----YPVRHGLVEDWDLMERFFEQCIF---KYLRAEPEDHYFLLT 69 (217)
Q Consensus 6 ~~~~~~~~~~~~--~--~~~vG~ea~~~~----~-----~Pi~~G~I~dwd~~e~iw~~~f~---~~L~v~p~d~pvllt 69 (217)
.+...|-++.-. . -++||++|.... . +|+++|.|.|||.++.+|+|++. +.|+..++++++++|
T Consensus 25 ~~~~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvit 104 (335)
T PRK13929 25 IILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVC 104 (335)
T ss_pred EEecCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEE
Confidence 355567777543 2 268999997643 1 99999999999999999999997 357777777899999
Q ss_pred cCCCCChhhhhhhhhhhhhhccCCce---------------------eEEEeecCcccccccccccCCCCCcceEEeEec
Q psy2592 70 EPPLNTPENREYTAGIYLRVLTEGTI---------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQES 128 (217)
Q Consensus 70 Ep~~~~~~~Rek~~EilFE~f~vpsl---------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G 128 (217)
.|++.+..+|+++.+ +||.++++.+ +++|||+| ++.| .++++..|
T Consensus 105 vP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG------~gtt-------~v~vi~~~ 170 (335)
T PRK13929 105 TPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIG------GGTT-------EVAIISFG 170 (335)
T ss_pred cCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeC------CCeE-------EEEEEEeC
Confidence 999999999999999 9999999764 47899999 9999 99999444
Q ss_pred ccCCCccc-ccCccHHHHHHHHHHHHh
Q psy2592 129 NPRPSAYK-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 129 ~~~~~~~~-~~~gG~~lt~~L~s~l~K 154 (217)
..+ ... +++||.++|++|.+.+.+
T Consensus 171 ~~~--~~~~~~~GG~~id~~l~~~l~~ 195 (335)
T PRK13929 171 GVV--SCHSIRIGGDQLDEDIVSFVRK 195 (335)
T ss_pred CEE--EecCcCCHHHHHHHHHHHHHHH
Confidence 433 234 789999999999888754
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.59 E-value=3.8e-15 Score=133.10 Aligned_cols=127 Identities=11% Similarity=0.046 Sum_probs=101.1
Q ss_pred CeeecCC----CceeeCcccccCC----C-----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChh
Q psy2592 11 PFAVDVG----YERFLGPEIFFHP----E-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPE 77 (217)
Q Consensus 11 ~~~~~~~----~~~~vG~ea~~~~----~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~ 77 (217)
|.++.-. +.+++|++|.... . +|+++|.|.|||.++.+|+|+|.+.++. +.++|.+++..|.+.+.
T Consensus 31 ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~ 109 (334)
T PRK13927 31 PSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLKYFIKKVHKN-FRPSPRVVICVPSGITE 109 (334)
T ss_pred CCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCH
Confidence 6555553 2468999997542 2 9999999999999999999999877777 66675444444577788
Q ss_pred hhhhhhhhhhhhccCCce---------------------eEEEeecCcccccccccccCCCCCcceEEe-EecccCCCcc
Q psy2592 78 NREYTAGIYLRVLTEGTI---------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSV-QESNPRPSAY 135 (217)
Q Consensus 78 ~Rek~~EilFE~f~vpsl---------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv-~~G~~~~~~~ 135 (217)
.++++++.+||.++++.+ .++|+|+| ++.| .++++ ++|....++
T Consensus 110 ~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiG------ggtt-------dvs~v~~~~~~~~~~- 175 (334)
T PRK13927 110 VERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIG------GGTT-------EVAVISLGGIVYSKS- 175 (334)
T ss_pred HHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeC------CCeE-------EEEEEecCCeEeeCC-
Confidence 888999999999999764 26899999 9999 99998 666664433
Q ss_pred cccCccHHHHHHHHHHHH
Q psy2592 136 KADALPTNLTRLAYRRYT 153 (217)
Q Consensus 136 ~~~~gG~~lt~~L~s~l~ 153 (217)
+++||.++|++|.+.+.
T Consensus 176 -~~lGG~~id~~l~~~l~ 192 (334)
T PRK13927 176 -VRVGGDKFDEAIINYVR 192 (334)
T ss_pred -cCChHHHHHHHHHHHHH
Confidence 68999999999998775
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.59 E-value=6.3e-15 Score=131.92 Aligned_cols=119 Identities=10% Similarity=0.059 Sum_probs=97.6
Q ss_pred eeeCcccccC--C--C-----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCC-eEEEecCCCCChhhhhhhhhhhhhh
Q psy2592 20 RFLGPEIFFH--P--E-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDH-YFLLTEPPLNTPENREYTAGIYLRV 89 (217)
Q Consensus 20 ~~vG~ea~~~--~--~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~-pvlltEp~~~~~~~Rek~~EilFE~ 89 (217)
++||++|... + . +||++|+|.|||.++.+|+|+|.+.++.....+ ++++|.|+.++...|+. ++.+||.
T Consensus 45 ~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ 123 (333)
T TIGR00904 45 LAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALS 123 (333)
T ss_pred EEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHH
Confidence 7899998765 2 2 999999999999999999999987665433233 69999999999999988 5668999
Q ss_pred ccCCce---------------------eEEEeecCcccccccccccCCCCCcceEEe-EecccCCCcccccCccHHHHHH
Q psy2592 90 LTEGTI---------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSV-QESNPRPSAYKADALPTNLTRL 147 (217)
Q Consensus 90 f~vpsl---------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv-~~G~~~~~~~~~~~gG~~lt~~ 147 (217)
++++.+ .++|||+| ++.| .++++ ++|....+. +++||.++|++
T Consensus 124 ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG------~gtt-------dvs~v~~~~~~~~~~--~~lGG~did~~ 188 (333)
T TIGR00904 124 AGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIG------GGTT-------EVAVISLGGIVVSRS--IRVGGDEFDEA 188 (333)
T ss_pred cCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcC------CCeE-------EEEEEEeCCEEecCC--ccchHHHHHHH
Confidence 999754 37899999 9999 99999 666655433 58999999999
Q ss_pred HHHHHHh
Q psy2592 148 AYRRYTK 154 (217)
Q Consensus 148 L~s~l~K 154 (217)
|.+.+.+
T Consensus 189 l~~~l~~ 195 (333)
T TIGR00904 189 IINYIRR 195 (333)
T ss_pred HHHHHHH
Confidence 9887753
No 20
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.38 E-value=2.4e-12 Score=115.44 Aligned_cols=128 Identities=12% Similarity=0.090 Sum_probs=100.1
Q ss_pred CCeeecCCC----ceeeCcccccCC-----C----ccccCCccCCHHHHHHHHHHHHhhhcCCC-CCCCe-EEEecCCCC
Q psy2592 10 QPFAVDVGY----ERFLGPEIFFHP-----E----YPVRHGLVEDWDLMERFFEQCIFKYLRAE-PEDHY-FLLTEPPLN 74 (217)
Q Consensus 10 ~~~~~~~~~----~~~vG~ea~~~~-----~----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~-p~d~p-vlltEp~~~ 74 (217)
.|-++.-.+ -+++|++|.... . +|+++|+|.|||.++.+|+|++. ++... +.++| +++|. |.+
T Consensus 28 ~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~~~~~-~~~~~~~~~~p~~vitv-P~~ 105 (336)
T PRK13928 28 EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLKYFIN-KACGKRFFSKPRIMICI-PTG 105 (336)
T ss_pred cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHHHHHH-HHhccCCCCCCeEEEEe-CCC
Confidence 355554442 258999987542 1 89999999999999999999994 44433 56777 88888 555
Q ss_pred ChhhhhhhhhhhhhhccCCce---------------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCC
Q psy2592 75 TPENREYTAGIYLRVLTEGTI---------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPS 133 (217)
Q Consensus 75 ~~~~Rek~~EilFE~f~vpsl---------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~ 133 (217)
....+++.++.+||.++++.+ .++|+|+| ++.| .+.++..|..+..
T Consensus 106 ~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG------ggtt-------dvsvv~~g~~~~~ 172 (336)
T PRK13928 106 ITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG------GGTT-------DIAVLSLGGIVTS 172 (336)
T ss_pred CCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC------CCeE-------EEEEEEeCCEEEe
Confidence 667788889999999999764 37899999 9999 9999999876543
Q ss_pred cccccCccHHHHHHHHHHHH
Q psy2592 134 AYKADALPTNLTRLAYRRYT 153 (217)
Q Consensus 134 ~~~~~~gG~~lt~~L~s~l~ 153 (217)
. .+++||.++|+.|...+.
T Consensus 173 ~-~~~lGG~did~~i~~~l~ 191 (336)
T PRK13928 173 S-SIKVAGDKFDEAIIRYIR 191 (336)
T ss_pred C-CcCCHHHHHHHHHHHHHH
Confidence 1 289999999999988764
No 21
>KOG0797|consensus
Probab=99.28 E-value=1.8e-11 Score=113.85 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=108.9
Q ss_pred eeCcccccCCC----ccccCCccCC----------HHHHHHHHHHHHhhhcCCCCC---CCeEEEecCCCCChhhhhhhh
Q psy2592 21 FLGPEIFFHPE----YPVRHGLVED----------WDLMERFFEQCIFKYLRAEPE---DHYFLLTEPPLNTPENREYTA 83 (217)
Q Consensus 21 ~vG~ea~~~~~----~Pi~~G~I~d----------wd~~e~iw~~~f~~~L~v~p~---d~pvlltEp~~~~~~~Rek~~ 83 (217)
.+|+++...+. +||++|...- .+++++||+|++.+.|++.++ .+.+++.-|-.--+..-|++.
T Consensus 168 ~~~ee~n~i~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl 247 (618)
T KOG0797|consen 168 IFGEEANKISPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFL 247 (618)
T ss_pred HhhhhhhcCCcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHH
Confidence 45555555444 9999996543 578899999999999999884 678888888777788888888
Q ss_pred hhhhhhccCCce----------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHH
Q psy2592 84 GIYLRVLTEGTI----------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTR 146 (217)
Q Consensus 84 EilFE~f~vpsl----------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~ 146 (217)
.++|-.++|.+. +++|||+| +.-| +|..|-||..++++-. +++||.|+|+
T Consensus 248 ~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiG------AQkT-------sIaCVEdGvs~~ntri~L~YGGdDitr 314 (618)
T KOG0797|consen 248 TILLGELGFNSAVVHQESLAATFGAGLSSACVVDIG------AQKT-------SIACVEDGVSLPNTRIILPYGGDDITR 314 (618)
T ss_pred HHHHHHhccceEEEEhhhhHHHhcCCccceeEEEcc------Ccce-------eEEEeecCccccCceEEeccCCchHHH
Confidence 899999998764 68899999 8888 9999999999999888 9999999999
Q ss_pred HHHHHHHhhCccCCC
Q psy2592 147 LAYRRYTKLGFAANK 161 (217)
Q Consensus 147 ~L~s~l~K~Gfag~~ 161 (217)
.|+-++.++||...+
T Consensus 315 ~f~~ll~rs~FPy~d 329 (618)
T KOG0797|consen 315 CFLWLLRRSGFPYQD 329 (618)
T ss_pred HHHHHHHhcCCCccc
Confidence 999999999997655
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=98.30 E-value=3.7e-06 Score=75.91 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=87.5
Q ss_pred CCeeecCC----CceeeCcccccCCC---------ccccCCccCCHHHHHHHHHHHHhhhcCC-CCCCCeEEEecCCCCC
Q psy2592 10 QPFAVDVG----YERFLGPEIFFHPE---------YPVRHGLVEDWDLMERFFEQCIFKYLRA-EPEDHYFLLTEPPLNT 75 (217)
Q Consensus 10 ~~~~~~~~----~~~~vG~ea~~~~~---------~Pi~~G~I~dwd~~e~iw~~~f~~~L~v-~p~d~pvlltEp~~~~ 75 (217)
.|.++.-. +-..+|++|...-. +|+++|+|.|.|.++.++.|.+.+.++- ......++++-|.-.+
T Consensus 26 epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T 105 (326)
T PF06723_consen 26 EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGIT 105 (326)
T ss_dssp EES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--
T ss_pred cCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCC
Confidence 45555322 44668999965321 9999999999999999999999766654 2345668999999999
Q ss_pred hhhhhhhhhhhhhhccCCce---------------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCc
Q psy2592 76 PENREYTAGIYLRVLTEGTI---------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSA 134 (217)
Q Consensus 76 ~~~Rek~~EilFE~f~vpsl---------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~ 134 (217)
...|+.+.+.+ ...++..+ -.+|||+| .+.| .+.=+..|-...
