RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2593
         (139 letters)



>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 158

 Score = 70.1 bits (171), Expect = 7e-17
 Identities = 48/62 (77%), Positives = 51/62 (82%)

Query: 33  CHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYT 92
                    +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYT
Sbjct: 65  IEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYT 124

Query: 93  AE 94
           AE
Sbjct: 125 AE 126


>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 140

 Score = 64.3 bits (156), Expect = 9e-15
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 34  HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 93
                   YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE   
Sbjct: 55  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 114

Query: 94  E 94
           +
Sbjct: 115 Q 115


>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 168

 Score = 24.9 bits (54), Expect = 3.0
 Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 41  FYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPE 87
           F+  R    E  ++     +  +        ++  F   E    T E
Sbjct: 118 FFRYRKQGYEPSEIPAGAIDPVLEWISSL-EDEEIFEYREIDGFTFE 163


>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
          C-terminal domain {Deinococcus radiodurans [TaxId:
          1299]}
          Length = 157

 Score = 23.9 bits (51), Expect = 6.8
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 26 QWRWCHPCHSSGCFYFYPVRHGLV 49
          Q   C  C +    +  P+   L+
Sbjct: 69 QTARCARCGAPDPEHPDPLGGQLL 92


>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
           {Cellulomonas sp. [TaxId: 40001]}
          Length = 266

 Score = 23.9 bits (51), Expect = 8.7
 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 10/43 (23%)

Query: 81  PPLNTPENREYTAEREIGIPPEQSLETAKAIKERYSYICPDIA 123
           PPL+ P    +            +   A  I +       D+A
Sbjct: 1   PPLDDPATDPF----------LVARAAADHIAQATGVEGHDMA 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.460 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 615,892
Number of extensions: 29193
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 20
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)