Query psy2593
Match_columns 139
No_of_seqs 107 out of 1068
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 20:08:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0677|consensus 99.9 8E-27 1.7E-31 189.8 5.4 103 34-137 62-238 (389)
2 KOG0676|consensus 99.9 1.4E-24 3E-29 183.2 6.5 90 39-128 65-226 (372)
3 PTZ00452 actin; Provisional 99.9 4.6E-22 9.9E-27 167.5 8.9 96 34-129 61-230 (375)
4 PTZ00466 actin-like protein; P 99.8 5E-21 1.1E-25 161.5 8.1 94 34-128 68-235 (380)
5 PTZ00281 actin; Provisional 99.8 8.6E-21 1.9E-25 159.5 8.8 96 34-129 62-231 (376)
6 PTZ00280 Actin-related protein 99.8 1.8E-19 3.9E-24 152.9 9.4 61 34-94 63-123 (414)
7 PTZ00004 actin-2; Provisional 99.8 3.9E-19 8.4E-24 149.4 8.4 96 34-129 62-231 (378)
8 KOG0678|consensus 99.7 6E-18 1.3E-22 140.8 4.5 105 34-138 67-253 (415)
9 KOG0679|consensus 99.6 3.7E-16 7.9E-21 132.0 5.7 80 8-94 48-127 (426)
10 smart00268 ACTIN Actin. ACTIN 99.6 3.7E-15 8.1E-20 123.9 8.3 95 35-129 57-225 (373)
11 cd00012 ACTIN Actin; An ubiqui 99.5 3.4E-14 7.3E-19 118.3 8.1 90 37-126 59-222 (371)
12 KOG0681|consensus 99.5 1.9E-14 4.1E-19 125.9 6.7 93 38-131 80-252 (645)
13 COG5277 Actin and related prot 99.5 3.1E-14 6.8E-19 123.0 6.4 59 36-94 67-127 (444)
14 KOG0680|consensus 99.5 9.8E-14 2.1E-18 115.6 6.1 97 35-131 54-234 (400)
15 PF00022 Actin: Actin; InterP 99.5 9.6E-14 2.1E-18 115.8 5.9 61 34-94 55-115 (393)
16 PRK13929 rod-share determining 98.8 4.6E-09 1E-13 87.2 6.0 59 36-94 58-119 (335)
17 PRK13930 rod shape-determining 98.7 2.5E-08 5.5E-13 81.8 6.0 59 36-94 62-121 (335)
18 TIGR00904 mreB cell shape dete 98.7 3.2E-08 6.9E-13 81.7 5.9 59 36-94 60-119 (333)
19 PRK13927 rod shape-determining 98.6 1.2E-07 2.5E-12 78.1 6.4 58 35-94 58-116 (334)
20 PRK13928 rod shape-determining 97.4 0.0003 6.5E-09 58.2 5.8 58 36-94 57-116 (336)
21 PF06723 MreB_Mbl: MreB/Mbl pr 96.5 0.0049 1.1E-07 51.8 5.4 60 35-94 54-114 (326)
22 KOG0797|consensus 90.8 0.35 7.7E-06 43.4 4.3 50 34-83 175-237 (618)
23 TIGR02529 EutJ ethanolamine ut 78.9 3.3 7.2E-05 32.9 4.1 55 38-94 25-82 (239)
24 COG1077 MreB Actin-like ATPase 78.4 5.6 0.00012 33.9 5.5 58 37-94 63-122 (342)
25 TIGR01568 A_thal_3678 uncharac 68.6 2.7 5.8E-05 27.7 1.0 19 45-63 24-42 (66)
26 PF04844 Ovate: Transcriptiona 53.8 5.5 0.00012 25.6 0.5 27 48-78 20-47 (59)
27 TIGR03367 queuosine_QueD queuo 43.6 48 0.001 22.4 4.0 60 11-83 9-74 (92)
28 KOG1268|consensus 41.4 24 0.00052 32.3 2.7 33 28-60 97-129 (670)
29 PRK13669 hypothetical protein; 41.0 23 0.00049 24.0 2.0 41 19-67 32-72 (78)
30 TIGR00039 6PTHBS 6-pyruvoyl te 38.6 68 0.0015 22.9 4.3 62 9-82 9-76 (124)
31 PF14369 zf-RING_3: zinc-finge 38.5 15 0.00033 20.9 0.7 12 26-37 1-12 (35)
32 PRK11586 napB nitrate reductas 36.3 23 0.00049 26.9 1.5 30 17-46 104-139 (149)
33 PF07293 DUF1450: Protein of u 32.1 45 0.00099 22.4 2.3 40 20-67 33-72 (78)
34 KOG4759|consensus 30.1 1.3E+02 0.0028 24.9 5.1 56 34-94 139-195 (263)
35 cd00470 PTPS 6-pyruvoyl tetrah 29.9 79 0.0017 23.0 3.5 45 30-79 33-85 (135)
36 PF02201 SWIB: SWIB/MDM2 domai 24.7 85 0.0018 20.4 2.6 35 48-83 19-53 (76)
37 PF13812 PPR_3: Pentatricopept 21.0 1.3E+02 0.0028 15.2 2.5 20 50-71 15-34 (34)
No 1
>KOG0677|consensus
Probab=99.93 E-value=8e-27 Score=189.76 Aligned_cols=103 Identities=31% Similarity=0.454 Sum_probs=95.2
Q ss_pred CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593 34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE------------------- 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE------------------- 94 (139)
-|..|++.|||++|+|.|||+|+++|+|+|.++|+++|.++.||+||||+||.++||||.|
T Consensus 62 lRs~L~i~YPmeNGivrnwddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVL 141 (389)
T KOG0677|consen 62 LRSLLDINYPMENGIVRNWDDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVL 141 (389)
T ss_pred HHHHHhcCCccccccccChHHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593 95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC 119 (139)
Q Consensus 95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa 119 (139)
+||.|..++|.++||.|||++|||+
T Consensus 142 tLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYis 221 (389)
T KOG0677|consen 142 TLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYIS 221 (389)
T ss_pred HHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEe
Confidence 5888999999999999999999999
Q ss_pred cCHHHHHHhhcCCCCCcc
Q psy2593 120 PDIAKEFAKYDADPGKWM 137 (139)
Q Consensus 120 ~Dy~~E~~~~~~~~~~~~ 137 (139)
-|++.|.+++.+ .+.++
T Consensus 222 Yd~e~e~kLalE-TTvLv 238 (389)
T KOG0677|consen 222 YDLELEQKLALE-TTVLV 238 (389)
