Query psy2594
Match_columns 117
No_of_seqs 147 out of 1091
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:09:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 8.8E-31 1.9E-35 205.7 7.3 94 2-111 272-374 (375)
2 PTZ00280 Actin-related protein 100.0 1.4E-30 3E-35 206.4 8.0 114 2-115 291-413 (414)
3 PTZ00466 actin-like protein; P 100.0 3.5E-30 7.5E-35 202.7 7.4 94 2-111 277-379 (380)
4 PTZ00281 actin; Provisional 100.0 5.7E-30 1.2E-34 200.9 7.2 94 2-111 273-375 (376)
5 PTZ00004 actin-2; Provisional 100.0 2.1E-29 4.4E-34 197.8 7.4 95 1-111 274-377 (378)
6 KOG0676|consensus 100.0 3.6E-29 7.9E-34 195.8 6.7 94 2-111 269-371 (372)
7 PF00022 Actin: Actin; InterP 99.9 3.2E-28 7E-33 190.2 5.9 94 2-111 289-392 (393)
8 smart00268 ACTIN Actin. ACTIN 99.9 3.5E-27 7.7E-32 183.7 7.5 94 2-111 270-372 (373)
9 KOG0679|consensus 99.9 3.9E-27 8.5E-32 183.2 4.6 94 1-111 319-425 (426)
10 COG5277 Actin and related prot 99.9 2.3E-25 5E-30 178.4 5.5 94 2-111 341-443 (444)
11 cd00012 ACTIN Actin; An ubiqui 99.9 7.2E-25 1.6E-29 170.8 7.2 95 2-110 268-371 (371)
12 KOG0680|consensus 99.9 4.9E-25 1.1E-29 168.8 5.6 94 2-111 296-398 (400)
13 KOG0678|consensus 99.9 3.9E-22 8.5E-27 153.2 4.1 115 1-117 292-415 (415)
14 KOG0677|consensus 99.8 5.9E-20 1.3E-24 138.4 3.8 103 2-109 273-385 (389)
15 KOG0681|consensus 99.7 2E-17 4.2E-22 133.7 4.3 94 2-111 537-639 (645)
16 KOG0797|consensus 99.2 2.9E-12 6.2E-17 103.5 1.7 99 3-113 505-616 (618)
17 TIGR00904 mreB cell shape dete 97.8 9.3E-06 2E-10 62.8 2.4 60 2-85 257-326 (333)
18 PRK13930 rod shape-determining 97.7 2.9E-05 6.4E-10 59.7 2.7 60 3-86 259-328 (335)
19 PRK13927 rod shape-determining 97.7 3.1E-05 6.7E-10 59.7 2.8 59 3-85 255-323 (334)
20 PF06723 MreB_Mbl: MreB/Mbl pr 97.6 7.2E-05 1.6E-09 58.4 3.5 59 3-85 252-320 (326)
21 PRK13929 rod-share determining 97.5 7.3E-05 1.6E-09 58.1 3.2 58 3-84 257-324 (335)
22 PRK13928 rod shape-determining 97.2 0.00032 7E-09 54.3 3.7 60 3-86 254-323 (336)
23 TIGR02529 EutJ ethanolamine ut 96.5 0.003 6.5E-08 47.1 3.6 35 4-38 182-218 (239)
24 PRK15080 ethanolamine utilizat 96.2 0.0077 1.7E-07 45.5 4.2 57 4-84 209-267 (267)
25 CHL00094 dnaK heat shock prote 93.8 0.075 1.6E-06 44.7 3.8 56 6-85 313-375 (621)
26 COG1077 MreB Actin-like ATPase 93.6 0.037 8.1E-07 43.4 1.6 58 3-84 262-329 (342)
27 PRK00290 dnaK molecular chaper 93.4 0.096 2.1E-06 44.1 3.8 57 5-85 310-373 (627)
28 TIGR02350 prok_dnaK chaperone 93.2 0.1 2.2E-06 43.5 3.5 58 4-85 307-371 (595)
29 TIGR02261 benz_CoA_red_D benzo 92.5 0.1 2.2E-06 39.8 2.4 46 20-84 217-262 (262)
30 PRK13411 molecular chaperone D 91.1 0.24 5.2E-06 42.1 3.4 35 4-38 310-351 (653)
31 PRK09472 ftsA cell division pr 90.8 0.25 5.4E-06 39.6 3.1 53 20-85 334-387 (420)
32 TIGR01991 HscA Fe-S protein as 90.6 0.32 6.9E-06 40.9 3.7 35 4-38 295-336 (599)
33 PTZ00186 heat shock 70 kDa pre 90.6 0.34 7.4E-06 41.3 3.9 33 6-38 338-377 (657)
34 PRK05183 hscA chaperone protei 90.4 0.38 8.2E-06 40.6 4.0 35 4-38 311-352 (616)
35 PLN03184 chloroplast Hsp70; Pr 90.2 0.36 7.8E-06 41.2 3.8 34 5-38 349-389 (673)
36 PTZ00009 heat shock 70 kDa pro 90.1 0.34 7.5E-06 41.1 3.5 34 5-38 316-356 (653)
37 PTZ00400 DnaK-type molecular c 90.0 0.35 7.5E-06 41.2 3.5 34 5-38 351-391 (663)
38 PRK01433 hscA chaperone protei 89.9 0.48 1E-05 39.9 4.2 34 5-38 294-332 (595)
39 PF00012 HSP70: Hsp70 protein; 88.4 0.35 7.6E-06 39.9 2.3 58 4-85 311-375 (602)
40 TIGR01174 ftsA cell division p 87.7 0.61 1.3E-05 36.6 3.2 37 4-40 296-340 (371)
41 PRK13410 molecular chaperone D 87.2 0.64 1.4E-05 39.7 3.3 34 5-38 312-352 (668)
42 TIGR00241 CoA_E_activ CoA-subs 87.0 1 2.2E-05 33.4 3.9 56 4-83 190-248 (248)
43 PF01869 BcrAD_BadFG: BadF/Bad 86.7 0.4 8.7E-06 35.8 1.6 62 4-84 206-271 (271)
44 TIGR02259 benz_CoA_red_A benzo 85.2 2.2 4.7E-05 34.8 5.2 46 20-84 387-432 (432)
45 COG4820 EutJ Ethanolamine util 83.8 2.2 4.8E-05 32.0 4.3 35 4-38 214-250 (277)
46 TIGR03192 benz_CoA_bzdQ benzoy 83.0 1.4 2.9E-05 34.3 3.0 42 20-85 245-287 (293)
47 PRK11678 putative chaperone; P 82.3 1.5 3.2E-05 35.8 3.2 35 4-38 385-423 (450)
48 TIGR03286 methan_mark_15 putat 82.2 2.2 4.7E-05 34.6 4.0 42 20-85 361-402 (404)
49 COG1924 Activator of 2-hydroxy 76.2 4.1 9E-05 32.8 3.9 42 20-85 348-389 (396)
50 PRK13310 N-acetyl-D-glucosamin 73.5 13 0.00029 28.0 6.0 66 4-84 233-300 (303)
51 PRK13317 pantothenate kinase; 71.5 11 0.00024 28.8 5.1 45 20-85 228-273 (277)
52 PRK09557 fructokinase; Reviewe 68.8 20 0.00042 27.1 6.0 38 4-41 232-271 (301)
53 PRK05082 N-acetylmannosamine k 68.2 19 0.0004 27.0 5.7 64 4-84 221-286 (291)
54 PF11104 PilM_2: Type IV pilus 66.7 3.4 7.3E-05 32.1 1.4 21 20-40 280-300 (340)
55 TIGR01175 pilM type IV pilus a 58.4 7.3 0.00016 29.9 2.0 21 20-40 288-308 (348)
56 PF03702 UPF0075: Uncharacteri 57.7 7.4 0.00016 31.1 1.9 36 5-40 271-310 (364)
57 TIGR00744 ROK_glcA_fam ROK fam 53.7 54 0.0012 24.7 6.0 68 4-85 239-309 (318)
58 PF09337 zf-H2C2: His(2)-Cys(2 52.8 14 0.0003 19.9 1.9 16 2-17 22-37 (39)
59 KOG0100|consensus 50.7 13 0.00029 30.7 2.3 33 4-36 349-384 (663)
60 PF09693 Phage_XkdX: Phage unc 47.5 12 0.00026 20.2 1.2 12 91-102 24-35 (40)
61 KOG2960|consensus 47.0 18 0.0004 27.5 2.4 50 61-110 101-155 (328)
62 PF12401 DUF3662: Protein of u 46.2 3.9 8.5E-05 27.2 -1.1 72 29-107 28-99 (116)
63 PF14824 Sirohm_synth_M: Siroh 45.4 31 0.00068 17.6 2.4 19 21-41 11-29 (30)
64 PRK09698 D-allose kinase; Prov 43.4 70 0.0015 24.0 5.2 68 4-85 224-295 (302)
65 TIGR01669 phage_XkdX phage unc 41.4 15 0.00033 20.4 1.0 15 88-102 25-40 (45)
66 PF03727 Hexokinase_2: Hexokin 41.2 54 0.0012 24.3 4.2 48 20-85 191-239 (243)
67 PRK09585 anmK anhydro-N-acetyl 40.4 34 0.00074 27.4 3.2 35 5-39 273-311 (365)
68 cd02067 B12-binding B12 bindin 39.5 93 0.002 19.9 4.8 36 5-40 39-76 (119)
69 PF00220 Hormone_4: Neurohypop 38.0 13 0.00027 13.9 0.2 6 12-17 3-8 (9)
70 COG0278 Glutaredoxin-related p 37.7 83 0.0018 20.8 4.1 41 1-41 1-43 (105)
71 COG1237 Metal-dependent hydrol 36.4 64 0.0014 24.7 4.0 40 2-41 177-218 (259)
72 PRK02261 methylaspartate mutas 34.6 1.2E+02 0.0027 20.4 4.9 30 75-107 87-116 (137)
73 COG3976 Uncharacterized protei 29.0 59 0.0013 22.3 2.5 38 2-40 95-132 (135)
74 PF14716 HHH_8: Helix-hairpin- 27.4 29 0.00062 20.5 0.7 35 8-42 31-67 (68)
75 PF15165 REC114-like: Meiotic 27.4 39 0.00083 25.6 1.4 22 20-41 222-243 (243)
76 COG0849 ftsA Cell division ATP 26.4 46 0.001 27.1 1.9 71 4-86 303-380 (418)
77 COG1350 Predicted alternative 25.2 72 0.0016 25.8 2.6 15 20-34 261-275 (432)
78 COG1940 NagC Transcriptional r 24.7 1.8E+02 0.004 21.8 4.8 38 4-41 235-276 (314)
79 PTZ00107 hexokinase; Provision 23.4 1.5E+02 0.0032 24.5 4.3 49 20-86 410-459 (464)
80 KOG0421|consensus 22.5 70 0.0015 22.5 1.9 13 30-42 30-42 (175)
81 COG2878 Predicted NADH:ubiquin 22.3 41 0.00088 24.7 0.7 17 10-26 122-138 (198)
82 PF13740 ACT_6: ACT domain; PD 22.2 1.8E+02 0.004 17.1 5.9 38 2-42 13-66 (76)
No 1
>PTZ00452 actin; Provisional
Probab=99.97 E-value=8.8e-31 Score=205.67 Aligned_cols=94 Identities=18% Similarity=0.334 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
+||+++|++||++||+|+ |+||+|+||||.+||++||+.++ |...+++|.++++|
T Consensus 272 ~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~----------------p~~~~v~v~~~~~r 335 (375)
T PTZ00452 272 AGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLV----------------PSQLKIQVAAPPDR 335 (375)
T ss_pred CChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhC----------------CCCceeEEecCCCc
Confidence 699999999999999996 99999999999999999999985 55678999999999
Q ss_pred ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594 73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP 111 (117)
Q Consensus 73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~ 111 (117)
++++|+||||+|+++.|+++||||+||+|+|++++++|+
T Consensus 336 ~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~ 374 (375)
T PTZ00452 336 RFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKC 374 (375)
T ss_pred ceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeec
Confidence 999999999999999999999999999999999997754
No 2
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.97 E-value=1.4e-30 Score=206.35 Aligned_cols=114 Identities=53% Similarity=0.895 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
.||+++|.+||++||+|+ |+||+|+||||.+||++||+++++.++..++.+++....|..++|+|..++++
T Consensus 291 ~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 370 (414)
T PTZ00280 291 TPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQ 370 (414)
T ss_pred CCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCcc
