Query psy2599
Match_columns 78
No_of_seqs 142 out of 1136
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 20:15:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 7.7E-33 1.7E-37 167.2 5.8 75 2-78 11-85 (205)
2 KOG0094|consensus 100.0 8.4E-31 1.8E-35 158.6 5.8 75 2-78 24-98 (221)
3 KOG0080|consensus 100.0 1.4E-29 3E-34 150.0 6.9 75 2-78 13-87 (209)
4 KOG0092|consensus 100.0 1.1E-29 2.4E-34 153.1 6.2 75 2-78 7-81 (200)
5 KOG0078|consensus 99.9 2.3E-28 5E-33 148.9 5.7 75 2-78 14-88 (207)
6 KOG0394|consensus 99.9 1.5E-28 3.3E-33 147.7 3.7 75 1-77 10-84 (210)
7 KOG0095|consensus 99.9 5.3E-28 1.1E-32 142.2 5.2 74 2-77 9-82 (213)
8 KOG0098|consensus 99.9 1.3E-27 2.8E-32 144.0 5.9 75 2-78 8-82 (216)
9 KOG0079|consensus 99.9 2.8E-27 6.2E-32 138.7 3.7 74 2-77 10-83 (198)
10 KOG0086|consensus 99.9 6.3E-27 1.4E-31 138.0 4.7 75 2-78 11-85 (214)
11 KOG0087|consensus 99.9 1.4E-26 3.1E-31 141.3 5.6 75 2-78 16-90 (222)
12 cd04120 Rab12 Rab12 subfamily. 99.9 1.1E-25 2.4E-30 138.0 7.9 76 1-78 1-76 (202)
13 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 5.6E-25 1.2E-29 132.8 7.2 75 1-78 6-80 (182)
14 cd04133 Rop_like Rop subfamily 99.9 1E-24 2.2E-29 131.2 8.1 75 1-78 2-76 (176)
15 cd01875 RhoG RhoG subfamily. 99.9 7.5E-25 1.6E-29 132.7 7.2 74 2-78 5-78 (191)
16 cd04131 Rnd Rnd subfamily. Th 99.9 8.3E-25 1.8E-29 131.5 7.3 75 1-78 2-76 (178)
17 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.2E-24 4.7E-29 130.0 8.5 75 1-77 1-75 (182)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.5E-24 3.3E-29 135.4 7.2 74 2-78 15-88 (232)
19 KOG0091|consensus 99.9 9.5E-26 2E-30 134.0 1.5 74 2-77 10-84 (213)
20 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.7E-24 5.7E-29 133.5 7.3 75 1-78 2-76 (222)
21 cd04121 Rab40 Rab40 subfamily. 99.9 7.1E-24 1.5E-28 128.8 7.8 75 1-77 7-81 (189)
22 cd01874 Cdc42 Cdc42 subfamily. 99.9 9.7E-24 2.1E-28 126.3 7.7 75 1-78 2-76 (175)
23 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.2E-23 2.5E-28 129.1 7.2 76 1-78 1-81 (202)
24 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.8E-23 3.9E-28 124.6 7.5 75 2-78 2-76 (170)
25 KOG0097|consensus 99.9 4.3E-24 9.3E-29 125.0 4.4 74 3-78 14-87 (215)
26 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 4.5E-23 9.8E-28 125.4 8.0 76 1-78 1-77 (201)
27 KOG0093|consensus 99.9 2.1E-23 4.5E-28 122.3 5.6 74 2-77 23-96 (193)
28 KOG0083|consensus 99.9 7.8E-25 1.7E-29 126.9 -0.8 72 4-77 1-73 (192)
29 PLN00023 GTP-binding protein; 99.9 5.6E-23 1.2E-27 133.2 7.6 76 1-78 22-110 (334)
30 cd04122 Rab14 Rab14 subfamily. 99.9 7.3E-23 1.6E-27 120.8 7.2 75 1-77 3-77 (166)
31 PLN03071 GTP-binding nuclear p 99.9 1.4E-22 3E-27 125.2 8.2 76 1-78 14-89 (219)
32 cd04117 Rab15 Rab15 subfamily. 99.9 2E-22 4.4E-27 118.9 7.9 76 1-78 1-76 (161)
33 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.7E-22 3.8E-27 120.5 7.3 75 1-78 3-77 (172)
34 cd04119 RJL RJL (RabJ-Like) su 99.9 2.4E-22 5.2E-27 117.7 7.4 76 1-78 1-76 (168)
35 cd04136 Rap_like Rap-like subf 99.9 2.8E-22 6.1E-27 117.3 7.6 75 1-78 2-76 (163)
36 cd04134 Rho3 Rho3 subfamily. 99.9 3.1E-22 6.7E-27 120.9 7.8 75 1-78 1-75 (189)
37 cd01871 Rac1_like Rac1-like su 99.9 3.1E-22 6.6E-27 119.7 7.7 75 1-78 2-76 (174)
38 cd04124 RabL2 RabL2 subfamily. 99.9 5.5E-22 1.2E-26 116.9 8.1 76 1-78 1-76 (161)
39 cd01865 Rab3 Rab3 subfamily. 99.9 4E-22 8.7E-27 117.7 7.1 75 1-77 2-76 (165)
40 cd04116 Rab9 Rab9 subfamily. 99.9 3.7E-22 7.9E-27 118.0 6.8 75 1-77 6-80 (170)
41 cd04176 Rap2 Rap2 subgroup. T 99.9 7.6E-22 1.7E-26 115.8 8.1 74 2-78 3-76 (163)
42 smart00176 RAN Ran (Ras-relate 99.9 5.5E-22 1.2E-26 121.4 7.3 71 6-78 1-71 (200)
43 cd01892 Miro2 Miro2 subfamily. 99.9 1E-21 2.2E-26 116.9 8.3 75 2-78 6-81 (169)
44 cd04175 Rap1 Rap1 subgroup. T 99.9 9.2E-22 2E-26 115.7 7.8 74 2-78 3-76 (164)
45 PF00071 Ras: Ras family; Int 99.9 7.4E-22 1.6E-26 115.7 7.4 74 2-77 1-74 (162)
46 cd04106 Rab23_lke Rab23-like s 99.9 5.3E-22 1.2E-26 116.2 6.6 76 1-78 1-78 (162)
47 KOG0393|consensus 99.9 3.3E-23 7.1E-28 126.3 1.5 74 1-77 5-79 (198)
48 cd04109 Rab28 Rab28 subfamily. 99.9 6.4E-22 1.4E-26 121.6 7.1 76 1-78 1-77 (215)
49 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.1E-21 2.4E-26 114.3 7.7 74 1-77 2-75 (162)
50 KOG0081|consensus 99.9 5.3E-24 1.1E-28 126.3 -2.3 74 2-77 11-93 (219)
51 cd04118 Rab24 Rab24 subfamily. 99.9 1.9E-21 4.2E-26 117.2 8.4 76 1-78 1-77 (193)
52 PTZ00369 Ras-like protein; Pro 99.9 1.9E-21 4E-26 117.4 8.0 74 2-78 7-80 (189)
53 cd04144 Ras2 Ras2 subfamily. 99.9 1.5E-21 3.2E-26 117.9 7.3 74 2-78 1-74 (190)
54 cd01867 Rab8_Rab10_Rab13_like 99.9 1.9E-21 4.1E-26 115.0 7.4 76 1-78 4-79 (167)
55 cd04127 Rab27A Rab27a subfamil 99.9 1.2E-21 2.5E-26 116.7 6.3 76 1-78 5-90 (180)
56 cd04110 Rab35 Rab35 subfamily. 99.9 2.8E-21 6.1E-26 117.6 8.0 74 2-77 8-81 (199)
57 KOG0088|consensus 99.9 6.1E-23 1.3E-27 121.7 0.3 75 2-78 15-89 (218)
58 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 3.6E-21 7.7E-26 113.4 7.8 75 1-77 3-77 (166)
59 cd00877 Ran Ran (Ras-related n 99.9 5.7E-21 1.2E-25 113.3 8.7 75 2-78 2-76 (166)
60 cd04132 Rho4_like Rho4-like su 99.9 2.4E-21 5.2E-26 116.2 7.0 75 1-78 1-76 (187)
61 cd04125 RabA_like RabA-like su 99.9 3.9E-21 8.5E-26 115.6 7.6 76 1-78 1-76 (188)
62 cd04115 Rab33B_Rab33A Rab33B/R 99.8 4.3E-21 9.3E-26 113.8 7.1 76 1-78 3-79 (170)
63 PLN03110 Rab GTPase; Provision 99.8 4.1E-21 9E-26 118.3 7.2 74 2-77 14-87 (216)
64 smart00174 RHO Rho (Ras homolo 99.8 8.5E-21 1.8E-25 112.4 8.1 73 3-78 1-73 (174)
65 cd04113 Rab4 Rab4 subfamily. 99.8 7.1E-21 1.5E-25 111.5 7.5 75 1-77 1-75 (161)
66 cd04143 Rhes_like Rhes_like su 99.8 5.3E-21 1.2E-25 120.2 7.4 74 1-77 1-74 (247)
67 cd04111 Rab39 Rab39 subfamily. 99.8 5.6E-21 1.2E-25 117.5 7.2 75 1-77 3-78 (211)
68 COG1100 GTPase SAR1 and relate 99.8 3.2E-21 6.9E-26 117.9 5.6 76 1-78 6-81 (219)
69 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.3E-20 2.9E-25 112.0 7.9 75 1-78 1-75 (173)
70 cd01870 RhoA_like RhoA-like su 99.8 1.6E-20 3.5E-25 111.2 7.5 74 1-77 2-75 (175)
71 cd04177 RSR1 RSR1 subgroup. R 99.8 2.4E-20 5.3E-25 110.3 8.0 75 1-78 2-76 (168)
72 smart00173 RAS Ras subfamily o 99.8 2.2E-20 4.8E-25 109.6 7.7 75 1-78 1-75 (164)
73 cd04140 ARHI_like ARHI subfami 99.8 2.9E-20 6.4E-25 109.7 7.9 75 1-78 2-76 (165)
74 cd01864 Rab19 Rab19 subfamily. 99.8 1.7E-20 3.6E-25 110.5 6.9 74 2-77 5-78 (165)
75 cd04112 Rab26 Rab26 subfamily. 99.8 2.5E-20 5.3E-25 112.7 7.5 76 1-78 1-77 (191)
76 cd01868 Rab11_like Rab11-like. 99.8 3E-20 6.5E-25 109.2 7.4 74 2-77 5-78 (165)
77 cd04145 M_R_Ras_like M-Ras/R-R 99.8 4.1E-20 8.8E-25 108.2 7.9 75 1-78 3-77 (164)
78 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.3E-20 2.8E-25 111.7 5.8 71 2-78 1-71 (164)
79 PLN03108 Rab family protein; P 99.8 3.1E-20 6.7E-25 114.0 7.5 75 2-78 8-82 (210)
80 cd01860 Rab5_related Rab5-rela 99.8 3.7E-20 8E-25 108.4 7.4 76 1-78 2-77 (163)
81 cd01866 Rab2 Rab2 subfamily. 99.8 4.4E-20 9.5E-25 109.3 7.4 76 1-78 5-80 (168)
82 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.5E-20 5.5E-25 109.3 6.3 76 1-78 1-79 (164)
83 cd04135 Tc10 TC10 subfamily. 99.8 6E-20 1.3E-24 108.7 7.9 75 1-78 1-75 (174)
84 cd01862 Rab7 Rab7 subfamily. 99.8 5.7E-20 1.2E-24 108.3 7.7 76 1-78 1-76 (172)
85 PLN03118 Rab family protein; P 99.8 7.1E-20 1.5E-24 112.1 7.9 75 1-78 15-89 (211)
86 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2.4E-20 5.3E-25 109.9 5.6 71 1-78 1-71 (159)
87 PTZ00132 GTP-binding nuclear p 99.8 1E-19 2.2E-24 111.7 8.3 75 1-77 10-84 (215)
88 cd01861 Rab6 Rab6 subfamily. 99.8 8.6E-20 1.9E-24 106.7 7.5 74 2-77 2-75 (161)
89 cd04126 Rab20 Rab20 subfamily. 99.8 9.5E-20 2.1E-24 113.0 7.7 71 1-78 1-71 (220)
90 cd01873 RhoBTB RhoBTB subfamil 99.8 1.1E-19 2.3E-24 110.9 6.3 73 1-77 3-90 (195)
91 smart00175 RAB Rab subfamily o 99.8 2.7E-19 5.8E-24 104.6 7.2 75 1-77 1-75 (164)
92 cd01863 Rab18 Rab18 subfamily. 99.8 5.6E-19 1.2E-23 103.4 8.2 76 1-78 1-76 (161)
93 cd04142 RRP22 RRP22 subfamily. 99.8 5.7E-19 1.2E-23 107.8 8.2 76 1-78 1-84 (198)
94 PLN00223 ADP-ribosylation fact 99.8 8.7E-20 1.9E-24 109.9 4.3 71 1-78 18-88 (181)
95 smart00177 ARF ARF-like small 99.8 2.5E-19 5.5E-24 107.1 5.9 71 1-78 14-84 (175)
96 cd04146 RERG_RasL11_like RERG/ 99.8 7.1E-19 1.5E-23 103.6 7.5 74 2-78 1-75 (165)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 3.3E-19 7.1E-24 107.2 6.1 75 1-78 4-79 (183)
98 KOG4252|consensus 99.8 1.7E-21 3.8E-26 117.5 -4.1 75 2-78 22-96 (246)
99 cd04147 Ras_dva Ras-dva subfam 99.8 9.3E-19 2E-23 106.3 7.4 74 2-78 1-74 (198)
100 cd04123 Rab21 Rab21 subfamily. 99.8 1.5E-18 3.3E-23 101.0 7.6 75 1-77 1-75 (162)
101 cd04149 Arf6 Arf6 subfamily. 99.8 4.3E-19 9.4E-24 105.5 5.2 70 2-78 11-80 (168)
102 PTZ00133 ADP-ribosylation fact 99.8 5.7E-19 1.2E-23 106.3 5.5 70 2-78 19-88 (182)
103 cd00157 Rho Rho (Ras homology) 99.8 3.2E-18 7E-23 100.7 8.5 74 1-77 1-74 (171)
104 cd04103 Centaurin_gamma Centau 99.8 2.9E-18 6.4E-23 101.3 7.7 68 1-77 1-68 (158)
105 cd04114 Rab30 Rab30 subfamily. 99.8 2.8E-18 6.1E-23 101.0 7.5 74 2-77 9-82 (169)
106 cd04158 ARD1 ARD1 subfamily. 99.8 1.7E-18 3.7E-23 102.8 6.0 70 2-78 1-70 (169)
107 cd04161 Arl2l1_Arl13_like Arl2 99.8 2.5E-18 5.3E-23 102.1 6.4 70 2-78 1-70 (167)
108 cd04139 RalA_RalB RalA/RalB su 99.8 4.4E-18 9.5E-23 99.3 7.3 74 2-78 2-75 (164)
109 cd00154 Rab Rab family. Rab G 99.8 3.6E-18 7.7E-23 98.5 6.8 76 1-78 1-76 (159)
110 cd04157 Arl6 Arl6 subfamily. 99.8 1.1E-18 2.3E-23 102.0 4.6 71 2-78 1-72 (162)
111 cd04129 Rho2 Rho2 subfamily. 99.8 8.4E-18 1.8E-22 101.3 8.2 74 1-77 2-75 (187)
112 cd04148 RGK RGK subfamily. Th 99.7 6.7E-18 1.5E-22 104.5 7.8 73 1-77 1-75 (221)
113 KOG0395|consensus 99.7 1.8E-18 3.9E-23 105.8 5.1 73 2-77 5-77 (196)
114 KOG0070|consensus 99.7 7.3E-19 1.6E-23 105.6 2.9 70 1-77 18-87 (181)
115 cd04137 RheB Rheb (Ras Homolog 99.7 8.3E-18 1.8E-22 100.2 6.6 73 2-77 3-75 (180)
116 cd01893 Miro1 Miro1 subfamily. 99.7 1.5E-17 3.2E-22 98.3 7.0 73 1-77 1-73 (166)
117 cd04154 Arl2 Arl2 subfamily. 99.7 1.9E-17 4E-22 98.4 5.7 70 2-78 16-85 (173)
118 KOG0073|consensus 99.7 1.9E-17 4.1E-22 98.4 5.5 70 1-77 17-86 (185)
119 cd00876 Ras Ras family. The R 99.7 4.5E-17 9.8E-22 94.6 7.0 73 2-77 1-73 (160)
120 TIGR00231 small_GTP small GTP- 99.7 7.9E-17 1.7E-21 92.3 7.7 75 1-77 2-76 (161)
121 cd04151 Arl1 Arl1 subfamily. 99.7 1.5E-17 3.3E-22 97.4 4.6 70 2-78 1-70 (158)
122 cd04159 Arl10_like Arl10-like 99.7 5.2E-17 1.1E-21 93.7 6.2 69 3-77 2-70 (159)
123 cd04156 ARLTS1 ARLTS1 subfamil 99.7 6.5E-17 1.4E-21 94.5 6.5 70 2-77 1-70 (160)
124 KOG0071|consensus 99.7 8E-17 1.7E-21 94.1 5.3 70 1-77 18-87 (180)
125 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 8.5E-17 1.9E-21 95.9 5.3 70 2-78 17-86 (174)
126 cd01891 TypA_BipA TypA (tyrosi 99.7 3.7E-17 7.9E-22 99.0 3.5 75 2-78 4-92 (194)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.5E-16 3.3E-21 93.5 6.0 70 2-77 1-76 (167)
128 cd04171 SelB SelB subfamily. 99.7 9.1E-17 2E-21 93.7 4.6 75 1-78 1-78 (164)
129 cd01890 LepA LepA subfamily. 99.7 2.7E-16 5.8E-21 93.4 5.7 75 2-78 2-94 (179)
130 cd00878 Arf_Arl Arf (ADP-ribos 99.6 4.1E-16 8.9E-21 91.0 6.1 69 2-77 1-69 (158)
131 PF00025 Arf: ADP-ribosylation 99.6 1E-16 2.2E-21 96.2 3.1 69 2-77 16-84 (175)
132 PF08477 Miro: Miro-like prote 99.6 7.4E-16 1.6E-20 86.5 6.1 74 2-77 1-76 (119)