T Consensus 106 ~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG------~GtT-------diavislggiv~-- 169 (326)
T PF06723_consen 106 EVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIG------GGTT-------DIAVISLGGIVA-- 169 (326)
T ss_dssp HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-------SS-E-------EEEEEETTEEEE--
T ss_pred HHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEEC------CCeE-------EEEEEECCCEEE--
Confidence 99999999977 45676554 25799999 9988 666666665543
Q ss_pred cc-ccCccHHHHHHHHHHHHh
Q psy2592 135 YK-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 135 ~~-~~~gG~~lt~~L~s~l~K 154 (217)
.+ +.+||.++++-+.+.+.+
T Consensus 170 s~si~~gG~~~DeaI~~~ir~ 190 (326)
T PF06723_consen 170 SRSIRIGGDDIDEAIIRYIRE 190 (326)
T ss_dssp EEEES-SHHHHHHHHHHHHHH
T ss_pred EEEEEecCcchhHHHHHHHHH
Confidence 34 889999999999877654
No 23
>KOG0676|consensus
Probab=97.73 E-value=1e-05 Score=74.15 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=44.4
Q ss_pred HHHHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhc
Q psy2592 150 RRYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAK 206 (217)
Q Consensus 150 s~l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~ 206 (217)
|+++|+||+|++.|++++|++||++ ++...+.+...++.|||++|+.+|
T Consensus 16 sg~~KaGfag~~~P~~v~ps~vg~~--------~~~~~~~~~~~~~~~vg~~a~~~~ 64 (372)
T KOG0676|consen 16 SGFVKAGFAGDDAPRAVFPSIVGRP--------RHQGVMAGMTQKDTYVGDEAESKR 64 (372)
T ss_pred CceeecccCCCCCCceecceecccc--------ccccccccccccccccchhhhccc
Confidence 4678999999999999999999765 788888888999999999999888
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.64 E-value=0.00022 Score=61.47 Aligned_cols=103 Identities=12% Similarity=0.017 Sum_probs=75.6
Q ss_pred ccccCCccCCHHHHHHHHHHHHh---hhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCce-------------
Q psy2592 32 YPVRHGLVEDWDLMERFFEQCIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI------------- 95 (217)
Q Consensus 32 ~Pi~~G~I~dwd~~e~iw~~~f~---~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl------------- 95 (217)
.|+.+|.|.|.|.++.+++++.. ..++. .-..++++-|...+..+|+.+.+ .++.-++..+
T Consensus 29 ~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~--~~~~vvisVP~~~~~~~r~a~~~-a~~~aGl~~~~li~ep~Aaa~~~ 105 (239)
T TIGR02529 29 DVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI--ELTHAATAIPPGTIEGDPKVIVN-VIESAGIEVLHVLDEPTAAAAVL 105 (239)
T ss_pred ccccCCeEEEhHHHHHHHHHHHHHHHHHhCC--CcCcEEEEECCCCCcccHHHHHH-HHHHcCCceEEEeehHHHHHHHh
Confidence 99999999999999999999884 23332 23568899998888888876664 3444455322
Q ss_pred ---eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHH
Q psy2592 96 ---TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRY 152 (217)
Q Consensus 96 ---~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l 152 (217)
..+|+|+| .+.| .+.=+.+|.+.. .+ +++||.++|+.+.+.+
T Consensus 106 ~~~~~~vvDiG------ggtt-------~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~ 151 (239)
T TIGR02529 106 QIKNGAVVDVG------GGTT-------GISILKKGKVIY--SADEPTGGTHMSLVLAGAY 151 (239)
T ss_pred cCCCcEEEEeC------CCcE-------EEEEEECCeEEE--EEeeecchHHHHHHHHHHh
Confidence 25899999 8876 554456676553 45 8899999999886554
No 25
>KOG0677|consensus
Probab=97.27 E-value=7.4e-05 Score=65.59 Aligned_cols=53 Identities=28% Similarity=0.519 Sum_probs=40.0
Q ss_pred HHHhhCccCCCCCceeeeeeeeecccccccchhhhhc-ccC-CCCCcceecHHHHhhcC-Ccee
Q psy2592 151 RYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRL-TKG-VEDLDFFIGDEAFDAKG-YSVK 211 (217)
Q Consensus 151 ~l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~-~~g-~~~~d~~vG~ea~~~~~-~~~~ 211 (217)
++.|+||+++++|.++||++||||. .+.. ..| ..-+|.+||+||.+-|. ++++
T Consensus 14 GfVKcGyAg~NFP~~~FPs~VGRPi--------lR~~e~~g~~~iKD~mvGdeaselRs~L~i~ 69 (389)
T KOG0677|consen 14 GFVKCGYAGENFPTHIFPSIVGRPI--------LRAEEKVGNIEIKDLMVGDEASELRSLLDIN 69 (389)
T ss_pred ceEEeccccCCCcccccchhcCchh--------hhhhhhccCeehhhheccchHHHHHHHHhcC
Confidence 4569999999999999999998874 2221 222 33489999999999886 3554
No 26
>PTZ00452 actin; Provisional
Probab=96.98 E-value=0.0003 Score=64.48 Aligned_cols=53 Identities=21% Similarity=0.442 Sum_probs=39.1
Q ss_pred HHHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhcC-Ccee
Q psy2592 151 RYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKG-YSVK 211 (217)
Q Consensus 151 ~l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~~-~~~~ 211 (217)
..+|+||++++.|+.++|++||++ +....+.+...+++|+|++|.+.++ ++++
T Consensus 15 ~~~k~G~age~~P~~i~ps~vg~~--------~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~ 68 (375)
T PTZ00452 15 GYCKIGIAGDDAPTSCFPAIVGRS--------KQNDGIFSTFNKEYYVGEEAQAKRGVLAIK 68 (375)
T ss_pred CeEEEeeCCCCCcCEEecceeEEE--------CCccccccccccceEEChhhhccccCcEEc
Confidence 446999999999999999999876 3332222333567899999988776 4554
No 27
>PTZ00466 actin-like protein; Provisional
Probab=96.98 E-value=0.00032 Score=64.47 Aligned_cols=52 Identities=29% Similarity=0.598 Sum_probs=40.0
Q ss_pred HHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhcC-Ccee
Q psy2592 152 YTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKG-YSVK 211 (217)
Q Consensus 152 l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~~-~~~~ 211 (217)
.+|+||++++.|+.++|++||++ +.+..+.|...+++|||+++...++ +.++
T Consensus 23 ~~K~G~ag~~~P~~~~ps~vg~~--------k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~ 75 (380)
T PTZ00466 23 YIKAGFAGEDVPNLVFPSYVGRP--------KYKRVMAGAVEGNIFVGNKAEEYRGLLKVT 75 (380)
T ss_pred cEEEeeCCCCCCCEeccceeeee--------cCccccccCCCCCeEECchhhhhCcCceeC
Confidence 35999999999999999999876 4554444555568999999988776 3443
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=96.78 E-value=0.0079 Score=54.25 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=78.2
Q ss_pred ceeeCcccccCC----C-----ccccCCccCCHHHHHHHHHHHHhhhcCCC--CCCCeEEEecCCCCChhhhhhhhhhhh
Q psy2592 19 ERFLGPEIFFHP----E-----YPVRHGLVEDWDLMERFFEQCIFKYLRAE--PEDHYFLLTEPPLNTPENREYTAGIYL 87 (217)
Q Consensus 19 ~~~vG~ea~~~~----~-----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~--p~d~pvlltEp~~~~~~~Rek~~EilF 87 (217)
-..+|+||...- . +|+++|+|-|+|..|.++.|..++..+-. +..-.+++.-|.-.+.-.|+.+-|.+-
T Consensus 46 v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~ 125 (342)
T COG1077 46 VLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAE 125 (342)
T ss_pred EEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHH
Confidence 478899987532 1 99999999999999999999885543222 233347777787778777777666433
Q ss_pred ----------hhccCCce---------e-EEEeecCcccccccccccCCCCCcceEEeEecccCC-CcccccCccHHHHH
Q psy2592 88 ----------RVLTEGTI---------T-AKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRP-SAYKADALPTNLTR 146 (217)
Q Consensus 88 ----------E~f~vpsl---------~-glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~-~~~~~~~gG~~lt~ 146 (217)
|.--+.++ + ..|||+| .+.| -+.-+..|=... ++ +-+||..+++
T Consensus 126 ~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIG------gGTT-------evaVISlggiv~~~S--irv~GD~~De 190 (342)
T COG1077 126 SAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIG------GGTT-------EVAVISLGGIVSSSS--VRVGGDKMDE 190 (342)
T ss_pred hccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeC------CCce-------eEEEEEecCEEEEee--EEEecchhhH
Confidence 22211111 2 7799999 9888 666554443332 22 4578877766
Q ss_pred HHHHHHH
Q psy2592 147 LAYRRYT 153 (217)
Q Consensus 147 ~L~s~l~ 153 (217)
-+-.++.
T Consensus 191 ~Ii~yvr 197 (342)
T COG1077 191 AIIVYVR 197 (342)
T ss_pred HHHHHHH
Confidence 6554443
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.73 E-value=0.0099 Score=52.02 Aligned_cols=103 Identities=12% Similarity=-0.001 Sum_probs=73.4
Q ss_pred ccccCCccCCHHHHHHHHHHHHh---hhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCce-------------
Q psy2592 32 YPVRHGLVEDWDLMERFFEQCIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI------------- 95 (217)
Q Consensus 32 ~Pi~~G~I~dwd~~e~iw~~~f~---~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl------------- 95 (217)
.++++|.|.|+|.....++++.. +.++.. =..+.++-|......+|..+. -..+.-++.-.
