BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2599
(78 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q22908|RASEF_CAEEL Ras and EF-hand domain-containing protein homolog OS=Caenorhabditis
elegans GN=tag-312 PE=3 SV=2
Length = 656
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S F R + +FT Q T G DFH+K + + R V L LWD G+ E L K+Y
Sbjct: 473 GKSSFVMRVIRRQFTNQLPSTLGVDFHVKTVNVDGRNVALQLWDTAGQ--ERFRSLCKSY 530
Query: 72 LSSAN 76
A+
Sbjct: 531 FRRAD 535
>sp|Q619T5|RASEF_CAEBR Ras and EF-hand domain-containing protein homolog OS=Caenorhabditis
briggsae GN=tag-312 PE=3 SV=1
Length = 634
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S F R + +FT Q T G DFH+K + + R V L LWD G+ E L K+Y
Sbjct: 451 GKSSFVMRVIRRQFTNQLPSTLGVDFHVKTVNVDGRNVALQLWDTAGQ--ERFRSLCKSY 508
Query: 72 LSSAN 76
A+
Sbjct: 509 FRRAD 513
>sp|P41924|RYL1_YARLI Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL1 PE=3 SV=1
Length = 203
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ +D+FT + T G DF ++ + I N+ VKL +WD G+
Sbjct: 23 GKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQ 70
>sp|P07560|SEC4_YEAST Ras-related protein SEC4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC4 PE=1 SV=1
Length = 215
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ +D+F + T G DF +K + I + VKL LWD G+
Sbjct: 32 GKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
>sp|O42819|SEC4_CANGA Ras-related protein SEC4 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC4
PE=3 SV=1
Length = 215
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ +D+F + T G DF +K + I + VKL LWD G+
Sbjct: 32 GKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SCF R+ D + Y T G DF ++ + ++ + VKL +WD G+
Sbjct: 20 GKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQ 67
>sp|P34141|RABA_DICDI Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2
SV=2
Length = 201
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G S R+T+D FT Y T G DF +K + I+ + +KL +WD G+
Sbjct: 20 GKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQ 67
>sp|Q8MXQ2|RB32C_DICDI Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C
PE=3 SV=2
Length = 224
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 4 LYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63
L + L G + RY + F +Y PT G DF K+L I + V L LWDI G+ E
Sbjct: 32 LVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVLEIMGQKVLLQLWDIAGQ--ER 89
Query: 64 SAGLVKTYLSSAN 76
+ + Y +A+
Sbjct: 90 FGHMTRVYFQNAH 102
>sp|Q9SMR4|RAH1C_ARATH Ras-related protein RABH1c OS=Arabidopsis thaliana GN=RABH1C PE=1
SV=1
Length = 214
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + TR+ D+F Y PT G DF K + +++R V+L LWD G+ E L+ +Y
Sbjct: 21 GKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSLIPSY 78
Query: 72 LSSANIS 78
+ ++++
Sbjct: 79 IRDSSVA 85
>sp|Q54RY4|RABV_DICDI Ras-related protein RabV OS=Dictyostelium discoideum GN=rabV PE=3
SV=2
Length = 233
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWD 55
G S R T+DEF QY PT G DF K++ I+ KL +WD
Sbjct: 20 GKSSLLIRATKDEFNSQYIPTIGIDFDYKIMEIKGEKYKLQIWD 63
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C R+ +D F Y T G DF ++ + I+ + +KL +WD G+
Sbjct: 20 GKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQ 67
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R++ D +T Y T G DF +K + + + VKL +WD G+
Sbjct: 20 GKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Length = 217
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+T D FT + T G DF +K + + + VKL +WD G+
Sbjct: 25 GKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQ 72
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C R+ +D F Y T G DF ++ + I+ + +KL +WD G+
Sbjct: 20 GKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQ 67
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+++D FT + T G DF ++ + ++ + +KL +WD G+
Sbjct: 27 GKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQ 74
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C R+ +D F Y T G DF ++ + I+ + +KL +WD G+
Sbjct: 20 GKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQ 67
>sp|P35286|RAB13_RAT Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2
SV=2
Length = 203
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C R+ +D F Y T G DF ++ + I+ + +KL +WD G+
Sbjct: 20 GKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQ 67
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ ++ + VKL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQ 67
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G +C R+ +D F Y T G DF ++ + I+ + +KL +WD G+
Sbjct: 20 GKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQ 67
>sp|Q91YQ1|RAB7L_MOUSE Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1
Length = 204
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQN-RGVKLILWDIGGK 59
G + RY+QD F++ Y T G DF LK+L + V+L LWDI G+
Sbjct: 19 GKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQ 67
>sp|Q63481|RAB7L_RAT Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2
SV=1
Length = 204
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQN-RGVKLILWDIGGK 59
G + RY+QD F++ Y T G DF LK+L + V+L LWDI G+
