BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2599
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ ++++N+ VKL +WD G+
Sbjct: 21 GKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ +D+F + T G DF +K + I + VKL LWD G+
Sbjct: 32 GKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ +D+F + T G DF +K + I + VKL LWD G+
Sbjct: 19 GKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ +D+F + T G DF +K + I + VKL LWD G+
Sbjct: 15 GKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ +D+F + T G DF +K + I + VKL +WD G+
Sbjct: 15 GKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ +D+F + T G DF +K + I + VKL +WD G+
Sbjct: 15 GKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R++ D +T Y T G DF +K + + + VKL +WD G+
Sbjct: 20 GKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R++ D +T Y T G DF +K + + + VKL +WD G+
Sbjct: 20 GKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R++ D +T Y T G DF +K + + + VKL +WD G+
Sbjct: 33 GKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G +C R+ F+ + T G DF +K L IQ + VKL +WD G+ E + ++Y
Sbjct: 41 GKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRTITQSY 98
Query: 72 LSSAN 76
SAN
Sbjct: 99 YRSAN 103
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 11 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 58
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 1 MAPLYIKVLTEGTS---CFSTRYTQDEFTRQYYPTSGPDFHLKLLTI-QNRGVKLILWDI 56
M L I VL +G S +T + Q+ F +QY T G DF L+ +T+ N V L +WDI
Sbjct: 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63
Query: 57 GGK 59
GG+
Sbjct: 64 GGQ 66
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
Length = 181
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 21 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
Length = 175
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 21 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 18 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 28 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 18 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 37 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 10 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 57
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 45 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + TR+ D F Y T G DF K + +++R V+L LWD G+ E L+ +Y
Sbjct: 13 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSLIPSY 70
Query: 72 LSSANIS 78
+ + ++
Sbjct: 71 IRDSTVA 77
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + TR+ D F Y T G DF K + +++R V+L LWD G+ E L+ +Y
Sbjct: 14 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSLIPSY 71
Query: 72 LSSANIS 78
+ + ++
Sbjct: 72 IRDSTVA 78
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + TR+ D F Y T G DF K + +++R V+L LWD G+ E L+ +Y
Sbjct: 26 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSLIPSY 83
Query: 72 LSSANIS 78
+ + ++
Sbjct: 84 IRDSTVA 90
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 28 GKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G +C R+TQ F T G DF +K + I VKL +WD G+ E + ++Y
Sbjct: 38 GKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--ERFRSITQSY 95
Query: 72 LSSAN 76
SAN
Sbjct: 96 YRSAN 100
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S RY + FT+ Y T G DF + + + + V+L+LWD G+ E + K Y
Sbjct: 17 GKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ--EEFDAITKAY 74
Query: 72 LSSAN 76
A
Sbjct: 75 YRGAQ 79
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + TR+ D F Y T G DF K + +++R V+L LWD G E L+ +Y
Sbjct: 18 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL--ERFRSLIPSY 75
Query: 72 LSSANIS 78
+ + ++
Sbjct: 76 IRDSTVA 82
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + TR+ D F Y T G DF K + +++R ++L LWD G+ E L+ +Y
Sbjct: 18 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ--ERFRSLIPSY 75
Query: 72 LSSA 75
+ +
Sbjct: 76 IRDS 79
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C R+++D F + T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C R+++D F + T G DF ++ + + + +KL +WD G+
Sbjct: 18 GKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + TR+ D F Y T G DF K + +++R V+L LWD G E L+ +Y
Sbjct: 28 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL--ERFRSLIPSY 85
Query: 72 LSSANIS 78
+ + ++
Sbjct: 86 IRDSTVA 92
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G + F RY D FT + T G DF +K + ++ +KL +WD G+
Sbjct: 34 GKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G + F RY D FT + T G DF +K + ++ +KL +WD G+
Sbjct: 17 GKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S F R ++EF T G DF +K L + L LWD G+ E + K+Y
Sbjct: 40 GKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ--ERFRSIAKSY 97
Query: 72 LSSAN 76
A+
Sbjct: 98 FRKAD 102
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G + F RY D FT + T G DF +K + + VKL +WD G+
Sbjct: 35 GKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67
G + +Y +F+ QY T G DF K + + +R V + +WD G+ S G+
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV 75
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + F RY D FT + T G DF +K + ++ +KL +WD G
Sbjct: 20 GKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + TR+ D F Y T G DF K + +++R ++L LWD G
Sbjct: 25 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67
G + +Y +F+ QY T G DF K + + +R V + +WD G+ S G+
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV 75
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67
G + +Y +F+ QY T G DF K + + +R V + +WD G+ S G+
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV 75
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S +R+T DEF + T G +F + + ++N+ +K +WD G