T Consensus 56 ~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~ 132 (267)
T PRK15080 56 DVVRDGIVVDFIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVL 132 (267)
T ss_pred cccCCCEEeeHHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHh
Confidence 78999999999999999998874 234444 234566778776666666555 34455555321
Q ss_pred ---eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHH
Q psy2592 96 ---TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRY 152 (217)
Q Consensus 96 ---~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l 152 (217)
.++|||+| .+.| .+.=+.+|.+.. .. +++||.++|+.+.+.+
T Consensus 133 ~~~~~~vvDIG------ggtt-------~i~v~~~g~~~~--~~~~~~GG~~it~~Ia~~l 178 (267)
T PRK15080 133 GIDNGAVVDIG------GGTT-------GISILKDGKVVY--SADEPTGGTHMSLVLAGAY 178 (267)
T ss_pred CCCCcEEEEeC------CCcE-------EEEEEECCeEEE--EecccCchHHHHHHHHHHh
Confidence 36899999 9888 665566676653 35 8999999999987654
No 30
>PTZ00281 actin; Provisional
Probab=96.72 E-value=0.00066 Score=62.11 Aligned_cols=53 Identities=28% Similarity=0.519 Sum_probs=39.9
Q ss_pred HHHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhcC-Ccee
Q psy2592 151 RYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKG-YSVK 211 (217)
Q Consensus 151 ~l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~~-~~~~ 211 (217)
..+|+||++++.|+.++|++||++ +....+.+..+.++|+|+++...++ ++++
T Consensus 16 ~~~k~G~age~~P~~i~ps~vg~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 69 (376)
T PTZ00281 16 GMCKAGFAGDDAPRAVFPSIVGRP--------RHTGVMVGMGQKDSYVGDEAQSKRGILTLK 69 (376)
T ss_pred CeEEEeeCCCCCCCeeccccceee--------cCcccccCcccCCeEECchhhccccCcEEe
Confidence 345999999999999999999875 4443334444568899999987665 4554
No 31
>KOG0678|consensus
Probab=96.26 E-value=0.0022 Score=57.90 Aligned_cols=64 Identities=63% Similarity=1.010 Sum_probs=46.2
Q ss_pred HHHHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhcCCceeec
Q psy2592 150 RRYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKGYSVKTL 213 (217)
Q Consensus 150 s~l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~~~~~~~~ 213 (217)
..++|.||+|+..|++++|+++....-+.+++-.......+..+.|+|||+||++.-.++|++.
T Consensus 13 tgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~~~~ysl~yp 76 (415)
T KOG0678|consen 13 TGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALDATTYSLKYP 76 (415)
T ss_pred cceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHhhcccccccc
Confidence 3577999999999999999999875322223222223344666789999999999556787763
No 32
>PTZ00004 actin-2; Provisional
Probab=95.96 E-value=0.0034 Score=57.48 Aligned_cols=53 Identities=32% Similarity=0.609 Sum_probs=39.2
Q ss_pred HHHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhcC-Ccee
Q psy2592 151 RYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKG-YSVK 211 (217)
Q Consensus 151 ~l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~~-~~~~ 211 (217)
..+|+||++++.|+.++|+++|++ +.+..+.+...+++|+|+++...++ ++++
T Consensus 16 ~~~k~G~ag~~~P~~~~ps~v~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 69 (378)
T PTZ00004 16 GMVKAGFAGDDAPRCVFPSIVGRP--------KNPGIMVGMEEKDCYVGDEAQDKRGILTLK 69 (378)
T ss_pred CeEEEeeCCCCCCCEEccceeEEe--------cccccccCcCCCceEECchhhcccccceEc
Confidence 345999999999999999999876 3443333444567899999987665 3554
No 33
>PTZ00280 Actin-related protein 3; Provisional
Probab=95.43 E-value=0.0075 Score=55.79 Aligned_cols=53 Identities=51% Similarity=0.892 Sum_probs=37.4
Q ss_pred HHHhhCccCCCCCceeeeeeeeecccccccchhhhhcc---cCCCCCcceecHHHHhhcC-Ccee
Q psy2592 151 RYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLT---KGVEDLDFFIGDEAFDAKG-YSVK 211 (217)
Q Consensus 151 ~l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~---~g~~~~d~~vG~ea~~~~~-~~~~ 211 (217)
..+|+||++++.|+.++|++||++ +.+... .+....++++|++|...++ ++++
T Consensus 14 ~~~k~G~ag~~~P~~~~ps~v~~~--------~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~ 70 (414)
T PTZ00280 14 GYTKMGYAGNTEPTYIIPTLIADN--------SKQSRRRSKKGFEDLDFYIGDEALAASKSYTLT 70 (414)
T ss_pred CceEeeeCCCCCCCEEecceeEEe--------ccccccccccccccCCEEEcchhhhCcCCcEEe
Confidence 446999999999999999999876 232111 1222357899999988765 4543
No 34
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=95.03 E-value=0.0091 Score=56.20 Aligned_cols=52 Identities=27% Similarity=0.477 Sum_probs=41.9
Q ss_pred HHHHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhcCC
Q psy2592 150 RRYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKGY 208 (217)
Q Consensus 150 s~l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~~~ 208 (217)
|..+|+||++++.|++++|+++|++. .+.+.+.....++.|+|++++..++.
T Consensus 15 S~~~k~Gfag~~~P~~V~ps~~~~~~-------~~~~~~~~~~~~~~~v~ne~~~~~~~ 66 (444)
T COG5277 15 SGTTKAGFAGNDTPTTVFPSIVGRRR-------DEDSVMEDTEEKDTYVGNEAQNDRDN 66 (444)
T ss_pred CceEEeeecCCCCceeeccccccccc-------ccccccccccccccccCchhhhccCC
Confidence 45679999999999999999998762 24455556667899999999988764
No 35
>KOG0679|consensus
Probab=93.52 E-value=0.031 Score=51.44 Aligned_cols=55 Identities=22% Similarity=0.397 Sum_probs=37.1
Q ss_pred HHHHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhc--CCceeec
Q psy2592 150 RRYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAK--GYSVKTL 213 (217)
Q Consensus 150 s~l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~--~~~~~~~ 213 (217)
|..+++||+|+++|++++|+++|... +...- ....+.+|++.+|.... +++++++
T Consensus 20 S~~traGyaged~Pk~ilPS~~G~~t-------k~~~d--~~~~~~~y~~~~ai~~pr~gmEv~~~ 76 (426)
T KOG0679|consen 20 SHTTRAGYAGEDSPKAILPSVYGKVT-------KTDGD--AEDKKGYYVDENAIHVPRPGMEVKTP 76 (426)
T ss_pred CceEeccccCCCCccccccceeeeee-------cccCc--cccccceEeechhccCCCCCCeeccc
Confidence 44568999999999999999999531 11110 01123479999987733 5788775
No 36
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=92.55 E-value=0.68 Score=45.13 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHh---hhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCce---------------------eEE
Q psy2592 43 DLMERFFEQCIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI---------------------TAK 98 (217)
Q Consensus 43 d~~e~iw~~~f~---~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl---------------------~gl 98 (217)
+....++.++.. +.++.. -..+++|-|+..+..+|+.+.+. .+..|+..+ +-+
T Consensus 108 ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 184 (599)
T TIGR01991 108 EVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYA 184 (599)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEE
Confidence 444455555432 334432 34689999999999999887664 456665432 468
Q ss_pred EeecCcccccccccccCCCCCcceEEeEecccCCCcc-c-ccCccHHHHHHHHHHHHhh
Q psy2592 99 VLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAY-K-ADALPTNLTRLAYRRYTKL 155 (217)
Q Consensus 99 VvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~-~-~~~gG~~lt~~L~s~l~K~ 155 (217)
|+|+| .+.+ ..+++-+..|..---+. . ..+||.++++.|...+.+.
T Consensus 185 V~DlG------gGT~-----DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 185 VYDLG------GGTF-----DVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred EEEcC------CCeE-----EEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 99999 7765 33344444453322222 2 5899999999999988653
No 37
>PRK13410 molecular chaperone DnaK; Provisional
Probab=91.95 E-value=0.77 Score=45.46 Aligned_cols=79 Identities=13% Similarity=-0.020 Sum_probs=52.3
Q ss_pred CeEEEecCCCCChhhhhhhhhhhhhhccCCce---------------------eEEEeecCcccccccccccCCCCCcce
Q psy2592 64 HYFLLTEPPLNTPENREYTAGIYLRVLTEGTI---------------------TAKVLSSRNQREKEDRIGKSQPFRERT 122 (217)
Q Consensus 64 ~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl---------------------~glVvD~G~q~~~~~~~t~~~~~~~~v 122 (217)
..+++|-|+..+..+|+.+.+. .+.-|+..+ +-+|+|+| .+.+ ..++
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlG------gGT~-----Dvsv 203 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLG------GGTF-----DVSL 203 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECC------CCeE-----EEEE
Confidence 3589999999999999877553 344444321 46899999 7755 3344
Q ss_pred EEeEecccCCCcc-c-ccCccHHHHHHHHHHHHh
Q psy2592 123 LSVQESNPRPSAY-K-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 123 ~Pv~~G~~~~~~~-~-~~~gG~~lt~~L~s~l~K 154 (217)
+-+..|..--.+. . ..+||.++++.|...+.+
T Consensus 204 ~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~ 237 (668)
T PRK13410 204 LEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAE 237 (668)
T ss_pred EEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHH
Confidence 4454554322222 3 679999999988776643
No 38
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=91.42 E-value=0.94 Score=43.92 Aligned_cols=78 Identities=8% Similarity=-0.055 Sum_probs=51.3
Q ss_pred CeEEEecCCCCChhhhhhhhhhhhhhccCCc----------------------eeEEEeecCcccccccccccCCCCCcc
Q psy2592 64 HYFLLTEPPLNTPENREYTAGIYLRVLTEGT----------------------ITAKVLSSRNQREKEDRIGKSQPFRER 121 (217)
Q Consensus 64 ~pvlltEp~~~~~~~Rek~~EilFE~f~vps----------------------l~glVvD~G~q~~~~~~~t~~~~~~~~ 121 (217)
..+++|-|+..+..+|+.+.+. .+..|+.. -+-+|+|+| .+.+ ..+
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~G------ggt~-----dvs 198 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLG------GGTF-----DVS 198 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECC------CCeE-----EEE
Confidence 4588999999999999888763 33333321 146899999 7765 333
Q ss_pred eEEeEecccCCCcc-c-ccCccHHHHHHHHHHHH
Q psy2592 122 TLSVQESNPRPSAY-K-ADALPTNLTRLAYRRYT 153 (217)
Q Consensus 122 v~Pv~~G~~~~~~~-~-~~~gG~~lt~~L~s~l~ 153 (217)
++-+..|..---+. . ..+||.++++.|...+.
