Query psy2593
Match_columns 139
No_of_seqs 107 out of 1068
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 20:08:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_A Actin-related protein 3 99.8 1.3E-20 4.3E-25 159.9 6.2 59 36-94 86-144 (427)
2 3qb0_A Actin-related protein 4 99.8 1.2E-19 4.2E-24 157.0 8.9 61 34-94 74-135 (498)
3 4fo0_A Actin-related protein 8 99.7 8.7E-19 3E-23 151.5 5.1 61 34-94 145-219 (593)
4 1k8k_B ARP2, actin-like protei 99.7 1.1E-18 3.8E-23 145.3 3.5 95 35-129 65-234 (394)
5 2fxu_A Alpha-actin-1, actin, a 99.7 1.3E-17 4.5E-22 137.6 8.0 95 35-129 62-230 (375)
6 4am6_A Actin-like protein ARP8 99.7 1.3E-17 4.4E-22 148.0 6.1 79 14-94 146-242 (655)
7 1k8k_A ARP3, actin-like protei 99.6 7.9E-16 2.7E-20 128.0 8.4 58 37-94 71-128 (418)
8 1jce_A ROD shape-determining p 97.6 9.3E-05 3.2E-09 59.3 6.0 58 37-94 58-116 (344)
9 3h1q_A Ethanolamine utilizatio 92.6 0.13 4.4E-06 39.2 4.4 56 39-94 57-113 (272)
10 2dj6_A Hypothetical protein PH 47.9 18 0.00061 24.5 3.5 45 11-63 12-60 (115)
11 4cpa_I Metallocarboxypeptidase 33.6 12 0.0004 21.0 0.5 13 20-33 15-27 (38)
12 2v7y_A Chaperone protein DNAK; 32.3 21 0.00073 29.8 2.2 48 43-94 74-130 (509)
13 1jni_A NAPB;, diheme cytochrom 25.8 27 0.00091 24.6 1.4 29 18-46 79-113 (123)
14 1tfi_A Transcriptional elongat 25.0 18 0.00061 21.3 0.3 16 15-30 35-50 (50)
15 1ogy_B Diheme cytochrome C NAP 22.8 41 0.0014 23.9 1.9 29 18-46 80-114 (130)
16 2fsj_A Hypothetical protein TA 20.8 47 0.0016 26.2 2.2 52 42-94 88-142 (346)
No 1
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.81 E-value=1.3e-20 Score=159.88 Aligned_cols=59 Identities=71% Similarity=1.273 Sum_probs=57.2
Q ss_pred CcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593 36 SGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
+.+.+++||++|+|+|||+||.+|+|+|.++|+++|.+||||||||+++|+.+|++|+|
T Consensus 86 ~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~e 144 (427)
T 3dwl_A 86 AGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAE 144 (427)
T ss_dssp HHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHH
T ss_pred cCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999
No 2
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-19 Score=156.98 Aligned_cols=61 Identities=28% Similarity=0.333 Sum_probs=59.1
Q ss_pred CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCc-ceEEecCCCCChhhhhhhcc
Q psy2593 34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDH-YFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~-pvLlTEp~~n~~~~Rek~aE 94 (139)
.|+.+.+++||++|+|+|||+||.||+|+|.+.|++.|.++ |||||||+++|+.+|++|+|
T Consensus 74 ~r~~l~l~~Pi~~GvI~dwd~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~e 135 (498)
T 3qb0_A 74 PRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLE 135 (498)
T ss_dssp CCTTEEEEESEETTEESCHHHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHH
T ss_pred CcCceEEeccCcCCEEccHHHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHH
Confidence 57899999999999999999999999999988999999999 99999999999999999999
No 3
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=99.74 E-value=8.7e-19 Score=151.48 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=57.5
Q ss_pred CCCcceeeCcccCC-----------eecCHHHHHHHHHHHHhhhcCCCCCC---cceEEecCCCCChhhhhhhcc
Q psy2593 34 HSSGCFYFYPVRHG-----------LVEDWDLMERFFEQCIFKYLRAEPED---HYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 34 ~r~~l~l~~Pi~~G-----------~V~nWD~~E~iw~~~f~~~L~v~p~e---~pvLlTEp~~n~~~~Rek~aE 94 (139)
+++.+.+++||++| +|.|||+||.||+|+|.++|+|.|++ ||||||||+++++..|++|+|
T Consensus 145 ~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~e 219 (593)
T 4fo0_A 145 PLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVN 219 (593)
T ss_dssp TTSSEEEECSEETTEECCCSSTTCSHHHHHHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHH
T ss_pred CcccceEecCcccCccccccCCccchhcCHHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999 68999999999999999999999876 999999999999999999999
No 4
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=99.72 E-value=1.1e-18 Score=145.29 Aligned_cols=95 Identities=31% Similarity=0.492 Sum_probs=28.0
Q ss_pred CCcceeeCcccCCeecCHHHHHHHHHHHH-hhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593 35 SSGCFYFYPVRHGLVEDWDLMERFFEQCI-FKYLRAEPEDHYFLLTEPPLNTPENREYTAE------------------- 94 (139)
Q Consensus 35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f-~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE------------------- 94 (139)
++.+.+.+|+++|+|+|||.+|.+|+|+| .+.|+++|.++|||+|+|+++++.+|++++|
T Consensus 65 ~~~~~~~~Pi~~G~i~dwd~~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~ 144 (394)
T 1k8k_B 65 RSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVL 144 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeeccccCCEEecHHHHHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHH
Confidence 56789999999999999999999999999 8899999999999999999999999999999
Q ss_pred -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593 95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC 119 (139)
Q Consensus 95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa 119 (139)
+|+.+.+..+.+++++|||++|||+
T Consensus 145 a~~a~g~~~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~ 224 (394)
T 1k8k_B 145 TLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVG 224 (394)
T ss_dssp ---------CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCC
T ss_pred HHHhCCCceEEEEEcCCCceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEe
Confidence 2344555578999999999999999
Q ss_pred cCHHHHHHhh
Q psy2593 120 PDIAKEFAKY 129 (139)
Q Consensus 120 ~Dy~~E~~~~ 129 (139)
.|+.+|++..