T ss_pred echhhhhHhhhh-heeee
Confidence 999999877644 34443
No 2
>KOG0676|consensus
Probab=99.90 E-value=1.4e-24 Score=183.23 Aligned_cols=90 Identities=36% Similarity=0.643 Sum_probs=85.8
Q ss_pred eeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc------------------------
Q psy2593 39 FYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE------------------------ 94 (139)
Q Consensus 39 ~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE------------------------ 94 (139)
.+++||++|+|+|||+||.||.|+|.++|++.|++||||+||||++|+++||+|+|
T Consensus 65 ~l~~Pie~Giv~~wd~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavlya~g~ 144 (372)
T KOG0676|consen 65 TLKYPIERGIVTDWDDMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVLYASGR 144 (372)
T ss_pred cccCccccccccchHHHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHHHHcCC
Confidence 67999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------------------------cCcccCCcChHHHHHHhhhhccccccCHHHHH
Q psy2593 95 ------------------------------------------------REIGIPPEQSLETAKAIKERYSYICPDIAKEF 126 (139)
Q Consensus 95 ------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa~Dy~~E~ 126 (139)
.|++|.+..+++++++|||++|||++||++|+
T Consensus 145 ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~ 224 (372)
T KOG0676|consen 145 TTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEE 224 (372)
T ss_pred eeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhh
Confidence 36678889999999999999999999999998
Q ss_pred Hh
Q psy2593 127 AK 128 (139)
Q Consensus 127 ~~ 128 (139)
..
T Consensus 225 ~~ 226 (372)
T KOG0676|consen 225 ET 226 (372)
T ss_pred hc
Confidence 75
No 3
>PTZ00452 actin; Provisional
Probab=99.87 E-value=4.6e-22 Score=167.49 Aligned_cols=96 Identities=25% Similarity=0.414 Sum_probs=86.7
Q ss_pred CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593 34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE------------------- 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE------------------- 94 (139)
.++.+++++||++|+|+|||.||.+|+|+|.++|+++|+++|||+|||+++++.+|++|+|
T Consensus 61 ~~~~~~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~l 140 (375)
T PTZ00452 61 KRGVLAIKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVL 140 (375)
T ss_pred cccCcEEcccCcCCEEcCHHHHHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHH
Confidence 5778999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593 95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC 119 (139)
Q Consensus 95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa 119 (139)
+|+.+.+..+.+++++|||++|||+
T Consensus 141 slya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~ 220 (375)
T PTZ00452 141 SLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTA 220 (375)
T ss_pred HHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccc
Confidence 2334445568999999999999999
Q ss_pred cCHHHHHHhh
Q psy2593 120 PDIAKEFAKY 129 (139)
Q Consensus 120 ~Dy~~E~~~~ 129 (139)
.||.+|++..
T Consensus 221 ~d~~~e~~~~ 230 (375)
T PTZ00452 221 LDPQDEKRIY 230 (375)
T ss_pred CcHHHHHHHh
Confidence 9999998643
No 4
>PTZ00466 actin-like protein; Provisional
Probab=99.84 E-value=5e-21 Score=161.54 Aligned_cols=94 Identities=30% Similarity=0.486 Sum_probs=85.5
Q ss_pred CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593 34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE------------------- 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE------------------- 94 (139)
.++.+.+++||++|+|+|||.||.||+|+| ++|+++|.++||||||++++|+..|++|+|
T Consensus 68 ~~~~~~l~~Pi~~G~v~dwd~~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~l 146 (380)
T PTZ00466 68 YRGLLKVTYPINHGIIENWNDMENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAIL 146 (380)
T ss_pred hCcCceeCccccCCeECCHHHHHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHH
Confidence 477889999999999999999999999999 789999999999999999999999999999
Q ss_pred -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593 95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC 119 (139)
Q Consensus 95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa 119 (139)
.|+.+.+..+.+++++|||++|||+
T Consensus 147 sl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~ 226 (380)
T PTZ00466 147 SLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVS 226 (380)
T ss_pred HHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEec
Confidence 2334556778999999999999999
Q ss_pred cCHHHHHHh
Q psy2593 120 PDIAKEFAK 128 (139)
Q Consensus 120 ~Dy~~E~~~ 128 (139)
.||.+|++.