T Consensus 199 v~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~ 232 (595)
T TIGR02350 199 ILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLA 232 (595)
T ss_pred EEEecCCeEEEEEecCCcccCchhHHHHHHHHHH
Confidence 44444443322222 2 57999999999987664
No 39
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=91.15 E-value=1.1 Score=44.31 Aligned_cols=79 Identities=10% Similarity=-0.016 Sum_probs=54.3
Q ss_pred CeEEEecCCCCChhhhhhhhhhhhhhccCCce---------------------eEEEeecCcccccccccccCCCCCcce
Q psy2592 64 HYFLLTEPPLNTPENREYTAGIYLRVLTEGTI---------------------TAKVLSSRNQREKEDRIGKSQPFRERT 122 (217)
Q Consensus 64 ~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl---------------------~glVvD~G~q~~~~~~~t~~~~~~~~v 122 (217)
..+++|-|++.+..+|+.+.+ ..+.-|+..+ +-+|+|+| .+.+ ..++
T Consensus 175 ~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlG------gGT~-----DvSv 242 (663)
T PTZ00400 175 KQAVITVPAYFNDSQRQATKD-AGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLG------GGTF-----DISI 242 (663)
T ss_pred ceEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCC------CCeE-----EEEE
Confidence 468899999999999988865 3444454322 46799999 7765 3334
Q ss_pred EEeEecccCCCccc--ccCccHHHHHHHHHHHHh
Q psy2592 123 LSVQESNPRPSAYK--ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 123 ~Pv~~G~~~~~~~~--~~~gG~~lt~~L~s~l~K 154 (217)
+-+..|...-.+.. ..+||.++++.|...+.+
T Consensus 243 ~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 243 LEILGGVFEVKATNGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred EEecCCeeEEEecccCCCcCHHHHHHHHHHHHHH
Confidence 44445644333333 689999999999877653
No 40
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=90.96 E-value=0.11 Score=47.08 Aligned_cols=49 Identities=31% Similarity=0.654 Sum_probs=35.5
Q ss_pred HHHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhcC
Q psy2592 151 RYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKG 207 (217)
Q Consensus 151 ~l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~~ 207 (217)
..+|+||++++.|+.++|+++|++ +......+.....+++|++|...++
T Consensus 9 ~~~r~G~a~~~~p~~~~ps~v~~~--------~~~~~~~~~~~~~~~~G~~a~~~~~ 57 (371)
T cd00012 9 GTIKAGFAGEDAPRVVFPSCVGRP--------KHQSVMVGAGDKDYFVGEEALEKRG 57 (371)
T ss_pred CeEEEEeCCCCCCceEeeccceee--------cCcccccccCCCceEEchhhhhCCC
Confidence 346899999999999999999875 2222122333467899999987664
No 41
>PLN03184 chloroplast Hsp70; Provisional
Probab=90.75 E-value=1.2 Score=44.12 Aligned_cols=101 Identities=11% Similarity=0.030 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHh---hhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCce---------------------
Q psy2592 40 EDWDLMERFFEQCIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI--------------------- 95 (217)
Q Consensus 40 ~dwd~~e~iw~~~f~---~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl--------------------- 95 (217)
.-.+....++.++.. +.++. .-..+++|-|.+.+..+|+.+.+ ..+.-|+..+
T Consensus 148 speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~ 224 (673)
T PLN03184 148 AAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATKD-AGRIAGLEVLRIINEPTAASLAYGFEKKSNE 224 (673)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHH-HHHHCCCCeEEEeCcHHHHHHHhhcccCCCC
Confidence 334555666666553 23432 23568999999999999988765 3344444322
Q ss_pred eEEEeecCcccccccccccCCCCCcceEEeEecccCCCcc-c-ccCccHHHHHHHHHHHHh
Q psy2592 96 TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAY-K-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 96 ~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~-~-~~~gG~~lt~~L~s~l~K 154 (217)
+-+|+|+| .+.+ ..+++-+.+|..---+. . ..+||.++++.|.+.+.+
T Consensus 225 ~vlV~DlG------gGT~-----DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 225 TILVFDLG------GGTF-----DVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred EEEEEECC------CCeE-----EEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHH
Confidence 46799999 7765 33344444443221222 3 689999999999877653
No 42
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=90.53 E-value=1.3 Score=43.21 Aligned_cols=78 Identities=8% Similarity=-0.065 Sum_probs=51.6
Q ss_pred CeEEEecCCCCChhhhhhhhhhhhhhccCCc---------------------eeEEEeecCcccccccccccCCCCCcce
Q psy2592 64 HYFLLTEPPLNTPENREYTAGIYLRVLTEGT---------------------ITAKVLSSRNQREKEDRIGKSQPFRERT 122 (217)
Q Consensus 64 ~pvlltEp~~~~~~~Rek~~EilFE~f~vps---------------------l~glVvD~G~q~~~~~~~t~~~~~~~~v 122 (217)
..+++|-|+..+..+|+.+.+. .+..|+.. -+-+|+|+| .+.+ ..++
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~G------ggT~-----dvsv 201 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLG------GGTF-----DVSI 201 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECC------CCeE-----EEEE
Confidence 4589999999999999887653 34444432 147899999 7765 3334
Q ss_pred EEeEecccCCCcc-c-ccCccHHHHHHHHHHHH
Q psy2592 123 LSVQESNPRPSAY-K-ADALPTNLTRLAYRRYT 153 (217)
Q Consensus 123 ~Pv~~G~~~~~~~-~-~~~gG~~lt~~L~s~l~ 153 (217)
+-+..|..---+. . ..+||.++++.|...+.
T Consensus 202 ~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 202 LEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred EEEeCCeEEEEEecCCCCcChHHHHHHHHHHHH
Confidence 4444443222222 2 67999999999887664
No 43
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=90.16 E-value=1.5 Score=42.98 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHh---hhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCce---------------------eEE
Q psy2592 43 DLMERFFEQCIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI---------------------TAK 98 (217)
Q Consensus 43 d~~e~iw~~~f~---~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl---------------------~gl 98 (217)
+....++.++.. +.++. .-..+++|-|++.+..+|+.+.+ ..+..|+..+ +-+
T Consensus 128 ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 204 (616)
T PRK05183 128 EVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQATKD-AARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIA 204 (616)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhhcccCCCCEEE
Confidence 333445555442 23432 23468899999999999987755 4556666432 357
Q ss_pred EeecCcccccccccccCCCCCcceEEeEecccCCCc-cc-ccCccHHHHHHHHHHHHh
Q psy2592 99 VLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSA-YK-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 99 VvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~-~~-~~~gG~~lt~~L~s~l~K 154 (217)
|+|+| .+.+ ..+++-+..|..---+ .. ..+||.++++.|...+.+
T Consensus 205 V~DlG------GGT~-----DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~ 251 (616)
T PRK05183 205 VYDLG------GGTF-----DISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILE 251 (616)
T ss_pred EEECC------CCeE-----EEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHH
Confidence 99999 7655 2334444444321122 23 679999999999988765
No 44
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=89.79 E-value=0.15 Score=46.11 Aligned_cols=47 Identities=36% Similarity=0.580 Sum_probs=33.6
Q ss_pred HHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhcC
Q psy2592 152 YTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKG 207 (217)
Q Consensus 152 l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~~ 207 (217)
.+|+||++++.|+.++|++||++ +......+ ..+++++|++|.+.++
T Consensus 12 ~~k~G~~~~~~P~~~~ps~v~~~--------~~~~~~~~-~~~~~~~G~~a~~~~~ 58 (373)
T smart00268 12 TIKAGFAGEDEPQVVFPSIVGRP--------KDGKGMVG-DAKDTFVGDEAQEKRG 58 (373)
T ss_pred cEEEeeCCCCCCcEEccceeeEe--------cccccccC-CCcceEecchhhhcCC
Confidence 46899999999999999999865 22211111 2347899999977665
No 45
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=89.79 E-value=0.59 Score=44.80 Aligned_cols=79 Identities=10% Similarity=-0.015 Sum_probs=50.9
Q ss_pred CeEEEecCCCCChhhhhhhhhhhhhhccCCce----------------------eEEEeecCcccccccccccCCCCCcc
Q psy2592 64 HYFLLTEPPLNTPENREYTAGIYLRVLTEGTI----------------------TAKVLSSRNQREKEDRIGKSQPFRER 121 (217)
Q Consensus 64 ~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl----------------------~glVvD~G~q~~~~~~~t~~~~~~~~ 121 (217)
..+++|-|+..+..+|+.+-+ ..+.-|+..+ +-+|+|+| .+.+ ..+
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~-Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~G------ggt~-----dvs 203 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRD-AAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFG------GGTF-----DVS 203 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHH-HHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEE------SSEE-----EEE
T ss_pred ccceeeechhhhhhhhhcccc-cccccccccceeecccccccccccccccccccceeccccc------cceE-----eee
Confidence 358999999999999987776 3344444321 57899999 7655 334
Q ss_pred eEEeEecccCCCccc--ccCccHHHHHHHHHHHHh
Q psy2592 122 TLSVQESNPRPSAYK--ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 122 v~Pv~~G~~~~~~~~--~~~gG~~lt~~L~s~l~K 154 (217)
++-+..|..--.+.. ..+||.++++.|.+.+.+
T Consensus 204 ~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 204 VVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred ehhcccccccccccccccccccceecceeeccccc
Confidence 444555644333333 689999999999887753
No 46
>PRK13411 molecular chaperone DnaK; Provisional
Probab=89.62 E-value=1.7 Score=42.89 Aligned_cols=79 Identities=10% Similarity=-0.036 Sum_probs=52.5
Q ss_pred CeEEEecCCCCChhhhhhhhhhhhhhccCCce----------------------eEEEeecCcccccccccccCCCCCcc
Q psy2592 64 HYFLLTEPPLNTPENREYTAGIYLRVLTEGTI----------------------TAKVLSSRNQREKEDRIGKSQPFRER 121 (217)
Q Consensus 64 ~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl----------------------~glVvD~G~q~~~~~~~t~~~~~~~~ 121 (217)
..+++|-|++.+..+|+.+.+ ..+.-|+..+ +-+|+|+| .+.+ ..+
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlG------gGT~-----dvs 201 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKD-AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLG------GGTF-----DVS 201 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcC------CCeE-----EEE
Confidence 458899999999999988766 3333343211 46799999 7655 334
Q ss_pred eEEeEecccCCCccc--ccCccHHHHHHHHHHHHh
Q psy2592 122 TLSVQESNPRPSAYK--ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 122 v~Pv~~G~~~~~~~~--~~~gG~~lt~~L~s~l~K 154 (217)
++-+..|..--.+.. ..+||.++++.|...+.+
T Consensus 202 i~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~ 236 (653)
T PRK13411 202 ILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVE 236 (653)
T ss_pred EEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 555555543222333 579999999988876643
No 47
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=88.88 E-value=1.1 Score=44.09 Aligned_cols=79 Identities=8% Similarity=-0.043 Sum_probs=53.3
Q ss_pred CeEEEecCCCCChhhhhhhhhhhhhhccCCc-----------------------eeEEEeecCcccccccccccCCCCCc
Q psy2592 64 HYFLLTEPPLNTPENREYTAGIYLRVLTEGT-----------------------ITAKVLSSRNQREKEDRIGKSQPFRE 120 (217)
Q Consensus 64 ~pvlltEp~~~~~~~Rek~~EilFE~f~vps-----------------------l~glVvD~G~q~~~~~~~t~~~~~~~ 120 (217)
..+++|-|++.+..+|+.+.+ ..+..|+.. -+-+|+|+| .+.+ ..