133 smart00178 SAR Sar1p-like memb 99.6 6.8E-16 1.5E-20 92.9 5.4 70 2-78 19-88 (184)
134 cd00879 Sar1 Sar1 subfamily. 99.6 8.9E-16 1.9E-20 92.2 5.8 69 2-77 21-89 (190)
135 KOG0075|consensus 99.6 1.8E-16 3.9E-21 93.1 0.2 71 1-77 21-91 (186)
136 KOG4423|consensus 99.6 1.6E-18 3.5E-23 104.9 -8.8 75 2-78 27-102 (229)
137 KOG0096|consensus 99.6 2.3E-15 5.1E-20 91.3 3.9 75 2-78 12-86 (216)
138 cd04105 SR_beta Signal recogni 99.6 3.9E-15 8.5E-20 91.2 4.8 73 2-77 2-75 (203)
139 cd04155 Arl3 Arl3 subfamily. 99.5 1.9E-14 4.1E-19 85.0 6.3 69 2-77 16-84 (173)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 7.7E-15 1.7E-19 86.1 4.4 73 3-77 3-76 (168)
141 KOG1673|consensus 99.5 1.3E-15 2.8E-20 90.4 0.9 73 2-76 22-94 (205)
142 PRK04213 GTP-binding protein; 99.5 1.9E-14 4.1E-19 87.2 4.1 64 2-73 11-85 (201)
143 cd01879 FeoB Ferrous iron tran 99.5 1.3E-13 2.9E-18 80.0 6.9 69 5-77 1-77 (158)
144 PRK00454 engB GTP-binding prot 99.5 1.5E-13 3.2E-18 82.7 5.1 70 1-75 25-104 (196)
145 TIGR02528 EutP ethanolamine ut 99.4 3.7E-14 8E-19 81.6 2.0 60 2-78 2-66 (142)
146 KOG0074|consensus 99.4 3.5E-13 7.6E-18 79.0 5.6 71 1-77 18-88 (185)
147 TIGR01393 lepA GTP-binding pro 99.4 2.7E-13 5.8E-18 94.0 5.9 75 2-78 5-97 (595)
148 PTZ00099 rab6; Provisional 99.4 3.1E-13 6.8E-18 81.3 5.4 55 22-78 2-56 (176)
149 cd00882 Ras_like_GTPase Ras-li 99.4 1.1E-12 2.4E-17 74.0 6.4 70 5-77 1-71 (157)
150 TIGR00487 IF-2 translation ini 99.4 1.3E-12 2.9E-17 90.5 6.4 74 2-78 89-162 (587)
151 TIGR03598 GTPase_YsxC ribosome 99.4 1E-12 2.2E-17 78.7 5.0 55 2-59 20-74 (179)
152 cd01850 CDC_Septin CDC/Septin. 99.4 3.1E-12 6.7E-17 81.8 6.6 60 2-61 6-75 (276)
153 cd04167 Snu114p Snu114p subfam 99.3 2.6E-12 5.7E-17 79.0 5.0 75 2-78 2-98 (213)
154 TIGR00450 mnmE_trmE_thdF tRNA 99.3 9.2E-12 2E-16 84.0 7.8 72 1-77 204-285 (442)
155 cd00881 GTP_translation_factor 99.3 2.6E-12 5.7E-17 76.3 4.7 72 2-77 1-88 (189)
156 cd01897 NOG NOG1 is a nucleola 99.3 7.7E-12 1.7E-16 73.4 6.6 56 2-61 2-59 (168)
157 TIGR00475 selB selenocysteine- 99.3 3.2E-12 6.9E-17 88.5 5.1 74 1-78 1-77 (581)
158 PRK10218 GTP-binding protein; 99.3 6.7E-12 1.4E-16 87.3 6.5 75 2-78 7-95 (607)
159 cd01889 SelB_euk SelB subfamil 99.3 3.5E-12 7.7E-17 77.1 3.5 62 1-62 1-81 (192)
160 PRK03003 GTP-binding protein D 99.3 7.3E-12 1.6E-16 84.9 5.3 58 1-60 212-270 (472)
161 cd01898 Obg Obg subfamily. Th 99.3 1.7E-11 3.8E-16 72.0 6.3 68 2-74 2-75 (170)
162 cd01878 HflX HflX subfamily. 99.3 6E-12 1.3E-16 76.5 4.4 56 2-60 43-100 (204)
163 KOG0072|consensus 99.3 3.9E-13 8.5E-18 79.0 -0.8 70 1-77 19-88 (182)
164 PRK00093 GTP-binding protein D 99.3 1.7E-11 3.7E-16 81.9 6.3 71 2-77 3-83 (435)
165 PRK03003 GTP-binding protein D 99.3 1.6E-11 3.5E-16 83.2 6.1 72 2-77 40-120 (472)
166 cd01876 YihA_EngB The YihA (En 99.3 1.1E-11 2.3E-16 72.0 4.6 54 3-59 2-55 (170)
167 PRK15494 era GTPase Era; Provi 99.2 3.3E-11 7.2E-16 78.9 7.0 59 2-64 54-116 (339)
168 PRK05306 infB translation init 99.2 2.9E-11 6.2E-16 86.1 7.0 72 3-78 293-364 (787)
169 cd04164 trmE TrmE (MnmE, ThdF, 99.2 8E-11 1.7E-15 67.9 7.5 62 1-64 2-64 (157)
170 CHL00189 infB translation init 99.2 1.5E-11 3.2E-16 87.1 5.2 74 3-78 247-322 (742)
171 cd01894 EngA1 EngA1 subfamily. 99.2 4.3E-11 9.3E-16 69.1 5.2 57 4-63 1-59 (157)
172 PRK05291 trmE tRNA modificatio 99.2 1.1E-10 2.4E-15 78.8 7.7 60 2-64 217-278 (449)
173 KOG3883|consensus 99.2 7.6E-11 1.6E-15 70.1 6.0 75 1-77 10-87 (198)
174 TIGR00491 aIF-2 translation in 99.2 4.3E-11 9.3E-16 83.1 4.7 74 3-78 7-96 (590)
175 PRK05433 GTP-binding protein L 99.2 5.4E-11 1.2E-15 82.8 4.9 75 2-78 9-101 (600)
176 cd04168 TetM_like Tet(M)-like 99.1 6.3E-11 1.4E-15 74.3 4.6 75 2-78 1-91 (237)
177 cd01899 Ygr210 Ygr210 subfamil 99.1 9.8E-11 2.1E-15 76.3 5.4 73 3-77 1-102 (318)
178 TIGR03594 GTPase_EngA ribosome 99.1 1.5E-10 3.3E-15 77.2 5.7 71 2-77 1-81 (429)
179 TIGR03156 GTP_HflX GTP-binding 99.1 9.8E-11 2.1E-15 77.1 4.8 55 2-59 191-247 (351)
180 TIGR03594 GTPase_EngA ribosome 99.1 3.2E-10 6.9E-15 75.6 7.1 60 2-64 174-235 (429)
181 cd04104 p47_IIGP_like p47 (47- 99.1 2.9E-10 6.3E-15 69.2 5.8 69 1-71 2-72 (197)
182 KOG0076|consensus 99.1 7E-11 1.5E-15 71.1 2.5 71 1-77 18-95 (197)
183 cd01881 Obg_like The Obg-like 99.1 2.2E-10 4.8E-15 67.4 4.6 52 5-59 1-54 (176)
184 cd01895 EngA2 EngA2 subfamily. 99.1 8.2E-10 1.8E-14 64.4 6.7 60 1-62 3-63 (174)
185 cd01896 DRG The developmentall 99.1 1.1E-09 2.4E-14 68.5 7.5 73 2-77 2-80 (233)
186 cd04169 RF3 RF3 subfamily. Pe 99.1 3.1E-10 6.7E-15 72.3 5.1 75 2-78 4-98 (267)
187 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 6.9E-10 1.5E-14 64.4 5.7 54 2-59 85-138 (141)
188 COG2229 Predicted GTPase [Gene 99.0 2.4E-10 5.2E-15 69.2 3.7 73 1-78 11-95 (187)
189 TIGR00437 feoB ferrous iron tr 99.0 1.1E-09 2.3E-14 76.3 7.4 56 7-64 1-56 (591)
190 TIGR01394 TypA_BipA GTP-bindin 99.0 3.1E-10 6.6E-15 79.0 3.9 75 2-78 3-91 (594)
191 cd04163 Era Era subfamily. Er 99.0 1.2E-09 2.7E-14 63.0 5.9 62 2-64 5-66 (168)
192 cd00880 Era_like Era (E. coli 99.0 1.7E-09 3.7E-14 61.6 6.0 59 5-64 1-60 (163)
193 cd01859 MJ1464 MJ1464. This f 99.0 2E-09 4.4E-14 63.1 6.4 53 2-58 103-155 (156)
194 PRK09518 bifunctional cytidyla 99.0 7.2E-10 1.6E-14 78.4 5.2 57 1-60 451-509 (712)
195 TIGR00490 aEF-2 translation el 99.0 6.1E-10 1.3E-14 78.9 4.8 75 2-78 21-113 (720)
196 PRK09518 bifunctional cytidyla 99.0 8.9E-10 1.9E-14 77.9 5.2 72 2-77 277-357 (712)
197 PRK04004 translation initiatio 99.0 9.2E-10 2E-14 76.6 5.0 74 3-78 9-98 (586)
198 smart00010 small_GTPase Small 99.0 4.4E-10 9.4E-15 62.9 2.6 63 1-64 1-64 (124)
199 TIGR00436 era GTP-binding prot 98.9 2.2E-09 4.7E-14 68.3 5.7 58 2-62 2-61 (270)
200 PRK11058 GTPase HflX; Provisio 98.9 2.6E-09 5.7E-14 72.0 6.1 59 2-61 199-257 (426)
201 cd04170 EF-G_bact Elongation f 98.9 1E-09 2.2E-14 69.6 3.5 71 2-78 1-91 (268)
202 PRK13351 elongation factor G; 98.9 9E-10 1.9E-14 77.5 3.2 71 2-78 10-100 (687)
203 PF01926 MMR_HSR1: 50S ribosom 98.9 1.2E-08 2.7E-13 57.1 6.9 57 2-61 1-59 (116)
204 cd01885 EF2 EF2 (for archaea a 98.9 3.1E-09 6.7E-14 66.2 4.4 73 2-78 2-100 (222)
205 PRK09602 translation-associate 98.9 1.1E-08 2.4E-13 68.4 7.1 75 1-77 2-105 (396)
206 TIGR00483 EF-1_alpha translati 98.9 2.1E-09 4.4E-14 72.2 3.5 74 1-78 8-112 (426)
207 cd01856 YlqF YlqF. Proteins o 98.9 8.6E-09 1.9E-13 61.5 5.6 54 2-59 117-170 (171)
208 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 2.9E-09 6.2E-14 66.9 3.4 72 2-76 1-78 (232)
209 PRK00741 prfC peptide chain re 98.8 3E-09 6.6E-14 73.2 3.8 75 2-78 12-106 (526)
210 PRK09554 feoB ferrous iron tra 98.8 1.8E-08 4E-13 72.0 7.2 61 2-64 5-65 (772)
211 TIGR00503 prfC peptide chain r 98.8 7.3E-09 1.6E-13 71.4 4.7 75 2-78 13-107 (527)
212 PRK15467 ethanolamine utilizat 98.8 2.3E-09 4.9E-14 63.4 1.4 46 2-60 3-48 (158)
213 PRK12317 elongation factor 1-a 98.8 1.1E-08 2.3E-13 68.7 4.8 74 1-78 7-111 (425)
214 cd04166 CysN_ATPS CysN_ATPS su 98.8 7.4E-09 1.6E-13 63.5 3.7 73 2-78 1-104 (208)
215 PRK00093 GTP-binding protein D 98.8 4E-08 8.7E-13 65.8 7.5 61 1-63 174-235 (435)
216 TIGR02729 Obg_CgtA Obg family 98.8 5.5E-08 1.2E-12 63.7 7.6 67 3-73 160-231 (329)
217 PRK10512 selenocysteinyl-tRNA- 98.8 1.4E-08 3E-13 71.1 4.9 74 2-78 2-78 (614)
218 cd01853 Toc34_like Toc34-like 98.7 3.7E-08 7.9E-13 62.4 6.2 59 1-62 32-92 (249)
219 PF00735 Septin: Septin; Inte 98.7 4.9E-08 1.1E-12 62.8 6.4 60 2-61 6-75 (281)
220 PRK00089 era GTPase Era; Revie 98.7 6E-08 1.3E-12 62.0 6.8 57 3-62 8-66 (292)
221 TIGR00991 3a0901s02IAP34 GTP-b 98.7 5.8E-08 1.2E-12 63.3 6.5 59 1-62 39-99 (313)
222 PF02421 FeoB_N: Ferrous iron 98.7 1.2E-07 2.6E-12 56.4 6.4 60 1-62 1-60 (156)
223 cd01886 EF-G Elongation factor 98.6 6.3E-08 1.4E-12 61.9 5.2 75 2-78 1-91 (270)
224 cd01888 eIF2_gamma eIF2-gamma 98.6 4.2E-08 9E-13 60.0 3.7 21 2-22 2-22 (203)
225 KOG1707|consensus 98.6 3.2E-08 6.9E-13 68.5 3.4 72 1-76 10-81 (625)
226 cd01858 NGP_1 NGP-1. Autoanti 98.6 2.7E-07 5.9E-12 54.2 5.9 53 2-58 104-156 (157)
227 TIGR03596 GTPase_YlqF ribosome 98.6 2.7E-07 5.8E-12 59.0 6.2 54 2-59 120-173 (276)
228 PRK12297 obgE GTPase CgtA; Rev 98.5 3.7E-07 8E-12 61.7 6.5 67 3-74 161-233 (424)
229 PRK12296 obgE GTPase CgtA; Rev 98.5 4.1E-07 8.8E-12 62.6 6.8 53 3-59 162-216 (500)
230 PRK12299 obgE GTPase CgtA; Rev 98.5 4.4E-07 9.5E-12 59.7 6.7 66 3-73 161-232 (335)
231 KOG0077|consensus 98.5 4.4E-08 9.6E-13 58.9 1.7 69 2-77 22-90 (193)
232 cd01852 AIG1 AIG1 (avrRpt2-ind 98.5 2.4E-07 5.3E-12 56.2 4.9 58 1-62 1-62 (196)
233 cd01855 YqeH YqeH. YqeH is an 98.5 3.7E-07 8E-12 55.1 5.7 54 2-58 129-189 (190)
234 cd01883 EF1_alpha Eukaryotic e 98.5 1.4E-07 3E-12 58.4 3.7 74 2-77 1-103 (219)
235 COG3596 Predicted GTPase [Gene 98.5 6.7E-08 1.4E-12 62.0 2.3 59 1-61 40-99 (296)
236 cd04178 Nucleostemin_like Nucl 98.5 5.2E-07 1.1E-11 54.3 6.0 52 2-58 119-171 (172)
237 PRK09563 rbgA GTPase YlqF; Rev 98.5 6.5E-07 1.4E-11 57.6 6.7 55 2-60 123-177 (287)
238 PF09439 SRPRB: Signal recogni 98.5 2.3E-08 5.1E-13 60.7 0.0 58 3-64 6-64 (181)
239 TIGR00485 EF-Tu translation el 98.5 1.3E-07 2.7E-12 63.1 3.3 62 1-64 13-90 (394)
240 COG0486 ThdF Predicted GTPase 98.4 1E-06 2.2E-11 59.8 7.0 61 1-64 218-280 (454)
241 TIGR00484 EF-G translation elo 98.4 3.5E-07 7.5E-12 64.8 4.9 73 2-78 12-102 (689)
242 TIGR03680 eif2g_arch translati 98.4 7.9E-08 1.7E-12 64.4 1.3 75 2-78 6-107 (406)
243 PLN03126 Elongation factor Tu; 98.4 3E-07 6.5E-12 62.9 3.8 74 2-77 83-170 (478)
244 PF04548 AIG1: AIG1 family; I 98.4 3.2E-07 7E-12 56.6 3.7 55 1-59 1-59 (212)
245 PF00009 GTP_EFTU: Elongation 98.4 5.4E-08 1.2E-12 58.7 -0.2 73 2-78 5-97 (188)
246 PRK12735 elongation factor Tu; 98.4 3.7E-07 8.1E-12 61.0 3.7 63 2-64 14-90 (396)
247 cd01884 EF_Tu EF-Tu subfamily. 98.4 4.4E-07 9.5E-12 55.5 3.5 75 1-77 3-91 (195)
248 TIGR02034 CysN sulfate adenyly 98.3 4.7E-07 1E-11 60.7 3.5 21 1-21 1-21 (406)
249 cd04165 GTPBP1_like GTPBP1-lik 98.3 1.6E-06 3.4E-11 54.1 5.6 26 2-27 1-26 (224)
250 PRK12736 elongation factor Tu; 98.3 5.3E-07 1.1E-11 60.3 3.4 64 1-64 13-90 (394)
251 PRK04000 translation initiatio 98.3 2.4E-07 5.3E-12 62.2 1.7 22 1-22 10-31 (411)
252 COG1161 Predicted GTPases [Gen 98.3 2.1E-06 4.5E-11 56.2 5.5 53 2-59 134-187 (322)
253 PTZ00258 GTP-binding protein; 98.3 2.9E-06 6.2E-11 56.9 5.7 59 1-60 22-96 (390)
254 PF03193 DUF258: Protein of un 98.2 2E-06 4.4E-11 51.5 3.7 22 3-24 38-59 (161)
255 COG5019 CDC3 Septin family pro 98.2 5.5E-06 1.2E-10 55.0 5.9 61 2-62 25-95 (373)
256 PRK12288 GTPase RsgA; Reviewed 98.2 3.5E-06 7.6E-11 55.7 4.7 59 3-64 208-272 (347)
257 PRK09601 GTP-binding protein Y 98.2 8.7E-06 1.9E-10 54.2 6.4 60 1-61 3-78 (364)
258 PRK12289 GTPase RsgA; Reviewed 98.1 6.5E-06 1.4E-10 54.6 5.6 58 3-63 175-238 (352)
259 KOG1191|consensus 98.1 4.1E-06 8.8E-11 57.4 4.7 58 2-61 270-328 (531)
260 cd01900 YchF YchF subfamily. 98.1 7.1E-06 1.5E-10 52.8 5.5 58 3-60 1-73 (274)
261 COG0218 Predicted GTPase [Gene 98.1 1.1E-05 2.3E-10 49.8 5.9 53 3-58 27-79 (200)
262 PRK12298 obgE GTPase CgtA; Rev 98.1 1.1E-05 2.3E-10 54.2 6.4 56 3-61 162-219 (390)
263 PRK05124 cysN sulfate adenylyl 98.1 3.9E-06 8.6E-11 57.4 4.4 22 1-22 28-49 (474)
264 CHL00071 tufA elongation facto 98.1 3.6E-06 7.8E-11 56.5 4.1 73 1-77 13-101 (409)
265 cd01854 YjeQ_engC YjeQ/EngC. 98.1 3.9E-06 8.4E-11 54.1 4.0 58 3-63 164-227 (287)