Confidence 589999999999999997 99999999999999999999998654433333333333456778999999999
Q ss_pred ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecCCCCC
Q psy2594 73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGT 115 (117)
Q Consensus 73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~~f~~ 115 (117)
++++|+||||+|+++.|+++||||+||+|+|+++++++-.|.+
T Consensus 371 ~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~~~~~~ 413 (414)
T PTZ00280 371 RYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYNNVFHS 413 (414)
T ss_pred ceeEEEChhhcccCcchhhheEEHHHHhccChHheeecccccC
Confidence 9999999999999999999999999999999999998877764
No 3
>PTZ00466 actin-like protein; Provisional
Probab=99.96 E-value=3.5e-30 Score=202.65 Aligned_cols=94 Identities=19% Similarity=0.343 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
+||+++|++||++||+|+ |+||+|+||||.+||++||++++ |...+++|..+++|
T Consensus 277 ~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~----------------p~~~~v~v~~~~~r 340 (380)
T PTZ00466 277 LGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFA----------------PKDITIRISAPPER 340 (380)
T ss_pred CCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhC----------------CCCceEEEecCCCC
Confidence 699999999999999997 99999999999999999999985 55678999999999
Q ss_pred ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594 73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP 111 (117)
Q Consensus 73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~ 111 (117)
++++|+|||++|+++.|+++||||+||+|+|++++++|+
T Consensus 341 ~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~ 379 (380)
T PTZ00466 341 KFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKT 379 (380)
T ss_pred ceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeec
Confidence 999999999999999999999999999999999997654
No 4
>PTZ00281 actin; Provisional
Probab=99.96 E-value=5.7e-30 Score=200.88 Aligned_cols=94 Identities=22% Similarity=0.486 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
+||+++|++||++||+|+ |+||+|+||||.+||++||++++ |...+++|..+++|
T Consensus 273 ~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~----------------p~~~~v~v~~~~~r 336 (376)
T PTZ00281 273 AGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALA----------------PSTMKIKIIAPPER 336 (376)
T ss_pred CCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhC----------------CCCcceEEecCCCC
Confidence 699999999999999997 99999999999999999999985 55678999999999
Q ss_pred ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594 73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP 111 (117)
Q Consensus 73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~ 111 (117)
++++|+|||++|+++.|++.||||+||+|+|++++++|+
T Consensus 337 ~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~ 375 (376)
T PTZ00281 337 KYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKC 375 (376)
T ss_pred ceeEEECcccccCcccHhhceeeHHHHhhhCchheeeec
Confidence 999999999999999999999999999999999997654
No 5
>PTZ00004 actin-2; Provisional
Probab=99.96 E-value=2.1e-29 Score=197.77 Aligned_cols=95 Identities=25% Similarity=0.508 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCC
Q psy2594 1 MPPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHM 71 (117)
Q Consensus 1 ~~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 71 (117)
.+||+++|.+||++||+|+ |+||+|++|||.+||++||++++ |...+++|..+++
T Consensus 274 ~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~----------------p~~~~~~v~~~~~ 337 (378)
T PTZ00004 274 PPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLA----------------PSTMKIKVVAPPE 337 (378)
T ss_pred cCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhC----------------CCCccEEEecCCC
Confidence 3699999999999999997 99999999999999999999985 5566789999999
Q ss_pred cccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594 72 QRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP 111 (117)
Q Consensus 72 ~~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~ 111 (117)
|++++|+|||++|+++.|++.||||+||+|+|++++++|+
T Consensus 338 ~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~ 377 (378)
T PTZ00004 338 RKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKC 377 (378)
T ss_pred CceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeec
Confidence 9999999999999999999999999999999999997654
No 6
>KOG0676|consensus
Probab=99.95 E-value=3.6e-29 Score=195.79 Aligned_cols=94 Identities=28% Similarity=0.517 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
+||++++++||.+||+|+ |+||+|++|||.+||++||+.++ |+..+++|..+|++
T Consensus 269 ~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~----------------P~~~~ikv~~pp~r 332 (372)
T KOG0676|consen 269 PGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALA----------------PSTIKIKVIAPPER 332 (372)
T ss_pred CchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcC----------------CCCcceEEecCccc
Confidence 699999999999999998 99999999999999999999984 67788999999999
Q ss_pred ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594 73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP 111 (117)
Q Consensus 73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~ 111 (117)
.|++|+||||+|+++.|+++||||+||+|+|++++++||
T Consensus 333 ~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~ 371 (372)
T KOG0676|consen 333 KYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKC 371 (372)
T ss_pred ccceecCceeEeecchHhhccccHHHHhhhCCceeeecc
Confidence 999999999999999999999999999999999997654
No 7
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.95 E-value=3.2e-28 Score=190.20 Aligned_cols=94 Identities=32% Similarity=0.498 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCC-C
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHH-M 71 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-~ 71 (117)
.||+++|.+||++||+|+ |+||+|++|||.+||++||+.+. |...+++|..++ +
T Consensus 289 ~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~----------------~~~~~~~v~~~~~~ 352 (393)
T PF00022_consen 289 MGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLL----------------PSSTKVKVIAPPSD 352 (393)
T ss_dssp SCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHS----------------GTTSTEEEE--T-T
T ss_pred chhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhh----------------hccccceeccCchh
Confidence 499999999999999997 99999999999999999999984 456689999988 9
Q ss_pred cccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594 72 QRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP 111 (117)
Q Consensus 72 ~~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~ 111 (117)
|.+++|+|||++|+++.|+++||||+||+|+|++++++||
T Consensus 353 ~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc 392 (393)
T PF00022_consen 353 RQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKC 392 (393)
T ss_dssp TTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT
T ss_pred hhhcccccceeeeccccccceeeeHHHHhCcCcceeeecC
Confidence 9999999999999999999999999999999999997654
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.94 E-value=3.5e-27 Score=183.74 Aligned_cols=94 Identities=27% Similarity=0.446 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
+||+++|.++|++||.|+ |+||+|++|||.+||++||+.++ |...++++..++++
T Consensus 270 ~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~----------------p~~~~v~v~~~~~~ 333 (373)
T smart00268 270 KGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLA----------------PKKLKVKVIAPPER 333 (373)
T ss_pred CCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhC----------------CCCceeEEecCCCC
Confidence 599999999999999997 99999999999999999999985 45667889888899
Q ss_pred ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594 73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP 111 (117)
Q Consensus 73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~ 111 (117)
.+++|+|||++|+++.|++.||||+||+|+|++++++|+
T Consensus 334 ~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~ 372 (373)
T smart00268 334 KYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKC 372 (373)
T ss_pred ccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeec
Confidence 999999999999999999999999999999999997655
No 9
>KOG0679|consensus
Probab=99.93 E-value=3.9e-27 Score=183.16 Aligned_cols=94 Identities=22% Similarity=0.367 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCC-
Q psy2594 1 MPPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHH- 70 (117)
Q Consensus 1 ~~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~- 70 (117)
|-|+++++..||..||+|+ |+||+|+++||.+||++||.+.. |.. ++++++..