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~G------ggT~-----dv 208 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLG------GGTF-----DV 208 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECC------CCeE-----EE
Confidence 468999999999998887765 334444432 147899999 7655 33
Q ss_pred ceEEeEecccCCCccc--ccCccHHHHHHHHHHHHh
Q psy2592 121 RTLSVQESNPRPSAYK--ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 121 ~v~Pv~~G~~~~~~~~--~~~gG~~lt~~L~s~l~K 154 (217)
+++-+..|..--.+.. ..+||.++++.|...+.+
T Consensus 209 sv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~ 244 (653)
T PTZ00009 209 SLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQ 244 (653)
T ss_pred EEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHH
Confidence 4444445543222333 679999999999887754
No 48
>CHL00094 dnaK heat shock protein 70
Probab=88.65 E-value=2.3 Score=41.68 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHh---hhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCce---------------------eEE
Q psy2592 43 DLMERFFEQCIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI---------------------TAK 98 (217)
Q Consensus 43 d~~e~iw~~~f~---~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl---------------------~gl 98 (217)
+....++.++.. ..++.. -..+++|-|...+..+|+.+.+.. +.-|+..+ .-+
T Consensus 114 ei~a~iL~~l~~~ae~~lg~~--v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vl 190 (621)
T CHL00094 114 EISAQVLRKLVEDASKYLGET--VTQAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETIL 190 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--CCeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEE
Confidence 444555665543 223322 245788999999988888776643 44444321 467
Q ss_pred EeecCcccccccccccCCCCCcceEEeEecccC-CCccc-ccCccHHHHHHHHHHHHh
Q psy2592 99 VLSSRNQREKEDRIGKSQPFRERTLSVQESNPR-PSAYK-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 99 VvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~-~~~~~-~~~gG~~lt~~L~s~l~K 154 (217)
|+|+| .+.+ ..+++-+..|..- ..... ..+||.++++.|...+.+
T Consensus 191 V~DlG------gGT~-----DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~ 237 (621)
T CHL00094 191 VFDLG------GGTF-----DVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIK 237 (621)
T ss_pred EEEcC------CCeE-----EEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHH
Confidence 99999 8766 2233333333221 11223 689999999988876643
No 49
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=88.52 E-value=2.4 Score=41.43 Aligned_cols=98 Identities=10% Similarity=-0.030 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHh---hhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCce---------------------eEE
Q psy2592 43 DLMERFFEQCIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI---------------------TAK 98 (217)
Q Consensus 43 d~~e~iw~~~f~---~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl---------------------~gl 98 (217)
+....++.++-. ..++. .-..+++|-|+..+..+|+.+-+. .+.-|+.-+ +-+
T Consensus 120 ei~a~iL~~lk~~ae~~lg~--~v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 196 (595)
T PRK01433 120 EIAAEIFIYLKNQAEEQLKT--NITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYL 196 (595)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEE
Confidence 444445555432 23432 224688999999999999887764 444444321 357
Q ss_pred EeecCcccccccccccCCCCCcceEEeEecccCCCccc--ccCccHHHHHHHHHHHHh
Q psy2592 99 VLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK--ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 99 VvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~--~~~gG~~lt~~L~s~l~K 154 (217)
|+|+| .+.+ ..+++-+.+|..--.+.. ..+||.++++.|...+.+
T Consensus 197 V~DlG------GGT~-----DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~ 243 (595)
T PRK01433 197 VYDLG------GGTF-----DVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCN 243 (595)
T ss_pred EEECC------CCcE-----EEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHH
Confidence 99999 7654 444555555643222332 579999999999887764
No 50
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=86.57 E-value=1.8 Score=42.79 Aligned_cols=79 Identities=9% Similarity=-0.089 Sum_probs=53.1
Q ss_pred CeEEEecCCCCChhhhhhhhhhhhhhccCCc---------------------eeEEEeecCcccccccccccCCCCCcce
Q psy2592 64 HYFLLTEPPLNTPENREYTAGIYLRVLTEGT---------------------ITAKVLSSRNQREKEDRIGKSQPFRERT 122 (217)
Q Consensus 64 ~pvlltEp~~~~~~~Rek~~EilFE~f~vps---------------------l~glVvD~G~q~~~~~~~t~~~~~~~~v 122 (217)
..+++|-|++....+|+.+.+ ..+.-|+.- -.-+|+|+| .+.+ ..++
T Consensus 161 ~~aVITVPayF~~~qR~at~~-Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlG------GGT~-----DvSi 228 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKD-AGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLG------GGTF-----DISV 228 (657)
T ss_pred ceEEEEECCCCChHHHHHHHH-HHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECC------CCeE-----EEEE
Confidence 458899999999999988766 223333321 146899999 7655 3345
Q ss_pred EEeEecccCCCccc--ccCccHHHHHHHHHHHHh
Q psy2592 123 LSVQESNPRPSAYK--ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 123 ~Pv~~G~~~~~~~~--~~~gG~~lt~~L~s~l~K 154 (217)
+-+.+|..--.+.. ..+||.++++.|...+.+
T Consensus 229 l~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 229 LEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred EEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHH
Confidence 55556654333333 689999999888876654
No 51
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=83.66 E-value=1.2 Score=40.52 Aligned_cols=40 Identities=8% Similarity=-0.080 Sum_probs=32.7
Q ss_pred EEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHH
Q psy2592 97 AKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRR 151 (217)
Q Consensus 97 glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~ 151 (217)
.+|+|+| ++.| .+..+.+|.+.. .+ +++||+++|+.+...
T Consensus 198 ~~vvDiG------~gtt-------~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~ 238 (371)
T TIGR01174 198 VCLIDIG------GGTT-------DIAVYTGGSIRY--TKVIPIGGNHITKDIAKA 238 (371)
T ss_pred EEEEEeC------CCcE-------EEEEEECCEEEE--EeeecchHHHHHHHHHHH
Confidence 5799999 9988 888888887543 45 999999999998643
No 52
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=83.28 E-value=0.48 Score=42.98 Aligned_cols=42 Identities=31% Similarity=0.631 Sum_probs=29.8
Q ss_pred HHhhCccCCCCCceeeeeeeeecccccccchhhhhcccCCCCCcceecHHHHhhc
Q psy2592 152 YTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAK 206 (217)
Q Consensus 152 l~K~Gfag~~~P~~~~ps~VG~~~~~~~g~~~~~~~~~g~~~~d~~vG~ea~~~~ 206 (217)
.+|+||++++.|+.++|+.+|++. ... ...++++|+++...+
T Consensus 15 ~~k~G~age~~P~~v~ps~~~~~~--------~~~-----~~~~~~~g~~~~~~~ 56 (393)
T PF00022_consen 15 TIKAGFAGEDLPRVVIPSVVGRPR--------DKN-----SSNDYYVGDEALSPR 56 (393)
T ss_dssp EEEEEETTSSS-SEEEESEEEEES--------SSS-----SSSSCEETHHHHHTG
T ss_pred eEEEEECCCCCCCCcCCCcccccc--------ccc-----cceeEEeecccccch
Confidence 348999999999999999998762 211 112688998866533
No 53
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=79.61 E-value=10 Score=36.98 Aligned_cols=80 Identities=10% Similarity=-0.046 Sum_probs=56.9
Q ss_pred CCeEEEecCCCCChhhhhhhhhhhhhhccCCce---------------------eEEEeecCcccccccccccCCCCCcc
Q psy2592 63 DHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI---------------------TAKVLSSRNQREKEDRIGKSQPFRER 121 (217)
Q Consensus 63 d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl---------------------~glVvD~G~q~~~~~~~t~~~~~~~~ 121 (217)
-+.+++|-|.+....+|..+.+ .....|++-+ +-+|+|+| .+.+ ..+
T Consensus 120 v~~~VItVPayF~d~qR~at~~-A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlG------GGTf-----DvS 187 (579)
T COG0443 120 VTDAVITVPAYFNDAQRQATKD-AARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLG------GGTF-----DVS 187 (579)
T ss_pred cceEEEEeCCCCCHHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcC------CCCE-----EEE
Confidence 4568899999999888877666 4445555433 57799999 6544 677
Q ss_pred eEEeEecccCCC-ccc-ccCccHHHHHHHHHHHHh
Q psy2592 122 TLSVQESNPRPS-AYK-ADALPTNLTRLAYRRYTK 154 (217)
Q Consensus 122 v~Pv~~G~~~~~-~~~-~~~gG~~lt~~L~s~l~K 154 (217)
++-+-+|..--. +.. ..+||.++++.|...+.+
T Consensus 188 ll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 188 LLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred EEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHH
Confidence 888877733323 333 789999999999876644
No 54
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=78.26 E-value=12 Score=33.30 Aligned_cols=125 Identities=11% Similarity=0.067 Sum_probs=75.7
Q ss_pred CCCceeeCcccccCCC----ccccCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCC-hhhhhhhhhhhhhh-
Q psy2592 16 VGYERFLGPEIFFHPE----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNT-PENREYTAGIYLRV- 89 (217)
Q Consensus 16 ~~~~~~vG~ea~~~~~----~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~-~~~Rek~~EilFE~- 89 (217)
..+.|+||+.+..... +-+.+....+ +....++.+++.. .+.+ +-..|+|==|... ...|+.+.+.+-..
T Consensus 54 ~g~~y~VG~~a~~~~~~~~~~~~~~~~~~~-~~~~~L~~~Al~~-~~~~--~~~~lv~GLP~~~~~~~k~~l~~~l~g~~ 129 (320)
T TIGR03739 54 GGLFYEVGPDVSLAADTNRARQLHDEYTET-PEYMALLRGALAL-SKVR--EIDQLVVGLPVATLTTYKSALEKAVTGEH 129 (320)
T ss_pred CCEEEEeccchhhcccCccceeccccccCC-HHHHHHHHHHHHH-hcCC--CCCEEEECCCHHHHHHHHHHHHHHhccce
Confidence 3378999998853221 2333333222 5677788888743 2321 2223455544433 55677776655432
Q ss_pred -------ccC----------Cce---------------eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-
Q psy2592 90 -------LTE----------GTI---------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK- 136 (217)
Q Consensus 90 -------f~v----------psl---------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~- 136 (217)
+.+ +++ ..+|||+| +..| -++-+..+.+....+.
T Consensus 130 ~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG------~~Tt-------D~~~~~~~~~~~~~s~s 196 (320)
T TIGR03739 130 DIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPG------YFTF-------DWLVARGMRLVQKRSGS 196 (320)
T ss_pred ecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecC------CCee-------eeehccCCEEcccccCC
Confidence 111 111 24899999 9888 7776677777777776
Q ss_pred ccCccHHHHHHHHHHHHhh-Cc
Q psy2592 137 ADALPTNLTRLAYRRYTKL-GF 157 (217)
Q Consensus 137 ~~~gG~~lt~~L~s~l~K~-Gf 157 (217)
++.|-..+.+.+.+.+.+. |.
T Consensus 197 ~~~G~~~~~~~I~~~i~~~~g~ 218 (320)
T TIGR03739 197 VNGGMSDIYRLLAAEISKDIGT 218 (320)
T ss_pred chhHHHHHHHHHHHHHHhhcCC
Confidence 8899899999998888644 43
No 55
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=71.43 E-value=4.5 Score=37.63 Aligned_cols=41 Identities=10% Similarity=-0.121 Sum_probs=31.1
Q ss_pred EEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHH
Q psy2592 97 AKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRY 152 (217)
Q Consensus 97 glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l 152 (217)
.+|||+| ++.| .+.=+.+|.+. ... +++||.++|+.+...+
T Consensus 206 v~vvDiG------ggtT-------disv~~~G~l~--~~~~i~~GG~~it~dIa~~l 247 (420)
T PRK09472 206 VCVVDIG------GGTM-------DIAVYTGGALR--HTKVIPYAGNVVTSDIAYAF 247 (420)
T ss_pred eEEEEeC------CCce-------EEEEEECCEEE--EEeeeechHHHHHHHHHHHh
Confidence 5699999 9888 66656666544 345 9999999999997554
No 56
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=71.24 E-value=5.7 Score=34.35 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
|.++.|=+|+| ..++.||+|+--..++.++.++|+++|-|.||--
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (229)
T cd08627 74 DVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGDM 118 (229)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhhh
Confidence 34455555555 4588999999999999999999999999999963
No 57
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=71.09 E-value=5.7 Score=34.86 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..++.++.++|+++|=|.||-
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 34455555555 458899999999999999999999999999884
No 58
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=70.57 E-value=5.9 Score=34.87 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
|.++.|=+|+| ..++.||+|+--..++.++.++|+++|=|.||--
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd~ 118 (258)
T cd08630 74 DVIQAVRQHAF------TASPYPVILSLENHCGLEQQAAMARHLQTILGDM 118 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHhhh
Confidence 45555666666 3588999999999999999999999999999853
No 59
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=70.03 E-value=6 Score=34.81 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..++.++.++|+++|=|.||-
T Consensus 74 ~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34455556665 457899999999999999999999999999985
No 60
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=69.89 E-value=6.2 Score=34.66 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
|.++.|=+|+| ..++.||+|+--..++.+++++|+++|=|.||--
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd~ 118 (254)
T cd08596 74 DVVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFGEK 118 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhHh
Confidence 34455555555 3478999999999999999999999999999863
No 61
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=69.88 E-value=6.1 Score=34.76 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..++.+++++|+++|=|.||-
T Consensus 76 dv~~aI~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 76 DVIQAIKDTAF------VTSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHhc------ccCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 44566666666 347899999999999999999999999999885
No 62
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=69.25 E-value=6.4 Score=34.63 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..++.++.++|+++|=|.||-
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 45555556665 468999999999999999999999999999985
No 63
>PRK11678 putative chaperone; Provisional
Probab=69.17 E-value=35 Score=32.26 Aligned_cols=119 Identities=11% Similarity=-0.051 Sum_probs=63.5
Q ss_pred CceeeCcccccCC----C--------------ccccCCccCCHHHH-HHHHHHHHh---hhcCCCCCCCeEEEecCCCCC
Q psy2592 18 YERFLGPEIFFHP----E--------------YPVRHGLVEDWDLM-ERFFEQCIF---KYLRAEPEDHYFLLTEPPLNT 75 (217)
Q Consensus 18 ~~~~vG~ea~~~~----~--------------~Pi~~G~I~dwd~~-e~iw~~~f~---~~L~v~p~d~pvlltEp~~~~ 75 (217)
....||.+|.... . .++..+.+...+.+ ..+|.++-. ..++.. -..+++|-|....