T Consensus 225 ~d~~~~~~~~ 234 (394)
T 1k8k_B 225 YNIEQEQKLA 234 (394)
T ss_dssp SSHHHHHHHH
T ss_pred cCHHHHHHhh
Confidence 9999988543
No 5
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=99.71 E-value=1.3e-17 Score=137.55 Aligned_cols=95 Identities=34% Similarity=0.593 Sum_probs=83.5
Q ss_pred CCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc--------------------
Q psy2593 35 SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE-------------------- 94 (139)
Q Consensus 35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE-------------------- 94 (139)
++.+.+.+||++|+|.|||.+|.+|+|+|.+.|++++.++|+++|+|++++..+|++++|
T Consensus 62 ~~~~~~~~Pi~~G~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aa 141 (375)
T 2fxu_A 62 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLS 141 (375)
T ss_dssp TTSEEEECSEETTEECCHHHHHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHH
T ss_pred CcccceeccccCCcccCHHHHHHHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchhee
Confidence 456899999999999999999999999998889999999999999999999999999998
Q ss_pred ------------------------------------------------------cCcccCCcChHHHHHHhhhhcccccc
Q psy2593 95 ------------------------------------------------------REIGIPPEQSLETAKAIKERYSYICP 120 (139)
Q Consensus 95 ------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa~ 120 (139)
+|+.+.+..+.+++++||+++|||+.
T Consensus 142 a~a~g~~~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~ 221 (375)
T 2fxu_A 142 LYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVAL 221 (375)
T ss_dssp HHHTTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCS
T ss_pred eeecCCCeEEEEEcCCCceEEeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcc
Confidence 12333334578999999999999999
Q ss_pred CHHHHHHhh
Q psy2593 121 DIAKEFAKY 129 (139)
Q Consensus 121 Dy~~E~~~~ 129 (139)
|+.+|++..
T Consensus 222 ~~~~e~~~~ 230 (375)
T 2fxu_A 222 DFENEMATA 230 (375)
T ss_dssp SHHHHHHHH
T ss_pred cHHHHHHhh
Confidence 999997643
No 6
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=99.69 E-value=1.3e-17 Score=147.98 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=65.1
Q ss_pred cccccccCCCCCCccccCCC---CCCcceeeCcccCCeec----C-------HHHHHHHHHHHHhh-hcCCCCC---Ccc
Q psy2593 14 HRRENIDRDCSGQWRWCHPC---HSSGCFYFYPVRHGLVE----D-------WDLMERFFEQCIFK-YLRAEPE---DHY 75 (139)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~---~r~~l~l~~Pi~~G~V~----n-------WD~~E~iw~~~f~~-~L~v~p~---e~p 75 (139)
+|.+-++.+ ...+++.+. .++.+.+++||++|+|. | ||+||.||+|+|.+ +|+++|. ++|
T Consensus 146 ~~~~W~~~~--~d~~VGdEA~~~~r~~l~l~~PI~~GvI~~~s~Dy~s~q~~WD~mE~Iw~y~f~~~~L~V~p~~~~e~p 223 (655)
T 4am6_A 146 SPIEWIFDD--SKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKPTKFNQYK 223 (655)
T ss_dssp CSCCCBCCT--TSCEEHHHHHTBCTTTEEEECSEETTEECTTCSSCSSHHHHHHHHHHHHHHHHBSSSCBCCGGGGGGCE
T ss_pred cccccccCC--CCEEEehHHhhCCccCeEEeccccCCEecccCCccccccccHHHHHHHHHHHhccccccccccccCCCc
Confidence 455555542 133344332 56899999999999998 8 99999999999974 8999996 899
Q ss_pred eEEecCCCCChhhhhhhcc
Q psy2593 76 FLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 76 vLlTEp~~n~~~~Rek~aE 94 (139)
||||||+++|+.+|++|+|
T Consensus 224 VLLTEPplnp~~~REkm~E 242 (655)
T 4am6_A 224 VVLVIPDIFKKSHVETFIR 242 (655)