T Consensus 319 ~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~----------------P~s-rlki~as~~ 381 (426)
T KOG0679|consen 319 MLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRA----------------PSS-RLKIIASGH 381 (426)
T ss_pred ccCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhC----------------Ccc-eEEEEecCc
Confidence 6799999999999999998 99999999999999999999984 444 88888753
Q ss_pred --CcccchhhhhhhhcCCcccccceecHHHHhhhCC-ceEEecC
Q psy2594 71 --MQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGP-SICRHNP 111 (117)
Q Consensus 71 --~~~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~-~~~~~~~ 111 (117)
+|+|++|+||||||+|++|+++||||+||+|.|. +.+.+||
T Consensus 382 t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 382 TVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred eeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 7999999999999999999999999999999999 4454443
No 10
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.91 E-value=2.3e-25 Score=178.37 Aligned_cols=94 Identities=27% Similarity=0.377 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
.||+++++++|+.||.|. |+||+|++|||.+||++||+.+. |..+.|.|..+++|
T Consensus 341 ~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~----------------p~~~~v~v~~~~~~ 404 (444)
T COG5277 341 AGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLA----------------PSIWKVSVIPPPDP 404 (444)
T ss_pred cchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhc----------------CCCCceeeecCCch
Confidence 479999999999999987 99999999999999999999984 66788999999999
Q ss_pred ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594 73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP 111 (117)
Q Consensus 73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~ 111 (117)
.+.+|+|||++|+++.|+.+||||+||+|+|++++++++
T Consensus 405 ~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~ 443 (444)
T COG5277 405 SLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKR 443 (444)
T ss_pred hhccccchhhhccccchhheEeeHHHhhhhhhHHHhhcc
Confidence 999999999999999999999999999999999997654
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.91 E-value=7.2e-25 Score=170.80 Aligned_cols=95 Identities=27% Similarity=0.436 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
.||+++|.++|++||.|+ |+||+|++|||.+||++||+.+++. .....+++...++|
T Consensus 268 ~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~--------------~~~~~~~~~~~~~~ 333 (371)
T cd00012 268 VGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPP--------------SKDTKVKVIAPPER 333 (371)
T ss_pred CCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCc--------------ccceEEEEccCCCc
Confidence 589999999999999986 9999999999999999999998631 11456777778899
Q ss_pred ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEec
Q psy2594 73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHN 110 (117)
Q Consensus 73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~ 110 (117)
.+++|+|||++|+++.|+++||||+||+|+|++++++|
T Consensus 334 ~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 334 KYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred cccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 99999999999999999999999999999999999765
No 12
>KOG0680|consensus
Probab=99.91 E-value=4.9e-25 Score=168.80 Aligned_cols=94 Identities=29% Similarity=0.416 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
+||||+|++||++||..+ ++||+++||||.+||.+||++++ |.++.|+|..+.+|
T Consensus 296 ~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~----------------P~d~~v~V~~p~dp 359 (400)
T KOG0680|consen 296 PGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLL----------------PADWEVSVSVPEDP 359 (400)
T ss_pred CCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhC----------------CccceEEEecCCCc
Confidence 799999999999999987 89999999999999999999995 77899999999999
Q ss_pred ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594 73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP 111 (117)
Q Consensus 73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~ 111 (117)
..-+|.||+.++.++.|...||||+||+|+|++++.+|+
T Consensus 360 ~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~ 398 (400)
T KOG0680|consen 360 ITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKR 398 (400)
T ss_pred ceeeehhccccccCcchhcceecHhhHhhcCchhhhhhc
Confidence 999999999999999999999999999999999998765
No 13
>KOG0678|consensus
Probab=99.85 E-value=3.9e-22 Score=153.23 Aligned_cols=115 Identities=57% Similarity=0.905 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCC
Q psy2594 1 MPPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHM 71 (117)
Q Consensus 1 ~~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 71 (117)
++.|++++-..|++||+|. +.||+++|.+|..|+++++++++..+...++.++| +.|...+|+++.+..
T Consensus 292 ~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg--~k~~~vdvqvish~~ 369 (415)
T KOG0678|consen 292 LTPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSG--IKSKPVDVQVLSHLL 369 (415)
T ss_pred CcchHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhccccc--CCCCCceeehhhhhh
Confidence 4678999999999999995 99999999999999999999999999888888888 367778899999999
Q ss_pred cccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecCCCCCCC
Q psy2594 72 QRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGTMT 117 (117)
Q Consensus 72 ~~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~~f~~~~ 117 (117)
.++++|.|||++++.++|...+-||++|+|+|++|++..+.|++|+
T Consensus 370 qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~~~~f~~~~ 415 (415)
T KOG0678|consen 370 QRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRTNPVFGVMT 415 (415)
T ss_pred hhcceeccCccccCCcccccccCcchhhhhhChhhhhcCchhcccC
Confidence 9999999999999999999999999999999999999999999985
No 14
>KOG0677|consensus
Probab=99.79 E-value=5.9e-20 Score=138.41 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
||+.++++++|+..++|+ |+||+||+||+..||++||+++.-.+. +.|+.-....+++++-+||.|
T Consensus 273 ~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rV-----L~~d~~~l~KfkiRIEdPPrR 347 (389)
T KOG0677|consen 273 PGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRV-----LKGDTDKLKKFKIRIEDPPRR 347 (389)
T ss_pred CcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHH-----HcCChhhhhheEEeccCCCcc
Confidence 799999999999999997 999999999999999999999853332 233222344578889999999
Q ss_pred ccchhhhhhhhcCC-cccccceecHHHHhhhCCceEEe
Q psy2594 73 RYAVWFGGSMLAST-PEFYEVCHTKAAYEEYGPSICRH 109 (117)
Q Consensus 73 ~~~aW~Ggsila~l-~~~~~~~itr~eY~E~G~~~~~~ 109 (117)
.+.+++||+++|+. ..-+++|+||+||+|.|.+.+.+
T Consensus 348 KhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k 385 (389)
T KOG0677|consen 348 KHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNK 385 (389)
T ss_pred ceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHh
Confidence 99999999999985 56679999999999999987643
No 15
>KOG0681|consensus
Probab=99.68 E-value=2e-17 Score=133.68 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
.||.|++-.++.+.|.|. ||||++++||+++||.+||..+ .|....|+|+...+|
T Consensus 537 aGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~m----------------rP~gS~i~V~rasdP 600 (645)
T KOG0681|consen 537 AGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSM----------------RPVGSSINVVRASDP 600 (645)
T ss_pred hhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhhee----------------cccCCceEEEecCCc
Confidence 488999999999999886 9999999999999999999998 366778999999999
Q ss_pred ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594 73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP 111 (117)
Q Consensus 73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~ 111 (117)
...||.||+.+|..+.|...++||+||+|+|+.+++.++
T Consensus 601 ~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 601 VLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred chhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHh
Confidence 999999999999999999999999999999999987654
No 16
>KOG0797|consensus
Probab=99.22 E-value=2.9e-12 Score=103.53 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=82.4
Q ss_pred CHHHHHHHHHhcCCCce----------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCC--
Q psy2594 3 PLVATRLKWLLNCPDEA----------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHH-- 70 (117)
Q Consensus 3 gl~~~i~~si~~cp~d~----------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-- 70 (117)
++.+.|+.||..|-.|- ++||..++||+.+-|++.+....+.. ......|.|+.+|
T Consensus 505 ~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~------------~~~I~~VsVip~prd 572 (618)
T KOG0797|consen 505 ALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPG------------REAIDTVSVIPPPRD 572 (618)
T ss_pred ccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCcc------------ccccCceeecCCCcC
Confidence 56677888888877653 99999999999999999888764320 0112357888877
Q ss_pred -CcccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecCCC
Q psy2594 71 -MQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVF 113 (117)
Q Consensus 71 -~~~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~~f 113 (117)
+|++-+|+||+|++.+....+.||+..||+-+|.++++.|+.|
T Consensus 573 Mdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~f 616 (618)
T KOG0797|consen 573 MDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKYF 616 (618)
T ss_pred CCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhcccc
Confidence 7999999999999999999999999999999999999998876
No 17
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=97.85 E-value=9.3e-06 Score=62.77 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHhcCCCce----------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCC
Q psy2594 2 PPLVATRLKWLLNCPDEA----------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHM 71 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~----------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 71 (117)
.+|.+.|.++|++|+.++ |+||+|++|||.+||++++.. .+....+
T Consensus 257 ~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~------------------------~v~~~~~ 312 (333)
T TIGR00904 257 NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGL------------------------PVIVADD 312 (333)
T ss_pred HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCC------------------------CceecCC
Confidence 367889999999998642 999999999999999988832 1333445
Q ss_pred cccchhhhhhhhcC
Q psy2594 72 QRYAVWFGGSMLAS 85 (117)
Q Consensus 72 ~~~~aW~Ggsila~ 85 (117)
|..++=+|+++++.
T Consensus 313 P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 313 PLLCVAKGTGKALE 326 (333)
T ss_pred hHHHHHHHHHHHHh
Confidence 67888889998864
No 18
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=97.67 E-value=2.9e-05 Score=59.72 Aligned_cols=60 Identities=17% Similarity=0.055 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhcCCCc---------e-eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 3 PLVATRLKWLLNCPDE---------A-ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 3 gl~~~i~~si~~cp~d---------~-l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
+|.+.|.++|.+|+.+ + |+||+|++|||.+||++++.. + +....+|
T Consensus 259 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~------------------~------v~~~~~p 314 (335)
T PRK13930 259 QIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL------------------P------VHIAEDP 314 (335)
T ss_pred HHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC------------------C------ceecCCH
Confidence 5788999999999854 3 999999999999999998742 1 2223345
Q ss_pred ccchhhhhhhhcCC
Q psy2594 73 RYAVWFGGSMLAST 86 (117)
Q Consensus 73 ~~~aW~Ggsila~l 86 (117)
..+.=.|+++++..
T Consensus 315 ~~ava~Ga~~~~~~ 328 (335)
T PRK13930 315 LTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHHHHHHHhC
Confidence 67777899998754
No 19
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=97.67 E-value=3.1e-05 Score=59.70 Aligned_cols=59 Identities=15% Similarity=0.016 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhcCCCc---------e-eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 3 PLVATRLKWLLNCPDE---------A-ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 3 gl~~~i~~si~~cp~d---------~-l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
+|.+.|.++|.+|+.+ + |+||+|++|||.+||++++.. ++. ...+|
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~----------------------~v~--~~~~P 310 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGL----------------------PVH--VAEDP 310 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCC----------------------CcE--ecCCH
Confidence 5789999999999854 2 999999999999999988731 122 33345
Q ss_pred ccchhhhhhhhcC
Q psy2594 73 RYAVWFGGSMLAS 85 (117)
Q Consensus 73 ~~~aW~Ggsila~ 85 (117)
..++=.|+++++.
T Consensus 311 ~~ava~Ga~~~~~ 323 (334)
T PRK13927 311 LTCVARGTGKALE 323 (334)
T ss_pred HHHHHHHHHHHHh
Confidence 6777889998864
No 20
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=97.56 E-value=7.2e-05 Score=58.43 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=47.5
Q ss_pred CHHHHHHHHHhcCCCce----------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 3 PLVATRLKWLLNCPDEA----------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 3 gl~~~i~~si~~cp~d~----------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
.|.+.|.++|.++|+++ ||||+++++|+.++|++|+. +.|...++|
T Consensus 252 ~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~------------------------~pV~va~~P 307 (326)
T PF06723_consen 252 QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETG------------------------VPVRVADDP 307 (326)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS------------------------S-EEE-SST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC------------------------CCEEEcCCH
Confidence 47889999999999986 99999999999999998882 245666677
Q ss_pred ccchhhhhhhhcC
Q psy2594 73 RYAVWFGGSMLAS 85 (117)
Q Consensus 73 ~~~aW~Ggsila~ 85 (117)
.+++=.|+..+..