T Consensus 84 ~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~~--v~~~VItvPa~F~ 161 (450)
T PRK11678 84 QSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQAA--ITQAVIGRPVNFQ 161 (450)
T ss_pred cccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEEECCccc
Confidence 4567888875421 1 23444444444332 445555421 233322 2458899998765
Q ss_pred -----hhhhhhh--hhhhhhhccCCce---------------------eEEEeecCcccccccccccCCCCCcceEEeEe
Q psy2592 76 -----PENREYT--AGIYLRVLTEGTI---------------------TAKVLSSRNQREKEDRIGKSQPFRERTLSVQE 127 (217)
Q Consensus 76 -----~~~Rek~--~EilFE~f~vpsl---------------------~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~ 127 (217)
..+|+.. ..-..+.-|++.+ .-+|+|+| .+.+ ..+++-+..
T Consensus 162 ~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~G------GGT~-----D~Svv~~~~ 230 (450)
T PRK11678 162 GLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIG------GGTT-----DCSMLLMGP 230 (450)
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeC------CCeE-----EEEEEEecC
Confidence 4555332 3334455555432 46799999 7654 334444432
Q ss_pred cccC-------CCccc-ccCccHHHHHHHH
Q psy2592 128 SNPR-------PSAYK-ADALPTNLTRLAY 149 (217)
Q Consensus 128 G~~~-------~~~~~-~~~gG~~lt~~L~ 149 (217)
+..- .-+.. ..+||.++++.|.
T Consensus 231 ~~~~~~~r~~~vla~~G~~lGG~DfD~~L~ 260 (450)
T PRK11678 231 SWRGRADRSASLLGHSGQRIGGNDLDIALA 260 (450)
T ss_pred cccccCCcceeEEecCCCCCChHHHHHHHH
Confidence 2110 01122 4799999999986
No 64
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=69.11 E-value=6.4 Score=34.63 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 42 WDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 42 wd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
=|.++.|=+|+| ..++.||+|+--..++.+++++|+++|=|.||-
T Consensus 73 ~~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 73 KDVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 355566666666 347899999999999999999999999999986
No 65
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=68.51 E-value=7 Score=34.34 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
|.++.|=+|+| ..++.||+|+--..++.++.++|+++|=|.||--
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGDK 118 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhHh
Confidence 44455556666 3488999999999999999999999999999853
No 66
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=68.08 E-value=6.9 Score=34.44 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+-...++.++.++|+++|=|.||-
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 33455555555 458899999999999999999999999999985
No 67
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=67.86 E-value=7.4 Score=33.64 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCc
Q psy2592 42 WDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGT 94 (217)
Q Consensus 42 wd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vps 94 (217)
=|.++.|=+|+| ..++.||+|+--..++.++.++|+++|=|.||---
T Consensus 73 ~dv~~aI~~~AF------~~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd~L 119 (227)
T cd08594 73 RDVIETINKYAF------IKNEYPVILSIENHCSVQQQKKMAQYLKEILGDKL 119 (227)
T ss_pred HHHHHHHHHhhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhHHh
Confidence 345566666666 34889999999999999999999999999998643
No 68
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=67.39 E-value=7.3 Score=34.26 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
|.++.|=+|+| ..++.||+|+--..++.+++++||++|=|.||--
T Consensus 76 ~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 120 (257)
T cd08591 76 DVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGDL 120 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 33445555555 4588999999999999999999999999998853
No 69
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=65.07 E-value=7.9 Score=34.48 Aligned_cols=40 Identities=10% Similarity=-0.096 Sum_probs=31.6
Q ss_pred EEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHH
Q psy2592 97 AKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRR 151 (217)
Q Consensus 97 glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~ 151 (217)
.++||+| +..| .++-+.+|.++. .+ +++||.++|+-+.+.
T Consensus 190 ~~lvdiG------~~~t-------~l~i~~~g~~~~--~r~i~~G~~~i~~~i~~~ 230 (348)
T TIGR01175 190 AALVDIG------ATSS-------TLNLLHPGRMLF--TREVPFGTRQLTSELSRA 230 (348)
T ss_pred EEEEEEC------CCcE-------EEEEEECCeEEE--EEEeechHHHHHHHHHHH
Confidence 7799999 9988 776677777654 45 899999999888654
No 70
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=65.07 E-value=8.7 Score=33.28 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCc
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGT 94 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vps 94 (217)
|.++.|=+|+| ..++.||+|+--..++.+++++|+++|=|.||---
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~~L 119 (231)
T cd08598 74 DVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGDLL 119 (231)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHh
Confidence 44455556665 34789999999999999999999999999999643
No 71
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=64.94 E-value=8.8 Score=33.20 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
|.++.|=+|+| ..++.||+|+--..++.++.++|+++|=|.||--
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 118 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGDM 118 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhHH
Confidence 44555556665 4588999999889999999999999999999864
No 72
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=62.68 E-value=9.6 Score=32.89 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCceeE
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGTITA 97 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl~g 97 (217)
|.++.|=+|+| ..++.||+|+--..++.+++++|+++|=|.||---++.
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd~L~~~ 122 (226)
T cd08558 74 DVIEAIKEYAF------VTSPYPVILSLENHCSLEQQKKMAQILKEIFGDKLLTP 122 (226)
T ss_pred HHHHHHHHHhc------ccCCCCeEEEEecCCCHHHHHHHHHHHHHHHhhhhcCC
Confidence 44556666666 33799999999999999999999999999999654443
No 73
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=62.45 E-value=9.9 Score=33.50 Aligned_cols=45 Identities=9% Similarity=0.077 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vp 93 (217)
|.++.|=+|+| ..++.||+|+--..++.+++++|+++|=|.||--
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~~ 118 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGDK 118 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 34455555555 4478999999889999999999999999999863
No 74
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=61.45 E-value=11 Score=33.18 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCC-ChhhhhhhhhhhhhhccCC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLN-TPENREYTAGIYLRVLTEG 93 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~-~~~~Rek~~EilFE~f~vp 93 (217)
|.++.|=+|+| ..++.||+|+--..+ +.++.++|+++|=|.||--
T Consensus 76 dv~~~I~~~AF------~~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd~ 121 (258)
T cd08623 76 EVIEAIAECAF------KTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGDA 121 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhhh
Confidence 34455556665 458999999988888 5899999999999999853
No 75
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=61.28 E-value=8.4 Score=34.56 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=29.9
Q ss_pred EEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHH
Q psy2592 98 KVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRY 152 (217)
Q Consensus 98 lVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l 152 (217)
++||+| +..| ++.=+.+|.++. .+ +++||.++|+-+.+.+
T Consensus 183 ~lvdiG------~~~t-------~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~ 223 (340)
T PF11104_consen 183 ALVDIG------ASST-------TVIIFQNGKPIF--SRSIPIGGNDLTEAIAREL 223 (340)
T ss_dssp EEEEE-------SS-E-------EEEEEETTEEEE--EEEES-SHHHHHHHHHHHT
T ss_pred EEEEec------CCeE-------EEEEEECCEEEE--EEEEeeCHHHHHHHHHHhc
Confidence 699999 9888 777777888763 45 8999999999887664
No 76
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=60.37 E-value=12 Score=27.43 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=36.6
Q ss_pred cCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhcc
Q psy2592 35 RHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLT 91 (217)
Q Consensus 35 ~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~ 91 (217)
+.|+|.|+..++++++.+. +. =||..|...+++. ...-|.||+.+|+.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~-----lDh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DR-----LDHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-Hh-----CCCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 5899999999999998755 32 3566666555554 3467899999998763
No 77
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=60.34 E-value=12 Score=33.11 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCC-ChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLN-TPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~-~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..+ +.+++++|+++|=|.||-
T Consensus 76 dv~~~I~~~AF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAF------KTSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 44455556666 348999999988888 789999999999999986
No 78
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.21 E-value=12 Score=34.36 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=33.7
Q ss_pred EEEeecCcccccccccccCCCCCcceEEeEecccCCCcccccCccHHHHHHHHHHH
Q psy2592 97 AKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYKADALPTNLTRLAYRRY 152 (217)
Q Consensus 97 glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~~~~gG~~lt~~L~s~l 152 (217)
.+|+|+| +..| .+.=+++|+++.. -.+++||+++|+-+++.+
T Consensus 195 vav~~Ig------at~s-------~l~vi~~gk~ly~-r~~~~g~~Qlt~~i~r~~ 236 (354)
T COG4972 195 VAVFDIG------ATSS-------ELLVIQDGKILYT-REVPVGTDQLTQEIQRAY 236 (354)
T ss_pred heeeeec------ccce-------EEEEEECCeeeeE-eeccCcHHHHHHHHHHHh
Confidence 4589999 9887 7877888888764 228999999999987654
No 79
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=58.79 E-value=13 Score=32.65 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..++.++.++|+++|=|.||-
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 34455556655 347899999999999999999999999999985
No 80
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=55.71 E-value=15 Score=32.41 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCC-ChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLN-TPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~-~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..+ +.+++++|+++|=|.||-
T Consensus 76 dv~~~I~~~aF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAF------KTSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 44455556666 347899999988888 689999999999988885
No 81
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=53.30 E-value=15 Score=34.48 Aligned_cols=41 Identities=5% Similarity=-0.096 Sum_probs=30.2
Q ss_pred EEEeecCcccccccccccCCCCCcceEEeEecccCCCcccccCccHHHHHHHHHH
Q psy2592 97 AKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYKADALPTNLTRLAYRR 151 (217)
Q Consensus 97 glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~~~~gG~~lt~~L~s~ 151 (217)
.++||+| ++.| .+.-+.+|.+. ++-.+++||.++|+-+...