Sbjct: 19 GKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQ 67
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G +C R+ F+ + T G DF +K L IQ + VKL +WD G+ E + ++Y
Sbjct: 30 GKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRTITQSY 87
Query: 72 LSSAN 76
SAN
Sbjct: 88 YRSAN 92
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ypt-1 PE=3 SV=1
Length = 203
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + VKL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQ 67
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ryh1 PE=1 SV=1
Length = 201
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + TR+ D+F Y T G DF K + +++R V+L LWD G+ E L+ +Y
Sbjct: 23 GKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSLIPSY 80
Query: 72 LSSANIS 78
+ ++++
Sbjct: 81 IRDSSVA 87
>sp|Q99KL7|RAB28_MOUSE Ras-related protein Rab-28 OS=Mus musculus GN=Rab28 PE=2 SV=1
Length = 221
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 4 LYIKVLTEGTS---CFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGK 59
L I VL +GTS +T + Q+ F +QY T G DF L+ +T+ N V L +WDIGG+
Sbjct: 13 LKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQ 72
>sp|Q9HDY0|YPT71_SCHPO GTP-binding protein ypt71 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ypt71 PE=3 SV=1
Length = 208
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67
G +C ++ +F+R+Y T G DF K + + ++ V L LWD G+ S G+
Sbjct: 20 GKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGM 75
>sp|P51158|RAB28_RAT Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2
SV=1
Length = 221
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 4 LYIKVLTEGTS---CFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGK 59
L I VL +GTS +T + Q+ F +QY T G DF L+ +T+ N V L +WDIGG+
Sbjct: 13 LKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQ 72
>sp|Q5R7A4|RAB7L_PONAB Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1
Length = 203
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQN-RGVKLILWDIGGK 59
G + RY+QD F++ Y T G DF LK+L + V+L LWDI G+
Sbjct: 19 GKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQ 67
>sp|O14966|RAB7L_HUMAN Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1
Length = 203
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQN-RGVKLILWDIGGK 59
G + RY+QD F++ Y T G DF LK+L + V+L LWDI G+
Sbjct: 19 GKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQ 67
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans
GN=YPT1 PE=3 SV=1
Length = 201
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+++D FT + T G DF ++ + + + +KL +WD G+
Sbjct: 21 GKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 68
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2
SV=1
Length = 205
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 23 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70
>sp|Q54DA7|RAB4_DICDI Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4
PE=3 SV=1
Length = 205
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G SC R+ ++F Q T G DF +++ IQ + VKL +WD G+ S ++ Y
Sbjct: 19 GKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSV-VISYY 77
Query: 72 LSSANIS 78
SA ++
Sbjct: 78 RGSAGVA 84
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1
SV=1
Length = 201
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1
SV=1
Length = 208
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + TR+ D+F Y T G DF K + +++R V+L LWD G+ E L+ +Y
Sbjct: 21 GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSLIPSY 78
Query: 72 LSSANIS 78
+ ++++
Sbjct: 79 IRDSSVA 85
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1
SV=3
Length = 205
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 23 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 23 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 23 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 23 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
>sp|Q8CG50|RAB43_MOUSE Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1
Length = 210
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G +C R+ F+ + T G DF +K L IQ + VKL +WD G+ E + ++Y
Sbjct: 28 GKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRTITQSY 85
Query: 72 LSSAN 76
SAN
Sbjct: 86 YRSAN 90
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
>sp|Q53B90|RAB43_RAT Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2
SV=1
Length = 210
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G +C R+ F+ + T G DF +K L IQ + VKL +WD G+ E + ++Y
Sbjct: 28 GKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRTITQSY 85
Query: 72 LSSAN 76
SAN
Sbjct: 86 YRSAN 90
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 23 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
G SC R+ D +T Y T G DF ++ + + + +KL +WD G+
Sbjct: 20 GKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQ 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,240,824
Number of Sequences: 539616
Number of extensions: 938262
Number of successful extensions: 2185
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 1798
Number of HSP's gapped (non-prelim): 490
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)