T Consensus 308 ~~~va~G~~~~l~ 320 (326)
T PF06723_consen 308 LTAVARGAGKLLE 320 (326)
T ss_dssp TTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh
Confidence 8999999887654
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=97.53 E-value=7.3e-05 Score=58.09 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhcCCCce----------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 3 PLVATRLKWLLNCPDEA----------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 3 gl~~~i~~si~~cp~d~----------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
.|.+.|.++|.+||.++ |+||+|++|||.+||++++.. | +....+|
T Consensus 257 ~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~------------------~------v~~~~~P 312 (335)
T PRK13929 257 HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV------------------P------VHVAANP 312 (335)
T ss_pred HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC------------------C------ceeCCCH
Confidence 36789999999998653 999999999999999999842 1 1223456
Q ss_pred ccchhhhhhhhc
Q psy2594 73 RYAVWFGGSMLA 84 (117)
Q Consensus 73 ~~~aW~Ggsila 84 (117)
..++=+|++..-
T Consensus 313 ~~~Va~Ga~~~~ 324 (335)
T PRK13929 313 LESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHH
Confidence 777778888763
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.24 E-value=0.00032 Score=54.30 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhcCCCc---------e-eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 3 PLVATRLKWLLNCPDE---------A-ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 3 gl~~~i~~si~~cp~d---------~-l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
.+.+.|.++|.+|+.+ + |+||+|++||+.++|++++..- +....+|
T Consensus 254 ~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~------------------------v~~~~~P 309 (336)
T PRK13928 254 AIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVP------------------------VYIAEDP 309 (336)
T ss_pred HHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCC------------------------ceecCCH
Confidence 4678889999999854 2 9999999999999999888421 2223457
Q ss_pred ccchhhhhhhhcCC
Q psy2594 73 RYAVWFGGSMLAST 86 (117)
Q Consensus 73 ~~~aW~Ggsila~l 86 (117)
..++=+|+++.+..
T Consensus 310 ~~ava~Gaa~~~~~ 323 (336)
T PRK13928 310 ISCVALGTGKMLEN 323 (336)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888999998643
No 23
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.52 E-value=0.003 Score=47.08 Aligned_cols=35 Identities=0% Similarity=-0.054 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCce--eecCCCCcccHHHHHHHHH
Q psy2594 4 LVATRLKWLLNCPDEA--ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 4 l~~~i~~si~~cp~d~--l~GG~s~~~Gf~~RL~~EL 38 (117)
|.+.|.++|.+.+++- |+||++++||+.++|++.+
T Consensus 182 i~~~i~~~l~~~~~~~v~LtGG~a~ipgl~e~l~~~l 218 (239)
T TIGR02529 182 MASIVKRHIEGQGVKDLYLVGGACSFSGFADVFEKQL 218 (239)
T ss_pred HHHHHHHHHHhCCCCEEEEECchhcchhHHHHHHHHh
Confidence 4566677787777764 9999999999999999877
No 24
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.16 E-value=0.0077 Score=45.53 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCCce--eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhh
Q psy2594 4 LVATRLKWLLNCPDEA--ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGS 81 (117)
Q Consensus 4 l~~~i~~si~~cp~d~--l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggs 81 (117)
+.+.|.+++...+++- |+||+|++||+.+.+++.+.. | +..+++|.+++=+|++
T Consensus 209 i~~~i~~~l~~~~~~~IvLtGG~s~lpgl~e~l~~~lg~------------------~------v~~~~~P~~~~a~Gaa 264 (267)
T PRK15080 209 MASIVARHIEGQDVEDIYLVGGTCCLPGFEEVFEKQTGL------------------P------VHKPQHPLFVTPLGIA 264 (267)
T ss_pred HHHHHHHHHhcCCCCEEEEECCcccchhHHHHHHHHhCC------------------C------cccCCCchHHHHHHHH
Confidence 4456667777766664 999999999999999988732 1 1224567888888887
Q ss_pred hhc
Q psy2594 82 MLA 84 (117)
Q Consensus 82 ila 84 (117)
+++
T Consensus 265 ~~~ 267 (267)
T PRK15080 265 LSC 267 (267)
T ss_pred hhC
Confidence 653
No 25
>CHL00094 dnaK heat shock protein 70
Probab=93.79 E-value=0.075 Score=44.72 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCC---ce----eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhh
Q psy2594 6 ATRLKWLLNCPD---EA----ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWF 78 (117)
Q Consensus 6 ~~i~~si~~cp~---d~----l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~ 78 (117)
+.|-++|..... |+ |+||+|++|.+.+.|.+.+..- +....+|..++-+
T Consensus 313 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~------------------------~~~~~~pdeava~ 368 (621)
T CHL00094 313 IPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKK------------------------PNQSVNPDEVVAI 368 (621)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCC------------------------cCcCCCchhHHHh
Confidence 344556655533 22 9999999999999988755321 1122245677888
Q ss_pred hhhhhcC
Q psy2594 79 GGSMLAS 85 (117)
Q Consensus 79 Ggsila~ 85 (117)
||++.|.
T Consensus 369 GAA~~aa 375 (621)
T CHL00094 369 GAAVQAG 375 (621)
T ss_pred hhHHHHH
Confidence 8888875
No 26
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=93.63 E-value=0.037 Score=43.44 Aligned_cols=58 Identities=19% Similarity=0.055 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhcCCCce----------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594 3 PLVATRLKWLLNCPDEA----------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ 72 (117)
Q Consensus 3 gl~~~i~~si~~cp~d~----------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 72 (117)
+|.++|...+.+||.++ ++||.+++.|+++.|..|. .+.|.-.++|
T Consensus 262 ~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et------------------------~~pv~ia~~p 317 (342)
T COG1077 262 GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET------------------------GVPVIIADDP 317 (342)
T ss_pred HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc------------------------CCeEEECCCh
Confidence 57888999999999987 9999999999999998654 2335555667
Q ss_pred ccchhhhhhhhc
Q psy2594 73 RYAVWFGGSMLA 84 (117)
Q Consensus 73 ~~~aW~Ggsila 84 (117)
..++=+|.....
T Consensus 318 L~~Va~G~G~~l 329 (342)
T COG1077 318 LTCVAKGTGKAL 329 (342)
T ss_pred HHHHHhccchhh
Confidence 777777776644
No 27
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=93.39 E-value=0.096 Score=44.07 Aligned_cols=57 Identities=7% Similarity=-0.032 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCC---ce----eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchh
Q psy2594 5 VATRLKWLLNCPD---EA----ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVW 77 (117)
Q Consensus 5 ~~~i~~si~~cp~---d~----l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW 77 (117)
.+.|-++|..+.. |+ |+||+|.+|.+.++|++.+..- +....+|..++-
T Consensus 310 ~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~------------------------~~~~~npdeava 365 (627)
T PRK00290 310 IEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKE------------------------PNKGVNPDEVVA 365 (627)
T ss_pred HHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCC------------------------CCcCcCChHHHH
Confidence 4455666665543 22 9999999999999998665211 112234567788
Q ss_pred hhhhhhcC
Q psy2594 78 FGGSMLAS 85 (117)
Q Consensus 78 ~Ggsila~ 85 (117)
.|+++.|.
T Consensus 366 ~GAa~~aa 373 (627)
T PRK00290 366 IGAAIQGG 373 (627)
T ss_pred HhHHHHHH
Confidence 88888764
No 28
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=93.15 E-value=0.1 Score=43.54 Aligned_cols=58 Identities=7% Similarity=-0.048 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCC---ce----eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccch
Q psy2594 4 LVATRLKWLLNCPD---EA----ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAV 76 (117)
Q Consensus 4 l~~~i~~si~~cp~---d~----l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~a 76 (117)
+.+.|-++|..+.. |+ |+||+|.+|.+.+.+.+.+.. .+....+|..++
T Consensus 307 ~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~------------------------~~~~~~~pdeav 362 (595)
T TIGR02350 307 TKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGK------------------------EPNKSVNPDEVV 362 (595)
T ss_pred HHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCC------------------------cccCCcCcHHHH
Confidence 34455666665433 22 999999999999998865421 122233456777
Q ss_pred hhhhhhhcC
Q psy2594 77 WFGGSMLAS 85 (117)
Q Consensus 77 W~Ggsila~ 85 (117)
-.|+++.|.
T Consensus 363 a~GAa~~aa 371 (595)
T TIGR02350 363 AIGAAIQGG 371 (595)
T ss_pred HHHHHHHHH
Confidence 888888764
No 29
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=92.46 E-value=0.1 Score=39.82 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=36.7
Q ss_pred eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhhhhc
Q psy2594 20 ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLA 84 (117)
Q Consensus 20 l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggsila 84 (117)
++||.+.-+++.+.|+++|... ...+.+..++++++..=+|+++++
T Consensus 217 ~~GGva~n~~~~~~le~~l~~~-------------------~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 217 CTGGLALDAGLLEALKDAIQEA-------------------KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred EECcccccHHHHHHHHHHhccC-------------------CcceEecCCCcchHHHHHHHHHcC
Confidence 9999999999999999988532 123456667788998888999875
No 30
>PRK13411 molecular chaperone DnaK; Provisional
Probab=91.11 E-value=0.24 Score=42.08 Aligned_cols=35 Identities=9% Similarity=-0.039 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCc---e----eecCCCCcccHHHHHHHHH
Q psy2594 4 LVATRLKWLLNCPDE---A----ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 4 l~~~i~~si~~cp~d---~----l~GG~s~~~Gf~~RL~~EL 38 (117)
+.+.|.++|..+..+ + |+||+|.+|.+.++|++.+
T Consensus 310 ~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f 351 (653)
T PRK13411 310 TIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFF 351 (653)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHc
Confidence 345566677665543 2 9999999999999998655
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=90.76 E-value=0.25 Score=39.64 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=33.3
Q ss_pred eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEE-eCCCcccchhhhhhhhcC
Q psy2594 20 ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVI-THHMQRYAVWFGGSMLAS 85 (117)
Q Consensus 20 l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~aW~Ggsila~ 85 (117)
||||++++||+.+.+++-+..-+ +. + .|... ..+. ...+|.|++=+|-.+++.