T Consensus 227 ~d~~~e~~~ 235 (380)
T PTZ00466 227 FNMNKEKNS 235 (380)
T ss_pred CChHHHHhh
Confidence 999998764
No 5
>PTZ00281 actin; Provisional
Probab=99.83 E-value=8.6e-21 Score=159.49 Aligned_cols=96 Identities=33% Similarity=0.595 Sum_probs=87.0
Q ss_pred CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593 34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE------------------- 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE------------------- 94 (139)
.++.+++++||++|+|+|||.+|.+|+|+|.+.|+++|+++|||+|||+++++..|++|+|
T Consensus 62 ~~~~~~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~l 141 (376)
T PTZ00281 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 141 (376)
T ss_pred cccCcEEeccCcCCEEcCHHHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHH
Confidence 5678999999999999999999999999998899999999999999999999999999999
Q ss_pred -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593 95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC 119 (139)
Q Consensus 95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa 119 (139)
+|+.|.+..+.+++++|||++|||+
T Consensus 142 s~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~ 221 (376)
T PTZ00281 142 SLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVA 221 (376)
T ss_pred HHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEec
Confidence 2334555678999999999999999
Q ss_pred cCHHHHHHhh
Q psy2593 120 PDIAKEFAKY 129 (139)
Q Consensus 120 ~Dy~~E~~~~ 129 (139)
.||.+|++..
T Consensus 222 ~d~~~~~~~~ 231 (376)
T PTZ00281 222 LDFEAEMQTA 231 (376)
T ss_pred CCchHHHHhh
Confidence 9999988754
No 6
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.80 E-value=1.8e-19 Score=152.92 Aligned_cols=61 Identities=72% Similarity=1.362 Sum_probs=58.1
Q ss_pred CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593 34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
.+..+++++||++|+|+|||.||.+|+|+|.++|+++|.++|||+|||+++|+..|++++|
T Consensus 63 ~~~~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e 123 (414)
T PTZ00280 63 ASKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAE 123 (414)
T ss_pred CcCCcEEecCccCCEeCCHHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHH
Confidence 3567999999999999999999999999998899999999999999999999999999999
No 7
>PTZ00004 actin-2; Provisional
Probab=99.78 E-value=3.9e-19 Score=149.45 Aligned_cols=96 Identities=34% Similarity=0.600 Sum_probs=85.4
Q ss_pred CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593 34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE------------------- 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE------------------- 94 (139)
.++.+++++|+++|+|+|||.+|.+|+|+|.++|+++|.++|||+|||+++|+..|++++|
T Consensus 62 ~~~~~~l~~Pi~~G~i~d~d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~l 141 (378)
T PTZ00004 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVL 141 (378)
T ss_pred ccccceEcccCcCCEEcCHHHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHH
Confidence 4567899999999999999999999999998899999999999999999999999999999
Q ss_pred -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593 95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC 119 (139)
Q Consensus 95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa 119 (139)
+|+.+.+..+.+++++|||++|||+
T Consensus 142 s~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~ 221 (378)
T PTZ00004 142 SLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIA 221 (378)
T ss_pred HHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeec
Confidence 1223445567899999999999999
Q ss_pred cCHHHHHHhh
Q psy2593 120 PDIAKEFAKY 129 (139)
Q Consensus 120 ~Dy~~E~~~~ 129 (139)
.||.+|++..
T Consensus 222 ~d~~~~~~~~ 231 (378)
T PTZ00004 222 LDFDEEMGNS 231 (378)
T ss_pred CCHHHHHhhh
Confidence 9999998643
No 8
>KOG0678|consensus
Probab=99.71 E-value=6e-18 Score=140.85 Aligned_cols=105 Identities=79% Similarity=1.395 Sum_probs=94.1
Q ss_pred CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593 34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE------------------- 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE------------------- 94 (139)
..+.+++.+|+++|.|.|||.||.+|+..+.+.|..+|++|-.||||||+|++++|+.++|
T Consensus 67 ~~~~ysl~ypiRhg~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavL 146 (415)
T KOG0678|consen 67 DATTYSLKYPIRHGQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVL 146 (415)
T ss_pred hhcccccccceeccccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHH
Confidence 3568999999999999999999999999988999999999999999999999999999999
Q ss_pred ---------------------------------------------------------------cCcccCCcChHHHHHHh
Q psy2593 95 ---------------------------------------------------------------REIGIPPEQSLETAKAI 111 (139)
Q Consensus 95 ---------------------------------------------------------------~G~~f~t~~~~~~v~~I 111 (139)
++..++.....++.+.|
T Consensus 147 ALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~i 226 (415)
T KOG0678|consen 147 ALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAI 226 (415)
T ss_pred HHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHH
Confidence 12234456678899999
Q ss_pred hhhccccccCHHHHHHhhcCCCCCccc
Q psy2593 112 KERYSYICPDIAKEFAKYDADPGKWMR 138 (139)
Q Consensus 112 KE~~CyVa~Dy~~E~~~~~~~~~~~~~ 138 (139)
||++||+++|..+|....+.+|++|.+
T Consensus 227 Ke~ycy~cPdivkef~k~d~ep~K~ik 253 (415)
T KOG0678|consen 227 KEKYCYTCPDIVKEFAKYDREPAKWIK 253 (415)
T ss_pred HhhhcccCcHHHHHHHHhccCHHHHHH
Confidence 999999999999999888888888754
No 9
>KOG0679|consensus
Probab=99.62 E-value=3.7e-16 Score=131.99 Aligned_cols=80 Identities=34% Similarity=0.558 Sum_probs=74.3
Q ss_pred cCCCcccccccccCCCCCCccccCCCCCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChh
Q psy2593 8 NKNSSAHRRENIDRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPE 87 (139)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~ 87 (139)
+.+....+++|||++-.+ .+|+++++..|+++|+|.|||.++.+|+|.|.++|+++|.+||+|||||++|+++
T Consensus 48 ~~d~~~~~~~y~~~~ai~-------~pr~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~ 120 (426)
T KOG0679|consen 48 DGDAEDKKGYYVDENAIH-------VPRPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRA 120 (426)
T ss_pred cCccccccceEeechhcc-------CCCCCCeeccchhcCCcccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHH
Confidence 445566677899999988 5699999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q psy2593 88 NREYTAE 94 (139)
Q Consensus 88 ~Rek~aE 94 (139)
+|+|++|
T Consensus 121 ~Rek~~E 127 (426)
T KOG0679|consen 121 NREKLTE 127 (426)
T ss_pred HHHHHHH
Confidence 9999999
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.59 E-value=3.7e-15 Score=123.95 Aligned_cols=95 Identities=40% Similarity=0.691 Sum_probs=82.8
Q ss_pred CCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc--------------------
Q psy2593 35 SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE-------------------- 94 (139)
Q Consensus 35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE-------------------- 94 (139)
++.+.+++|+++|+|.|||.+|.+|+|+|.+.|++.|.++||++|+|++++...|++++|
T Consensus 57 ~~~~~~~~P~~~G~i~d~~~~e~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a 136 (373)
T smart00268 57 RGGLELKYPIEHGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLS 136 (373)
T ss_pred CCCceecCCCcCCEEeCHHHHHHHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHH
Confidence 556689999999999999999999999998789999999999999999999999999999
Q ss_pred -------------cCc-----------------------------------------ccCCcChHHHHHHhhhhcccccc
Q psy2593 95 -------------REI-----------------------------------------GIPPEQSLETAKAIKERYSYICP 120 (139)
Q Consensus 95 -------------~G~-----------------------------------------~f~t~~~~~~v~~IKE~~CyVa~ 120 (139)
.|+ .+....+.+++++|||++|||+.
T Consensus 137 ~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~ 216 (373)
T smart00268 137 LYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAE 216 (373)
T ss_pred HHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecC
Confidence 111 22334578899999999999999
Q ss_pred CHHHHHHhh
Q psy2593 121 DIAKEFAKY 129 (139)
Q Consensus 121 Dy~~E~~~~ 129 (139)
++.+|++..
T Consensus 217 ~~~~~~~~~ 225 (373)
T smart00268 217 DFEKEMKKA 225 (373)
T ss_pred ChHHHHHHh
Confidence 999988654
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.52 E-value=3.4e-14 Score=118.28 Aligned_cols=90 Identities=41% Similarity=0.720 Sum_probs=79.7
Q ss_pred cceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc----------------------
Q psy2593 37 GCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE---------------------- 94 (139)
Q Consensus 37 ~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE---------------------- 94 (139)
.+.+++|+++|.|+|||.++.+|+|+|.+.|.+++.++||++++|++++...|++++|
T Consensus 59 ~~~~~~P~~~G~i~d~~~~e~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~ 138 (371)
T cd00012 59 GLELIYPIEHGIVVDWDDMEKIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLY 138 (371)
T ss_pred ceEEcccccCCEEeCHHHHHHHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHH
Confidence 5899999999999999999999999998888899999999999999999999999999
Q ss_pred -----------cCc-----------------------------------------ccCCcChHHHHHHhhhhccccccCH
Q psy2593 95 -----------REI-----------------------------------------GIPPEQSLETAKAIKERYSYICPDI 122 (139)
Q Consensus 95 -----------~G~-----------------------------------------~f~t~~~~~~v~~IKE~~CyVa~Dy 122 (139)
.|+ .+....+..++++|||++|||+.++
T Consensus 139 ~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~ 218 (371)
T cd00012 139 ASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDI 218 (371)
T ss_pred hcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCH
Confidence 111 1234557899999999999999999
Q ss_pred HHHH
Q psy2593 123 AKEF 126 (139)
Q Consensus 123 ~~E~ 126 (139)
.+++
T Consensus 219 ~~~~ 222 (371)
T cd00012 219 EEEQ 222 (371)
T ss_pred HHHH
Confidence 9886
No 12
>KOG0681|consensus
Probab=99.52 E-value=1.9e-14 Score=125.89 Aligned_cols=93 Identities=24% Similarity=0.256 Sum_probs=81.3
Q ss_pred ceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCC--CCcceEEecCCCCChhhhhhhcc---------------------
Q psy2593 38 CFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEP--EDHYFLLTEPPLNTPENREYTAE--------------------- 94 (139)
Q Consensus 38 l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p--~e~pvLlTEp~~n~~~~Rek~aE--------------------- 94 (139)
...++||++.+|+||+.||+|++|+| .+||+++ .+|||+|||+.+||..+|++|+|
T Consensus 80 s~~rSPFd~nVvtNwel~E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~ 158 (645)
T KOG0681|consen 80 SSPRSPFDRNVVTNWELMEQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSF 158 (645)
T ss_pred ccCCCCCcCCccccHHHHHHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHH
Confidence 45689999999999999999999999 7899998 58999999999999999999999
Q ss_pred ----------------c--------------------------Cc---------------ccCCcChHHHHHHhhhhccc
Q psy2593 95 ----------------R--------------------------EI---------------GIPPEQSLETAKAIKERYSY 117 (139)
Q Consensus 95 ----------------~--------------------------G~---------------~f~t~~~~~~v~~IKE~~Cy 117 (139)
. |+ .|.+..++.-.+.+++.+||
T Consensus 159 ~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcy 238 (645)
T KOG0681|consen 159 YHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCY 238 (645)
T ss_pred hhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhce
Confidence 0 11 13456788899999999999
Q ss_pred cccCHHHHHHhhcC
Q psy2593 118 ICPDIAKEFAKYDA 131 (139)
Q Consensus 118 Va~Dy~~E~~~~~~ 131 (139)
||.||..|+.....