T Consensus 205 v~lIDiG------~GTT-------dIai~~~G~l~-~~~~ipvgG~~vT~DIa~~ 245 (418)
T COG0849 205 VALIDIG------GGTT-------DIAIYKNGALR-YTGVIPVGGDHVTKDIAKG 245 (418)
T ss_pred eEEEEeC------CCcE-------EEEEEECCEEE-EEeeEeeCccHHHHHHHHH
Confidence 6699999 9888 55555555544 3333999999999988644
No 82
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=51.76 E-value=27 Score=31.64 Aligned_cols=46 Identities=7% Similarity=-0.078 Sum_probs=37.9
Q ss_pred EEEeecCcccccccccccCCCCCcceEEeEecccCCCccc-ccCccHHHHHHHHHHHHhh
Q psy2592 97 AKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK-ADALPTNLTRLAYRRYTKL 155 (217)
Q Consensus 97 glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~-~~~gG~~lt~~L~s~l~K~ 155 (217)
.+|||+| +..| -++-+..+.+...... ++.|..++-+.+.+.+.+.
T Consensus 187 ilvIDIG------~~Tt-------D~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 187 VSVIDFG------SGTT-------DLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred EEEEEcC------CCcE-------EEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 3799999 9888 7777777778777777 9999999999998888554
No 83
>PLN02222 phosphoinositide phospholipase C 2
Probab=50.67 E-value=18 Score=35.48 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..++..++.+||++|-|.||-
T Consensus 176 ~v~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 176 KCLKAIRAHAF------DVSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 34455555555 458899999999999999999999999999884
No 84
>PLN02230 phosphoinositide phospholipase C 4
Probab=50.28 E-value=19 Score=35.38 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..++..+.++||++|-|.||-
T Consensus 187 ~v~~~I~~~aF------~~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAF------AISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhcc------CCCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 45566666666 448899999999999999999999999999985
No 85
>PLN02223 phosphoinositide phospholipase C
Probab=50.05 E-value=21 Score=34.68 Aligned_cols=45 Identities=7% Similarity=0.070 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+|. ..++.||+||--..++..++.+||+++=|.||=
T Consensus 179 ~vl~aI~~~AF~-----~s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAFT-----KCRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhhh-----cCCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 566667677773 224999999999999999999999999988884
No 86
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=49.19 E-value=28 Score=33.34 Aligned_cols=112 Identities=11% Similarity=-0.005 Sum_probs=68.4
Q ss_pred ccccCCccCCHHHHHHHHHHHHhhhcCCCCCC---CeEEEecCCCCChhhhhhhhhh---------------h----hhh
Q psy2592 32 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPED---HYFLLTEPPLNTPENREYTAGI---------------Y----LRV 89 (217)
Q Consensus 32 ~Pi~~G~I~dwd~~e~iw~~~f~~~L~v~p~d---~pvlltEp~~~~~~~Rek~~Ei---------------l----FE~ 89 (217)
.|+......|-+++..+.+.-| ++=++.|++ .-.++|-.. +..+|-++..+- - +.-
T Consensus 55 TPl~~~~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~-~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~ 132 (475)
T PRK10719 55 TPLLKQGEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGET-ARKENAREVVMALSGSAGDFVVATAGPDLESIIAG 132 (475)
T ss_pred cCCCCCccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEech-hHHHHHHHHHHHhcccccceeeeccCccHHHhhhH
Confidence 8998888889999999998877 455777752 333444432 233333333331 1 111
Q ss_pred ccCCc--------eeEEEeecCcccccccccccCCCCCcceEEeEecccCCCcccccCccHHHHHH-----------HHH
Q psy2592 90 LTEGT--------ITAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYKADALPTNLTRL-----------AYR 150 (217)
Q Consensus 90 f~vps--------l~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~~~~gG~~lt~~-----------L~s 150 (217)
+.... ...++||+| .+.| .+.=+.+|.+.. +..+++||+.+|+- .+.
T Consensus 133 ~ASg~avLseEke~gVa~IDIG------gGTT-------~iaVf~~G~l~~-T~~l~vGG~~IT~D~~~~i~yis~~~~~ 198 (475)
T PRK10719 133 KGAGAQTLSEERNTRVLNIDIG------GGTA-------NYALFDAGKVID-TACLNVGGRLIETDSQGRVTYISPPGQM 198 (475)
T ss_pred HHhhHHHhhhhccCceEEEEeC------CCce-------EEEEEECCEEEE-EEEEecccceEEECCCCCEEEEChHHHH
Confidence 11111 246799999 9988 777677777543 33389999888753 345
Q ss_pred HHHhhCccC
Q psy2592 151 RYTKLGFAA 159 (217)
Q Consensus 151 ~l~K~Gfag 159 (217)
.+.+.|+..
T Consensus 199 l~~~~~~~~ 207 (475)
T PRK10719 199 ILDELGLAI 207 (475)
T ss_pred HHHHcCCCc
Confidence 555666654
No 87
>PLN02952 phosphoinositide phospholipase C
Probab=48.98 E-value=22 Score=35.06 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..++..++.+||++|-|.||-
T Consensus 196 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAF------SSSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 44455556665 347899999999999999999999999999884
No 88
>PLN02228 Phosphoinositide phospholipase C
Probab=46.69 E-value=24 Score=34.51 Aligned_cols=44 Identities=9% Similarity=0.109 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..++..++++||++|=|.||-
T Consensus 179 ~v~~~I~~~AF------~~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~ 222 (567)
T PLN02228 179 KCLNAIKDNAF------QVSDYPVVITLEDHLPPNLQAQVAKMLTKTFRG 222 (567)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhH
Confidence 34455556666 348899999999999999999999999999884
No 89
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=45.81 E-value=21 Score=27.53 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=35.8
Q ss_pred cCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhcc
Q psy2592 35 RHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLT 91 (217)
Q Consensus 35 ~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~ 91 (217)
++|+|.|+..++++++..+.+.| ||..|....+......-|.+|..+|+.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999887663212 56666644332223356888888888776
No 90
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=45.20 E-value=31 Score=29.80 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
|.++.|=+|+| ..++.||+|+--..++.++.++|+++|=|.||-
T Consensus 74 dvl~~I~~~aF------~~s~yPvILslE~hcs~~qQ~~~a~~l~~~lGd 117 (228)
T cd08599 74 DCIKAIKENAF------TASEYPVIITLENHLSPELQAKAAQILRETLGD 117 (228)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 33444445554 347899999888889999999999999999994
No 91
>KOG0169|consensus
Probab=42.71 E-value=29 Score=34.94 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 43 DLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 43 d~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
+.++.|=+|+| ..++.||+||--..+++.+..+||++|=|.||-
T Consensus 361 ~vl~aIk~~AF------~~S~YPvIlsLE~Hc~~~qQ~~mA~~~~~ifGd 404 (746)
T KOG0169|consen 361 DVLRAIKKYAF------VTSPYPVILTLENHCSPDQQAKMAQMLKEIFGD 404 (746)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 44555556666 458999999999999999999999999999884
No 92
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=39.08 E-value=32 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCC
Q psy2592 39 VEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPL 73 (217)
Q Consensus 39 I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~ 73 (217)
.+--+.+..+|+|+-.+.| .+|++...++....+
T Consensus 20 ~sr~~v~~~lw~YIk~~~L-~dp~~k~~I~cD~~L 53 (76)
T PF02201_consen 20 LSRSEVVKRLWQYIKENNL-QDPKDKRIIICDEKL 53 (76)
T ss_dssp EEHHHHHHHHHHHHHHTTS-BESSSTTEEE-TTSH
T ss_pred CCHHHHHHHHHHHHHHhcC-CCcccCceEecCHHH
Confidence 4445788999999987777 488888887766543
No 93
>PF14183 YwpF: YwpF-like protein
Probab=38.18 E-value=38 Score=26.99 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=54.0
Q ss_pred ccccCCccCCHHHHHHH----------HHHHHhhhcCCCCC-CCeEEEecCCCCChhhhhhhhhhhhhhccCCce-eEEE
Q psy2592 32 YPVRHGLVEDWDLMERF----------FEQCIFKYLRAEPE-DHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI-TAKV 99 (217)
Q Consensus 32 ~Pi~~G~I~dwd~~e~i----------w~~~f~~~L~v~p~-d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl-~glV 99 (217)
+|+.+|+|.|-++-+.- |...|.+.+.-... +-.|.+|-|..- ||. .+.|
T Consensus 23 i~L~DGLIINkEd~~~~WllEa~i~~~~~~~f~~~~~~~~~~~i~vvIT~~~Nd------------------PA~f~~~v 84 (135)
T PF14183_consen 23 IPLIDGLIINKEDSENTWLLEAVISKEYYEFFEEYQQSQTELDIRVVITRPSND------------------PATFIATV 84 (135)
T ss_pred eeeccceEEeeeCCCCcEEEEEEEchhhHHHHHHHHhCCcEEEEEEEEcCCCCC------------------CcEEEEEE
Confidence 99999999997764333 44444332221111 233455554433 554 3444
Q ss_pred eecCcccccccccccCCCCCcceEEeEecccCCCcccccCccHHHHHHHHHHHHhhCccCCC
Q psy2592 100 LSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYKADALPTNLTRLAYRRYTKLGFAANK 161 (217)
Q Consensus 100 vD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~~~~gG~~lt~~L~s~l~K~Gfag~~ 161 (217)
-++- .-.. ++.-+++|...... .+..+.|.+-+.+.||.|+.
T Consensus 85 ~~i~------~l~~-------~iSVll~G~l~~~r-------~~~aE~lLe~Lv~eG~~Ge~ 126 (135)
T PF14183_consen 85 KSIT------ELEE-------HISVLLEGKLVTRR-------QDYAESLLEDLVDEGLSGEE 126 (135)
T ss_pred EEEE------EcCC-------ceEEEEEEEEEehh-------hHHHHHHHHHHHHcccChHH
Confidence 4443 2222 67778888776543 37777888888899998865
No 94
>KOG1265|consensus
Probab=37.27 E-value=39 Score=34.95 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=29.2
Q ss_pred CCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 60 EPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 60 ~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
..++.||+|+--+.+++++..||++++-+-||=
T Consensus 399 kTSpyPVILSfENH~s~kQQaKMa~ycr~IFGD 431 (1189)
T KOG1265|consen 399 KTSPYPVILSFENHCSPKQQAKMAEYCRDIFGD 431 (1189)
T ss_pred cCCCCceEEeecccCCHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999998888873
No 95
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=35.11 E-value=38 Score=23.65 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.3
Q ss_pred ccCCccCCHHHHHHHHHHHH
Q psy2592 34 VRHGLVEDWDLMERFFEQCI 53 (217)
Q Consensus 34 i~~G~I~dwd~~e~iw~~~f 53 (217)
..+|+-.+|+.+|.++.+.+
T Consensus 23 ~~~~i~~~w~~LeeLL~cYL 42 (66)
T TIGR01568 23 EERELEADWKELEELLACYL 42 (66)
T ss_pred HHcCCCCCHHHHHHHHHHHH
Confidence 36677789999999998765
No 96
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=31.60 E-value=56 Score=29.13 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=31.1
Q ss_pred eEEEeecCcccccccccccCCCCCcceEEeEecccCCCccc--ccCccHHHHHHHHHHHHhhCc
Q psy2592 96 TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSAYK--ADALPTNLTRLAYRRYTKLGF 157 (217)
Q Consensus 96 ~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~~~--~~~gG~~lt~~L~s~l~K~Gf 157 (217)
.-+|||+| ...+ -++-|..+....+.+. .++|-..+++.+.+.+.+.+.