T Consensus 334 LtGG~a~lpgi~e~~~~~f~~~v--ri-------~---~P~~~-~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 334 LTGGAAQIEGLAACAQRVFHTQV--RI-------G---APLNI-TGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred EeCchhccccHHHHHHHHhCCCe--EE-------e---CCccc-CCChhhcCCcHHHHHHHHHHHhh
Confidence 99999999999999887765321 10 0 01110 0000 023678999899888865
No 32
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=90.60 E-value=0.32 Score=40.90 Aligned_cols=35 Identities=6% Similarity=-0.094 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCC---ce----eecCCCCcccHHHHHHHHH
Q psy2594 4 LVATRLKWLLNCPD---EA----ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 4 l~~~i~~si~~cp~---d~----l~GG~s~~~Gf~~RL~~EL 38 (117)
+.+.|.++|..... |+ |+||+|.+|++.+++.+-+
T Consensus 295 i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f 336 (599)
T TIGR01991 295 TLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF 336 (599)
T ss_pred HHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHh
Confidence 34556666665432 22 9999999999999998755
No 33
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=90.56 E-value=0.34 Score=41.30 Aligned_cols=33 Identities=6% Similarity=-0.108 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCc---e----eecCCCCcccHHHHHHHHH
Q psy2594 6 ATRLKWLLNCPDE---A----ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 6 ~~i~~si~~cp~d---~----l~GG~s~~~Gf~~RL~~EL 38 (117)
+.+.++|.....+ + |+||+|.+|.+.+.+.+.+
T Consensus 338 ~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f 377 (657)
T PTZ00186 338 APCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF 377 (657)
T ss_pred HHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh
Confidence 4455555544332 2 9999999999999988765
No 34
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=90.39 E-value=0.38 Score=40.60 Aligned_cols=35 Identities=6% Similarity=-0.096 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCC---ce----eecCCCCcccHHHHHHHHH
Q psy2594 4 LVATRLKWLLNCPD---EA----ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 4 l~~~i~~si~~cp~---d~----l~GG~s~~~Gf~~RL~~EL 38 (117)
+.+.|.++|..... |+ |+||+|.+|.+.++|.+.+
T Consensus 311 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f 352 (616)
T PRK05183 311 TLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF 352 (616)
T ss_pred HHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHh
Confidence 34556666766543 22 9999999999999988655
No 35
>PLN03184 chloroplast Hsp70; Provisional
Probab=90.22 E-value=0.36 Score=41.19 Aligned_cols=34 Identities=6% Similarity=-0.095 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCc---e----eecCCCCcccHHHHHHHHH
Q psy2594 5 VATRLKWLLNCPDE---A----ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 5 ~~~i~~si~~cp~d---~----l~GG~s~~~Gf~~RL~~EL 38 (117)
.+.|.++|.....+ + |+||+|.+|.+.++|.+.+
T Consensus 349 ~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f 389 (673)
T PLN03184 349 KTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT 389 (673)
T ss_pred HHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh
Confidence 34556666665543 2 9999999999999998765
No 36
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=90.09 E-value=0.34 Score=41.09 Aligned_cols=34 Identities=6% Similarity=-0.022 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCc---e----eecCCCCcccHHHHHHHHH
Q psy2594 5 VATRLKWLLNCPDE---A----ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 5 ~~~i~~si~~cp~d---~----l~GG~s~~~Gf~~RL~~EL 38 (117)
.+.|-++|..+..+ + |+||+|.+|.+.++|.+-+
T Consensus 316 ~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f 356 (653)
T PTZ00009 316 LQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFF 356 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHh
Confidence 34566677766543 2 9999999999999988655
No 37
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=90.05 E-value=0.35 Score=41.21 Aligned_cols=34 Identities=6% Similarity=-0.060 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCC---ce----eecCCCCcccHHHHHHHHH
Q psy2594 5 VATRLKWLLNCPD---EA----ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 5 ~~~i~~si~~cp~---d~----l~GG~s~~~Gf~~RL~~EL 38 (117)
.+.|.++|..+.. |+ |+||+|.+|.+.++|.+.+
T Consensus 351 ~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f 391 (663)
T PTZ00400 351 IEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF 391 (663)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh
Confidence 4455666666543 22 9999999999999998765
No 38
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=89.86 E-value=0.48 Score=39.93 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCC---Cce--eecCCCCcccHHHHHHHHH
Q psy2594 5 VATRLKWLLNCP---DEA--ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 5 ~~~i~~si~~cp---~d~--l~GG~s~~~Gf~~RL~~EL 38 (117)
.+.|-++|.... +|- |+||+|.+|.+.+.|.+.+
T Consensus 294 ~~~i~~~L~~a~~~~Id~ViLvGGssriP~v~~~l~~~f 332 (595)
T PRK01433 294 INIAQECLEQAGNPNIDGVILVGGATRIPLIKDELYKAF 332 (595)
T ss_pred HHHHHHHHhhcCcccCcEEEEECCcccChhHHHHHHHHh
Confidence 344555565543 332 9999999999998888654
No 39
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=88.39 E-value=0.35 Score=39.93 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCC-----ce--eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccch
Q psy2594 4 LVATRLKWLLNCPD-----EA--ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAV 76 (117)
Q Consensus 4 l~~~i~~si~~cp~-----d~--l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~a 76 (117)
+.+.|.++|..+.. |. |+||+|.+|-+.+.|.+.+.. .+....+|..++
T Consensus 311 ~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~------------------------~~~~~~~p~~aV 366 (602)
T PF00012_consen 311 IIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGK------------------------KISKSVNPDEAV 366 (602)
T ss_dssp THHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTS------------------------EEB-SS-TTTHH
T ss_pred cccccccccccccccccccceeEEecCcccchhhhhhhhhcccc------------------------cccccccccccc
Confidence 34566677776543 22 999999999999888755421 122333566777
Q ss_pred hhhhhhhcC
Q psy2594 77 WFGGSMLAS 85 (117)
Q Consensus 77 W~Ggsila~ 85 (117)
=.||+++|.
T Consensus 367 A~GAa~~a~ 375 (602)
T PF00012_consen 367 ARGAALYAA 375 (602)
T ss_dssp HHHHHHHHH
T ss_pred ccccccchh
Confidence 789988874
No 40
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=87.72 E-value=0.61 Score=36.55 Aligned_cols=37 Identities=5% Similarity=-0.093 Sum_probs=27.1
Q ss_pred HHHHHH-HHHhcCCCc------e-eecCCCCcccHHHHHHHHHHh
Q psy2594 4 LVATRL-KWLLNCPDE------A-ECTPNSKHRAKKTWLQRDIKR 40 (117)
Q Consensus 4 l~~~i~-~si~~cp~d------~-l~GG~s~~~Gf~~RL~~EL~~ 40 (117)
|.+.|. +.+.+.+.+ + |+||+|++||+.+++.+.+..
T Consensus 296 i~~~i~~~~L~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 296 ILEIVKQKELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred HHHHHHHHHHHhcCCcccCCCEEEEeChHHcccCHHHHHHHHhCC
Confidence 344554 666665542 2 999999999999999987744
No 41
>PRK13410 molecular chaperone DnaK; Provisional
Probab=87.22 E-value=0.64 Score=39.71 Aligned_cols=34 Identities=6% Similarity=-0.036 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCC---ce----eecCCCCcccHHHHHHHHH
Q psy2594 5 VATRLKWLLNCPD---EA----ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 5 ~~~i~~si~~cp~---d~----l~GG~s~~~Gf~~RL~~EL 38 (117)
.+.|-++|..... |+ |+||+|.+|.+.+.+.+-+
T Consensus 312 ~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f 352 (668)
T PRK13410 312 LRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI 352 (668)
T ss_pred HHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc
Confidence 4455566655433 33 9999999999999987654
No 42
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=86.96 E-value=1 Score=33.43 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCCc--e-eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhh
Q psy2594 4 LVATRLKWLLNCPDE--A-ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGG 80 (117)
Q Consensus 4 l~~~i~~si~~cp~d--~-l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Gg 80 (117)
+...+.+.+...+++ + ++||.+..+++.++|.+.|.. .+..++++.+.+=+|+
T Consensus 190 va~~i~~~~~~~~~~~~Vvl~GGva~n~~l~~~l~~~lg~------------------------~v~~~~~~~~~~AlGa 245 (248)
T TIGR00241 190 IAERVAEMLQRLKIEAPIVFTGGVSKNKGLVKALEKKLGM------------------------KVITPPEPQIVGAVGA 245 (248)
T ss_pred HHHHHHHHHhhcCCCCCEEEECccccCHHHHHHHHHHhCC------------------------cEEcCCCccHHHHHHH
Confidence 455566666666665 3 999999999999998876621 3455666767777777
Q ss_pred hhh
Q psy2594 81 SML 83 (117)
Q Consensus 81 sil 83 (117)
+++
T Consensus 246 Al~ 248 (248)
T TIGR00241 246 ALL 248 (248)
T ss_pred HhC
Confidence 753
No 43
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=86.65 E-value=0.4 Score=35.82 Aligned_cols=62 Identities=19% Similarity=0.136 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCCc---e-eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhh
Q psy2594 4 LVATRLKWLLNCPDE---A-ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFG 79 (117)
Q Consensus 4 l~~~i~~si~~cp~d---~-l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~G 79 (117)
|.+.+...+.+.+.. + ++||......+.+.|.+.|++.++. +.+..+..|.+.+..|
T Consensus 206 la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~-------------------~~~~~~~~~~~~~a~G 266 (271)
T PF01869_consen 206 LAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDALKEKLPK-------------------VPIIIPVEPQYDPAYG 266 (271)
T ss_dssp HHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGGS-HHHHC-------------------CTCECECCGSSHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHHHHHhcCC-------------------CceEECCCCCccHHHH
Confidence 456667777777665 4 8999877766666666666555421 1223444678999999
Q ss_pred hhhhc
Q psy2594 80 GSMLA 84 (117)
Q Consensus 80 gsila 84 (117)
+.++|
T Consensus 267 AallA 271 (271)
T PF01869_consen 267 AALLA 271 (271)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99886
No 44
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=85.24 E-value=2.2 Score=34.76 Aligned_cols=46 Identities=24% Similarity=0.107 Sum_probs=36.9
Q ss_pred eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhhhhc
Q psy2594 20 ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLA 84 (117)
Q Consensus 20 l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggsila 84 (117)
++||.+.-+++...|++.|.... ...+|+.++++++..=+|++++|
T Consensus 387 ftGGvA~N~gvv~aLe~~L~~~~-------------------~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 387 FTGGVAKNEAAVKELRKLIKENY-------------------GEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred EECCccccHHHHHHHHHHHcccc-------------------CCCeEecCCCccHHHHHHHHHhC
Confidence 99999999999999998885431 12356668889999999999875
No 45
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=83.81 E-value=2.2 Score=31.97 Aligned_cols=35 Identities=0% Similarity=-0.020 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCC-ce-eecCCCCcccHHHHHHHHH
Q psy2594 4 LVATRLKWLLNCPD-EA-ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 4 l~~~i~~si~~cp~-d~-l~GG~s~~~Gf~~RL~~EL 38 (117)
+.+.+..-|...++ |+ |+||++++||+.+-++++|
T Consensus 214 MAeIv~~hie~~~i~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 214 MAEIVARHIEGQGITDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred HHHHHHHHhccCCCcceEEecccccCccHHHHHHHHh
Confidence 34566666777665 44 9999999999999999888
No 46
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=82.97 E-value=1.4 Score=34.26 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=33.7
Q ss_pred eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEE-eCCCcccchhhhhhhhcC
Q psy2594 20 ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVI-THHMQRYAVWFGGSMLAS 85 (117)
Q Consensus 20 l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~aW~Ggsila~ 85 (117)
++||.+.-+|+.+.|+++|..- +. .+++|++..=+|++++|.