T Consensus 239 is~DY~eei~~~l~ 252 (645)
T KOG0681|consen 239 ISPDYREEIIKILE 252 (645)
T ss_pred eCcchHHHHHHHhh
Confidence 99999999876644
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.50 E-value=3.1e-14 Score=123.01 Aligned_cols=59 Identities=44% Similarity=0.786 Sum_probs=56.5
Q ss_pred CcceeeCcccCCeecCHHHHHHHHHHHHhh--hcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593 36 SGCFYFYPVRHGLVEDWDLMERFFEQCIFK--YLRAEPEDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~--~L~v~p~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
+.+.+++|+++|.|.|||+||.+|+|+|.+ .+...+.+|||++|||+++++++|++++|
T Consensus 67 ~~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e 127 (444)
T COG5277 67 SLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITE 127 (444)
T ss_pred ccceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHH
Confidence 389999999999999999999999999988 68889999999999999999999999999
No 14
>KOG0680|consensus
Probab=99.45 E-value=9.8e-14 Score=115.63 Aligned_cols=97 Identities=23% Similarity=0.397 Sum_probs=82.4
Q ss_pred CCcceeeCcccCCeecCHHHHHHHHHHHHhhh-cCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593 35 SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKY-LRAEPEDHYFLLTEPPLNTPENREYTAE------------------- 94 (139)
Q Consensus 35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~-L~v~p~e~pvLlTEp~~n~~~~Rek~aE------------------- 94 (139)
-..|.++.|+++|+++|||....+|+|+|.+. ++++..++.|++|||.++-++..+.+.|
T Consensus 54 ~ssL~y~rp~erGyLvnW~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~l 133 (400)
T KOG0680|consen 54 ISSLFYRRPHERGYLVNWDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVL 133 (400)
T ss_pred ccceEEeehhhcceeEeehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHh
Confidence 34678899999999999999999999999642 3466789999999999999888888888
Q ss_pred -------------------------cCcccC---------------------------------------CcChHHHHHH
Q psy2593 95 -------------------------REIGIP---------------------------------------PEQSLETAKA 110 (139)
Q Consensus 95 -------------------------~G~~f~---------------------------------------t~~~~~~v~~ 110 (139)
.||+|+ .+.+..+|++
T Consensus 134 va~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNe 213 (400)
T KOG0680|consen 134 VAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMDETYVVNE 213 (400)
T ss_pred cchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccchhhhhhh
Confidence 366542 5778999999
Q ss_pred hhhhccccccCHHHHHHhhcC
Q psy2593 111 IKERYSYICPDIAKEFAKYDA 131 (139)
Q Consensus 111 IKE~~CyVa~Dy~~E~~~~~~ 131 (139)
|||+.||||.||++.|+.+..
T Consensus 214 iKEdvcfVSqnF~~~m~~~~~ 234 (400)
T KOG0680|consen 214 IKEDVCFVSQNFKEDMDIAKT 234 (400)
T ss_pred hhhheEEechhhHHHHHHHhh
Confidence 999999999999999976644
No 15
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.45 E-value=9.6e-14 Score=115.77 Aligned_cols=61 Identities=36% Similarity=0.637 Sum_probs=55.7
Q ss_pred CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593 34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
+++.+.+.+|+++|.|.|||.+|.+|+|+|.+.|++++.++||||+||+++++..|++++|
T Consensus 55 ~~~~~~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e 115 (393)
T PF00022_consen 55 PRSNLELRSPIENGVIVDWDALEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAE 115 (393)
T ss_dssp TGTGEEEEESEETTEESSHHHHHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHH
T ss_pred chhheeeeeeccccccccccccccccccccccccccccccceeeeeccccCCchhhhhhhh
Confidence 4778999999999999999999999999998889999999999999999999999999999
No 16
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.85 E-value=4.6e-09 Score=87.19 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=53.4
Q ss_pred CcceeeCcccCCeecCHHHHHHHHHHHHh---hhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593 36 SGCFYFYPVRHGLVEDWDLMERFFEQCIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~---~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
+.+.+.+|+++|.|.|||.++.+|.+++. ++++..+.++++++|.|+..+..+|+++.+
T Consensus 58 ~~~~~~~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~ 119 (335)
T PRK13929 58 GKIVAVRPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD 119 (335)
T ss_pred CcEEEEecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH
Confidence 46888999999999999999999999996 367777777899999999999999999988