266 PRK12740 elongation factor G; 98.1 2.3E-06 4.9E-11 60.4 3.0 69 6-78 1-87 (668)
267 PF10662 PduV-EutP: Ethanolami 98.1 5.6E-06 1.2E-10 48.7 3.9 39 2-42 3-41 (143)
268 TIGR00157 ribosome small subun 98.1 1.1E-05 2.4E-10 50.9 5.5 53 3-63 123-185 (245)
269 PF05049 IIGP: Interferon-indu 98.1 2.1E-06 4.6E-11 57.3 2.2 69 2-73 37-108 (376)
270 cd01849 YlqF_related_GTPase Yl 98.1 2E-05 4.2E-10 46.3 6.1 52 2-58 102-154 (155)
271 PLN00043 elongation factor 1-a 98.1 3.3E-06 7.2E-11 57.4 2.9 76 1-78 8-112 (447)
272 KOG2655|consensus 98.0 1.8E-05 3.9E-10 52.7 6.1 60 2-61 23-91 (366)
273 PRK00049 elongation factor Tu; 98.0 4.8E-06 1E-10 55.8 3.4 73 1-77 13-101 (396)
274 PRK12739 elongation factor G; 98.0 3.4E-06 7.3E-11 59.9 2.7 73 2-78 10-100 (691)
275 TIGR00993 3a0901s04IAP86 chlor 98.0 2.7E-05 5.9E-10 55.5 7.0 58 2-62 120-179 (763)
276 PRK05506 bifunctional sulfate 98.0 5.9E-06 1.3E-10 58.1 3.3 22 1-22 25-46 (632)
277 COG1084 Predicted GTPase [Gene 98.0 2.7E-05 5.9E-10 51.2 5.9 51 3-59 171-225 (346)
278 PLN03127 Elongation factor Tu; 98.0 1.8E-05 3.9E-10 53.9 5.0 62 1-64 62-139 (447)
279 PTZ00141 elongation factor 1- 98.0 1.1E-05 2.4E-10 54.9 3.9 76 1-78 8-112 (446)
280 KOG0090|consensus 97.9 3.8E-06 8.3E-11 52.4 1.5 65 2-73 40-104 (238)
281 PRK07261 topology modulation p 97.9 7.5E-06 1.6E-10 49.1 2.7 22 1-22 1-22 (171)
282 COG0563 Adk Adenylate kinase a 97.9 8.3E-06 1.8E-10 49.4 2.7 23 1-23 1-23 (178)
283 COG1160 Predicted GTPases [Gen 97.9 3.3E-05 7.2E-10 52.5 5.4 60 1-62 179-239 (444)
284 PRK00098 GTPase RsgA; Reviewed 97.9 4E-05 8.6E-10 49.7 5.6 22 3-24 167-188 (298)
285 TIGR03597 GTPase_YqeH ribosome 97.9 5.7E-05 1.2E-09 50.2 6.2 58 2-62 156-217 (360)
286 PRK08118 topology modulation p 97.9 1.1E-05 2.3E-10 48.3 2.6 23 1-23 2-24 (167)
287 PRK13796 GTPase YqeH; Provisio 97.9 3.6E-05 7.7E-10 51.2 5.1 56 2-60 162-221 (365)
288 cd01851 GBP Guanylate-binding 97.9 4.3E-05 9.4E-10 47.7 5.2 59 3-62 10-73 (224)
289 COG1162 Predicted GTPases [Gen 97.9 1.5E-05 3.3E-10 51.8 3.2 20 3-22 167-186 (301)
290 COG1618 Predicted nucleotide k 97.9 3.9E-05 8.4E-10 46.2 4.6 54 1-57 6-59 (179)
291 PF05783 DLIC: Dynein light in 97.9 3.8E-05 8.2E-10 52.8 5.1 60 2-64 27-88 (472)
292 KOG1423|consensus 97.8 6.9E-05 1.5E-09 49.3 5.2 55 2-60 74-131 (379)
293 PRK06217 hypothetical protein; 97.8 2E-05 4.3E-10 47.5 2.5 23 1-23 2-24 (183)
294 COG1160 Predicted GTPases [Gen 97.8 7.9E-05 1.7E-09 50.7 5.4 57 3-62 6-64 (444)
295 KOG1547|consensus 97.7 7.8E-05 1.7E-09 47.8 4.9 60 2-61 48-116 (336)
296 PF03266 NTPase_1: NTPase; In 97.7 1.6E-05 3.5E-10 47.7 1.7 52 2-56 1-52 (168)
297 KOG3886|consensus 97.7 6.8E-06 1.5E-10 52.1 -0.1 59 2-62 6-66 (295)
298 COG1163 DRG Predicted GTPase [ 97.7 8.2E-05 1.8E-09 49.1 4.8 54 2-58 65-119 (365)
299 PLN00116 translation elongatio 97.7 3.4E-05 7.4E-10 56.0 3.4 75 2-78 21-125 (843)
300 PF13207 AAA_17: AAA domain; P 97.7 3.3E-05 7.2E-10 43.1 2.7 21 3-23 2-22 (121)
301 COG0370 FeoB Fe2+ transport sy 97.7 0.00017 3.6E-09 51.2 6.5 58 2-61 5-62 (653)
302 PTZ00416 elongation factor 2; 97.7 5.1E-05 1.1E-09 55.1 4.1 75 2-78 21-119 (836)
303 PRK03839 putative kinase; Prov 97.7 3.2E-05 7E-10 46.3 2.6 23 1-23 1-23 (180)
304 KOG3859|consensus 97.7 8.3E-05 1.8E-09 48.6 4.5 58 2-59 44-105 (406)
305 COG1159 Era GTPase [General fu 97.7 0.00013 2.8E-09 47.5 5.3 57 3-62 9-67 (298)
306 PRK07560 elongation factor EF- 97.7 3.6E-05 7.8E-10 55.1 3.0 74 3-78 23-114 (731)
307 PRK00007 elongation factor G; 97.7 4.6E-05 9.9E-10 54.3 3.3 72 2-77 12-101 (693)
308 PRK14532 adenylate kinase; Pro 97.6 4.8E-05 1E-09 45.8 2.6 22 1-22 1-22 (188)
309 PF13671 AAA_33: AAA domain; P 97.6 5.3E-05 1.2E-09 43.4 2.6 19 3-21 2-20 (143)
310 PRK13695 putative NTPase; Prov 97.6 5.9E-05 1.3E-09 45.0 2.7 22 1-22 1-22 (174)
311 PF00004 AAA: ATPase family as 97.6 7.6E-05 1.7E-09 41.9 2.7 21 3-23 1-21 (132)
312 PF07728 AAA_5: AAA domain (dy 97.5 8.3E-05 1.8E-09 42.6 2.6 20 3-22 2-21 (139)
313 PF13191 AAA_16: AAA ATPase do 97.5 7.8E-05 1.7E-09 44.1 2.5 20 3-22 27-46 (185)
314 cd00066 G-alpha G protein alph 97.5 0.00056 1.2E-08 44.8 6.1 29 47-77 159-187 (317)
315 PTZ00088 adenylate kinase 1; P 97.5 0.00011 2.3E-09 46.2 2.6 23 1-23 7-29 (229)
316 PF00350 Dynamin_N: Dynamin fa 97.5 0.0004 8.8E-09 40.7 5.0 32 3-34 1-33 (168)
317 PF05729 NACHT: NACHT domain 97.5 0.00011 2.4E-09 42.6 2.5 21 3-23 3-23 (166)
318 KOG0705|consensus 97.5 7.7E-05 1.7E-09 52.3 2.1 57 1-59 31-87 (749)
319 PF13401 AAA_22: AAA domain; P 97.4 0.00012 2.6E-09 41.2 2.6 21 3-23 7-27 (131)
320 PRK00625 shikimate kinase; Pro 97.4 0.00013 2.8E-09 44.0 2.7 23 1-23 1-23 (173)
321 smart00275 G_alpha G protein a 97.4 0.00054 1.2E-08 45.3 5.8 43 29-77 168-210 (342)
322 COG3839 MalK ABC-type sugar tr 97.4 0.00015 3.3E-09 48.0 3.2 22 3-24 32-53 (338)
323 PRK00279 adk adenylate kinase; 97.4 0.00013 2.7E-09 45.0 2.7 22 1-22 1-22 (215)
324 PRK10078 ribose 1,5-bisphospho 97.4 0.00013 2.9E-09 44.0 2.6 21 3-23 5-25 (186)
325 smart00382 AAA ATPases associa 97.4 0.0002 4.4E-09 39.6 3.1 24 3-26 5-28 (148)
326 TIGR02322 phosphon_PhnN phosph 97.4 0.00015 3.2E-09 43.3 2.7 21 3-23 4-24 (179)
327 PRK02496 adk adenylate kinase; 97.4 0.00014 3E-09 43.7 2.4 22 1-22 2-23 (184)
328 PF13173 AAA_14: AAA domain 97.4 0.00015 3.4E-09 41.3 2.4 23 3-25 5-27 (128)
329 PRK14738 gmk guanylate kinase; 97.4 0.00019 4.2E-09 44.1 2.9 21 3-23 16-36 (206)
330 cd00071 GMPK Guanosine monopho 97.4 0.00018 3.9E-09 41.7 2.7 21 3-23 2-22 (137)
331 PRK14737 gmk guanylate kinase; 97.3 0.00019 4.1E-09 43.7 2.7 21 3-23 7-27 (186)
332 COG1126 GlnQ ABC-type polar am 97.3 0.00025 5.4E-09 44.6 3.2 22 3-24 31-52 (240)
333 TIGR00092 GTP-binding protein 97.3 0.00077 1.7E-08 45.2 5.7 59 1-61 3-79 (368)
334 PF01637 Arch_ATPase: Archaeal 97.3 0.00019 4.1E-09 43.6 2.7 22 3-24 23-44 (234)
335 cd00009 AAA The AAA+ (ATPases 97.3 0.0002 4.4E-09 40.1 2.6 22 3-24 22-43 (151)
336 TIGR03263 guanyl_kin guanylate 97.3 0.00019 4.1E-09 42.7 2.6 21 3-23 4-24 (180)
337 PF13238 AAA_18: AAA domain; P 97.3 0.00022 4.7E-09 39.8 2.7 21 3-23 1-21 (129)
338 PRK14529 adenylate kinase; Pro 97.3 0.0002 4.4E-09 44.9 2.6 22 1-22 1-22 (223)
339 PRK14526 adenylate kinase; Pro 97.3 0.00021 4.7E-09 44.3 2.7 22 1-22 1-22 (211)
340 COG1116 TauB ABC-type nitrate/ 97.3 0.00029 6.2E-09 44.8 3.2 22 3-24 32-53 (248)
341 PF13521 AAA_28: AAA domain; P 97.3 0.00018 3.8E-09 42.4 2.1 22 2-23 1-22 (163)
342 PRK14530 adenylate kinase; Pro 97.3 0.00024 5.3E-09 43.7 2.7 21 2-22 5-25 (215)
343 COG4525 TauB ABC-type taurine 97.3 0.00025 5.4E-09 44.4 2.6 21 3-23 34-54 (259)
344 TIGR02836 spore_IV_A stage IV 97.3 0.00085 1.8E-08 46.0 5.3 57 3-59 20-101 (492)
345 PRK14531 adenylate kinase; Pro 97.3 0.00025 5.4E-09 42.7 2.6 22 1-22 3-24 (183)
346 TIGR01313 therm_gnt_kin carboh 97.2 0.00031 6.7E-09 41.3 2.8 21 3-23 1-21 (163)
347 cd02019 NK Nucleoside/nucleoti 97.2 0.00034 7.5E-09 36.0 2.7 21 3-23 2-22 (69)
348 PRK13949 shikimate kinase; Pro 97.2 0.00029 6.2E-09 42.2 2.6 21 2-22 3-23 (169)
349 PF00005 ABC_tran: ABC transpo 97.2 0.00028 6E-09 40.2 2.5 21 3-23 14-34 (137)
350 PRK00300 gmk guanylate kinase; 97.2 0.0003 6.5E-09 42.8 2.6 21 3-23 8-28 (205)
351 KOG3905|consensus 97.2 0.00059 1.3E-08 45.5 4.0 56 2-60 54-111 (473)
352 PRK05057 aroK shikimate kinase 97.2 0.00036 7.8E-09 41.8 2.6 22 2-23 6-27 (172)
353 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00036 7.7E-09 41.6 2.6 19 3-21 6-24 (188)
354 cd01428 ADK Adenylate kinase ( 97.2 0.0004 8.8E-09 41.6 2.8 22 2-23 1-22 (194)
355 COG1936 Predicted nucleotide k 97.2 0.00038 8.3E-09 42.3 2.6 21 1-21 1-21 (180)
356 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00038 8.3E-09 39.1 2.4 19 3-21 18-36 (107)
357 TIGR03015 pepcterm_ATPase puta 97.1 0.00039 8.4E-09 43.7 2.7 21 3-23 46-66 (269)
358 COG1136 SalX ABC-type antimicr 97.1 0.00037 8.1E-09 43.8 2.5 21 3-23 34-54 (226)
359 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0016 3.6E-08 37.9 5.0 21 3-23 25-45 (133)
360 COG5256 TEF1 Translation elong 97.1 0.00042 9E-09 47.0 2.8 64 1-64 8-100 (428)
361 COG1117 PstB ABC-type phosphat 97.1 0.00038 8.3E-09 43.9 2.4 18 4-21 37-54 (253)
362 PF13555 AAA_29: P-loop contai 97.1 0.00057 1.2E-08 34.8 2.7 19 3-21 26-44 (62)
363 PF03205 MobB: Molybdopterin g 97.1 0.00047 1E-08 40.3 2.7 21 2-22 2-22 (140)
364 PF12775 AAA_7: P-loop contain 97.1 0.00055 1.2E-08 44.0 3.2 23 2-24 35-57 (272)
365 COG3842 PotA ABC-type spermidi 97.1 0.00056 1.2E-08 45.5 3.2 23 3-25 34-56 (352)
366 smart00072 GuKc Guanylate kina 97.1 0.0005 1.1E-08 41.5 2.7 21 3-23 5-25 (184)
367 cd02023 UMPK Uridine monophosp 97.1 0.00049 1.1E-08 41.7 2.7 21 3-23 2-22 (198)
368 cd03238 ABC_UvrA The excision 97.1 0.00039 8.5E-09 42.0 2.2 19 3-21 24-42 (176)
369 PRK06762 hypothetical protein; 97.1 0.00058 1.3E-08 40.2 2.9 21 3-23 5-25 (166)
370 PF00625 Guanylate_kin: Guanyl 97.1 0.00052 1.1E-08 41.3 2.7 20 3-22 5-24 (183)
371 COG0194 Gmk Guanylate kinase [ 97.1 0.00051 1.1E-08 42.1 2.6 22 3-24 7-28 (191)
372 PRK04182 cytidylate kinase; Pr 97.1 0.00053 1.2E-08 40.5 2.7 22 1-22 1-22 (180)
373 PRK04040 adenylate kinase; Pro 97.1 0.00047 1E-08 42.0 2.4 22 2-23 4-25 (188)
374 TIGR01351 adk adenylate kinase 97.0 0.0006 1.3E-08 41.9 2.8 21 2-22 1-21 (210)
375 PRK14528 adenylate kinase; Pro 97.0 0.00057 1.2E-08 41.4 2.6 22 1-22 2-23 (186)
376 cd00464 SK Shikimate kinase (S 97.0 0.00067 1.5E-08 39.2 2.8 21 2-22 1-21 (154)
377 PRK13808 adenylate kinase; Pro 97.0 0.00056 1.2E-08 45.3 2.7 22 1-22 1-22 (333)
378 PRK00131 aroK shikimate kinase 97.0 0.00064 1.4E-08 39.9 2.7 21 2-22 6-26 (175)
379 KOG1491|consensus 97.0 0.0025 5.4E-08 42.6 5.6 60 2-61 22-96 (391)
380 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00064 1.4E-08 40.6 2.7 20 3-22 2-21 (183)
381 PRK08233 hypothetical protein; 97.0 0.00065 1.4E-08 40.3 2.7 20 3-22 6-25 (182)
382 PF00910 RNA_helicase: RNA hel 97.0 0.00077 1.7E-08 37.4 2.8 20 3-22 1-20 (107)
383 PRK13947 shikimate kinase; Pro 97.0 0.00068 1.5E-08 40.0 2.7 21 2-22 3-23 (171)
384 PRK05800 cobU adenosylcobinami 97.0 0.00064 1.4E-08 40.9 2.6 23 1-23 2-24 (170)
385 KOG1424|consensus 97.0 0.0012 2.5E-08 46.0 4.0 53 3-59 317-369 (562)
386 cd01882 BMS1 Bms1. Bms1 is an 97.0 0.0024 5.1E-08 39.8 5.1 52 3-59 42-93 (225)
387 cd01120 RecA-like_NTPases RecA 97.0 0.00073 1.6E-08 38.8 2.6 21 3-23 2-22 (165)
388 TIGR00235 udk uridine kinase. 97.0 0.00071 1.5E-08 41.5 2.6 20 3-22 9-28 (207)
389 PHA00729 NTP-binding motif con 97.0 0.00067 1.4E-08 42.7 2.5 22 2-23 19-40 (226)
390 cd02021 GntK Gluconate kinase 97.0 0.00078 1.7E-08 39.0 2.7 21 3-23 2-22 (150)
391 COG1120 FepC ABC-type cobalami 97.0 0.00069 1.5E-08 43.4 2.5 20 3-22 31-50 (258)
392 PRK06547 hypothetical protein; 97.0 0.00066 1.4E-08 40.9 2.3 21 3-23 18-38 (172)
393 cd01124 KaiC KaiC is a circadi 96.9 0.0008 1.7E-08 40.1 2.6 21 3-23 2-22 (187)
394 COG3638 ABC-type phosphate/pho 96.9 0.00071 1.5E-08 43.1 2.4 20 3-22 33-52 (258)
395 PRK15177 Vi polysaccharide exp 96.9 0.0011 2.4E-08 40.9 3.2 21 3-23 16-36 (213)
396 cd03269 ABC_putative_ATPase Th 96.9 0.0012 2.5E-08 40.4 3.3 21 3-23 29-49 (210)
397 cd01128 rho_factor Transcripti 96.9 0.00078 1.7E-08 42.9 2.5 23 2-24 18-40 (249)
398 cd03226 ABC_cobalt_CbiO_domain 96.9 0.0012 2.5E-08 40.3 3.2 21 3-23 29-49 (205)