T Consensus 245 ~~GGva~N~~l~~al~~~Lg~~------------------------v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 245 ITGGIAKNPGVVKRIERILGIK------------------------AVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred EECcccccHHHHHHHHHHhCCC------------------------ceeCCCCccHHHHHHHHHHHH
Confidence 9999999999999998877331 22 255788998999999984
No 47
>PRK11678 putative chaperone; Provisional
Probab=82.34 E-value=1.5 Score=35.77 Aligned_cols=35 Identities=6% Similarity=-0.017 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCC--ce--eecCCCCcccHHHHHHHHH
Q psy2594 4 LVATRLKWLLNCPD--EA--ECTPNSKHRAKKTWLQRDI 38 (117)
Q Consensus 4 l~~~i~~si~~cp~--d~--l~GG~s~~~Gf~~RL~~EL 38 (117)
+.++|-++|..... |. |+||+|.+|++.+.+.+.+
T Consensus 385 i~~~i~~~L~~a~~~~d~VvLvGGsSriP~V~~~l~~~f 423 (450)
T PRK11678 385 ILELVQLALDQAQVKPDVIYLTGGSARSPLIRAALAQQL 423 (450)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHHHC
Confidence 34556666665433 33 9999999999999988654
No 48
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=82.15 E-value=2.2 Score=34.59 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=34.9
Q ss_pred eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhhhhcC
Q psy2594 20 ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLAS 85 (117)
Q Consensus 20 l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggsila~ 85 (117)
++||.+..+|+...|++.|.. ++..|+++++..=+|++++|+
T Consensus 361 ftGGva~N~gvv~ale~~Lg~------------------------~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 361 LVGGTSLIEGLVKALGDLLGI------------------------EVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred EECChhhhHHHHHHHHHHhCC------------------------cEEECCcccHHHHHHHHHHhc
Confidence 899999999999988876622 356677899999999999985
No 49
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=76.24 E-value=4.1 Score=32.83 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=35.9
Q ss_pred eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhhhhcC
Q psy2594 20 ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLAS 85 (117)
Q Consensus 20 l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggsila~ 85 (117)
++||++...++..-|++.|. .+|..|+++++..=+|++++++
T Consensus 348 ~~GGva~n~av~~ale~~lg------------------------~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 348 LQGGVALNKAVVRALEDLLG------------------------RKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EECcchhhHHHHHHHHHHhC------------------------CeeecCCccchhhHHHHHHHHh
Confidence 99999999999988887663 3577888899999999999986
No 50
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=73.48 E-value=13 Score=27.97 Aligned_cols=66 Identities=14% Similarity=-0.032 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCce-eecC-CCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhh
Q psy2594 4 LVATRLKWLLNCPDEA-ECTP-NSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGS 81 (117)
Q Consensus 4 l~~~i~~si~~cp~d~-l~GG-~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggs 81 (117)
|...|.+.+.-.+++. +.|| .+..+-|-+++++.+++.. .+....+.|........++=+||+
T Consensus 233 la~~l~n~~~~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~---------------~~~~~~~~i~~s~~~~~a~~~GAa 297 (303)
T PRK13310 233 LAICLGNILTIVDPHLVVLGGGLSNFDAIYEQLPKRLPRHL---------------LPVARVPRIEKARHGDAGGVRGAA 297 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccChHHHHHHHHHHHHHHh---------------cccccCceEEEcccCchHHHHhHH
Confidence 4556777777778786 4455 4445556666666665432 111113444444444455566888
Q ss_pred hhc
Q psy2594 82 MLA 84 (117)
Q Consensus 82 ila 84 (117)
.++
T Consensus 298 ~~~ 300 (303)
T PRK13310 298 FLH 300 (303)
T ss_pred HHh
Confidence 765
No 51
>PRK13317 pantothenate kinase; Provisional
Probab=71.47 E-value=11 Score=28.78 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=34.8
Q ss_pred eec-CCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhhhhcC
Q psy2594 20 ECT-PNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLAS 85 (117)
Q Consensus 20 l~G-G~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggsila~ 85 (117)
++| |.+..|++.++|.+.++. ..+++..+++++|..=+||++++.
T Consensus 228 f~G~gla~n~~l~~~l~~~l~~---------------------~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 228 YIGSTLTNNPLLQEIIESYTKL---------------------RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred EECcccccCHHHHHHHHHHHhc---------------------CCceEEecCCCchhHHHHHHHHhh
Confidence 888 799999999998865532 124566677889999999998764
No 52
>PRK09557 fructokinase; Reviewed
Probab=68.84 E-value=20 Score=27.10 Aligned_cols=38 Identities=11% Similarity=-0.115 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCce-eecC-CCCcccHHHHHHHHHHhh
Q psy2594 4 LVATRLKWLLNCPDEA-ECTP-NSKHRAKKTWLQRDIKRV 41 (117)
Q Consensus 4 l~~~i~~si~~cp~d~-l~GG-~s~~~Gf~~RL~~EL~~~ 41 (117)
|..++.+.+.-.++|. +.|| .+..+-|-+.|++.+++.
T Consensus 232 La~~l~~l~~~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~ 271 (301)
T PRK09557 232 LAKSLAHVINILDPDVIVLGGGMSNVDRLYPTLPALLKQY 271 (301)
T ss_pred HHHHHHHHHHHhCCCEEEEcCcccchHHHHHHHHHHHHHH
Confidence 4556777777777786 4454 555444555555555443
No 53
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=68.22 E-value=19 Score=27.04 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCce-eecCC-CCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhh
Q psy2594 4 LVATRLKWLLNCPDEA-ECTPN-SKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGS 81 (117)
Q Consensus 4 l~~~i~~si~~cp~d~-l~GG~-s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggs 81 (117)
|...+.+.+.-.++|. +.||. +..+-|-+++++.+++. +....+.+........++=+||+
T Consensus 221 la~~l~~l~~~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~-----------------~~~~~~~i~~s~~~~~~~~~GAa 283 (291)
T PRK05082 221 IARLIADLKATLDCQCVVLGGSVGLAEGYLELVQAYLAQE-----------------PAIYHVPLLAAHYRHDAGLLGAA 283 (291)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccHHHHHHHHHHHHHhc-----------------ccccCCeEEECccCCchhhhhHH
Confidence 4556667777777776 45554 33333444444444332 11113445544444556667888
Q ss_pred hhc
Q psy2594 82 MLA 84 (117)
Q Consensus 82 ila 84 (117)
.++
T Consensus 284 ~~~ 286 (291)
T PRK05082 284 LWA 286 (291)
T ss_pred HHh
Confidence 765
No 54
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=66.73 E-value=3.4 Score=32.07 Aligned_cols=21 Identities=5% Similarity=0.075 Sum_probs=19.2
Q ss_pred eecCCCCcccHHHHHHHHHHh
Q psy2594 20 ECTPNSKHRAKKTWLQRDIKR 40 (117)
Q Consensus 20 l~GG~s~~~Gf~~RL~~EL~~ 40 (117)
|+||.+.++|+.+.|..+|.-
T Consensus 280 L~Ggga~l~gL~~~l~~~l~~ 300 (340)
T PF11104_consen 280 LSGGGARLPGLAEYLSEELGI 300 (340)
T ss_dssp EESGGGGSTTHHHHHHHHHTS
T ss_pred EECCccchhhHHHHHHHHHCC
Confidence 999999999999999988744
No 55
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=58.43 E-value=7.3 Score=29.94 Aligned_cols=21 Identities=0% Similarity=-0.121 Sum_probs=19.2
Q ss_pred eecCCCCcccHHHHHHHHHHh
Q psy2594 20 ECTPNSKHRAKKTWLQRDIKR 40 (117)
Q Consensus 20 l~GG~s~~~Gf~~RL~~EL~~ 40 (117)
|+||.+.++||.+.|++++.-
T Consensus 288 LtGgga~~~gl~~~l~~~l~~ 308 (348)
T TIGR01175 288 LAGGGATLSGLDAAIYQRLGL 308 (348)
T ss_pred EECccccchhHHHHHHHHHCC
Confidence 999999999999999988853
No 56
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=57.65 E-value=7.4 Score=31.06 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCc---e-eecCCCCcccHHHHHHHHHHh
Q psy2594 5 VATRLKWLLNCPDE---A-ECTPNSKHRAKKTWLQRDIKR 40 (117)
Q Consensus 5 ~~~i~~si~~cp~d---~-l~GG~s~~~Gf~~RL~~EL~~ 40 (117)
++.|.++|.+.+.+ + ||||...-+-+.+||++.+..
T Consensus 271 A~sI~~~i~~~~~~~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 271 AQSIADAIRRFPPQPDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp HHHHHHHHHHH-TT-EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred HHHHHHHHHhcCCCCceEEEECCCcCCHHHHHHHHhhCCC
Confidence 45677788876664 3 999999999999999987744
No 57
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=53.74 E-value=54 Score=24.73 Aligned_cols=68 Identities=15% Similarity=-0.034 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCce-eecCC-CC-cccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhh
Q psy2594 4 LVATRLKWLLNCPDEA-ECTPN-SK-HRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGG 80 (117)
Q Consensus 4 l~~~i~~si~~cp~d~-l~GG~-s~-~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Gg 80 (117)
|..+|.+.+.-.++|. +.||. +. .+-|.+++++.++..... +....+.|........++=+|+
T Consensus 239 L~~~i~~~~~~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~--------------~~~~~~~i~~s~~~~~~~~~Ga 304 (318)
T TIGR00744 239 AGAGLADLASLFNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFG--------------GARQVADIIAAQLGNDAGLVGA 304 (318)
T ss_pred HHHHHHHHHHHhCCCEEEECChhhhCcHHHHHHHHHHHHHHhhh--------------cccCCcEEEEcccCCchhhHHH
Confidence 4455666666667676 55553 33 345777777777664311 1112233444433345556788
Q ss_pred hhhcC
Q psy2594 81 SMLAS 85 (117)
Q Consensus 81 sila~ 85 (117)
+.++-
T Consensus 305 a~~~~ 309 (318)
T TIGR00744 305 ADLAR 309 (318)
T ss_pred HHHHH
Confidence 87653
No 58
>PF09337 zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR015416 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents an H2C2-type zinc finger that binds to histone upstream activating sequence (UAS) elements found in histone gene promoters []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=52.78 E-value=14 Score=19.91 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHhcCCC
Q psy2594 2 PPLVATRLKWLLNCPD 17 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~ 17 (117)
|||-+.|.+.|.+|+.