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=98.71 E-value=2.5e-08 Score=81.78 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=49.6
Q ss_pred CcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCC-CCcceEEecCCCCChhhhhhhcc
Q psy2593 36 SGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEP-EDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p-~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
..+.+.+|+++|.|.|||.++.+|+|+|.+.+...+ ..+++++|.|+..+..+|+.+.+
T Consensus 62 ~~~~~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~ 121 (335)
T PRK13930 62 GNIEAIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE 121 (335)
T ss_pred CCeEEeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence 468899999999999999999999999954334334 36789999999999999988877
No 18
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.68 E-value=3.2e-08 Score=81.67 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=50.1
Q ss_pred CcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCc-ceEEecCCCCChhhhhhhcc
Q psy2593 36 SGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDH-YFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~-pvLlTEp~~n~~~~Rek~aE 94 (139)
..+.+.+||.+|+|.|||.++.+|+|+|.+.++.....+ ++++|.|+..+..+|+.+.+
T Consensus 60 ~~~~~~~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~ 119 (333)
T TIGR00904 60 GNIVAIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKE 119 (333)
T ss_pred CCEEEEecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHH
Confidence 578999999999999999999999999977665433333 69999999999999988766
No 19
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.58 E-value=1.2e-07 Score=78.07 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=44.8
Q ss_pred CCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCc-ceEEecCCCCChhhhhhhcc
Q psy2593 35 SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDH-YFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~-pvLlTEp~~n~~~~Rek~aE 94 (139)
.+.+.+.+||++|.|.|||.++.+|.++|.+.++. +.++ .++++.|. ++...++++++
T Consensus 58 ~~~~~~~~pi~~G~i~d~~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~-~~~~~~r~~~~ 116 (334)
T PRK13927 58 PGNIVAIRPMKDGVIADFDVTEKMLKYFIKKVHKN-FRPSPRVVICVPS-GITEVERRAVR 116 (334)
T ss_pred CCCEEEEecCCCCeecCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEeCC-CCCHHHHHHHH
Confidence 36788999999999999999999999999777777 6666 46666664 45555555555
No 20
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.43 E-value=0.0003 Score=58.21 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=44.4
Q ss_pred CcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCC-CCCcc-eEEecCCCCChhhhhhhcc
Q psy2593 36 SGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAE-PEDHY-FLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~-p~e~p-vLlTEp~~n~~~~Rek~aE 94 (139)
+.+.+.+|+.+|.|.|||.++.+|.|++ +++... +.++| +++|.|...+..+|+.+.+
T Consensus 57 ~~~~~~~pi~~G~i~d~~~~~~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~ 116 (336)
T PRK13928 57 GNIVAIRPLRDGVIADYDVTEKMLKYFI-NKACGKRFFSKPRIMICIPTGITSVEKRAVRE 116 (336)
T ss_pred CCEEEEccCCCCeEecHHHHHHHHHHHH-HHHhccCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 4677889999999999999999999998 445433 55777 8889976665555554444
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=96.53 E-value=0.0049 Score=51.80 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=44.9
Q ss_pred CCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCC-CCcceEEecCCCCChhhhhhhcc
Q psy2593 35 SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEP-EDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p-~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
...+.+.+|+++|+|.|.+.++.++.+.+.+-++-.. ....+++.-|.-.+...|+.+.+
T Consensus 54 p~~i~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 54 PDNIEVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred CCccEEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 3578999999999999999999999999965555323 44568889999888888888888
No 22
>KOG0797|consensus
Probab=90.83 E-value=0.35 Score=43.39 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=37.6
Q ss_pred CCCcceeeCcccCCeec----------CHHHHHHHHHHHHhhhcCCCCC---CcceEEecCCC
Q psy2593 34 HSSGCFYFYPVRHGLVE----------DWDLMERFFEQCIFKYLRAEPE---DHYFLLTEPPL 83 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~----------nWD~~E~iw~~~f~~~L~v~p~---e~pvLlTEp~~ 83 (139)
+-+.+.+.+||++|..- --.+++.||+|++.+.|.|.+. .+.+++.-|-.