T ss_dssp EEEEECTTCCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 9999999999999999999
No 7
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=99.62 E-value=7.9e-16 Score=128.01 Aligned_cols=58 Identities=83% Similarity=1.380 Sum_probs=55.8
Q ss_pred cceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593 37 GCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 37 ~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
.+.+++||++|+|.|||.+|.+|+|+|.+.|+++|+++|+++|+|++++..+|++|.|
T Consensus 71 ~~~~~~pi~~G~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e 128 (418)
T 1k8k_A 71 TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128 (418)
T ss_dssp TSEEECCEETTEESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHH
T ss_pred CCEEeccccCCEECCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHH
Confidence 5999999999999999999999999998889999999999999999999999999988
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=97.59 E-value=9.3e-05 Score=59.26 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=48.4
Q ss_pred cceeeCcccCCeecCHHHHHHHHHHHHhhhcCCC-CCCcceEEecCCCCChhhhhhhcc
Q psy2593 37 GCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAE-PEDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 37 ~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~-p~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
.+.+.+|+.+|.|.||+.++.+|.++|..-.... +.+.++++|.|+..+..+|+.+.+
T Consensus 58 ~~~~~~p~~~g~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~ 116 (344)
T 1jce_A 58 TIKAIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILD 116 (344)
T ss_dssp TEEEECCEETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred CeEEEecCCCCeeCChHHHHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHH
Confidence 5667899999999999999999999995322222 446899999999999999998888
No 9
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=92.59 E-value=0.13 Score=39.25 Aligned_cols=56 Identities=21% Similarity=0.084 Sum_probs=37.0
Q ss_pred eeeCcccCCeecCHHHHHHHHHHHHhhhcCCCC-CCcceEEecCCCCChhhhhhhcc
Q psy2593 39 FYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEP-EDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 39 ~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p-~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
....|+.+|.|.|||.++.+|.+++........ ....++++.|.......|+.+.+
T Consensus 57 ~~~~~l~~g~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~ 113 (272)
T 3h1q_A 57 KWASVVKDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGH 113 (272)
T ss_dssp EECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHH
T ss_pred ecccccCCCEEEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHH
Confidence 345799999999999999999999854332222 23456777777665555554444
No 10
>2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS), structural G NPPSFA; 2.10A {Pyrococcus horikoshii} PDB: 2dtt_A*
Probab=47.86 E-value=18 Score=24.51 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=25.5
Q ss_pred CcccccccccCCCCCCccccCCCCCCc----ceeeCcccCCeecCHHHHHHHHHHHH
Q psy2593 11 SSAHRRENIDRDCSGQWRWCHPCHSSG----CFYFYPVRHGLVEDWDLMERFFEQCI 63 (139)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~r~~----l~l~~Pi~~G~V~nWD~~E~iw~~~f 63 (139)
+.|||-.. +|. |...+... +.+.-+++.|+|.||.++..++..+.