T Consensus 22 ~gm~~~V~~~ir~C~~ 37 (39)
T PF09337_consen 22 PGMKKDVRRVIRSCPQ 37 (39)
T ss_pred cCHHHHHHHHHhcCcc
Confidence 7899999999999974
No 59
>KOG0100|consensus
Probab=50.75 E-value=13 Score=30.73 Aligned_cols=33 Identities=6% Similarity=-0.063 Sum_probs=22.4
Q ss_pred HHHHHHHH-HhcCCCce--eecCCCCcccHHHHHHH
Q psy2594 4 LVATRLKW-LLNCPDEA--ECTPNSKHRAKKTWLQR 36 (117)
Q Consensus 4 l~~~i~~s-i~~cp~d~--l~GG~s~~~Gf~~RL~~ 36 (117)
+.+.+-+| +++.++|- |+||+|.+|-..+-|+.
T Consensus 349 v~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~ 384 (663)
T KOG0100|consen 349 VQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKD 384 (663)
T ss_pred HHHHHhhcCcccccCceEEEecCcccChhHHHHHHH
Confidence 44444444 55666664 99999999987766553
No 60
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=47.48 E-value=12 Score=20.17 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=9.9
Q ss_pred cceecHHHHhhh
Q psy2594 91 EVCHTKAAYEEY 102 (117)
Q Consensus 91 ~~~itr~eY~E~ 102 (117)
..|||++||+|-
T Consensus 24 ~g~IT~eey~eI 35 (40)
T PF09693_consen 24 AGWITKEEYKEI 35 (40)
T ss_pred cCeECHHHHHHh
Confidence 349999999983
No 61
>KOG2960|consensus
Probab=47.02 E-value=18 Score=27.52 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=29.5
Q ss_pred ceeEEEEeCC-CcccchhhhhhhhcCCcccccceecH----HHHhhhCCceEEec
Q psy2594 61 PIDVQVITHH-MQRYAVWFGGSMLASTPEFYEVCHTK----AAYEEYGPSICRHN 110 (117)
Q Consensus 61 ~~~v~v~~~~-~~~~~aW~Ggsila~l~~~~~~~itr----~eY~E~G~~~~~~~ 110 (117)
+.+|.++..+ -|-=-+|+||.+|+.+---.-..+-- --|++.|.-++.++
T Consensus 101 dlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYedegdYVVVKH 155 (328)
T KOG2960|consen 101 DLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYEDEGDYVVVKH 155 (328)
T ss_pred CceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCcccCCCEEEEee
Confidence 4455555533 45667899999998763211111111 24888887776655
No 62
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=46.22 E-value=3.9 Score=27.24 Aligned_cols=72 Identities=15% Similarity=0.328 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhhhhcCCcccccceecHHHHhhhCCceE
Q psy2594 29 AKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSIC 107 (117)
Q Consensus 29 Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~ 107 (117)
=+..+|++|+...... ...+....|+.+.|.+.+....++++| +..+...+..+-...+..+.|.=.|+-.+
T Consensus 28 EIa~~L~remd~~a~~------~~~~r~~aPN~y~V~Ls~~D~~~l~~~-~~~l~~el~~~l~~~a~~qgy~~~G~v~V 99 (116)
T PF12401_consen 28 EIAKALRREMDDQARV------VSRGRTLAPNVYTVELSPEDYERLSPW-GDRLARELADYLAEHAREQGYTFVGPVTV 99 (116)
T ss_dssp HHHHHHHHHHHHT-B---------TT--B---EEEEEEEHHHHHHH-S--SHHHHHHHHHHHHHHHHHHT-B-SS--EE
T ss_pred HHHHHHHHHHHhCCee------cCCCCEEcCeeEEEEECHHHHHHHhhh-HHHHHHHHHHHHHHHHHHCCCeecCCEEE
Confidence 3456666666554211 112233468888888887776788889 66666666666666778888888887554
No 63
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=45.44 E-value=31 Score=17.62 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=13.5
Q ss_pred ecCCCCcccHHHHHHHHHHhh
Q psy2594 21 CTPNSKHRAKKTWLQRDIKRV 41 (117)
Q Consensus 21 ~GG~s~~~Gf~~RL~~EL~~~ 41 (117)
|||.| |-|..+|.+||.+.
T Consensus 11 TnG~s--P~la~~iR~~ie~~ 29 (30)
T PF14824_consen 11 TNGKS--PRLARLIRKEIERL 29 (30)
T ss_dssp ESSS---HHHHHHHHHHHHHH
T ss_pred CCCCC--hHHHHHHHHHHHHh
Confidence 45544 78888888888765
No 64
>PRK09698 D-allose kinase; Provisional
Probab=43.40 E-value=70 Score=24.00 Aligned_cols=68 Identities=16% Similarity=0.039 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCce-eecC-CCCccc-HHHHHHHHHHhhHHHhhhhhhhccCCCCCC-CceeEEEEeCCCcccchhhh
Q psy2594 4 LVATRLKWLLNCPDEA-ECTP-NSKHRA-KKTWLQRDIKRVVDARLKLSETLSGGYIKP-KPIDVQVITHHMQRYAVWFG 79 (117)
Q Consensus 4 l~~~i~~si~~cp~d~-l~GG-~s~~~G-f~~RL~~EL~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~~~~~~~aW~G 79 (117)
|...+.+.+.-.+++. +.|| -+.... |.++|.+++++.+.. + ....+++...+....+.=+|
T Consensus 224 la~~l~~li~~ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~i~~~~~~~~a~~~G 289 (302)
T PRK09698 224 LARAIATSINLFDPDAIILGGGVMDMPAFPRETLIAMIQKYLRK--------------PLPYEVVRFIYASSSDFNGAQG 289 (302)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCchhHHHHHHHHHHHHccC--------------ccccCCcEEEECCcCCcccHHh
Confidence 4556667777777776 4455 444332 467777777765411 1 12234455444445555678
Q ss_pred hhhhcC
Q psy2594 80 GSMLAS 85 (117)
Q Consensus 80 gsila~ 85 (117)
++.++-
T Consensus 290 Aa~~~~ 295 (302)
T PRK09698 290 AAILAH 295 (302)
T ss_pred HHHHHH
Confidence 887653
No 65
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=41.37 E-value=15 Score=20.41 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=11.4
Q ss_pred cccc-ceecHHHHhhh
Q psy2594 88 EFYE-VCHTKAAYEEY 102 (117)
Q Consensus 88 ~~~~-~~itr~eY~E~ 102 (117)
.|.. .|||.+||+|-
T Consensus 25 ~~V~~~~IT~eey~eI 40 (45)
T TIGR01669 25 KFVEKKLITREQYKVI 40 (45)
T ss_pred HHhhcCccCHHHHHHH
Confidence 4444 59999999983
No 66
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=41.22 E-value=54 Score=24.33 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=33.4
Q ss_pred eecCC-CCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhhhhcC
Q psy2594 20 ECTPN-SKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLAS 85 (117)
Q Consensus 20 l~GG~-s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggsila~ 85 (117)
+-|+. -.+|+|.+++++-|+.+++. ...+|.+.... ..+=+||++.|.
T Consensus 191 vDGSv~~~~p~f~~~l~~~l~~L~~~---------------~~~~v~~~~~~---dgsg~GAAi~AA 239 (243)
T PF03727_consen 191 VDGSVYEKYPNFRERLQEALDELLPE---------------EGCKVEFVLSE---DGSGVGAAIAAA 239 (243)
T ss_dssp EESHHHHHSTTHHHHHHHHHHHHSTT----------------CEEEEEEE-S---STHHHHHHHHHH
T ss_pred EeCcceeeCHHHHHHHHHHHHHhccc---------------ccceEEEEEec---CchHHHHHHHHH
Confidence 45553 68999999999999998632 13456666654 346789998875
No 67
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=40.42 E-value=34 Score=27.37 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCC--C-ce-eecCCCCcccHHHHHHHHHH
Q psy2594 5 VATRLKWLLNCP--D-EA-ECTPNSKHRAKKTWLQRDIK 39 (117)
Q Consensus 5 ~~~i~~si~~cp--~-d~-l~GG~s~~~Gf~~RL~~EL~ 39 (117)
.+.|.+++.+.+ . ++ ||||...-|-+.+||+.++.
T Consensus 273 A~sI~~~~~~~~~~~~~vlv~GGGa~N~~Lm~~L~~~l~ 311 (365)
T PRK09585 273 AASIARAVRRLPPGPDELLVCGGGARNPTLMERLAALLP 311 (365)
T ss_pred HHHHHHHHHhccCCCCEEEEECCCcchHHHHHHHHHhcC
Confidence 456777776643 2 34 99999999999999998773
No 68
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=39.53 E-value=93 Score=19.90 Aligned_cols=36 Identities=8% Similarity=-0.063 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCce--eecCCCCcccHHHHHHHHHHh
Q psy2594 5 VATRLKWLLNCPDEA--ECTPNSKHRAKKTWLQRDIKR 40 (117)
Q Consensus 5 ~~~i~~si~~cp~d~--l~GG~s~~~Gf~~RL~~EL~~ 40 (117)
++.+.+.+..+..|+ ++.-.+.-.....++.+++++
T Consensus 39 ~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~ 76 (119)
T cd02067 39 PEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKE 76 (119)
T ss_pred HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHH
Confidence 356667777777777 444323333333445555544
No 69
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=38.03 E-value=13 Score=13.91 Aligned_cols=6 Identities=50% Similarity=1.093 Sum_probs=4.3
Q ss_pred HhcCCC
Q psy2594 12 LLNCPD 17 (117)
Q Consensus 12 i~~cp~ 17 (117)
|++||.