Sbjct: 22 GKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAG 68
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G SC ++T F + T G +F +++TI + +KL +WD G+ ES + ++Y
Sbjct: 22 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ--ESFRSITRSY 79
Query: 72 LSSA 75
A
Sbjct: 80 YRGA 83
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S R+T D F + T G DF +K +++ KL +WD G+
Sbjct: 27 GKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67
G + +Y +F+ QY T G DF K + + +R V + +WD G S G+
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGV 75
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + R+T D F T G DF +K + ++ + ++L +WD G+ +S + Y
Sbjct: 38 GKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS--ITSAY 95
Query: 72 LSSAN 76
SA
Sbjct: 96 YRSAK 100
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLI-LWDIGGKANESSAGL 67
G + RY D++++QY T G DF K +T+ V + +WD G+ S G+
Sbjct: 20 GKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGV 76
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S R+ + F+ Y T G DF ++ + I VKL +WD G+
Sbjct: 21 GKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S R+ QD F PT G F K + N K ++WD G+
Sbjct: 35 GKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG-VKLILWDIGGKANESSAGLVKT 70
G + F R+ EF ++Y PT G + H L+ NRG +K +WD G+ E GL
Sbjct: 22 GKTTFVKRHLTGEFEKKYVPTLGVEVH-PLVFHTNRGPIKFNVWDTAGQ--EKFGGLRDG 78
Query: 71 YLSSANIS 78
Y A +
Sbjct: 79 YYIQAQCA 86
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG-VKLILWDIGGKANESSAGLVKT 70
G + F R+ EF ++Y PT G + H L+ NRG +K +WD G+ E GL
Sbjct: 22 GKTTFVKRHLTGEFEKKYVPTLGVEVH-PLVFHTNRGPIKFNVWDTAGQ--EKFGGLRDG 78
Query: 71 YLSSANIS 78
Y A +
Sbjct: 79 YYIQAQCA 86
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G SC ++T F + T G +F +++ I + +KL +WD G+ ES + ++Y
Sbjct: 33 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ--ESFRSITRSY 90
Query: 72 LSSA 75
A
Sbjct: 91 YRGA 94
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + TR+ D F Y T G DF K L + V+L LWD G+ E L+ +Y
Sbjct: 13 GKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ--ERFRSLIPSY 70
Query: 72 LSSA 75
+ +
Sbjct: 71 IRDS 74
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S +R+T++EF T G +F + L I+ + +K +WD G+
Sbjct: 25 GKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S R+ +D F PT G F K + QN K ++WD G+
Sbjct: 17 GKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ +D F PT G F K + QN K ++WD G
Sbjct: 18 GKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With
Rab33 Gtpase Bound To Gdp And Alf3
Length = 198
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C + R+ F + T G DF + + I +K+ LWD G+
Sbjct: 41 GKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C + R+ F + T G DF + + I +K+ LWD G+
Sbjct: 32 GKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGK 59
G S +R+T+DEF + T G +F K + ++ N+ +K +WD G+
Sbjct: 19 GKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 7 KVLTEGTSCFST-----RYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
KV+ G C RY +++F ++ T G F K L I + V L +WD G+
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G SC ++T+ +F T G +F +++ + + +KL +WD G+ E + ++Y
Sbjct: 27 GKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ--ERFRAVTRSY 84
Query: 72 LSSA 75
A
Sbjct: 85 YRGA 88
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60
G SC ++T+ +F T G +F +++ + + +KL +WD G+
Sbjct: 42 GKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC ++ +++F + T G +F +++ + + VKL +WD G+
Sbjct: 37 GKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S RY ++F Q + T G +F + L + R V L +WD G+
Sbjct: 19 GKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++DEF Y PT ++ + + + + V+L LWD G+ +
Sbjct: 37 GKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S +R+T++EF + T G +F + + + + +K +WD G+
Sbjct: 17 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S +R+T++EF + T G +F + + + + +K +WD G+
Sbjct: 32 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S +R+T++EF + T G +F + + + + +K +WD G+
Sbjct: 41 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 12 GTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C R+ F + T G DF K+L + VKL +WD G+
Sbjct: 22 GKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC ++ + +F T G +F K++ + + VKL +WD G+
Sbjct: 22 GKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
Length = 172
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S +R+T++EF + T G +F + + + + +K +WD G
Sbjct: 20 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 66
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S +R+T++EF + T G +F + + + + +K +WD G
Sbjct: 17 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC ++ + +F T G +F K++ + + VKL +WD G+
Sbjct: 23 GKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S R+ +D+F T G F + L + + VK +WD G+
Sbjct: 24 GKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S +R+T++EF + T G +F + + + + +K +WD G
Sbjct: 23 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 69
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S +R+T++EF + T G +F + + + + +K +WD G
Sbjct: 41 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 87
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++D+F Y PT ++ + + + + V+L LWD G+ +
Sbjct: 37 GKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++D+F Y PT ++ + + + + V+L LWD G+ +
Sbjct: 37 GKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G SC ++ + +F T G +F K++ + + VKL +WD G
Sbjct: 20 GKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 66
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++D+F Y PT ++ + + + + V+L LWD G+ +
Sbjct: 18 GKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++D+F Y PT ++ + + + + V+L LWD G+ +
