RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2594
         (117 letters)



>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 258

 Score =  114 bits (286), Expect = 2e-33
 Identities = 74/97 (76%), Positives = 80/97 (82%)

Query: 21  CTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGG 80
              ++  R     LQRD+KR VDARLKLSE LSGG +KPKPIDVQVITHHMQRYAVWFGG
Sbjct: 162 SGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGG 221

Query: 81  SMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGTMT 117
           SMLASTPEFY+VCHTK  YEE GPSICRHNPVFG M+
Sbjct: 222 SMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS 258


>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 225

 Score = 64.7 bits (157), Expect = 1e-14
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 57  IKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSI 106
           + P  + +++I    ++Y+VW GGS+LAS   F ++  TK  Y+E GPSI
Sbjct: 174 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 223


>d1ia9a_ d.144.1.5 (A:) Trp Ca-channel kinase domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 278

 Score = 24.9 bits (54), Expect = 2.7
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 4  LVATRLKWLLNCPDEAECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKP 59
           V  R + +     E E +P+  + +  +W Q  +   ++      E + GG  + 
Sbjct: 22 PVPPRGEPVTVYRLE-ESSPSILNNSMSSWSQLGLCAKIE--FLSKEEMGGGLRRA 74


>d1tz0a_ d.58.4.5 (A:) Hypothetical protein BC2969 {Bacillus cereus
           [TaxId: 1396]}
          Length = 108

 Score = 24.1 bits (52), Expect = 3.1
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 83  LASTPEFYEVCHTKAAYE 100
           +      Y V  +KAAY+
Sbjct: 91  INVDHAVYYVKSSKAAYQ 108


>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 242

 Score = 23.4 bits (50), Expect = 8.5
 Identities = 12/57 (21%), Positives = 20/57 (35%)

Query: 56  YIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPV 112
            +  + +   ++        V F   +  S+ +      TKA   E GP   R N V
Sbjct: 119 DMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSV 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,895
Number of extensions: 20545
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 8
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)