T Consensus 165 ~~lVVDIG------G~T~-------Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~~ 215 (318)
T PF06406_consen 165 SVLVVDIG------GRTT-------DVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSAGI 215 (318)
T ss_dssp EEEEEEE-------SS-E-------EEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--SB
T ss_pred cEEEEEcC------CCeE-------EeeeecCCccccchhccCCchhHHHHHHHHHHHHHHhcC
Confidence 47899999 8766 6665655555444443 678889999999988877443
No 97
>KOG2971|consensus
Probab=26.96 E-value=1.6e+02 Score=26.14 Aligned_cols=91 Identities=12% Similarity=0.237 Sum_probs=62.0
Q ss_pred CCeEEEecCCCCChhhhhhhhhhhhhhccCCceeEEEeecCcccccccccccCCCCCcceEE--eEecccCCCc------
Q psy2592 63 DHYFLLTEPPLNTPENREYTAGIYLRVLTEGTITAKVLSSRNQREKEDRIGKSQPFRERTLS--VQESNPRPSA------ 134 (217)
Q Consensus 63 d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl~glVvD~G~q~~~~~~~t~~~~~~~~v~P--v~~G~~~~~~------ 134 (217)
.+|||...+.+-...+-.-+-|++--.|++|. + +. ||++|..||.. |.||.+....
T Consensus 152 srplLsFd~~Fd~~pHlkl~Kell~q~fgiP~--------~------hr--kSkpf~Dhvf~Fsi~D~~IWfRnyqI~~~ 215 (299)
T KOG2971|consen 152 SRPLLSFDKAFDELPHLKLLKELLEQIFGIPK--------H------HR--KSKPFVDHVFTFSILDGKIWFRNYQISEE 215 (299)
T ss_pred CcceeecccccccchHHHHHHHHHHHHcCCCC--------C------Cc--ccCCccceEEEEEEecCeEEEEEeEeccc
Confidence 57888888888877788788888888888884 4 54 78888877776 6677654332
Q ss_pred --cc-ccCccHHHHHHHHHHHHhhCcc---CCCCCceeeeeee
Q psy2592 135 --YK-ADALPTNLTRLAYRRYTKLGFA---ANKEPQFIIPSAI 171 (217)
Q Consensus 135 --~~-~~~gG~~lt~~L~s~l~K~Gfa---g~~~P~~~~ps~V 171 (217)
.. +++|.+.+-+.+. .+ .-.|. .-..|.++-|+.+
T Consensus 216 ed~~L~EiGPRfvl~~ik-if-~gsFgG~~lYenp~yvspn~~ 256 (299)
T KOG2971|consen 216 EDKTLIEIGPRFVLNVIK-IF-EGSFGGPTLYENPKYVSPNMI 256 (299)
T ss_pred cCcceeeeccHHHHhHHH-HH-hccCCCceeecCccccCHHHH
Confidence 34 6899988877663 22 22333 3445666666665
No 98
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=26.11 E-value=1e+02 Score=23.91 Aligned_cols=33 Identities=9% Similarity=0.208 Sum_probs=25.4
Q ss_pred CCCCCCeEEEecCCCCChhhhhhhhhhhhhhccC
Q psy2592 59 AEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 59 v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~v 92 (217)
..|+ -+|+|.-.......+.+++++++-|.|+-
T Consensus 84 ~~p~-e~VIl~l~~~~~~~~~~~l~~~l~~~~g~ 116 (135)
T smart00148 84 VTSP-YPVILSLENHCSPDQQAKMAQMFKEIFGD 116 (135)
T ss_pred hCCC-CcEEEeehhhCCHHHHHHHHHHHHHHHhH
Confidence 3444 56888777777888889999999999874
No 99
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=23.76 E-value=71 Score=25.02 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=32.9
Q ss_pred cCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCC--CChhhhhhhhhhhhhhccC
Q psy2592 35 RHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPL--NTPENREYTAGIYLRVLTE 92 (217)
Q Consensus 35 ~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~--~~~~~Rek~~EilFE~f~v 92 (217)
..|+|.|+..++++++..+...| ||..|....+. .-...-|.||..+|+.+.-
T Consensus 56 ~~GmviDF~~lk~~l~~~i~~~l-----DH~~Ln~~~~~~~~~~PTaEniA~~i~~~l~~ 110 (135)
T cd00470 56 VTGMVMNLTDLKKAIEEAIMKPL-----DHKNLDDDVPYFADVVSTTENLAVYIWDNLQK 110 (135)
T ss_pred CCCEEEEHHHHHHHHHHHHHhhc-----CCceeccccccccCCCCCHHHHHHHHHHHHHh
Confidence 36999999999987754332322 34444433221 1123568999999988863
No 100
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=23.61 E-value=1.1e+02 Score=26.60 Aligned_cols=87 Identities=15% Similarity=0.029 Sum_probs=48.2
Q ss_pred ccccCCccCCHHHHHHHHHH---HHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCce-------------
Q psy2592 32 YPVRHGLVEDWDLMERFFEQ---CIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI------------- 95 (217)
Q Consensus 32 ~Pi~~G~I~dwd~~e~iw~~---~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl------------- 95 (217)
..+++|+|.|+-..-.+-+. .+.+.|++.-.+.. -+-||-.... --++.--..|+-+.-.+
T Consensus 61 dvVRDGiVvdf~eaveiVrrlkd~lEk~lGi~~tha~--taiPPGt~~~-~~ri~iNViESAGlevl~vlDEPTAaa~vL 137 (277)
T COG4820 61 DVVRDGIVVDFFEAVEIVRRLKDTLEKQLGIRFTHAA--TAIPPGTEQG-DPRISINVIESAGLEVLHVLDEPTAAADVL 137 (277)
T ss_pred hhhccceEEehhhHHHHHHHHHHHHHHhhCeEeeecc--ccCCCCccCC-CceEEEEeecccCceeeeecCCchhHHHHh
Confidence 56789999887655445433 34566776532211 1112222111 11222223455554332
Q ss_pred ---eEEEeecCcccccccccccCCCCCcceEEeEecccCCCc
Q psy2592 96 ---TAKVLSSRNQREKEDRIGKSQPFRERTLSVQESNPRPSA 134 (217)
Q Consensus 96 ---~glVvD~G~q~~~~~~~t~~~~~~~~v~Pv~~G~~~~~~ 134 (217)
.|.|||+| .+.| -+.-+-+|.++..+
T Consensus 138 ~l~dg~VVDiG------GGTT-------GIsi~kkGkViy~A 166 (277)
T COG4820 138 QLDDGGVVDIG------GGTT-------GISIVKKGKVIYSA 166 (277)
T ss_pred ccCCCcEEEeC------CCcc-------eeEEEEcCcEEEec
Confidence 48899999 8888 66667888887653
No 101
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=23.02 E-value=54 Score=24.83 Aligned_cols=51 Identities=25% Similarity=0.366 Sum_probs=32.0
Q ss_pred cCCccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEe-cCCCCC---hhhhhhhhhhhhhhccC
Q psy2592 35 RHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLT-EPPLNT---PENREYTAGIYLRVLTE 92 (217)
Q Consensus 35 ~~G~I~dwd~~e~iw~~~f~~~L~v~p~d~pvllt-Ep~~~~---~~~Rek~~EilFE~f~v 92 (217)
++|++.|+..++++++.+. +.| ||..| - +.|... ...-|.+|..+|+.+.-
T Consensus 42 ~~g~v~DF~~lk~~~~~i~-~~l-----Dh~~L-n~~~~~~~~~~~pT~E~lA~~i~~~l~~ 96 (123)
T PF01242_consen 42 EDGMVVDFGDLKKIIKEID-DQL-----DHKFL-NEDDPEFDDINNPTAENLARWIFERLKE 96 (123)
T ss_dssp TTSSSS-HHHHHHHHHHHH-HHH-----TTEEG-GHHSGCGCSSTS--HHHHHHHHHHHHHH
T ss_pred CCCEEEEHHHHHHHHHHHH-HHh-----Ccccc-cCCChhhhccCCCCHHHHHHHHHHHHHH
Confidence 7899999999999998855 333 34444 2 222222 24578888888887664
No 102
>KOG0681|consensus
Probab=22.90 E-value=22 Score=34.73 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=21.4
Q ss_pred HHHHhhCccCCCCCceeeeeeeeec
Q psy2592 150 RRYTKLGFAANKEPQFIIPSAIAIK 174 (217)
Q Consensus 150 s~l~K~Gfag~~~P~~~~ps~VG~~ 174 (217)
|.-+++||+|+..|+.+|++++-++
T Consensus 32 S~~~RaGw~ge~eP~lvFrNvl~r~ 56 (645)
T KOG0681|consen 32 SYECRAGWAGEKEPRLVFRNVLTRP 56 (645)
T ss_pred ceeEeecccCCCCccchhhhhhccc
Confidence 3457999999999999999999654
No 103
>PRK12338 hypothetical protein; Provisional
Probab=22.41 E-value=2.6e+02 Score=25.34 Aligned_cols=90 Identities=10% Similarity=0.082 Sum_probs=61.3
Q ss_pred ccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCChhhhhhhhhhhhhhccCCce-----------eEEEeecCccc
Q psy2592 38 LVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYLRVLTEGTI-----------TAKVLSSRNQR 106 (217)
Q Consensus 38 ~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp~~~~~~~Rek~~EilFE~f~vpsl-----------~glVvD~G~q~ 106 (217)
.+.+|+....+|+|+... +.++.+.+++ +.+-....+++.+.+-|...+=.+ ..++||.|
T Consensus 160 ~l~~f~~Ir~Iq~~l~~~-----A~e~~VpvI~-N~did~Tv~~ile~I~e~s~~i~~~H~~~~~~~El~~I~vd~G--- 230 (319)
T PRK12338 160 QLEYFRENRIIHDHLVEQ-----AREHNVPVIK-NDDIDCTVKKMLSYIREVCVTVTLQHSVDDLDEVIEIIIKRHG--- 230 (319)
T ss_pred hhhChHHHHHHHHHHHHh-----HhhCCCceeC-CCcHHHHHHHHHHHHHhheEEEEEeCCHHHHHHHHHeEEecCC---
Confidence 889999999999998742 4555565553 444456666666766666554322 45559999
Q ss_pred ccccccccCCCCCcceEEeEecccCCC---ccc--ccCcc-HHHHHHHHHH
Q psy2592 107 EKEDRIGKSQPFRERTLSVQESNPRPS---AYK--ADALP-TNLTRLAYRR 151 (217)
Q Consensus 107 ~~~~~~t~~~~~~~~v~Pv~~G~~~~~---~~~--~~~gG-~~lt~~L~s~ 151 (217)
. +|.-|. ++++. .++ +++.- +++++++.+.
T Consensus 231 ---g----------~v~dV~--h~iyG~~~~i~~~l~i~s~~dv~~Fi~~~ 266 (319)
T PRK12338 231 ---G----------RITDIS--YPIPGFKDPLKREVNVSDPDEAEKFIKRL 266 (319)
T ss_pred ---C----------EEEEec--ccCCCCCceeEEEEccCCHHHHHHHHHHH
Confidence 4 466665 88887 566 78755 8888888654
No 104
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=22.40 E-value=75 Score=22.27 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=23.8
Q ss_pred ccCCHHHHHHHHHHHHhhhcCCCCCCCeEEEecC
Q psy2592 38 LVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEP 71 (217)
Q Consensus 38 ~I~dwd~~e~iw~~~f~~~L~v~p~d~pvlltEp 71 (217)
..+--+....+|+|+-.+.|. +|++...+..++
T Consensus 19 ~~tr~ev~~~lw~YIk~n~L~-d~~~k~~i~~D~ 51 (77)
T smart00151 19 EMTRTEIIKRLWEYIKEHNLQ-DPQNKREILCDS 51 (77)
T ss_pred cCcHHHHHHHHHHHHHHhccc-CCccCCEEecCH
Confidence 344557788999999888775 777766665553
Done!