RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2592
(217 letters)
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 121 bits (305), Expect = 1e-32
Identities = 43/55 (78%), Positives = 51/55 (92%)
Query: 32 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIY 86
YP++HG+VEDWDLME+F+EQCIFKYLR EPE+HYF+LTEPP+N PENREYTA I
Sbjct: 71 YPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIM 125
Score = 69.8 bits (171), Expect = 5e-14
Identities = 31/61 (50%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 152 YTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDA-KGYSV 210
YTK+G+A N EP +IIP+ IA Q+ RR KG EDLDF+IGDEA A K Y++
Sbjct: 15 YTKMGYAGNTEPTYIIPTLIADNS-----KQSRRRSKKGFEDLDFYIGDEALAASKSYTL 69
Query: 211 K 211
Sbjct: 70 T 70
Score = 65.5 bits (160), Expect = 1e-12
Identities = 23/32 (71%), Positives = 27/32 (84%)
Query: 1 YDGVNQITKQPFAVDVGYERFLGPEIFFHPEY 32
Y VN +TK+P+ VDVGYERFLGPE+FFHPE
Sbjct: 253 YTAVNSVTKKPYTVDVGYERFLGPEMFFHPEI 284
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 85.4 bits (212), Expect = 1e-19
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 32 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYL 87
YP+ +G+VE+WD ME+ ++ F LR EPE+H LLTEPP+N NRE I
Sbjct: 64 YPIENGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMF 119
Score = 39.2 bits (92), Expect = 0.001
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 152 YTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEA 202
K GFA PQ + PS + + + D F+GDEA
Sbjct: 12 TIKAGFAGEDFPQVVFPSIVG---------RPKDGKGMVGDAKDIFVGDEA 53
Score = 35.7 bits (83), Expect = 0.011
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 14 VDVGYERFLGPEIFFHPE 31
+ VG ERF PEI F PE
Sbjct: 246 IKVGNERFRIPEILFSPE 263
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 73.4 bits (181), Expect = 2e-15
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 32 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGI 85
YP+ G+VE+WD ME+ +E F+ LR +PE+H LLTEPPLN P NRE I
Sbjct: 62 YPIEDGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEI 115
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 60.9 bits (148), Expect = 5e-11
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 31 EYPVRHGLVEDWDLMERFFEQCIFK--YLRAEPEDHYFLLTEPPLNTPENRE 80
YP+ +G++ +WD ME+ ++ F L PE+H LLTEPPLN P NRE
Sbjct: 72 RYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNRE 123
Score = 32.4 bits (74), Expect = 0.16
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 152 YTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEA 202
TK GFA N P + PS + + + + E+ D ++G+EA
Sbjct: 17 TTKAGFAGNDTPTTVFPSIVGRRR-------DEDSVMEDTEEKDTYVGNEA 60
Score = 27.4 bits (61), Expect = 7.2
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 12 FAVDVGYE-RFLGPEIFFHPEYPV 34
++ G E RF PEI F PE P+
Sbjct: 285 EEIEFGNEERFKAPEILFKPELPI 308
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 59.3 bits (143), Expect = 2e-10
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 31 EYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 80
+YP+ HG+V +WD ME+ + + LR PE+H LLTE PLN NRE
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 53.2 bits (128), Expect = 2e-08
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 32 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGI 85
YP+ HG+V +WD ME+ + + LR PE+H LLTE PLN NRE I
Sbjct: 70 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 52.3 bits (125), Expect = 4e-08
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 32 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAGIYL 87
YP+ HG++E+W+ ME + ++ ++ E+H LLTE PLN +N+E A ++
Sbjct: 76 YPINHGIIENWNDMENIWIH-VYNSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFF 130
Score = 27.6 bits (61), Expect = 6.2
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 152 YTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKG 207
Y K GFA P + PS +G +R+ G + + F+G++A + +G
Sbjct: 23 YIKAGFAGEDVPNLVFPSY--------VGRPKYKRVMAGAVEGNIFVGNKAEEYRG 70
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 40.5 bits (94), Expect = 4e-04
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 33 PVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 80
P+++G++ WD +E + + L PED +T+ P+N+ NRE
Sbjct: 70 PIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRE 117
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain
of the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange
factors, the ROK (repressor, ORF, kinase) family, the
hexokinase family, the FGGY family (which includes
glycerol kinase and similar carbohydrate kinases such
as rhamnulokinase and xylulokinase), the
exopolyphosphatase/guanosine pentaphosphate
phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 37.2 bits (86), Expect = 0.003
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 27 FFHPEYPVRHGLVEDWDLMERFFEQCIFKYLR-AEPEDHYFLLTEPPLNTPENREYTAGI 85
P R G V D D +E + + + LR + E +TEP ENRE
Sbjct: 25 EIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILP 84
Query: 86 YLRV 89
L +
Sbjct: 85 NLLL 88
>gnl|CDD|215531 PLN02981, PLN02981, glucosamine:fructose-6-phosphate
aminotransferase.