T Consensus 175 ~i~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~ 237 (618)
T KOG0797|consen 175 KISPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDT 237 (618)
T ss_pred cCCcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecch
Confidence 33468889999999521 2467899999999999999875 56777776644
No 23
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=78.89 E-value=3.3 Score=32.90 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=42.0
Q ss_pred ceeeCcccCCeecCHHHHHHHHHHHHh---hhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593 38 CFYFYPVRHGLVEDWDLMERFFEQCIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 38 l~l~~Pi~~G~V~nWD~~E~iw~~~f~---~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
.....|+.+|.|.|.|.++.++.++.. ..++. .-..++++-|...+..+|+.+.+
T Consensus 25 ~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~--~~~~vvisVP~~~~~~~r~a~~~ 82 (239)
T TIGR02529 25 MQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI--ELTHAATAIPPGTIEGDPKVIVN 82 (239)
T ss_pred ecccccccCCeEEEhHHHHHHHHHHHHHHHHHhCC--CcCcEEEEECCCCCcccHHHHHH
Confidence 344789999999999999999999884 23332 23578999998877777766665
No 24
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=78.40 E-value=5.6 Score=33.91 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=42.3
Q ss_pred cceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCC--CCcceEEecCCCCChhhhhhhcc
Q psy2593 37 GCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEP--EDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 37 ~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p--~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
+....+|+.+|+|-|+|..|.++.|...+..+=.. ..-.|++--|...+...|+.+.|
T Consensus 63 ni~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~e 122 (342)
T COG1077 63 NIVAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKE 122 (342)
T ss_pred CceEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHH
Confidence 68889999999999999999999998743322121 22336666677777777777776
No 25
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=68.62 E-value=2.7 Score=27.69 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=15.8
Q ss_pred cCCeecCHHHHHHHHHHHH
Q psy2593 45 RHGLVEDWDLMERFFEQCI 63 (139)
Q Consensus 45 ~~G~V~nWD~~E~iw~~~f 63 (139)
.+|+-.+|+.+|.++...+
T Consensus 24 ~~~i~~~w~~LeeLL~cYL 42 (66)
T TIGR01568 24 ERELEADWKELEELLACYL 42 (66)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 4576689999999999776
No 26
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=53.77 E-value=5.5 Score=25.58 Aligned_cols=27 Identities=26% Similarity=0.603 Sum_probs=18.3
Q ss_pred eecCHHHHHHHHHHHHhhhcCCCC-CCcceEE
Q psy2593 48 LVEDWDLMERFFEQCIFKYLRAEP-EDHYFLL 78 (139)
Q Consensus 48 ~V~nWD~~E~iw~~~f~~~L~v~p-~e~pvLl 78 (139)
.+.+|+.+|.++...+ .+++ ..|++|+
T Consensus 20 ~i~~~~~LeeLL~cYL----~LN~~~~H~~Iv 47 (59)
T PF04844_consen 20 GIRDWDDLEELLACYL----SLNSPEHHKFIV 47 (59)
T ss_pred CCCCHHHHHHHHHHHH----HhCChhhhhHHH
Confidence 3569999999999766 2344 3455543
No 27
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=43.64 E-value=48 Score=22.44 Aligned_cols=60 Identities=27% Similarity=0.372 Sum_probs=37.6
Q ss_pred CcccccccccCCCCCCccccCCCCCCccee----eCcc--cCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCC
Q psy2593 11 SSAHRRENIDRDCSGQWRWCHPCHSSGCFY----FYPV--RHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPL 83 (139)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l----~~Pi--~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~ 83 (139)
+.|||...-. | -|...+...+.+ .-+. ..|+|+|+..++.++..+. +.| ||.+|...+++
T Consensus 9 ~aaH~l~~~~----g---~c~~lHGH~y~v~v~~~~~~l~~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~ 74 (92)
T TIGR03367 9 DAAHRLPGYP----G---KCANLHGHTYKVEVTVSGEVLDEAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGL 74 (92)
T ss_pred EeeeEcCCCC----C---CccCcCCccEEEEEEEEEeecCCccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCC
Confidence 5677764332 2 366666554443 3332 4799999999999998765 333 56666655555
No 28
>KOG1268|consensus
Probab=41.37 E-value=24 Score=32.26 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=25.6
Q ss_pred cccCCCCCCcceeeCcccCCeecCHHHHHHHHH
Q psy2593 28 RWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFE 60 (139)
Q Consensus 28 ~~~~~~~r~~l~l~~Pi~~G~V~nWD~~E~iw~ 60 (139)
.=|||.......-.-.+.||+|+|+.++..++.
T Consensus 97 ~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~ 129 (670)
T KOG1268|consen 97 VNCHPHRSDPSNEFVVVHNGIITNFKELKALLE 129 (670)
T ss_pred cCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHH
Confidence 349999766555556789999999999877765
No 29
>PRK13669 hypothetical protein; Provisional
Probab=41.05 E-value=23 Score=24.04 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=32.6
Q ss_pred ccCCCCCCccccCCCCCCcceeeCcccCCeecCHHHHHHHHHHHHhhhc
Q psy2593 19 IDRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYL 67 (139)
Q Consensus 19 ~~~~~~~~~~~~~~~~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L 67 (139)
|.-+|.+ ||+++.+.-+.+ .+|.++--+.-+++.+.+. ..+
T Consensus 32 ie~gCls---~CG~C~~~~FAl----Vng~~V~a~t~eeL~~kI~-~~i 72 (78)
T PRK13669 32 LEYGCLG---YCGICSEGLFAL----VNGEVVEGETPEELVENIY-AHL 72 (78)
T ss_pred EEcchhh---hCcCcccCceEE----ECCeEeecCCHHHHHHHHH-HHH
Confidence 5567887 899998876665 7899988888999998887 444
No 30
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=38.63 E-value=68 Score=22.85 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=38.4
Q ss_pred CCCcccccccccCCCCCCccccCCCCCCccee----eCcc--cCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCC
Q psy2593 9 KNSSAHRRENIDRDCSGQWRWCHPCHSSGCFY----FYPV--RHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPP 82 (139)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l----~~Pi--~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~ 82 (139)
+=++|||...- +.=|.+.+...+.+ .-+. +.|+|+|+..++.++...+...| ||.+|...++
T Consensus 9 ~F~aaH~l~~~-------~g~c~~lHGH~y~v~v~v~g~~~~~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~ 76 (124)
T TIGR00039 9 SFSAAHRLPGH-------EGKCGNLHGHSYKVDVEVSGERDPKTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVN 76 (124)
T ss_pred EEeCCCCcCCC-------CCCCCCccCCcEEEEEEEEEeeCCCceEEEEHHHHHHHHHHHhccCC-----CCceeccCCC
Confidence 34678886432 22366666665443 3322 57999999999999988763223 5666665444
No 31
>PF14369 zf-RING_3: zinc-finger
Probab=38.54 E-value=15 Score=20.87 Aligned_cols=12 Identities=42% Similarity=1.033 Sum_probs=9.2
Q ss_pred CccccCCCCCCc
Q psy2593 26 QWRWCHPCHSSG 37 (139)
Q Consensus 26 ~~~~~~~~~r~~ 37 (139)
+.+|||++.|..