Sbjct: 18 GKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++D+F Y PT ++ + + + + V+L LWD G+ +
Sbjct: 19 GKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++D+F Y PT ++ + + + + V+L LWD G+ +
Sbjct: 21 GKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++D+F Y PT ++ + + + + V+L LWD G+ +
Sbjct: 19 GKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++D+F Y PT ++ + + + + V+L LWD G+ +
Sbjct: 17 GKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++D+F Y PT ++ + + + + V+L LWD G+ +
Sbjct: 20 GKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSA 65
G +C +++D+F Y PT ++ + + + + V+L LWD G+ + A
Sbjct: 17 GKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRA 69
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C +++D+F Y PT ++ + + + + V+L LWD G+ +
Sbjct: 19 GKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F+ +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 25 GKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 73
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S RY ++F Q + T G +F K L + V + +WD G+
Sbjct: 23 GKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
Length = 177
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S RY ++F Q + T G +F K L + V + +WD G+
Sbjct: 19 GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
Length = 177
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S RY ++F Q + T G +F K L + V + +WD G+
Sbjct: 21 GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 24 EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN---------ESSAGLV 68
+F + T P + T+++RG KL +WD+GG+ + ES+ GL+
Sbjct: 37 KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 24 EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN---------ESSAGLV 68
+F + T P + T+++RG KL +WD+GG+ + ES+ GL+
Sbjct: 37 KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + ++ V L LWD G+ +
Sbjct: 22 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQED 70
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + +R+T++EF+ T G +F + + + VK +WD G
Sbjct: 22 GKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 68
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 24 EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN---------ESSAGLV 68
+F + T P + T+++RG KL +WD+GG+ + ES+ GL+
Sbjct: 37 KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + +R+T++EF+ T G +F + + + VK +WD G
Sbjct: 37 GKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 83
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + ++ V L LWD G+ +
Sbjct: 21 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQED 69
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 24 EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN---------ESSAGLV 68
+F + T P + T+++RG KL +WD+GG+ + ES+ GL+
Sbjct: 35 KFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 88
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + ++ V L LWD G+ +
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQED 63
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 34 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 82
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 19 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 67
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 17 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 65
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
Length = 184
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 22 GKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 70
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 42 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 90
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 17 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 65
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 7 KVLTEGTSCFST-----RYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
KV+ G C RY +++F ++ T F K L I + V L +WD G+
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 62 ESSAG 66
+ G
Sbjct: 82 FHALG 86
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 16 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 64
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 16 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 64
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G + RY +++F ++ T F K L I + V L +WD G+
Sbjct: 18 GKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F Y PT +F ++ + V L LWD G+ +
Sbjct: 18 GKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 66
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F +Y PT ++ ++ + + V L LWD G+ +
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F Y PT +F ++ + V L LWD G+ +
Sbjct: 20 GKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQED 68
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG----------VKLILWDIGG 58
G + F RYT ++F ++ T G DF K + +G V L LWD G
Sbjct: 23 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAG 79
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG----------VKLILWDIGGK 59
G + F RYT ++F ++ T G DF K + +G V L LWD G+
Sbjct: 37 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 24 EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
+F + T P + T+++RG KL +WD+GG
Sbjct: 20 KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGG 54
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG----------VKLILWDIGG 58
G + F RYT ++F ++ T G DF K + +G V L LWD G
Sbjct: 23 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAG 79
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG----------VKLILWDIGG 58
G + F RYT ++F ++ T G DF K + +G V L LWD G