399 cd00227 CPT Chloramphenicol (C 96.9 0.0009 2E-08 40.0 2.6 21 3-23 5-25 (175)
400 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.0012 2.5E-08 40.5 3.2 21 3-23 33-53 (218)
401 PF05621 TniB: Bacterial TniB 96.9 0.001 2.2E-08 43.5 3.0 22 3-24 64-85 (302)
402 TIGR02315 ABC_phnC phosphonate 96.9 0.0012 2.5E-08 41.2 3.2 21 3-23 31-51 (243)
403 KOG3347|consensus 96.9 0.00089 1.9E-08 40.1 2.5 22 1-22 8-29 (176)
404 PRK08356 hypothetical protein; 96.9 0.001 2.2E-08 40.5 2.8 22 1-22 6-27 (195)
405 TIGR00960 3a0501s02 Type II (G 96.9 0.0013 2.7E-08 40.4 3.2 21 3-23 32-52 (216)
406 KOG3887|consensus 96.9 0.00025 5.3E-09 45.6 0.1 57 2-62 29-88 (347)
407 PRK14845 translation initiatio 96.9 0.0011 2.4E-08 49.5 3.3 62 11-78 472-553 (1049)
408 PRK05480 uridine/cytidine kina 96.9 0.00098 2.1E-08 40.8 2.7 20 3-22 9-28 (209)
409 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0012 2.7E-08 39.9 3.1 21 3-23 28-48 (177)
410 smart00053 DYNc Dynamin, GTPas 96.9 0.0011 2.4E-08 42.0 2.9 23 2-24 28-50 (240)
411 PF00448 SRP54: SRP54-type pro 96.9 0.001 2.2E-08 40.9 2.6 19 3-21 4-22 (196)
412 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.001 2.2E-08 40.9 2.6 21 3-23 41-61 (226)
413 cd03257 ABC_NikE_OppD_transpor 96.9 0.0013 2.9E-08 40.4 3.2 21 3-23 34-54 (228)
414 cd03225 ABC_cobalt_CbiO_domain 96.9 0.0014 3E-08 40.0 3.3 21 3-23 30-50 (211)
415 TIGR00101 ureG urease accessor 96.9 0.0009 1.9E-08 41.1 2.4 22 2-23 3-24 (199)
416 cd03264 ABC_drug_resistance_li 96.9 0.0014 3.1E-08 40.0 3.3 21 3-23 28-48 (211)
417 cd03224 ABC_TM1139_LivF_branch 96.9 0.0014 3E-08 40.3 3.2 21 3-23 29-49 (222)
418 TIGR01166 cbiO cobalt transpor 96.8 0.0015 3.2E-08 39.4 3.2 21 3-23 21-41 (190)
419 TIGR02211 LolD_lipo_ex lipopro 96.8 0.0015 3.2E-08 40.2 3.3 21 3-23 34-54 (221)
420 cd03216 ABC_Carb_Monos_I This 96.8 0.0016 3.4E-08 38.6 3.3 21 3-23 29-49 (163)
421 TIGR03608 L_ocin_972_ABC putat 96.8 0.0015 3.2E-08 39.7 3.3 21 3-23 27-47 (206)
422 PLN02459 probable adenylate ki 96.8 0.001 2.2E-08 42.7 2.6 22 1-22 30-51 (261)
423 cd03261 ABC_Org_Solvent_Resist 96.8 0.0014 3.1E-08 40.7 3.2 21 3-23 29-49 (235)
424 PF03029 ATP_bind_1: Conserved 96.8 0.00093 2E-08 42.2 2.4 18 5-22 1-18 (238)
425 COG0703 AroK Shikimate kinase 96.8 0.0012 2.5E-08 40.1 2.7 22 1-22 3-24 (172)
426 cd03266 ABC_NatA_sodium_export 96.8 0.0015 3.2E-08 40.1 3.2 21 3-23 34-54 (218)
427 cd03256 ABC_PhnC_transporter A 96.8 0.0015 3.2E-08 40.6 3.2 21 3-23 30-50 (241)
428 cd03262 ABC_HisP_GlnQ_permease 96.8 0.0016 3.4E-08 39.8 3.3 21 3-23 29-49 (213)
429 COG4619 ABC-type uncharacteriz 96.8 0.0015 3.3E-08 40.1 3.1 21 3-23 32-52 (223)
430 cd03293 ABC_NrtD_SsuB_transpor 96.8 0.0016 3.4E-08 40.1 3.3 21 3-23 33-53 (220)
431 TIGR02673 FtsE cell division A 96.8 0.0016 3.4E-08 39.9 3.3 21 3-23 31-51 (214)
432 cd03292 ABC_FtsE_transporter F 96.8 0.0016 3.5E-08 39.8 3.3 21 3-23 30-50 (214)
433 cd03235 ABC_Metallic_Cations A 96.8 0.0015 3.2E-08 40.0 3.1 21 3-23 28-48 (213)
434 cd03301 ABC_MalK_N The N-termi 96.8 0.0017 3.6E-08 39.7 3.3 21 3-23 29-49 (213)
435 PRK10751 molybdopterin-guanine 96.8 0.0011 2.4E-08 40.1 2.4 20 3-22 9-28 (173)
436 cd03268 ABC_BcrA_bacitracin_re 96.8 0.0017 3.6E-08 39.6 3.2 21 3-23 29-49 (208)
437 cd01918 HprK_C HprK/P, the bif 96.8 0.0013 2.8E-08 39.0 2.6 21 3-23 17-37 (149)
438 PRK13540 cytochrome c biogenes 96.8 0.0017 3.8E-08 39.4 3.3 22 3-24 30-51 (200)
439 PRK05541 adenylylsulfate kinas 96.8 0.0013 2.8E-08 39.2 2.6 20 3-22 10-29 (176)
440 cd01672 TMPK Thymidine monopho 96.8 0.0013 2.8E-08 39.3 2.6 21 2-22 2-22 (200)
441 PF06745 KaiC: KaiC; InterPro 96.8 0.0012 2.7E-08 40.7 2.6 20 3-22 22-41 (226)
442 PRK13541 cytochrome c biogenes 96.8 0.0018 3.8E-08 39.3 3.3 22 3-24 29-50 (195)
443 cd03263 ABC_subfamily_A The AB 96.8 0.0017 3.7E-08 39.8 3.3 21 3-23 31-51 (220)
444 PLN02674 adenylate kinase 96.8 0.0013 2.7E-08 41.9 2.7 22 1-22 32-53 (244)
445 cd03265 ABC_DrrA DrrA is the A 96.8 0.0018 3.8E-08 39.9 3.3 21 3-23 29-49 (220)
446 PF04665 Pox_A32: Poxvirus A32 96.8 0.0012 2.7E-08 41.9 2.6 21 2-22 15-35 (241)
447 TIGR02173 cyt_kin_arch cytidyl 96.8 0.0014 3E-08 38.5 2.7 22 1-22 1-22 (171)
448 cd03259 ABC_Carb_Solutes_like 96.8 0.0018 3.8E-08 39.7 3.2 21 3-23 29-49 (213)
449 KOG1707|consensus 96.8 0.0055 1.2E-07 43.3 5.9 55 3-57 428-482 (625)
450 PRK11629 lolD lipoprotein tran 96.8 0.0018 3.9E-08 40.2 3.3 21 3-23 38-58 (233)
451 cd03237 ABC_RNaseL_inhibitor_d 96.8 0.0017 3.8E-08 41.0 3.2 22 3-24 28-49 (246)
452 cd03297 ABC_ModC_molybdenum_tr 96.8 0.0019 4E-08 39.6 3.3 21 3-23 26-46 (214)
453 PRK11248 tauB taurine transpor 96.8 0.0018 4E-08 40.9 3.3 21 3-23 30-50 (255)
454 cd01131 PilT Pilus retraction 96.8 0.0014 3E-08 40.1 2.7 21 3-23 4-24 (198)
455 cd03218 ABC_YhbG The ABC trans 96.8 0.0019 4E-08 40.0 3.3 21 3-23 29-49 (232)
456 cd03258 ABC_MetN_methionine_tr 96.8 0.0019 4.1E-08 40.1 3.3 21 3-23 34-54 (233)
457 TIGR03797 NHPM_micro_ABC2 NHPM 96.7 0.003 6.5E-08 44.9 4.6 28 2-34 481-508 (686)
458 PRK10908 cell division protein 96.7 0.002 4.3E-08 39.7 3.3 21 3-23 31-51 (222)
459 PRK10584 putative ABC transpor 96.7 0.002 4.3E-08 39.8 3.3 21 3-23 39-59 (228)
460 PRK11124 artP arginine transpo 96.7 0.002 4.2E-08 40.2 3.3 21 3-23 31-51 (242)
461 COG1119 ModF ABC-type molybden 96.7 0.0018 3.9E-08 41.4 3.1 24 3-26 60-83 (257)
462 PRK10247 putative ABC transpor 96.7 0.002 4.3E-08 39.9 3.2 21 3-23 36-56 (225)
463 TIGR00073 hypB hydrogenase acc 96.7 0.0015 3.2E-08 40.1 2.7 21 3-23 25-45 (207)
464 TIGR03864 PQQ_ABC_ATP ABC tran 96.7 0.002 4.3E-08 40.1 3.2 21 3-23 30-50 (236)
465 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.002 4.3E-08 37.5 3.1 21 3-23 29-49 (144)
466 cd03246 ABCC_Protease_Secretio 96.7 0.0022 4.7E-08 38.2 3.3 21 3-23 31-51 (173)
467 TIGR01189 ccmA heme ABC export 96.7 0.0021 4.6E-08 39.0 3.3 21 3-23 29-49 (198)
468 cd03260 ABC_PstB_phosphate_tra 96.7 0.0015 3.3E-08 40.3 2.6 22 3-24 29-50 (227)
469 cd03215 ABC_Carb_Monos_II This 96.7 0.0021 4.6E-08 38.6 3.2 22 3-24 29-50 (182)
470 cd03296 ABC_CysA_sulfate_impor 96.7 0.002 4.4E-08 40.2 3.2 21 3-23 31-51 (239)
471 TIGR02881 spore_V_K stage V sp 96.7 0.0015 3.2E-08 41.5 2.6 21 2-22 44-64 (261)
472 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0022 4.9E-08 38.2 3.3 21 3-23 29-49 (173)
473 cd03219 ABC_Mj1267_LivG_branch 96.7 0.0019 4.2E-08 40.0 3.1 21 3-23 29-49 (236)
474 PF13479 AAA_24: AAA domain 96.7 0.00094 2E-08 41.3 1.7 19 2-20 5-23 (213)
475 TIGR00635 ruvB Holliday juncti 96.7 0.0015 3.2E-08 42.0 2.7 21 3-23 33-53 (305)
476 PRK11247 ssuB aliphatic sulfon 96.7 0.0021 4.5E-08 40.9 3.3 21 3-23 41-61 (257)
477 cd03214 ABC_Iron-Siderophores_ 96.7 0.0023 4.9E-08 38.4 3.3 21 3-23 28-48 (180)
478 TIGR01978 sufC FeS assembly AT 96.7 0.0015 3.1E-08 40.7 2.5 21 3-23 29-49 (243)
479 PRK13539 cytochrome c biogenes 96.7 0.0022 4.8E-08 39.2 3.3 22 3-24 31-52 (207)
480 cd03247 ABCC_cytochrome_bd The 96.7 0.0023 5E-08 38.3 3.3 21 3-23 31-51 (178)
481 cd03116 MobB Molybdenum is an 96.7 0.0018 3.8E-08 38.6 2.7 22 1-22 1-23 (159)
482 cd03298 ABC_ThiQ_thiamine_tran 96.7 0.0023 4.9E-08 39.1 3.3 21 3-23 27-47 (211)
483 PHA02530 pseT polynucleotide k 96.7 0.0016 3.4E-08 41.8 2.6 21 3-23 5-25 (300)
484 cd03229 ABC_Class3 This class 96.7 0.0024 5.3E-08 38.2 3.3 21 3-23 29-49 (178)
485 cd03254 ABCC_Glucan_exporter_l 96.7 0.0023 5E-08 39.5 3.3 22 3-24 32-53 (229)
486 cd02027 APSK Adenosine 5'-phos 96.7 0.0018 4E-08 37.9 2.7 21 3-23 2-22 (149)
487 cd01130 VirB11-like_ATPase Typ 96.7 0.0018 3.8E-08 39.2 2.6 21 3-23 28-48 (186)
488 PRK13538 cytochrome c biogenes 96.7 0.0024 5.3E-08 38.9 3.3 21 3-23 30-50 (204)
489 TIGR03410 urea_trans_UrtE urea 96.7 0.0023 5.1E-08 39.6 3.2 21 3-23 29-49 (230)
490 TIGR02323 CP_lyasePhnK phospho 96.7 0.0024 5.2E-08 40.1 3.3 21 3-23 32-52 (253)
491 PRK14273 phosphate ABC transpo 96.7 0.0029 6.2E-08 39.8 3.6 22 3-24 36-57 (254)
492 PRK13649 cbiO cobalt transport 96.7 0.0022 4.8E-08 40.9 3.1 21 3-23 36-56 (280)
493 PRK13946 shikimate kinase; Pro 96.6 0.002 4.4E-08 38.9 2.8 21 2-22 12-32 (184)
494 cd03232 ABC_PDR_domain2 The pl 96.6 0.0018 3.8E-08 39.3 2.5 21 3-23 36-56 (192)
495 PRK13975 thymidylate kinase; P 96.6 0.0017 3.8E-08 39.1 2.5 20 3-22 5-24 (196)
496 PRK09825 idnK D-gluconate kina 96.6 0.0019 4.2E-08 38.9 2.7 20 3-22 6-25 (176)
497 PRK14527 adenylate kinase; Pro 96.6 0.0019 4.1E-08 39.1 2.7 20 3-22 9-28 (191)
498 KOG1486|consensus 96.6 0.0039 8.5E-08 40.5 4.1 54 2-58 64-118 (364)
499 PRK13543 cytochrome c biogenes 96.6 0.0025 5.5E-08 39.2 3.2 21 3-23 40-60 (214)
500 PRK10895 lipopolysaccharide AB 96.6 0.0025 5.5E-08 39.7 3.2 21 3-23 32-52 (241)
No 1
>KOG0084|consensus
Probab=99.98 E-value=7.7e-33 Score=167.19 Aligned_cols=75 Identities=25% Similarity=0.538 Sum_probs=73.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+||+|||+|||||||+.||..+.|++.|..|+|+||..+++.++++.++|+||||||||||++ +..+|||+|||.
T Consensus 11 KiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrt--it~syYR~ahGi 85 (205)
T KOG0084|consen 11 KIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRT--ITSSYYRGAHGI 85 (205)
T ss_pred EEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhh--hhHhhccCCCeE
Confidence 589999999999999999999999999999999999999999999999999999999999999 999999999984
No 2
>KOG0094|consensus
Probab=99.97 E-value=8.4e-31 Score=158.55 Aligned_cols=75 Identities=28% Similarity=0.566 Sum_probs=72.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|++||.+||||||+.||+.+.|...|.+|||+||..+++.+.++.+.|++|||||||||++ +.|+|+|++.+|
T Consensus 24 KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrs--lipsY~Rds~va 98 (221)
T KOG0094|consen 24 KLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--LIPSYIRDSSVA 98 (221)
T ss_pred EEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhh--hhhhhccCCeEE
Confidence 589999999999999999999999999999999999999999999999999999999999999 999999999875
No 3
>KOG0080|consensus
Probab=99.96 E-value=1.4e-29 Score=149.96 Aligned_cols=75 Identities=25% Similarity=0.425 Sum_probs=72.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|++||++|||||||+.||..+.|.+....|+|+||..+.+.++++.++|-||||+|||+|+. +.|+|||+|.|+
T Consensus 13 KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt--LTpSyyRgaqGi 87 (209)
T KOG0080|consen 13 KILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT--LTPSYYRGAQGI 87 (209)
T ss_pred EEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhc--cCHhHhccCcee
Confidence 689999999999999999999999998888899999999999999999999999999999999 999999999874
No 4
>KOG0092|consensus
Probab=99.96 E-value=1.1e-29 Score=153.08 Aligned_cols=75 Identities=27% Similarity=0.475 Sum_probs=72.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|++|+++||||||+.||..++|.+...||+|.-|..+++.+++..++|+||||+|||||.+ +.|.|||+|++|
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s--lapMYyRgA~AA 81 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS--LAPMYYRGANAA 81 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccc--cccceecCCcEE
Confidence 589999999999999999999999998899999999999999999999999999999999999 999999999986
No 5
>KOG0078|consensus
Probab=99.95 E-value=2.3e-28 Score=148.95 Aligned_cols=75 Identities=25% Similarity=0.513 Sum_probs=72.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+|||++||||||+.||.++.|...+..|+|+||..++++++++.++|++|||+||++|+. +.++|||+|++.
