RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2592
         (217 letters)



>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 158

 Score = 67.4 bits (164), Expect = 7e-15
 Identities = 51/69 (73%), Positives = 56/69 (81%), Gaps = 4/69 (5%)

Query: 19  ERFLGPEIFFHPE----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLN 74
           + F+G E    P     +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLN
Sbjct: 57  DFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLN 116

Query: 75  TPENREYTA 83
           TPENREYTA
Sbjct: 117 TPENREYTA 125



 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 43/60 (71%), Positives = 50/60 (83%)

Query: 152 YTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKGYSVK 211
           YTKLG+A N EPQFIIPS IAIKE+AK+GDQA RR+ KGV+DLDFFIGDEA +   Y+ K
Sbjct: 14  YTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATK 73


>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 140

 Score = 64.3 bits (156), Expect = 5e-14
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 19  ERFLGPEIFFHPE-----YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPL 73
           + ++G E           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PL
Sbjct: 45  DSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL 104

Query: 74  NTPENREYTAGI 85
           N   NRE    I
Sbjct: 105 NPKANREKMTQI 116



 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 152 YTKLGFAANKEPQFIIPSAIAIKETAKIGDQAIRRLTKGVEDLDFFIGDEAFDAKGY 208
             K GFA +  P+ + PS         +G    + +  G+   D ++GDEA   +G 
Sbjct: 10  LVKAGFAGDDAPRAVFPS--------IVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 58


>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 258

 Score = 30.9 bits (69), Expect = 0.085
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 8/63 (12%)

Query: 1   YDGVNQITKQPFAVDVGYERFLGPEIFFHPEYPVRHGLVEDWDLMERFFEQCIFKYLRAE 60
           Y G+N I+K+ F++DVGYERFLGPEIFFHPE+              +   + + + ++  
Sbjct: 96  YTGINAISKKEFSIDVGYERFLGPEIFFHPEF--------ANPDFTQPISEVVDEVIQNC 147

Query: 61  PED 63
           P D
Sbjct: 148 PID 150


>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 190

 Score = 27.4 bits (60), Expect = 0.95
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 14  VDVGYERFLGPEIFFHPE 31
           + VG ERF  PE  F P 
Sbjct: 99  IKVGGERFEAPEALFQPH 116


>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 225

 Score = 26.2 bits (57), Expect = 2.9
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 30/117 (25%)

Query: 14  VDVGYERFLGPEIFFHPEYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPL 73
           + +G ERF  PE  F P +           +      +  +  +     D          
Sbjct: 102 ITIGNERFRCPETLFQPSF---------IGMESAGIHETTYNSIMKCDIDIR-------- 144

Query: 74  NTPENREYTAGIYLRVLTEGTITAKVLSSRNQREKEDRIGKSQPFR-----ERTLSV 125
                ++  A     V++ GT     ++ R Q+E       +   +     ER  SV
Sbjct: 145 -----KDLYANN---VMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 193


>d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis
           [TaxId: 1423]}
          Length = 182

 Score = 25.4 bits (55), Expect = 4.3
 Identities = 4/15 (26%), Positives = 5/15 (33%)

Query: 83  AGIYLRVLTEGTITA 97
            GI   V   G +  
Sbjct: 158 RGIVCIVERPGAVYT 172


>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli
           [TaxId: 562]}
          Length = 233

 Score = 25.3 bits (55), Expect = 5.2
 Identities = 4/14 (28%), Positives = 7/14 (50%)

Query: 84  GIYLRVLTEGTITA 97
           G    V+  G ++A
Sbjct: 151 GWLYSVIAPGKVSA 164


>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 168

 Score = 24.5 bits (53), Expect = 8.6
 Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 3/67 (4%)

Query: 13  AVDVGYERFLGPEIF-FHPEYP-VRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTE 70
           A+ V        E+     ++   R    E  ++     +  +        ++  F   E
Sbjct: 98  AIRVHVRNSFMDELSTRASDFFRYRKQGYEPSEIPAGAIDPVLEWISSL-EDEEIFEYRE 156

Query: 71  PPLNTPE 77
               T E
Sbjct: 157 IDGFTFE 163


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 818,343
Number of extensions: 37953
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 12
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)