T Consensus 1 ~~ywCh~C~~~V 12 (35)
T PF14369_consen 1 QRYWCHQCNRFV 12 (35)
T ss_pred CCEeCccCCCEe
Confidence 468999998664
No 32
>PRK11586 napB nitrate reductase cytochrome C550 subunit; Provisional
Probab=36.25 E-value=23 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=22.9
Q ss_pred ccccCCC------CCCccccCCCCCCcceeeCcccC
Q psy2593 17 ENIDRDC------SGQWRWCHPCHSSGCFYFYPVRH 46 (139)
Q Consensus 17 ~~~~~~~------~~~~~~~~~~~r~~l~l~~Pi~~ 46 (139)
-+.|||| ++.-|||-+++.|......-+++
T Consensus 104 Hf~DR~Gk~l~~vsprRYfCtQCHVPQada~PLV~N 139 (149)
T PRK11586 104 HFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGN 139 (149)
T ss_pred ceecCCCCCccccCccceeeccccCccccCccCCCC
Confidence 3567877 67889999999999988643343
No 33
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=32.10 E-value=45 Score=22.45 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=31.6
Q ss_pred cCCCCCCccccCCCCCCcceeeCcccCCeecCHHHHHHHHHHHHhhhc
Q psy2593 20 DRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYL 67 (139)
Q Consensus 20 ~~~~~~~~~~~~~~~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L 67 (139)
-.+|.| ||+++...-+.+ .+|.++--+.-+.+.+.+. +++
T Consensus 33 e~gCl~---~Cg~C~~~pFAl----VnG~~V~A~t~eeL~~kI~-~~i 72 (78)
T PF07293_consen 33 EYGCLS---YCGPCAKKPFAL----VNGEIVAAETAEELLEKIK-EKI 72 (78)
T ss_pred EcChhh---hCcCCCCCccEE----ECCEEEecCCHHHHHHHHH-HHH
Confidence 367887 899998876665 6799998899999998886 444
No 34
>KOG4759|consensus
Probab=30.15 E-value=1.3e+02 Score=24.92 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=42.3
Q ss_pred CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCC-CcceEEecCCCCChhhhhhhcc
Q psy2593 34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPE-DHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~-e~pvLlTEp~~n~~~~Rek~aE 94 (139)
+.|..-+..|++. -+++..+..-+....|++.|+ +..+|..-.|-.+.+.|++++.
T Consensus 139 K~p~~ilIn~~d~-----p~~ikai~kAI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK 195 (263)
T KOG4759|consen 139 KGPQTILINPFDF-----PVDIKAILKAIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAK 195 (263)
T ss_pred CCCceEEEecccC-----chHHHHHHHHHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHH
Confidence 4667777788873 235667777777788999996 5667777777778999999998
No 35
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=29.90 E-value=79 Score=23.04 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=26.8
Q ss_pred cC--CCCCCcc----eeeCccc--CCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEe
Q psy2593 30 CH--PCHSSGC----FYFYPVR--HGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLT 79 (139)
Q Consensus 30 ~~--~~~r~~l----~l~~Pi~--~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlT 79 (139)
|. ..+...+ .+.-+.. .|+|+|+..++.++...+...| ||.+|..
T Consensus 33 C~~~~lHGH~y~v~v~v~g~~~~~~GmviDF~~lk~~l~~~i~~~l-----DH~~Ln~ 85 (135)
T cd00470 33 CNNPNGHGHNYKVEVTVRGEIDPVTGMVMNLTDLKKAIEEAIMKPL-----DHKNLDD 85 (135)
T ss_pred CCCCCccCCCeEEEEEEEEeEcCCCCEEEEHHHHHHHHHHHHHhhc-----CCceecc
Confidence 55 4555543 3443443 5999999999988755332333 4555544
No 36
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=24.75 E-value=85 Score=20.44 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=24.5
Q ss_pred eecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCC
Q psy2593 48 LVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPL 83 (139)
Q Consensus 48 ~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~ 83 (139)
..+--+.+..||+|+-.+.| .+|++..+++.+..+
T Consensus 19 ~~sr~~v~~~lw~YIk~~~L-~dp~~k~~I~cD~~L 53 (76)
T PF02201_consen 19 ELSRSEVVKRLWQYIKENNL-QDPKDKRIIICDEKL 53 (76)
T ss_dssp CEEHHHHHHHHHHHHHHTTS-BESSSTTEEE-TTSH
T ss_pred CCCHHHHHHHHHHHHHHhcC-CCcccCceEecCHHH
Confidence 35556788999999976666 477777777766544
No 37
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.04 E-value=1.3e+02 Score=15.18 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=14.8
Q ss_pred cCHHHHHHHHHHHHhhhcCCCC
Q psy2593 50 EDWDLMERFFEQCIFKYLRAEP 71 (139)
Q Consensus 50 ~nWD~~E~iw~~~f~~~L~v~p 71 (139)
-+|+....+++.+- +.||.|
T Consensus 15 g~~~~a~~~~~~M~--~~gv~P 34 (34)
T PF13812_consen 15 GDPDAALQLFDEMK--EQGVKP 34 (34)
T ss_pred CCHHHHHHHHHHHH--HhCCCC
Confidence 47888999999875 356665
Done!