T Consensus 14 kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t--i~~sYyrgA~gi 88 (207)
T KOG0078|consen 14 KLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT--ITTAYYRGAMGI 88 (207)
T ss_pred EEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH--HHHHHHhhcCee
Confidence 689999999999999999999999999999999999999999999999999999999999999 999999999874
No 6
>KOG0394|consensus
Probab=99.95 E-value=1.5e-28 Score=147.67 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=72.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|+++||+|||||||++||...+|..+|..|||.+|-+|.+.++++.+.|+||||+|||||++ +.-.+||+||+
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqs--Lg~aFYRgaDc 84 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQS--LGVAFYRGADC 84 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhh--cccceecCCce
Confidence 3689999999999999999999999999999999999999999999999999999999999999 99999999986
No 7
>KOG0095|consensus
Probab=99.95 E-value=5.3e-28 Score=142.19 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=72.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+||+||+.|||||||+.||.++-||+-.-.|+|++|..+++++++.+++|+||||+|||+|++ +..+|||.||+
T Consensus 9 kivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrs--itqsyyrsaha 82 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS--ITQSYYRSAHA 82 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH--HHHHHhhhcce
Confidence 589999999999999999999999999999999999999999999999999999999999999 99999999986
No 8
>KOG0098|consensus
Probab=99.94 E-value=1.3e-27 Score=143.97 Aligned_cols=75 Identities=27% Similarity=0.463 Sum_probs=72.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+.+++||.|||||||+.||+++.|.+.+..|+|++|..+.++++++.++|+||||+|||+|++ +.++|||+|.||
T Consensus 8 KyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs--v~~syYr~a~Ga 82 (216)
T KOG0098|consen 8 KYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS--VTRSYYRGAAGA 82 (216)
T ss_pred EEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH--HHHHHhccCcce
Confidence 478999999999999999999999999999999999999999999999999999999999999 999999999886
No 9
>KOG0079|consensus
Probab=99.94 E-value=2.8e-27 Score=138.70 Aligned_cols=74 Identities=28% Similarity=0.489 Sum_probs=71.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+.++|||+|||||+|+.||..+.|...|..|+|.||..+++.+++..++|+|||++|||+|+. +...|||+.|+
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt--itstyyrgthg 83 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT--ITSTYYRGTHG 83 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH--HHHHHccCCce
Confidence 367899999999999999999999999999999999999999999999999999999999999 99999999886
No 10
>KOG0086|consensus
Probab=99.93 E-value=6.3e-27 Score=138.02 Aligned_cols=75 Identities=24% Similarity=0.468 Sum_probs=72.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+.|.|||||+++|+.++|.++-..|+|++|..+.+.++++.++|+||||+|||+|++ ..++|||+|.||
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRS--VtRsYYRGAAGA 85 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRS--VTRSYYRGAAGA 85 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHH--HHHHHhccccce
Confidence 589999999999999999999999999999999999999999999999999999999999999 999999999886
No 11
>KOG0087|consensus
Probab=99.93 E-value=1.4e-26 Score=141.31 Aligned_cols=75 Identities=23% Similarity=0.404 Sum_probs=72.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+|||++||||-|+.||..++|..+-.+|+|++|..+++.++++.++.+||||||||||+. +...|||+|.||
T Consensus 16 KiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrA--itSaYYrgAvGA 90 (222)
T KOG0087|consen 16 KIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRA--ITSAYYRGAVGA 90 (222)
T ss_pred EEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcc--ccchhhccccee
Confidence 589999999999999999999999999999999999999999999999999999999999999 999999999987
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.93 E-value=1.1e-25 Score=137.96 Aligned_cols=76 Identities=24% Similarity=0.464 Sum_probs=72.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+.|+++|+.|||||||+.||..+.|.++|.||++.+|..+.+.++++.+++++|||+|+++|+. +++.||+++||+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~--l~~~y~~~ad~i 76 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS--ITSAYYRSAKGI 76 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH--HHHHHhcCCCEE
Confidence 4689999999999999999999999999999999999888999999999999999999999999 999999999974
No 13
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.92 E-value=5.6e-25 Score=132.83 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=69.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.||..+.|+++|.||++.++ .+.+.+++..++++||||+|+++|+. +++.||+++|++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~--~~~~~~~~ad~~ 80 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDN--VRPLSYPDSDAV 80 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHh--hhhhhcCCCCEE
Confidence 4689999999999999999999999999999998766 67788999999999999999999999 999999999873
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.92 E-value=1e-24 Score=131.17 Aligned_cols=75 Identities=23% Similarity=0.398 Sum_probs=69.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.||..++|+++|.||++..+ .+.+.++++.++++||||+|+++|+. +++.||++++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~--~~~~~~~~a~~~ 76 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNR--LRPLSYRGADVF 76 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccc--cchhhcCCCcEE
Confidence 4789999999999999999999999999999998766 66778899999999999999999999 999999999874
No 15
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.92 E-value=7.5e-25 Score=132.66 Aligned_cols=74 Identities=23% Similarity=0.409 Sum_probs=68.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.||..+.|+++|.||++.++ .+.+.++++.++++||||+|+++|+. +++.||+++|++
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~--l~~~~~~~a~~~ 78 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDR--LRTLSYPQTNVF 78 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhh--hhhhhccCCCEE
Confidence 689999999999999999999999999999998666 56678899999999999999999999 999999999874
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=8.3e-25 Score=131.54 Aligned_cols=75 Identities=15% Similarity=0.317 Sum_probs=69.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.+|..+.|+++|.||++.++ .+.+.++++.++++||||+|+++|.. +++.||++++++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~--~~~~~~~~a~~~ 76 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDN--VRPLCYPDSDAV 76 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhh--cchhhcCCCCEE
Confidence 5799999999999999999999999999999998776 67788999999999999999999999 999999999874
No 17
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.91 E-value=2.2e-24 Score=130.02 Aligned_cols=75 Identities=20% Similarity=0.404 Sum_probs=71.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|+++||||||+.||..++|.++|.||++.++..+.+.+++..+.++|||++|+++|+. +++.+++++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~--~~~~~~~~a~~ 75 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN--MLPLVCNDAVA 75 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH--hhHHHCcCCCE
Confidence 5789999999999999999999999999999999999888899999999999999999999999 99999999986
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=1.5e-24 Score=135.37 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=69.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|++||+++||||||+.+|..+.|+++|.||++.++ .+.+.++++.+.|+||||+|+++|+. +++.||++||++
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~--~~~~~~~~ad~v 88 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDN--VRPLCYSDSDAV 88 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHH--HHHHHcCCCcEE
Confidence 689999999999999999999999999999998877 56788999999999999999999999 999999999874
No 19
>KOG0091|consensus
Probab=99.91 E-value=9.5e-26 Score=134.02 Aligned_cols=74 Identities=28% Similarity=0.445 Sum_probs=69.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEE-CCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTI-QNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++|||+.||||||+.+|.+++|.+--.||+|+||+.+.+++ ++..++|++|||+|||+|++ +.++|||++-|
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrs--itksyyrnsvg 84 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRS--ITKSYYRNSVG 84 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHH--HHHHHhhcccc
Confidence 5789999999999999999999999989999999999888877 57899999999999999999 99999999754
No 20
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.91 E-value=2.7e-24 Score=133.51 Aligned_cols=75 Identities=15% Similarity=0.311 Sum_probs=70.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|++||+.+||||||+.+|..+.|+++|.||++.++ ...+.++++.+.|.||||+|++.|.. +++.+|+++|++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~--l~~~~~~~~d~i 76 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDN--VRPLAYPDSDAV 76 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHH--HhHHhccCCCEE
Confidence 5799999999999999999999999999999998777 56788999999999999999999999 999999999974
No 21
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.90 E-value=7.1e-24 Score=128.77 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=71.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|+++|+.+||||||+.+|..++|.+++.||++.++..+.+.+++..++|++||++|+++|+. +++.||+++|+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~--l~~~~~~~ad~ 81 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT--IFRSYSRGAQG 81 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH--HHHHHhcCCCE
Confidence 4789999999999999999999999989999999999888889999999999999999999999 99999999987
No 22
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.90 E-value=9.7e-24 Score=126.33 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=68.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.+|..++|+++|.||++.++ .+.+.+++..+++.||||+|+++|.. +++.+|+++|++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~a~~~ 76 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDR--LRPLSYPQTDVF 76 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhh--hhhhhcccCCEE
Confidence 4789999999999999999999999999999998776 55678899999999999999999999 999999999874
No 23
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.90 E-value=1.2e-23 Score=129.09 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=69.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC-----CEEEEEEEecCCCCCccCCcCchHhhhccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-----NRGVKLILWDIGGKANESSAGLVKTYLSSA 75 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-----~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~ 75 (78)
++++++|+++||||||+.+|+.+.|.+++.||++.++..+.+.++ ++.+.++|||++|+++|+. +++.||+++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~--l~~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS--TRAVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH--HHHHHhCcC
Confidence 579999999999999999999999999999999998887877774 5789999999999999999 999999999
Q ss_pred ccC
Q psy2599 76 NIS 78 (78)
Q Consensus 76 ~~~ 78 (78)
|+.