T Consensus 3 i~nCP~ 8 (9)
T PF00220_consen 3 IRNCPI 8 (9)
T ss_pred cccCCC
Confidence 578885
No 70
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.73 E-value=83 Score=20.80 Aligned_cols=41 Identities=7% Similarity=-0.073 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhcCCCceeecCCCCcc--cHHHHHHHHHHhh
Q psy2594 1 MPPLVATRLKWLLNCPDEAECTPNSKHR--AKKTWLQRDIKRV 41 (117)
Q Consensus 1 ~~gl~~~i~~si~~cp~d~l~GG~s~~~--Gf~~RL~~EL~~~ 41 (117)
|..+.+.|-+.|.+-|+-+--=|+-.+| ||..|.-+=|...
T Consensus 1 ~~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~ 43 (105)
T COG0278 1 MMEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC 43 (105)
T ss_pred CchHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc
Confidence 4567788888899888888666666666 8888887666554
No 71
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=36.39 E-value=64 Score=24.72 Aligned_cols=40 Identities=13% Similarity=-0.088 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHhcCCCce--eecCCCCcccHHHHHHHHHHhh
Q psy2594 2 PPLVATRLKWLLNCPDEA--ECTPNSKHRAKKTWLQRDIKRV 41 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~--l~GG~s~~~Gf~~RL~~EL~~~ 41 (117)
|||..++-.+.+.|...+ ++||-=+++...+|+++-+..+
T Consensus 177 ~GI~niv~~~~~~~g~rv~~ViGGFHL~~~~~~~l~~~~~~l 218 (259)
T COG1237 177 PGIVNIVEWAKERSGDRVKAVIGGFHLIGASEERLEEVADYL 218 (259)
T ss_pred ccHHHHHHHHHHhccceeEEEeeeeccCCCcHHHHHHHHHHH
Confidence 799999999999999334 9999999988889999877766
No 72
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=34.56 E-value=1.2e+02 Score=20.44 Aligned_cols=30 Identities=17% Similarity=0.458 Sum_probs=17.8
Q ss_pred chhhhhhhhcCCcccccceecHHHHhhhCCceE
Q psy2594 75 AVWFGGSMLASTPEFYEVCHTKAAYEEYGPSIC 107 (117)
Q Consensus 75 ~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~ 107 (117)
..|+||++......+ -..++++.+.|.+.+
T Consensus 87 ~i~vGG~~~~~~~~~---~~~~~~l~~~G~~~v 116 (137)
T PRK02261 87 LLYVGGNLVVGKHDF---EEVEKKFKEMGFDRV 116 (137)
T ss_pred eEEEECCCCCCccCh---HHHHHHHHHcCCCEE
Confidence 468899875532222 235577888885543
No 73
>COG3976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.98 E-value=59 Score=22.35 Aligned_cols=38 Identities=8% Similarity=0.007 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHhcCCCceeecCCCCcccHHHHHHHHHHh
Q psy2594 2 PPLVATRLKWLLNCPDEAECTPNSKHRAKKTWLQRDIKR 40 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~l~GG~s~~~Gf~~RL~~EL~~ 40 (117)
+++++.|+.+ |..++|+++|-+.--.+|-+-+++-|++
T Consensus 95 evvp~eivkA-QStdVD~iSgAT~tS~aiI~svekaLek 132 (135)
T COG3976 95 EVVPDEIVKA-QSTDVDIISGATLTSRAIIQSVEKALEK 132 (135)
T ss_pred ccccHHHhhc-cccccceeeccccchHHHHHHHHHHHhc
Confidence 4566666554 5678888999999888888888877754
No 74
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=27.42 E-value=29 Score=20.53 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=26.0
Q ss_pred HHHHHhcCCCce--eecCCCCcccHHHHHHHHHHhhH
Q psy2594 8 RLKWLLNCPDEA--ECTPNSKHRAKKTWLQRDIKRVV 42 (117)
Q Consensus 8 i~~si~~cp~d~--l~GG~s~~~Gf~~RL~~EL~~~~ 42 (117)
...+|.++|.++ +-.+...+||+...+...+..++
T Consensus 31 Aa~~i~~l~~~i~~~~~~~~~l~gIG~~ia~kI~E~l 67 (68)
T PF14716_consen 31 AAAAIKALPYPITSGEEDLKKLPGIGKSIAKKIDEIL 67 (68)
T ss_dssp HHHHHHHSSS-HHSHHHHHCTSTTTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHhHhhHHHHHhhCCCCCHHHHHHHHHHH
Confidence 356788888887 32257899999999988887764
No 75
>PF15165 REC114-like: Meiotic recombination protein REC114-like
Probab=27.37 E-value=39 Score=25.61 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=17.3
Q ss_pred eecCCCCcccHHHHHHHHHHhh
Q psy2594 20 ECTPNSKHRAKKTWLQRDIKRV 41 (117)
Q Consensus 20 l~GG~s~~~Gf~~RL~~EL~~~ 41 (117)
||==--.||+|.+.+++||+++
T Consensus 222 lCL~D~nFPaFVe~VEkeLkKL 243 (243)
T PF15165_consen 222 LCLMDQNFPAFVEEVEKELKKL 243 (243)
T ss_pred HHhcCCCcHHHHHHHHHHHhcC
Confidence 3334567999999999999874
No 76
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=26.45 E-value=46 Score=27.15 Aligned_cols=71 Identities=11% Similarity=-0.039 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCC--ce-----eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccch
Q psy2594 4 LVATRLKWLLNCPD--EA-----ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAV 76 (117)
Q Consensus 4 l~~~i~~si~~cp~--d~-----l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~a 76 (117)
+-++|.+.|.+.-. ++ ||||.+.+||+.+=-++=+...+.- | .|....=-.....+|.|++
T Consensus 303 i~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRi---------g---~P~~~~Gl~d~~~~p~fs~ 370 (418)
T COG0849 303 ILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRL---------G---VPLNIVGLTDIARNPAFST 370 (418)
T ss_pred HHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEe---------C---CCccccCchhhccCchhhh
Confidence 34455555665444 22 9999999999986544333322110 0 1211000000123578888
Q ss_pred hhhhhhhcCC
Q psy2594 77 WFGGSMLAST 86 (117)
Q Consensus 77 W~Ggsila~l 86 (117)
=+|.-.++..
T Consensus 371 avGl~~~~~~ 380 (418)
T COG0849 371 AVGLLLYGAL 380 (418)
T ss_pred hHHHHHHHhh
Confidence 8888777653
No 77
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=25.21 E-value=72 Score=25.79 Aligned_cols=15 Identities=7% Similarity=-0.206 Sum_probs=12.6
Q ss_pred eecCCCCcccHHHHH
Q psy2594 20 ECTPNSKHRAKKTWL 34 (117)
Q Consensus 20 l~GG~s~~~Gf~~RL 34 (117)
++||.|+|-||.-=+
T Consensus 261 cvGGGSNfag~~yPf 275 (432)
T COG1350 261 CVGGGSNFAGLTYPF 275 (432)
T ss_pred eccCCCccccccchh
Confidence 899999999987443
No 78
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=24.74 E-value=1.8e+02 Score=21.82 Aligned_cols=38 Identities=11% Similarity=-0.083 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCCce-eecC--CCC-cccHHHHHHHHHHhh
Q psy2594 4 LVATRLKWLLNCPDEA-ECTP--NSK-HRAKKTWLQRDIKRV 41 (117)
Q Consensus 4 l~~~i~~si~~cp~d~-l~GG--~s~-~~Gf~~RL~~EL~~~ 41 (117)
|...|.+.+.-.+++. +.|| .+. .+.+.+++++.+...
T Consensus 235 la~~ianl~~~~~P~~IvigG~g~~~~~~~~~~~l~~~~~~~ 276 (314)
T COG1940 235 LARGLANLINLLDPEVIVIGGGGVSALGDLLLPRLRKLLAKY 276 (314)
T ss_pred HHHHHHHHHHhcCCCeEEEECcccccchhHHHHHHHHHHHHh
Confidence 4556677777775554 5554 332 255666666555554
No 79
>PTZ00107 hexokinase; Provisional
Probab=23.40 E-value=1.5e+02 Score=24.55 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=34.7
Q ss_pred eecC-CCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCcccchhhhhhhhcCC
Q psy2594 20 ECTP-NSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLAST 86 (117)
Q Consensus 20 l~GG-~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~aW~Ggsila~l 86 (117)
+.|+ -..+|+|.+|+++-|+.++. +...+|.+....| .+=+||++.|..
T Consensus 410 vDGSv~~~~p~f~~~~~~~l~~ll~---------------~~~~~v~l~~a~D---GSg~GAAl~AA~ 459 (464)
T PTZ00107 410 IDGSVYVKNPWFRRLLQEYINSILG---------------PDAGNVVFYLADD---GSGKGAAIIAAM 459 (464)
T ss_pred EeCcceecCccHHHHHHHHHHHHhC---------------CCCCcEEEEEccC---chHHHHHHHHHH
Confidence 5565 34699999999999999862 2334566665543 456899998764
No 80
>KOG0421|consensus
Probab=22.53 E-value=70 Score=22.55 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhH
Q psy2594 30 KKTWLQRDIKRVV 42 (117)
Q Consensus 30 f~~RL~~EL~~~~ 42 (117)
...||++||-.+.
T Consensus 30 V~KRLq~ELm~Lm 42 (175)
T KOG0421|consen 30 VTKRLQSELMGLM 42 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 4579999999986
No 81
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=22.34 E-value=41 Score=24.66 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.3
Q ss_pred HHHhcCCCceeecCCCC
Q psy2594 10 KWLLNCPDEAECTPNSK 26 (117)
Q Consensus 10 ~si~~cp~d~l~GG~s~ 26 (117)
++|+.||.|.++|+.-.
T Consensus 122 kCiqaCpvdAivg~~~~ 138 (198)
T COG2878 122 KCIQACPVDAIVGATKA 138 (198)
T ss_pred HHHHhCChhhhhccchh
Confidence 58999999999988643
No 82
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=22.24 E-value=1.8e+02 Score=17.14 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHhcCCCce----------------eecCCCCcccHHHHHHHHHHhhH
Q psy2594 2 PPLVATRLKWLLNCPDEA----------------ECTPNSKHRAKKTWLQRDIKRVV 42 (117)
Q Consensus 2 ~gl~~~i~~si~~cp~d~----------------l~GG~s~~~Gf~~RL~~EL~~~~ 42 (117)
|||...|..++.+...++ ++-+. +.-.++|+++|..+.
T Consensus 13 pGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 13 PGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELA 66 (76)
T ss_dssp TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHH
Confidence 899999999999988776 22222 555688888888875
Done!