Length = 680
Score = 34.0 bits (78), Expect = 0.058
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 130 PRPSAYKADALPTNLTRLAYRRYTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTK 189
PR + + L L RL YR Y G A + +P S + +E KI + +R + +
Sbjct: 13 PRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKI-ESLVRSVYE 71
Query: 190 GV--EDLDFFIGDEAF 203
V DL+ D F
Sbjct: 72 EVAETDLN---LDLVF 84
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 27.0 bits (60), Expect = 7.9
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 70 EPPLNTPENREYTAGIYLRVLTEGTITAKVLSSRNQREKED---RIGKSQPFRE 120
E + T E E + +TE +T + +R R ED KS FR
Sbjct: 464 ERRIATAERWELGQRLLDAYMTEAEVTEAEVEARRVRLNEDLSPSWVKSFDFRS 517
>gnl|CDD|222771 PHA00012, I, assembly protein.
Length = 361
Score = 27.1 bits (60), Expect = 8.0
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 114 KSQPFRERTLSVQESNPRPSAYKADALPTNLTRLAYRRYTKLGFAAN 160
KSQP E+ VQ + + S K D L L RL YT++G+A
Sbjct: 270 KSQPKPEQLQLVQAQSQQLSTSKTDKLSELLPRLTINSYTRMGYAVV 316
>gnl|CDD|188076 TIGR00720, sda_mono, L-serine dehydratase, iron-sulfur-dependent,
single chain form. This enzyme is also called serine
deaminase and L-serine dehydratase 1. L-serine
ammonia-lyase converts serine into pyruvate in the
gluconeogenesis pathway from serine. This enzyme is
comprised of a single chain in Escherichia coli,
Mycobacterium tuberculosis, and several other species,
but has separate alpha and beta chains in Bacillus
subtilis and related species. The beta and alpha chains
are homologous to the N-terminal and C-terminal regions,
respectively, but are rather deeply branched in a UPGMA
tree. This enzyme requires iron and dithiothreitol for
activation in vitro, and is a predicted 4Fe-4S protein.
Escherichia coli Pseudomonas aeruginosa have two copies
of this protein [Energy metabolism, Amino acids and
amines, Energy metabolism, Glycolysis/gluconeogenesis].
Length = 450
Score = 27.3 bits (61), Expect = 8.1
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 25 EIFFHPEYPVRHGLVEDWDLMERFFEQCIFKYLRAE 60
E E +R GL W +M ++CI + L E
Sbjct: 195 EKALRGENEIRAGLAHIWHVM----QECIERGLNTE 226
>gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional.
Length = 299
Score = 26.7 bits (59), Expect = 8.8
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 117 PFRERTLSVQESNPRPSAYKADALPTNLTRLAYRRYTKLGFAANKEPQFIIPSAIAIKET 176
P RE T+S+ E+ LP R R Y + E +FI+P+ + +E
Sbjct: 171 PGREMTVSILETEKGFEV-----LPILELRPKRRFYDYVAKYTKGETEFILPAPLNPEEE 225
Query: 177 AKIGDQAIR 185
+ + A++
Sbjct: 226 RLVKETALK 234
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.405
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,456,267
Number of extensions: 1088524
Number of successful extensions: 846
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 32
Length of query: 217
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 124
Effective length of database: 6,812,680
Effective search space: 844772320
Effective search space used: 844772320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)