T Consensus 79 d~i 81 (202)
T cd04102 79 NGI 81 (202)
T ss_pred CEE
Confidence 873
No 24
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.90 E-value=1.8e-23 Score=124.63 Aligned_cols=75 Identities=27% Similarity=0.520 Sum_probs=70.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++||.++.|+++|.||++.++..+.+.+++..+.+++|||+|+++|.. +++.+|+++|++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~ad~~ 76 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC--IASTYYRGAQAI 76 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh--hHHHHhcCCCEE
Confidence 689999999999999999999999999999999999888888999999999999999999999 999999999874
No 25
>KOG0097|consensus
Probab=99.90 E-value=4.3e-24 Score=125.03 Aligned_cols=74 Identities=22% Similarity=0.479 Sum_probs=71.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
-++|||-|||||||+++|...+|..+-+.|+|++|..+.+++.+++++|+||||+|||+|+. ..++|||++.||
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfra--vtrsyyrgaaga 87 (215)
T KOG0097|consen 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA--VTRSYYRGAAGA 87 (215)
T ss_pred EEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHH--HHHHHhccccce
Confidence 47899999999999999999999988899999999999999999999999999999999999 999999999876
No 26
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=4.5e-23 Score=125.43 Aligned_cols=76 Identities=32% Similarity=0.523 Sum_probs=71.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC-CEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+++||||||+++|..+.|.+.+.||++.++..+.+.++ +..+.+.+||++|+++|+. +++.||++++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~--~~~~~~~~a~~~ 77 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG--MTRVYYRGAVGA 77 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh--hHHHHhCCCCEE
Confidence 479999999999999999999999999999999999888888888 8899999999999999999 999999999874
No 27
>KOG0093|consensus
Probab=99.89 E-value=2.1e-23 Score=122.30 Aligned_cols=74 Identities=28% Similarity=0.494 Sum_probs=70.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|++.||||||+.||..+.|...+..|+|++|..+++.-..+.++++||||+|||+|+. +...|||+++|
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrt--iTTayyRgamg 96 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRT--ITTAYYRGAMG 96 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhH--HHHHHhhccce
Confidence 589999999999999999999999999999999999999988888999999999999999999 99999999876
No 28
>KOG0083|consensus
Probab=99.89 E-value=7.8e-25 Score=126.90 Aligned_cols=72 Identities=26% Similarity=0.569 Sum_probs=67.5
Q ss_pred eeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 4 LYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 4 v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
.++||+++|||||+.||.++.|. .+.+.|+|++|..+.+..++++++|+||||+|||+|++ ....|||++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs--vt~ayyrda~a 73 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS--VTHAYYRDADA 73 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh--hhHhhhcccce
Confidence 36899999999999999999985 55789999999999999999999999999999999999 99999999986
No 29
>PLN00023 GTP-binding protein; Provisional
Probab=99.89 E-value=5.6e-23 Score=133.17 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECC-------------EEEEEEEecCCCCCccCCcCc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQN-------------RGVKLILWDIGGKANESSAGL 67 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-------------~~~~l~iwD~~G~~~~~~~~~ 67 (78)
++|+++|+.|||||||+.+|+.+.|...+.||+|.++..+.+.+++ +.+.++||||+|+++|+. +
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs--L 99 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD--C 99 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh--h
Confidence 4689999999999999999999999999999999998888888753 578999999999999999 9
Q ss_pred hHhhhccCccC
Q psy2599 68 VKTYLSSANIS 78 (78)
Q Consensus 68 ~~~~~~~~~~~ 78 (78)
++.||++++++
T Consensus 100 ~~~yyr~Adgi 110 (334)
T PLN00023 100 RSLFYSQINGV 110 (334)
T ss_pred hHHhccCCCEE
Confidence 99999999874
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.89 E-value=7.3e-23 Score=120.81 Aligned_cols=75 Identities=21% Similarity=0.476 Sum_probs=70.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|+++||||||+++|..++|.+.+.||++.++..+.+.+++..+++.+||++|+++|+. +++.+|+++++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~~~ 77 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA--VTRSYYRGAAG 77 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHH--HHHHHhcCCCE
Confidence 4789999999999999999999999999999999999888888999999999999999999999 99999999987
No 31
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=1.4e-22 Score=125.21 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=70.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|++|||||||+.+|..++|...+.||++.++....+..++..+++.+|||+|+++|.. +++.||++++++
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~~~~ 89 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--LRDGYYIHGQCA 89 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhh--hhHHHcccccEE
Confidence 3689999999999999999999999999999999998877888888899999999999999999 999999999873
No 32
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.88 E-value=2e-22 Score=118.85 Aligned_cols=76 Identities=26% Similarity=0.493 Sum_probs=71.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.+|..++|.+.+.||++.++..+.+.+++..+++++||++|+++|.. +++.+++++|+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--~~~~~~~~~~~~ 76 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT--ITKQYYRRAQGI 76 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh--hHHHHhcCCcEE
Confidence 4789999999999999999999999999999999988888889999999999999999999999 999999999873
No 33
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.88 E-value=1.7e-22 Score=120.55 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=68.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+++++|+.+||||||+.+|..++|++.+.||++..+ .+.+.+++..+.+.+|||+|+++|+. +++.+|+++|++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--l~~~~~~~~d~~ 77 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTA--MRDQYMRCGEGF 77 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHH--HhHHHhhcCCEE
Confidence 3689999999999999999999999999999998666 56678899999999999999999999 999999999874
No 34
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.88 E-value=2.4e-22 Score=117.67 Aligned_cols=76 Identities=21% Similarity=0.470 Sum_probs=71.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+++||||||++++++++|++.+.||++.++..+.+.+++..+.+++|||+|+++|.. +++.+++++++.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~~ 76 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE--VRNEFYKDTQGV 76 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH--HHHHHhccCCEE
Confidence 5799999999999999999999999999999999998888889999999999999999999999 999999999863
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.88 E-value=2.8e-22 Score=117.30 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=68.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+++++|+++||||||+.++..+.|.+.+.||++ +++.+.+.+++..+.++||||+|+++|+. +++.|+++++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~~~~ 76 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTA--MRDLYIKNGQGF 76 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccch--HHHHHhhcCCEE
Confidence 3689999999999999999999999989999987 44477788999999999999999999999 999999999873
No 36
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.88 E-value=3.1e-22 Score=120.88 Aligned_cols=75 Identities=16% Similarity=0.286 Sum_probs=68.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|++|||||||+.+|..+.|++.|.||++.++ .+.+.+++..+.+.|||++|+++|+. +++.+|++++++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~--l~~~~~~~a~~~ 75 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDR--LRSLSYADTDVI 75 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccc--cccccccCCCEE
Confidence 5799999999999999999999999999999998776 56677888899999999999999999 999999998873
No 37
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.88 E-value=3.1e-22 Score=119.75 Aligned_cols=75 Identities=20% Similarity=0.389 Sum_probs=67.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+.+||||||+.||..+.|+++|.||++..+ ...+.++++.+++.||||+|+++|.. +++.+|+++|++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~~ 76 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDR--LRPLSYPQTDVF 76 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhh--hhhhhcCCCCEE
Confidence 4689999999999999999999999999999996444 66778899999999999999999999 999999999873
No 38
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.87 E-value=5.5e-22 Score=116.90 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=69.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+++||||||+.++..++|.+.+.++.+.++..+.+.++++.+.+++|||+|+++|+. +++.|++++|++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 76 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT--MHASYYHKAHAC 76 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh--hhHHHhCCCCEE
Confidence 4789999999999999999999999988889988887777788899999999999999999999 999999999873
No 39
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.87 E-value=4e-22 Score=117.66 Aligned_cols=75 Identities=29% Similarity=0.497 Sum_probs=70.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|+++||||||++++.+++|...|.||++.++..+.+..++..+.+++||++|+++|+. ++..+++++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~--~~~~~~~~~~~ 76 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT--ITTAYYRGAMG 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH--HHHHHccCCcE
Confidence 4789999999999999999999999989999999888888888888899999999999999999 99999999986
No 40
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.87 E-value=3.7e-22 Score=117.98 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=70.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|+++||||||+.+|..+.|.+++.|+++.++..+.+.+++..++++|||++|+++|+. +++.+++++|+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--~~~~~~~~~d~ 80 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS--LRTPFYRGSDC 80 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH--hHHHHhcCCCE
Confidence 4689999999999999999999999988999999888788888999999999999999999999 99999999986
No 41
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.87 E-value=7.6e-22 Score=115.84 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=68.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.+|..++|.+.+.||++ +++.+.+.+++..+.++|||++|+++|.. +++.|++++|++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~ad~~ 76 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFAS--MRDLYIKNGQGF 76 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccc--hHHHHHhhCCEE
Confidence 689999999999999999999999989999986 56677888999999999999999999999 999999999874
No 42
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.87 E-value=5.5e-22 Score=121.43 Aligned_cols=71 Identities=20% Similarity=0.383 Sum_probs=67.2
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 6 IKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 6 vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
||+++||||||+.+|+.+.|.+.|.||++.++..+.+.++++.+++.||||+|+++|+. +++.||++++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~--l~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG--LRDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh--hhHHHhcCCCEE
Confidence 69999999999999999999989999999999888888999999999999999999999 999999999874
No 43
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=1e-21 Score=116.87 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=69.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|++|||||||++||..+.|. .+|.||++.++..+.+.+++..+.+.+||++|++++.. +++.||+++|++
T Consensus 6 kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--~~~~~~~~~d~~ 81 (169)
T cd01892 6 LCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL--LNDAELAACDVA 81 (169)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc--cchhhhhcCCEE
Confidence 5899999999999999999999998 89999999888777888899999999999999999999 999999999874
No 44
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.87 E-value=9.2e-22 Score=115.70 Aligned_cols=74 Identities=16% Similarity=0.278 Sum_probs=68.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.++..+.|.+.+.||++..+ .+.+.+++..+.+++|||+|+++|+. +++.+|+++|++
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~~ 76 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTA--MRDLYMKNGQGF 76 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchh--HHHHHHhhCCEE
Confidence 689999999999999999999999988999998766 57788899999999999999999999 999999999874
No 45
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.87 E-value=7.4e-22 Score=115.67 Aligned_cols=74 Identities=24% Similarity=0.402 Sum_probs=70.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
||+++|+.+||||||+.+|.++.|++++.||++.++..+.+.+++..+.+++||++|+++|.. +++.+++++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--~~~~~~~~~~~ 74 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS--LRDIFYRNSDA 74 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH--HHHHHHTTESE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence 589999999999999999999999999999999999899999999999999999999999999 99999999886
No 46
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.87 E-value=5.3e-22 Score=116.15 Aligned_cols=76 Identities=26% Similarity=0.494 Sum_probs=70.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC--CEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ--NRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~--~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
|+|+++|+++||||||++++..+.|.+.+.||++.++..+.+.++ +..+++++||++|+++|.. +++.++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--~~~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA--ITKAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH--hHHHHhcCCCEE
Confidence 689999999999999999999999999999999988877777887 7789999999999999999 999999999873
No 47
>KOG0393|consensus
Probab=99.87 E-value=3.3e-23 Score=126.30 Aligned_cols=74 Identities=22% Similarity=0.427 Sum_probs=68.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC-CEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++|+|||++||||+|+..|..+.|+++|.||+..++ ...+.++ ++.++|.+|||+||+.|.. +++..|+++|.
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDr--lRplsY~~tdv 79 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDR--LRPLSYPQTDV 79 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCccccc--ccccCCCCCCE
Confidence 4689999999999999999999999999999997555 8889995 9999999999999999999 99999999874
No 48
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.86 E-value=6.4e-22 Score=121.64 Aligned_cols=76 Identities=25% Similarity=0.487 Sum_probs=70.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECC-EEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQN-RGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+++|.++.|...|.||++.+++.+.+.+++ ..+.++|||++|++.|.. +++.||+++|+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~--l~~~~~~~ad~i 77 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK--MLDKYIYGAHAV 77 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH--HHHHHhhcCCEE
Confidence 5799999999999999999999999999999999999888888865 589999999999999999 999999999873
No 49
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.86 E-value=1.1e-21 Score=114.28 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=67.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
.+++++|+++||||||+++|..++|..++.||.+..+ .+.+.+++..+.+++||++|+++|+. +++.|++++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--l~~~~~~~~~~ 75 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSA--MRDQYMRTGEG 75 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHH--HHHHHHhcCCE
Confidence 3689999999999999999999999989999997655 67778899999999999999999999 99999999886
No 50
>KOG0081|consensus
Probab=99.86 E-value=5.3e-24 Score=126.31 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=67.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC---------CEEEEEEEecCCCCCccCCcCchHhhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ---------NRGVKLILWDIGGKANESSAGLVKTYL 72 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~---------~~~~~l~iwD~~G~~~~~~~~~~~~~~ 72 (78)
+.+.+||+||||||++.||.+++|..+.+.|+|+||..|.+.++ +..+.|++|||+|||+|++ +...||
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS--LTTAFf 88 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS--LTTAFF 88 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH--HHHHHH
Confidence 45779999999999999999999999999999999998888774 3478999999999999999 999999
Q ss_pred ccCcc
Q psy2599 73 SSANI 77 (78)
Q Consensus 73 ~~~~~ 77 (78)
|+|-|
T Consensus 89 RDAMG 93 (219)
T KOG0081|consen 89 RDAMG 93 (219)
T ss_pred Hhhcc
Confidence 99854
No 51
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.86 E-value=1.9e-21 Score=117.16 Aligned_cols=76 Identities=22% Similarity=0.418 Sum_probs=70.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCC-CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTR-QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+++||||||+.+|..++|.. .|.||++.++..+.+.+++..+.+.+||++|+++++. +++.+|+++|++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--~~~~~~~~~d~i 77 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA--MSRIYYRGAKAA 77 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh--hhHhhcCCCCEE
Confidence 579999999999999999999999974 6899999888788889999999999999999999999 999999998863
No 52
>PTZ00369 Ras-like protein; Provisional
Probab=99.86 E-value=1.9e-21 Score=117.40 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=68.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.+|..++|.+.+.||++.++ .+.+.+++..+.+++|||+|+++|.. +++.|+++++++
T Consensus 7 Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--l~~~~~~~~d~i 80 (189)
T PTZ00369 7 KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSA--MRDQYMRTGQGF 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchh--hHHHHhhcCCEE
Confidence 589999999999999999999999989999998777 67788999999999999999999999 999999998873
No 53
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=1.5e-21 Score=117.92 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=67.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.+|..+.|.+.+.||++..+ .+.+.+++..+.+++|||+|+++|+. +++.||+++|+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~ad~~ 74 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTA--LRDQWIREGEGF 74 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHH--HHHHHHHhCCEE
Confidence 589999999999999999999999988999998665 56677889999999999999999999 999999999873
No 54
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.86 E-value=1.9e-21 Score=114.98 Aligned_cols=76 Identities=25% Similarity=0.514 Sum_probs=70.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+|+++|+++||||||+.+|..+.|.+.|.||++.++..+.+.+++..+.+++||++|+++|.. +++.+++++|++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~--~~~~~~~~ad~~ 79 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT--ITTAYYRGAMGI 79 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH--HHHHHhCCCCEE
Confidence 3789999999999999999999999999999999988888888999999999999999999999 999999999873
No 55
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.86 E-value=1.2e-21 Score=116.72 Aligned_cols=76 Identities=25% Similarity=0.407 Sum_probs=68.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC----------CEEEEEEEecCCCCCccCCcCchHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ----------NRGVKLILWDIGGKANESSAGLVKT 70 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~----------~~~~~l~iwD~~G~~~~~~~~~~~~ 70 (78)
++++++|+++||||||+.+|..+.|.+.+.||++.++..+.+.+. +..+.++|||++|+++|+. +++.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~ 82 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRS--LTTA 82 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHH--HHHH
Confidence 468999999999999999999999999999999999877777664 4578999999999999999 9999
Q ss_pred hhccCccC
Q psy2599 71 YLSSANIS 78 (78)
Q Consensus 71 ~~~~~~~~ 78 (78)
+++++|+.