T Consensus 12 ~aaH~l~~---~g~-----C~~lHGH~y~v~v~v~g~ld~gmv~Df~~lk~~~~~i~ 60 (115)
T 2dj6_A 12 DAAHAVKV---GDH-----WEDVHGHTFFLEVAIEGEIKNGYVMDFLELRKIVEEIT 60 (115)
T ss_dssp EEBCC------------------CCEEEEEEEEEECCCBTTBSSCHHHHHHHHHHHH
T ss_pred EeeccCCC---CCC-----ccCcCCCCEEEEEEEEeccCCCceeeHHHHHHHHHHHH
Confidence 56787765 221 55555443 34455665599999999999988854
No 11
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=33.62 E-value=12 Score=20.96 Aligned_cols=13 Identities=54% Similarity=1.720 Sum_probs=9.9
Q ss_pred cCCCCCCccccCCC
Q psy2593 20 DRDCSGQWRWCHPC 33 (139)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (139)
-.||||-| ||..+
T Consensus 15 ~DDCS~gw-~CqaC 27 (38)
T 4cpa_I 15 HDDCSGAW-FCQAC 27 (38)
T ss_dssp SSSSCCCS-SCCEE
T ss_pred ccccccch-HHHHH
Confidence 46999999 67655
No 12
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=32.32 E-value=21 Score=29.83 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=33.7
Q ss_pred ccc---CCeecCHHHHHHHHHHHHhhhcC------CCCCCcceEEecCCCCChhhhhhhcc
Q psy2593 43 PVR---HGLVEDWDLMERFFEQCIFKYLR------AEPEDHYFLLTEPPLNTPENREYTAE 94 (139)
Q Consensus 43 Pi~---~G~V~nWD~~E~iw~~~f~~~L~------v~p~e~pvLlTEp~~n~~~~Rek~aE 94 (139)
|+. +|. +|+ .+.+|.++| .+|. +......+++|.|+..+..+|+.+.+
T Consensus 74 p~~~~~~g~--~~~-~~ei~a~~L-~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~ 130 (509)
T 2v7y_A 74 DYKVEIEGK--QYT-PQEISAIIL-QYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKD 130 (509)
T ss_dssp CCCEEETTE--EEC-HHHHHHHHH-HHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred CcEEEECCE--EEc-HHHHHHHHH-HHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 665 774 555 577777776 3332 12334689999999999999988887
No 13
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=25.80 E-value=27 Score=24.64 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=15.4
Q ss_pred cccCCC------CCCccccCCCCCCcceeeCcccC
Q psy2593 18 NIDRDC------SGQWRWCHPCHSSGCFYFYPVRH 46 (139)
Q Consensus 18 ~~~~~~------~~~~~~~~~~~r~~l~l~~Pi~~ 46 (139)
|.|||| ++.-+||-+++.+....+..+++
T Consensus 79 ~~dR~G~~l~~vsp~Ry~CtqCHVPQ~~~~PlV~N 113 (123)
T 1jni_A 79 FMDRDGKVGSSSSPRRYFCLQCHVSQANVDPIVPN 113 (123)
T ss_dssp TCCTTSCC-----CCSCCGGGTCCC----------
T ss_pred eecCCCCcccccCccceecccccCCcccccccccC
Confidence 667877 56789999999999888744444
No 14
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=25.02 E-value=18 Score=21.29 Aligned_cols=16 Identities=19% Similarity=0.879 Sum_probs=12.6
Q ss_pred ccccccCCCCCCcccc
Q psy2593 15 RRENIDRDCSGQWRWC 30 (139)
Q Consensus 15 ~~~~~~~~~~~~~~~~ 30 (139)
-..|+=.+|.+.|+||
T Consensus 35 T~Fy~C~~Cg~~w~~~ 50 (50)
T 1tfi_A 35 TTFVVCNECGNRWKFC 50 (50)
T ss_dssp EEEEEESSSCCEEECC
T ss_pred eEEEEcCCCCCeEEeC
Confidence 3467778899999987
No 15
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=22.78 E-value=41 Score=23.90 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=21.6
Q ss_pred cccCCC------CCCccccCCCCCCcceeeCcccC
Q psy2593 18 NIDRDC------SGQWRWCHPCHSSGCFYFYPVRH 46 (139)
Q Consensus 18 ~~~~~~------~~~~~~~~~~~r~~l~l~~Pi~~ 46 (139)
++|||| ++.-|||-+++.+.......+++
T Consensus 80 ~~dR~g~~l~~vsp~RYfCtQCHVpQada~PlV~N 114 (130)
T 1ogy_B 80 FQDREGQMLADVSPRRYFCTACHVPQTNAQPLVTN 114 (130)
T ss_dssp GBCTTSCBCSSCCSTTCCGGGTCCBCBCCCCSSCB
T ss_pred eeccCCCcccccCccceecccccCccccCcccccc
Confidence 567776 55678999999999888744444
No 16
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=20.84 E-value=47 Score=26.19 Aligned_cols=52 Identities=8% Similarity=0.015 Sum_probs=36.3
Q ss_pred CcccCCeecCHHHHHHHHHHHHhhhc-CCCCCCcceE--EecCCCCChhhhhhhcc
Q psy2593 42 YPVRHGLVEDWDLMERFFEQCIFKYL-RAEPEDHYFL--LTEPPLNTPENREYTAE 94 (139)
Q Consensus 42 ~Pi~~G~V~nWD~~E~iw~~~f~~~L-~v~p~e~pvL--lTEp~~n~~~~Rek~aE 94 (139)
+|+..|.+.+ +..+.++.+.+.... .-...+..++ ++-|+.....+|+.+.+
T Consensus 88 ~~l~~~~~~~-~~~~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~ 142 (346)
T 2fsj_A 88 VPQGDGRLAS-KEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKE 142 (346)
T ss_dssp CCSSTTCTTS-TTTHHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHH
T ss_pred cccCCCcccC-hhHHHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHH
Confidence 8999999999 888888888875432 1112334588 88888776667766665
Done!