RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2594
(117 letters)
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 152 bits (385), Expect = 8e-46
Identities = 56/83 (67%), Positives = 70/83 (84%)
Query: 34 LQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVC 93
LQRD+++ VD RLK +E LSGG +KP PIDV V++H QRYAVW+GGSMLAS+PEF +VC
Sbjct: 332 LQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVC 391
Query: 94 HTKAAYEEYGPSICRHNPVFGTM 116
HTKA Y+EYGPSICR+N VF ++
Sbjct: 392 HTKAEYDEYGPSICRYNNVFHSV 414
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 75.8 bits (187), Expect = 2e-17
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 34 LQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVC 93
L++++K++ PK + V+VI ++Y+VW GGS+LAS F ++
Sbjct: 311 LEKELKQLA----------------PKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMW 354
Query: 94 HTKAAYEEYGPSICRHNP 111
TK YEE G I
Sbjct: 355 ITKKEYEESGSQIVERKC 372
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 57.4 bits (139), Expect = 6e-11
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 57 IKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRH 109
+ P V VI W G S+LAS F ++ TK YEE+GP I +
Sbjct: 389 LAPSIWKVSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQE 441
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 51.8 bits (125), Expect = 5e-09
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 17/75 (22%)
Query: 34 LQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQR-YAVWFGGSMLASTPEFYEV 92
L++++ + SG +K +I +R Y+ W GGS+LAS F ++
Sbjct: 304 LEKELAQ---------LAPSGVKVK-------IIAPPNERKYSAWIGGSILASLGTFQQM 347
Query: 93 CHTKAAYEEYGPSIC 107
+K YEE+G S+
Sbjct: 348 WVSKQEYEEHGSSVV 362
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 50.2 bits (120), Expect = 2e-08
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 57 IKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSI 106
+ P + ++V+ ++Y+VW GGS+L+S P F ++ TK Y+E GPSI
Sbjct: 323 LAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSI 372
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 47.0 bits (111), Expect = 3e-07
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 57 IKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSI 106
+ P + +++I ++Y+VW GGS+LAS F ++ +K Y+E GPSI
Sbjct: 321 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSI 370
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 40.7 bits (95), Expect = 5e-05
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 59 PKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSI 106
PK I +++ ++++ + GGS+LAS F ++ +K ++EYG I
Sbjct: 327 PKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVI 374
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 29.5 bits (66), Expect = 0.32
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 59 PKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGT 115
PKP+ +V Q YA+ GG++L + + + KA + + GP + +P +GT
Sbjct: 94 PKPVIARV-----QGYAIG-GGNVLVTICDL-TIASEKAQFGQVGPKVGSVDPGYGT 143
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 29.7 bits (66), Expect = 0.34
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 47 KLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSI 106
+LS L+ + P + +QV +R++ W GGS+ + + Y+E GPSI
Sbjct: 312 RLSNELTN--LVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSI 369
>gnl|CDD|218073 pfam04412, DUF521, Protein of unknown function (DUF521). Family of
hypothetical proteins.
Length = 397
Score = 27.5 bits (62), Expect = 1.4
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 96 KAAYEEYGPSICRHNPVFGTM 116
KAA+ Y P +C + FG++
Sbjct: 373 KAAH--YLPGMCGVDVAFGSL 391
>gnl|CDD|184992 PRK15032, PRK15032, trimethylamine N-oxide reductase cytochrome
c-type subunit; Provisional.
Length = 390
Score = 26.5 bits (58), Expect = 3.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 80 GSMLASTPEFYEVCHT-KAAYEEYGPSI 106
G + ST EF CH+ + YEEY S+
Sbjct: 38 GIKVTSTTEFCVSCHSMQPVYEEYKQSV 65
>gnl|CDD|180528 PRK06321, PRK06321, replicative DNA helicase; Provisional.
Length = 472
Score = 26.0 bits (57), Expect = 5.5
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 52 LSGGYIKPKPIDVQVITHHMQRY---AVWFGGSMLASTPEFYEVCHTKAAYEEY 102
L + KPIDV + ++R V G S L + EF T A EEY
Sbjct: 61 LQDAFKSDKPIDVHLAGEELKRRNQLNVIGGPSYLITLAEF---AGTSAYIEEY 111
>gnl|CDD|217463 pfam03264, Cytochrom_NNT, NapC/NirT cytochrome c family, N-terminal
region. Within the NapC/NirT family of cytochrome c
proteins, some members, such as NapC and NirT, bind four
haem groups, while others, such as TorC, bind five
haems. This family aligns the common N-terminal region
that contains four haem-binding C-X(2)-CH motifs.
Length = 174
Score = 25.7 bits (57), Expect = 6.0
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 77 WFG---GSMLASTPEFYEVCHT-KAAYEEYGPSI 106
W G +T EF CH + Y EY SI
Sbjct: 23 WGGFNTALEATNTEEFCISCHEMQPNYAEYQQSI 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.439
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,055,063
Number of extensions: 500883
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 19
Length of query: 117
Length of database: 10,937,602
Length adjustment: 80
Effective length of query: 37
Effective length of database: 7,389,282
Effective search space: 273403434
Effective search space used: 273403434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)