T Consensus 83 ~~~~~~~~ 90 (180)
T cd04127 83 FFRDAMGF 90 (180)
T ss_pred HhCCCCEE
Confidence 99999873
No 56
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.86 E-value=2.8e-21 Score=117.57 Aligned_cols=74 Identities=27% Similarity=0.480 Sum_probs=69.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|++|||||||+.+|..+.|...+.||++.++....+.+++..+.+.|||++|+++|+. ++..+++++++
T Consensus 8 kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--~~~~~~~~a~~ 81 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT--ITSTYYRGTHG 81 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH--HHHHHhCCCcE
Confidence 689999999999999999999999989999999998888888889999999999999999999 99999999886
No 57
>KOG0088|consensus
Probab=99.85 E-value=6.1e-23 Score=121.72 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=71.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|++|+..||||||+.||+.++|..+...|+...|-.+.+.+.++...|.||||+|||+|.. +-|.|||++|||
T Consensus 15 K~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHA--LGPIYYRgSnGa 89 (218)
T KOG0088|consen 15 KIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHA--LGPIYYRGSNGA 89 (218)
T ss_pred EEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhc--cCceEEeCCCce
Confidence 589999999999999999999999999999998889899999999999999999999999999 999999999987
No 58
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.85 E-value=3.6e-21 Score=113.37 Aligned_cols=75 Identities=27% Similarity=0.561 Sum_probs=70.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|+++||||+|+.++.++.|...+.||.+.++..+.+.+++..+.+++||++|+++|.. +++.+++++++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--~~~~~~~~~~~ 77 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT--ITSSYYRGAHG 77 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH--HHHHHhCcCCE
Confidence 3689999999999999999999999988999999998888888999999999999999999999 99999999886
No 59
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.85 E-value=5.7e-21 Score=113.30 Aligned_cols=75 Identities=19% Similarity=0.337 Sum_probs=69.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||++++..+.|..++.||++.++....+..++..+.+.+|||+|++++.. +++.+|+++|+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~~ 76 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--LRDGYYIGGQCA 76 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--ccHHHhcCCCEE
Confidence 689999999999999999999999989999999888777777888899999999999999999 999999999873
No 60
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=2.4e-21 Score=116.18 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=67.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC-CEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+.+||||||+++|..+.|++.+.||++.++ ...+... +..+.+.||||+|+++|.. +++.+++++|++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~ad~i 76 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENY-VTNIQGPNGKIIELALWDTAGQEEYDR--LRPLSYPDVDVL 76 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeee-EEEEEecCCcEEEEEEEECCCchhHHH--HHHHhCCCCCEE
Confidence 5799999999999999999999999999999998776 4456665 7789999999999999999 999999999874
No 61
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=3.9e-21 Score=115.63 Aligned_cols=76 Identities=32% Similarity=0.484 Sum_probs=70.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+|+++|+++||||||+++|.++.|...|.||++.++..+.+.+++..+.+++||++|+++|.. +++.+++++|+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--~~~~~~~~~d~i 76 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS--LNNSYYRGAHGY 76 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh--hHHHHccCCCEE
Confidence 4789999999999999999999999988999999888888888999999999999999999999 999999999873
No 62
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.85 E-value=4.3e-21 Score=113.83 Aligned_cols=76 Identities=24% Similarity=0.466 Sum_probs=69.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC-CcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES-SAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~-~~~~~~~~~~~~~~~ 78 (78)
++|+++|++|||||||+.++..+.|+..+.||++.++..+.+.+++..+.+++||++|+++|+ . +++.+++++|++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~d~~ 79 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKS--MVQHYYRNVHAV 79 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHh--hHHHhhcCCCEE
Confidence 368999999999999999999999998999999999888888999999999999999999997 5 899999999874
No 63
>PLN03110 Rab GTPase; Provisional
Probab=99.85 E-value=4.1e-21 Score=118.33 Aligned_cols=74 Identities=24% Similarity=0.395 Sum_probs=70.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|+++||||+|+.+|.++.|..++.||++.++..+.+.+++..+.++|||++|+++|.. +++.+++++++
T Consensus 14 Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~--~~~~~~~~~~~ 87 (216)
T PLN03110 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA--ITSAYYRGAVG 87 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH--HHHHHhCCCCE
Confidence 689999999999999999999999888999999999888999999999999999999999999 99999999986
No 64
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.85 E-value=8.5e-21 Score=112.37 Aligned_cols=73 Identities=21% Similarity=0.397 Sum_probs=66.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++|+++||||||+.+|..+.|+..|.|++...+ ...+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 73 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDR--LRPLSYPDTDVF 73 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccch--hchhhcCCCCEE
Confidence 68999999999999999999999999999987655 66778899999999999999999999 999999999874
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.84 E-value=7.1e-21 Score=111.52 Aligned_cols=75 Identities=25% Similarity=0.488 Sum_probs=70.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|+++||||||++++..+++...+.++.+.++..+.+.+++..+.+++||++|+++|.. +++.+++++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--~~~~~~~~~~~ 75 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS--VTRSYYRGAAG 75 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH--hHHHHhcCCCE
Confidence 5899999999999999999999999989999999888888888999999999999999999999 99999999886
No 66
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.84 E-value=5.3e-21 Score=120.24 Aligned_cols=74 Identities=22% Similarity=0.375 Sum_probs=68.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
.+|+++|+.+||||||+.+|+.++|+++|.||++ ++..+.+.++++.+.++||||+|+++|.. +++.+++++|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~--~~~~~~~~ad~ 74 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPA--MRRLSILTGDV 74 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhH--HHHHHhccCCE
Confidence 3689999999999999999999999999999996 66678889999999999999999999999 99999999886
No 67
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=5.6e-21 Score=117.46 Aligned_cols=75 Identities=29% Similarity=0.471 Sum_probs=69.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEE-CCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTI-QNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|+++|+++||||||+++|..+.|...+.||++.++..+.+.+ ++..+.+++||++|+++|.. +++.||+++|+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~ 78 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS--ITRSYYRNSVG 78 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH--HHHHHhcCCcE
Confidence 47899999999999999999999999889999999998888877 46789999999999999999 99999999986
No 68
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.84 E-value=3.2e-21 Score=117.89 Aligned_cols=76 Identities=29% Similarity=0.350 Sum_probs=69.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|++|||||||+.+|..+.|.+.+.||++..+........+..+++.+|||+||++|+. +++.||++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~--~~~~y~~~~~~~ 81 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRS--LRPEYYRGANGI 81 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHH--HHHHHhcCCCEE
Confidence 4799999999999999999999999999999999888777777766799999999999999999 999999999874
No 69
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.84 E-value=1.3e-20 Score=111.96 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=67.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|++|||||||+.+|..+.|..+|.||. .+++...+.+++..+++++||++|+++|.. +++.+++++|++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~a~~~ 75 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDK--LRPLCYPDTDVF 75 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhcc--ccccccCCCcEE
Confidence 478999999999999999999999999999997 455567788899899999999999999999 999999999874
No 70
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.83 E-value=1.6e-20 Score=111.24 Aligned_cols=74 Identities=19% Similarity=0.424 Sum_probs=67.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
.+++++|+++||||||+.+|..+.|++.|.||++..+ ...+.++++.+.+.+|||+|+++|+. +++.+++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~ 75 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDR--LRPLSYPDTDV 75 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhh--ccccccCCCCE
Confidence 3689999999999999999999999999999998766 45678889999999999999999999 99999998876
No 71
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.83 E-value=2.4e-20 Score=110.30 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=68.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+++|.++.|...+.||++..+ .+.+.+++..+.+++||++|+++|.. +++.++++++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 76 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTA--MRELYIKSGQGF 76 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchh--hhHHHHhhCCEE
Confidence 4789999999999999999999999988999997655 67788899999999999999999999 999999998863
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.83 E-value=2.2e-20 Score=109.56 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=67.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+|+++|+++||||||++++..+.|.+.+.||....+ .+.+.+++..+.+++|||+|+++|.. +++.++++++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~--~~~~~~~~~~~~ 75 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSA--MRDQYMRTGEGF 75 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchH--HHHHHHhhCCEE
Confidence 3789999999999999999999999989999986444 67778889999999999999999999 999999998874
No 73
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.83 E-value=2.9e-20 Score=109.69 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=67.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+++++|++|||||||+++|..+.|...+.||.+..+ .+.+..+.+.+.+.+|||+|+++|.. +++.++++++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~~~~ 76 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPA--MQRLSISKGHAF 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchH--HHHHHhhcCCEE
Confidence 3689999999999999999999999989999987655 66667788889999999999999999 999999998863
No 74
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=1.7e-20 Score=110.52 Aligned_cols=74 Identities=30% Similarity=0.522 Sum_probs=69.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|++|+|||||+.++..+.|...+.+|.+.++..+.+.+++..+.+.+||++|+++|.. +++.+++++|+
T Consensus 5 kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--~~~~~~~~~d~ 78 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRT--ITQSYYRSANG 78 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHH--HHHHHhccCCE
Confidence 689999999999999999999999988999999888888888999889999999999999999 99999999886
No 75
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=2.5e-20 Score=112.65 Aligned_cols=76 Identities=25% Similarity=0.486 Sum_probs=69.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.+|..++|. .++.||++.++..+.+.+++..+.+.||||+|+++|.. ++..+++++|++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~ad~~ 77 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS--VTHAYYRDAHAL 77 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH--hhHHHccCCCEE
Confidence 47899999999999999999999986 46889999888777888999999999999999999999 999999998863
No 76
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.83 E-value=3e-20 Score=109.21 Aligned_cols=74 Identities=23% Similarity=0.390 Sum_probs=69.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|+++||||+|++++..+.|...+.||.+.++..+.+.+++..+.+++||++|++++.. +++.+++++++
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~~~~~~~~~~~ 78 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA--ITSAYYRGAVG 78 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH--HHHHHHCCCCE
Confidence 689999999999999999999999988999999988888888999999999999999999999 99999999875
No 77
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.83 E-value=4.1e-20 Score=108.21 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=67.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.++..+.+...+.||.+..+ .+.+.+++..+.+++|||+|+++|.. +++.+++++|++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 77 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSA--MREQYMRTGEGF 77 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhH--HHHHHHhhCCEE
Confidence 4789999999999999999999999888999987555 66677899999999999999999999 999999999874
No 78
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.83 E-value=1.3e-20 Score=111.65 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=62.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.|+++|+.+||||||+.+|..+.|.+.+.||++.++ +.++...+++.+||++|+++|+. +++.+|+++|++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~ad~i 71 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRK--YWKRYLSGSQGL 71 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhH--HHHHHHhhCCEE
Confidence 378999999999999999999999989999998653 34556778999999999999999 999999999874
No 79
>PLN03108 Rab family protein; Provisional
Probab=99.83 E-value=3.1e-20 Score=113.99 Aligned_cols=75 Identities=27% Similarity=0.470 Sum_probs=70.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+.+||||||++++..++|...+.||++.++....+.+++..+.+.+||++|+++|.. +++.+++++|++
T Consensus 8 kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~--~~~~~~~~ad~~ 82 (210)
T PLN03108 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS--ITRSYYRGAAGA 82 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--HHHHHhccCCEE
Confidence 689999999999999999999999988999999998888889999999999999999999999 999999998863
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.82 E-value=3.7e-20 Score=108.41 Aligned_cols=76 Identities=22% Similarity=0.418 Sum_probs=70.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+++++|+++||||+|++++..+++...+.||.+.++..+.+.+++..+++.+||++|++++.. +++.+++++|++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~--~~~~~~~~~~~~ 77 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS--LAPMYYRGAAAA 77 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH--HHHHHhccCCEE
Confidence 4789999999999999999999999888899999888888889999999999999999999999 999999998874
No 81
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.82 E-value=4.4e-20 Score=109.31 Aligned_cols=76 Identities=25% Similarity=0.458 Sum_probs=70.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+++++|+++||||+|+.++..+++...+.||.+.++....+.+++..+.+.+||++|+++|.. +++.+++++|++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~i 80 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS--ITRSYYRGAAGA 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH--HHHHHhccCCEE
Confidence 3689999999999999999999999988999999998888888999899999999999999999 999999998863
No 82
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.82 E-value=2.5e-20 Score=109.33 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=67.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC--CCCCCCCCCCCceeEEEEEEEC-CEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD--EFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~--~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|+++||||||++++..+ .|+++|.||++.++..+.+.++ +..+++.+||++|++++.. +++.+++++|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD--MVSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH--HHHHHhCCCCE
Confidence 47899999999999999999865 7889999999999877777775 5679999999999999999 99999999886
Q ss_pred C
Q psy2599 78 S 78 (78)
Q Consensus 78 ~ 78 (78)
+
T Consensus 79 i 79 (164)
T cd04101 79 F 79 (164)
T ss_pred E
Confidence 3
No 83
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.82 E-value=6e-20 Score=108.71 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=67.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|++++|||||+++|..+.|.+.+.||+...+ ...+.+++..+.+.+|||+|+++|.. +++.++++++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 75 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDR--LRPLSYPMTDVF 75 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccc--cccccCCCCCEE
Confidence 5789999999999999999999999988999986444 56778899999999999999999999 999999998863
No 84
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=5.7e-20 Score=108.30 Aligned_cols=76 Identities=25% Similarity=0.452 Sum_probs=70.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+++||||||++++.++.+...+.+|++.++..+.+.+++..+.+.+||++|++.|.. +++.++++++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~~~~~~~~~d~~ 76 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS--LGVAFYRGADCC 76 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh--HHHHHhcCCCEE
Confidence 4789999999999999999999999888899999888788888999999999999999999999 999999999864
No 85
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=7.1e-20 Score=112.15 Aligned_cols=75 Identities=27% Similarity=0.434 Sum_probs=68.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.+|..+.+. .+.||.+.++..+.+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~--~~~~~~~~~d~~ 89 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT--LTSSYYRNAQGI 89 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH--HHHHHHhcCCEE
Confidence 46899999999999999999998875 6889999888788888888899999999999999999 999999999873
No 86
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.82 E-value=2.4e-20 Score=109.93 Aligned_cols=71 Identities=18% Similarity=0.379 Sum_probs=61.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
|+++++|+++||||||+.++..++|. .+.||++.++. .+.. ..+.+.+||++|+++|.. +++.||+++|++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~--~~~~~~~~ad~~ 71 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRP--LWRHYFQNTQGL 71 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHH--HHHHHhcCCCEE
Confidence 78999999999999999999988887 58999987652 3444 468899999999999999 999999999873
No 87
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=1e-19 Score=111.67 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=69.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
.+++++|++|||||||+.+++.+.|...|.||++.++....+..++..+.+++||++|+++|.. ++..+++++++
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~--~~~~~~~~~~~ 84 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG--LRDGYYIKGQC 84 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhh--hhHHHhccCCE
Confidence 3689999999999999999999999999999999998887777888999999999999999999 99999998875
No 88
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.81 E-value=8.6e-20 Score=106.67 Aligned_cols=74 Identities=28% Similarity=0.561 Sum_probs=69.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|+++||||||++++...++...+.|+.+.++..+.+.+++..+.+++||++|+++++. +++.+++++++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--~~~~~~~~~~~ 75 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS--LIPSYIRDSSV 75 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHH--HHHHHhccCCE
Confidence 689999999999999999999999888999999999888888998889999999999999999 99999999886
No 89
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.81 E-value=9.5e-20 Score=113.02 Aligned_cols=71 Identities=21% Similarity=0.364 Sum_probs=62.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.+|..++|.+ +.||++.++..+.+ ..+.+.||||+|+++|+. +++.||+++|++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~--l~~~~~~~ad~~ 71 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHG--LGSMYCRGAAAV 71 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchh--hHHHHhccCCEE
Confidence 579999999999999999999999985 78999887754433 568899999999999999 999999999874
No 90
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=1.1e-19 Score=110.89 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=57.4
Q ss_pred CCceeEcCCCCCHHHHHH-HHHhC-----CCCCCCCCCCCc-eeEEEE--------EEECCEEEEEEEecCCCCCccCCc
Q psy2599 1 MAPLYIKVLTEGTSCFST-RYTQD-----EFTRQYYPTSGP-DFHLKL--------LTIQNRGVKLILWDIGGKANESSA 65 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~-~~~~~-----~~~~~~~~t~~~-~~~~~~--------i~~~~~~~~l~iwD~~G~~~~~~~ 65 (78)
++++++|+++||||||+. ++.++ .|.++|.||++. +.+... +.++++.++|+||||+|+++ .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h-
Confidence 478999999999999996 66544 456778999963 332322 25789999999999999986 5
Q ss_pred CchHhhhccCcc
Q psy2599 66 GLVKTYLSSANI 77 (78)
Q Consensus 66 ~~~~~~~~~~~~ 77 (78)
+++.||+++|+
T Consensus 80 -~~~~~~~~ad~ 90 (195)
T cd01873 80 -DRRFAYGRSDV 90 (195)
T ss_pred -hhcccCCCCCE
Confidence 67789999987
No 91
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.80 E-value=2.7e-19 Score=104.62 Aligned_cols=75 Identities=29% Similarity=0.494 Sum_probs=69.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|+++||||||++++....+...+.++++.++....+.+++..+.+++||++|+++|.. +++.+++.+|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--~~~~~~~~~d~ 75 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS--ITSSYYRGAVG 75 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH--HHHHHhCCCCE
Confidence 5799999999999999999999999888899999888888888999999999999999999999 99999999886
No 92
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.80 E-value=5.6e-19 Score=103.35 Aligned_cols=76 Identities=32% Similarity=0.490 Sum_probs=69.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+++++|+++||||||++++.++.+...+.|+.+.++....+.+++..+.+.+||++|++++.. +++.+++++|+.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~~~~~~~~~d~~ 76 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT--LTSSYYRGAQGV 76 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh--hhHHHhCCCCEE
Confidence 4789999999999999999999999888899999888777788888899999999999999999 999999998863
No 93
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.79 E-value=5.7e-19 Score=107.80 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=63.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCc--------hHhhh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL--------VKTYL 72 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~--------~~~~~ 72 (78)
.+|+++|+++||||||+++|..++|+..|.||.+.+++.+.+.++++.+.+.||||+|.++|.. . ...++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~e~~~~~~~~~ 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG--TAGQEWMDPRFRGL 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc--cchhHHHHHHHhhh
Confidence 4789999999999999999999999999999998787777788899999999999999876643 2 23456
Q ss_pred ccCccC
Q psy2599 73 SSANIS 78 (78)
Q Consensus 73 ~~~~~~ 78 (78)
+++|++
T Consensus 79 ~~ad~i 84 (198)
T cd04142 79 RNSRAF 84 (198)
T ss_pred ccCCEE
Confidence 777763
No 94
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=8.7e-20 Score=109.85 Aligned_cols=71 Identities=18% Similarity=0.379 Sum_probs=60.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.++..++|. .+.||++.++. .+.. ..+.+++||++|+++++. +|+.||+++|++
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~--~~~~~~~~a~~i 88 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRP--LWRHYFQNTQGL 88 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHH--HHHHHhccCCEE
Confidence 36899999999999999999988887 57899987652 3333 568899999999999999 999999999873
No 95
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.79 E-value=2.5e-19 Score=107.05 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=60.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.++..++|. .+.||++.++. .+.. ..+.+++||++|+++++. +++.||+++++.