Sbjct: 23 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAG 79
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG----------VKLILWDIGG 58
G + F RYT ++F ++ T G DF K + +G V L LWD G
Sbjct: 23 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAG 79
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63
G +C YT ++F Y PT +F + + + V L LWD G+ + S
Sbjct: 21 GKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGQIVNLGLWDTAGQEDYS 71
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT + F +Y PT ++ ++ + + V L LWD G
Sbjct: 18 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 63
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT + F +Y PT ++ ++ + + V L LWD G
Sbjct: 42 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 87
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT + F +Y PT ++ ++ + + V L LWD G
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT + F +Y PT ++ ++ + + V L LWD G
Sbjct: 15 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 60
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
Length = 180
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C YT + F Y PT +F ++ + V L LWD G+ +
Sbjct: 18 GKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT + F +Y PT ++ ++ + + V L LWD G
Sbjct: 167 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 212
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT + F +Y PT ++ ++ + + V L LWD G
Sbjct: 167 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 212
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT + F +Y PT ++ ++ + + V L LWD G
Sbjct: 167 GKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAG 212
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 4/29 (13%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
PT G F++K ++Q++G KL +WDIGG+
Sbjct: 46 PTQG--FNIK--SVQSQGFKLNVWDIGGQ 70
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
Length = 189
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 4/29 (13%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
PT G F++K ++Q++G KL +WDIGG+
Sbjct: 47 PTQG--FNIK--SVQSQGFKLNVWDIGGQ 71
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 4/29 (13%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
PT G F++K ++Q++G KL +WDIGG+
Sbjct: 34 PTQG--FNIK--SVQSQGFKLNVWDIGGQ 58
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals
A Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S + ++ DEF Y PT D + K + + V++ + D G+ E A + Y
Sbjct: 30 GKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ--EDYAAIRDNY 86
Query: 72 LSS 74
S
Sbjct: 87 FRS 89
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S + ++ DEF Y PT D + K + + V++ + D G+ E A + Y
Sbjct: 18 GKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ--EDYAAIRDNY 74
Query: 72 LSS 74
S
Sbjct: 75 FRS 77
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S + ++ DEF Y PT D + K + + V++ + D G+ E A + Y
Sbjct: 26 GKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ--EDYAAIRDNY 82
Query: 72 LSS 74
S
Sbjct: 83 FRS 85
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S + ++ DEF Y PT D + K + + V++ + D G+ E A + Y
Sbjct: 16 GKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ--EDYAAIRDNY 72
Query: 72 LSS 74
S
Sbjct: 73 FRS 75
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G F++K ++Q++G KL +WDIGG
Sbjct: 34 PTQG--FNIK--SVQSQGFKLNVWDIGG 57
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G + F +F PT G F+++ +T N +KL WDIGG+
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQ 77
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G + F +F PT G F+++ +T N +KL WDIGG+
Sbjct: 43 GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQ 86
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S + ++ DEF Y PT D + K + + V++ + D G E A + Y
Sbjct: 18 GKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGL--EDYAAIRDNY 74
Query: 72 LSS 74
S
Sbjct: 75 FRS 77
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 13 TSCFSTRYTQDEFTRQYYPTSGPDFH--LKLLTIQNR 47
TS TRY DEFT Q + PD + L LL + R
Sbjct: 291 TSEVDTRYFDDEFTAQSITITPPDRYDSLGLLELDQR 327
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 13 TSCFSTRYTQDEFTRQYYPTSGPDFH--LKLLTIQNR 47
TS TRY DEFT Q + PD + L LL + R
Sbjct: 286 TSEVDTRYFDDEFTAQSITITPPDRYDSLGLLELDQR 322
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S + ++ DEF Y PT D + K + + V++ + D G E A + Y
Sbjct: 15 GKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGL--EDYAAIRDNY 71
Query: 72 LSSAN 76
S
Sbjct: 72 FRSGE 76
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 13 TSCFSTRYTQDEFTRQYYPTSGPDFH--LKLLTIQNR 47
TS TRY DEFT Q + PD + L LL + R
Sbjct: 286 TSEVDTRYFDDEFTAQSITITPPDRYDSLGLLELDQR 322
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + ++ DEF Y PT D + K + + V++ + D G
Sbjct: 19 GKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAG 64
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 13 TSCFSTRYTQDEFTRQYYPTSGPDFH--LKLLTIQNR 47
TS TRY DEFT Q + PD + L LL + R
Sbjct: 289 TSEVDTRYFDDEFTAQSITITPPDRYDSLGLLELDQR 325
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 13 TSCFSTRYTQDEFTRQYYPTSGPDFH--LKLLTIQNR 47
TS TRY DEFT Q + PD + L LL + R
Sbjct: 286 TSEVDTRYFDDEFTAQSITITPPDRYDSLGLLELDQR 322
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61
G +C Y D F +Y PT D + +T+ + L L+D G+ +
Sbjct: 30 GKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQED 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,331,914
Number of Sequences: 62578
Number of extensions: 79018
Number of successful extensions: 315
Number of sequences better than 100.0: 157
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 157
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)