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~--~~~~~~~~ad~i 84 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRP--LWRHYYTNTQGL 84 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHH--HHHHHhCCCCEE
Confidence 36899999999999999999988885 57899987763 3334 468899999999999999 999999999873
No 96
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.79 E-value=7.1e-19 Score=103.58 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=64.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc-CCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE-SSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~-~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.+++.+.|..+|.||....+ .+.+.++++.+++++||++|++++ .. ....+++++|++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~d~~ 75 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTE--QLERSIRWADGF 75 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccc--hHHHHHHhCCEE
Confidence 589999999999999999999999888999986555 566788999999999999999974 55 778899998874
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.78 E-value=3.3e-19 Score=107.22 Aligned_cols=75 Identities=20% Similarity=0.406 Sum_probs=63.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEE-CCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTI-QNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+++++|+++||||||+.++..++|.. +.||.+.++....+.. ++..+.+.+|||+|+++|+. +++.+++++|+.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~--~~~~~~~~~d~i 79 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP--LWKSYTRCTDGI 79 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHH--HHHHHhccCCEE
Confidence 368999999999999999999988875 4788887765555554 34679999999999999999 999999999863
No 98
>KOG4252|consensus
Probab=99.78 E-value=1.7e-21 Score=117.50 Aligned_cols=75 Identities=27% Similarity=0.448 Sum_probs=71.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+.|++|..+|||||+++||+.+-|...|.-|+|.+|....+.+++..+.+.+||++||+.|.. +.+.|||+|+++
T Consensus 22 K~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDa--ItkAyyrgaqa~ 96 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDA--ITKAYYRGAQAS 96 (246)
T ss_pred EEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHH--HHHHHhccccce
Confidence 578999999999999999999999999999999999888999999999999999999999999 999999999874
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.78 E-value=9.3e-19 Score=106.34 Aligned_cols=74 Identities=16% Similarity=0.273 Sum_probs=66.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.+|..++|...+.+|+. ++..+.+.+++..+++++||++|+++|.. +++.+++++|++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--~~~~~~~~ad~v 74 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPA--MRKLSIQNSDAF 74 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhH--HHHHHhhcCCEE
Confidence 589999999999999999999999988889885 45577788888889999999999999999 999999999874
No 100
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.77 E-value=1.5e-18 Score=100.96 Aligned_cols=75 Identities=20% Similarity=0.384 Sum_probs=68.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|+++||||||++++..+.+.+.+.++...++....+.+.+..+.+.+||++|++.+.. +++.+++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~~~~~~~~~~~ 75 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA--LGPIYYRDADG 75 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH--hhHHHhccCCE
Confidence 4789999999999999999999999888888887777777788888889999999999999999 99999998886
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.77 E-value=4.3e-19 Score=105.54 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=60.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.++..++|. .+.||++.++. .+.. ..+++++||++|+++|+. +++.+|+++|+.
T Consensus 11 kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~--~~~~~~~~a~~i 80 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRP--LWRHYYTGTQGL 80 (168)
T ss_pred EEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHH--HHHHHhccCCEE
Confidence 6899999999999999999988886 47899987663 3333 568899999999999999 999999999873
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=5.7e-19 Score=106.32 Aligned_cols=70 Identities=20% Similarity=0.376 Sum_probs=60.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.++..+.|.. +.||++.++. .+.. ..+.+.+||++|+++++. +++.||+++|+.
T Consensus 19 kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~--~~~~~~~~ad~i 88 (182)
T PTZ00133 19 RILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRP--LWRHYYQNTNGL 88 (182)
T ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHH--HHHHHhcCCCEE
Confidence 68999999999999999999888875 7899987653 3333 568899999999999999 999999999873
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=3.2e-18 Score=100.70 Aligned_cols=74 Identities=22% Similarity=0.429 Sum_probs=65.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|+++||||||++++..+.+...+.|+....+ ...+..++..+++++||++|++++.. +++.+++.+|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~--~~~~~~~~~~~ 74 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDR--LRPLSYPNTDV 74 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccc--cchhhcCCCCE
Confidence 5899999999999999999999999888889885444 66677889999999999999999988 99999998886
No 104
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.76 E-value=2.9e-18 Score=101.30 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=56.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|++|||||||+.+|..+.|++.+.|+. .++ .+.+.++++.+.+.+||++|+++. .|++++|+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~~-------~~~~~~~~ 68 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPDA-------QFASWVDA 68 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCch-------hHHhcCCE
Confidence 578999999999999999999999988777764 455 577899999999999999999752 24566654
No 105
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=2.8e-18 Score=101.02 Aligned_cols=74 Identities=31% Similarity=0.509 Sum_probs=68.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|++|||||||+.++..+.+.+.+.+|++.++..+.+.+++..+.+.+||++|+++|.. +++.+++.+|+
T Consensus 9 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~~~~~~~~~d~ 82 (169)
T cd04114 9 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS--ITQSYYRSANA 82 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH--HHHHHhcCCCE
Confidence 588999999999999999999998888899998888888888999999999999999999999 99999998876
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.76 E-value=1.7e-18 Score=102.76 Aligned_cols=70 Identities=24% Similarity=0.431 Sum_probs=60.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+.+||||||+.++..+.+.. +.||++.++. .+.. ..+.+.+||++|+++++. +++.+++++|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~--~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRP--LWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcch--HHHHHhccCCEE
Confidence 58999999999999999999988874 8899987663 3333 568899999999999999 999999999874
No 107
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.76 E-value=2.5e-18 Score=102.07 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=60.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||++++... |+..+.||++.. .+.+.+ ..+++++||++|+++++. +++.||+++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~--~~~~~~~~a~~i 70 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRG--IWVNYYAEAHGL 70 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHH--HHHHHHcCCCEE
Confidence 4789999999999999999966 888899999864 344555 458899999999999999 999999999873
No 108
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.76 E-value=4.4e-18 Score=99.32 Aligned_cols=74 Identities=20% Similarity=0.358 Sum_probs=66.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.++..++|...+.|+.+..+ .+.+.+++..+.+.+||++|++++.. +++.+++.++++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--~~~~~~~~~~~~ 75 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAA--IRDNYHRSGEGF 75 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhH--HHHHHhhcCCEE
Confidence 689999999999999999999999989999987655 66778889999999999999999999 999999988763
No 109
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.76 E-value=3.6e-18 Score=98.50 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=69.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+++++|+++||||||++++..+.+...+.+|.+.++....+..++..+.+.+||++|++.+.. ++..+++++|++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~~~~~~~~~d~i 76 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS--ITPSYYRGAHGA 76 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH--HHHHHhcCCCEE
Confidence 4789999999999999999999999988899999888888888888889999999999999999 999999998863
No 110
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=1.1e-18 Score=101.98 Aligned_cols=71 Identities=13% Similarity=0.232 Sum_probs=59.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC-CCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE-FTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||+.++..+. +...+.||++..+. .+. ...+.+.+||++|+++|+. +++.+|++++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRG--LWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHH--HHHHHHccCCEE
Confidence 58999999999999999999876 46678899986542 222 3568899999999999999 999999999874
No 111
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.75 E-value=8.4e-18 Score=101.30 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=65.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|++|||||||++++..+.|++.+.||+...+ ...+.+++..+.+.+||++|+++|.. +++.+++++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~--~~~~~~~~a~~ 75 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYER--LRPLSYSKAHV 75 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccc--cchhhcCCCCE
Confidence 4789999999999999999999999988999987666 55677888889999999999999998 88888988876
No 112
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.75 E-value=6.7e-18 Score=104.48 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=62.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhc-cCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLS-SANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~-~~~~ 77 (78)
.+|+++|++|||||||+.+|..++|. ..+.|+.+.++..+.+.+++..+.+.+||++|++ .. +...+++ ++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~--~~~~~~~~~ad~ 75 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MW--TEDSCMQYQGDA 75 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hH--HHhHHhhcCCCE
Confidence 37899999999999999999999987 7788888767878889999999999999999998 33 5566777 7775
No 113
>KOG0395|consensus
Probab=99.75 E-value=1.8e-18 Score=105.80 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=69.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|.+|||||+|+.||.++.|.+.|.||++ +.+.+.+.+++..+.|+|+||+|++.|.. ++..|++++||
T Consensus 5 kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~--~~~~~~~~~~g 77 (196)
T KOG0395|consen 5 KVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSA--MRDLYIRNGDG 77 (196)
T ss_pred EEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChH--HHHHhhccCcE
Confidence 589999999999999999999999999999997 66699999999999999999999999999 99999999886
No 114
>KOG0070|consensus
Probab=99.75 E-value=7.3e-19 Score=105.61 Aligned_cols=70 Identities=20% Similarity=0.415 Sum_probs=62.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
|+||++|..++|||+|+.++..+++... .||+|.+ ..++++ +.+++.+||..||+++++ +|++||+++++
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfn--VE~v~y--kn~~f~vWDvGGq~k~R~--lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFN--VETVEY--KNISFTVWDVGGQEKLRP--LWKHYFQNTQG 87 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccC-CCccccc--eeEEEE--cceEEEEEecCCCccccc--chhhhccCCcE
Confidence 5799999999999999999999988754 9999954 556666 588999999999999999 99999999886
No 115
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.74 E-value=8.3e-18 Score=100.19 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=65.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|++|||||||+.++..+.+...+.||....+ ...+.+++..+.+++||++|+++|+. +++.+++.+++
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~--~~~~~~~~~~~ 75 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSI--LPQKYSIGIHG 75 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHH--HHHHHHhhCCE
Confidence 689999999999999999999999888999987666 67778888889999999999999999 99999988876
No 116
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=1.5e-17 Score=98.30 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=60.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
.+++++|+.+||||||+++|..++|++.+.++. .++ .....+++..+++.+|||+|++.++. .+..+++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~ad~ 73 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRA--NLAAEIRKANV 73 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhH--HHhhhcccCCE
Confidence 478999999999999999999999987654443 344 45556778889999999999999888 88888888876
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=1.9e-17 Score=98.42 Aligned_cols=70 Identities=23% Similarity=0.437 Sum_probs=58.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.++....+ ..+.||++.. ...+.++ .+.+.+||++|+++++. +++.+|+++|++
T Consensus 16 kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~--~~~~~~~~~d~~ 85 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRP--YWRNYFESTDAL 85 (173)
T ss_pred EEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHH--HHHHHhCCCCEE
Confidence 589999999999999999997755 4678998844 4455564 57889999999999999 999999999864
No 118
>KOG0073|consensus
Probab=99.71 E-value=1.9e-17 Score=98.35 Aligned_cols=70 Identities=27% Similarity=0.504 Sum_probs=61.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
|+|+++|..++|||+|+++|.... ++...||.| |..+++.+ +.+.+++||..||..+++ +|++||.++||
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~--~~~~L~iwDvGGq~~lr~--~W~nYfestdg 86 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEY--KGYTLNIWDVGGQKTLRS--YWKNYFESTDG 86 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEe--cceEEEEEEcCCcchhHH--HHHHhhhccCe
Confidence 679999999999999999998665 567889999 44566666 788999999999999999 99999999987
No 119
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.71 E-value=4.5e-17 Score=94.59 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=65.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+...+.|+.. +...+.+.+++..+.+++||++|++.+.. +++.+++++++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~~~~~~~~~~~ 73 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSA--MRDLYIRQGDG 73 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHH--HHHHHHhcCCE
Confidence 589999999999999999999889989999987 44567777888889999999999999999 99999998875
No 120
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=7.9e-17 Score=92.30 Aligned_cols=75 Identities=15% Similarity=0.298 Sum_probs=66.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
.+++++|.+|+|||||++++....++..+.++.+.++....+.+++..+.+.+||++|++++.. +++.+++.+++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--~~~~~~~~~~~ 76 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA--IRRLYYRAVES 76 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH--HHHHHHhhhhE
Confidence 4789999999999999999999888888889998888776678888789999999999999999 99888887654
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.71 E-value=1.5e-17 Score=97.40 Aligned_cols=70 Identities=21% Similarity=0.388 Sum_probs=58.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||+|+.++..+.+. .+.||++.++. .+.. ..+.+++||++|+++|+. +++.++++++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~i 70 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRP--YWRCYYSNTDAI 70 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHH--HHHHHhcCCCEE
Confidence 5899999999999999999988876 46788886653 3333 567899999999999999 999999998863
No 122
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.70 E-value=5.2e-17 Score=93.74 Aligned_cols=69 Identities=22% Similarity=0.402 Sum_probs=60.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++|++|||||||++++...+|..++.||++.++. .+..+ .+.+.+||++|+++++. ++..+++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~--~~~~~~~~~d~ 70 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRS--MWERYCRGVNA 70 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHH--HHHHHHhcCCE
Confidence 689999999999999999999999999999987763 33443 37899999999999999 99999999886
No 123
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.70 E-value=6.5e-17 Score=94.48 Aligned_cols=70 Identities=23% Similarity=0.478 Sum_probs=58.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|+++||||||+++|..+++.. +.||++.++ ..+.. +..+.+.+||++|++++.. +++.+++++|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~--~~~~~~~~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRT--VWKCYLENTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHH--HHHHHhccCCE
Confidence 58999999999999999999998874 578888654 33444 3468899999999999999 99999999886
No 124
>KOG0071|consensus
Probab=99.68 E-value=8e-17 Score=94.05 Aligned_cols=70 Identities=23% Similarity=0.440 Sum_probs=62.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
|+|+.+|..++|||+|+.+++-++.. ...||+| |..+++++ +.+++++||..||++.++ +|++||.++.|
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVty--kN~kfNvwdvGGqd~iRp--lWrhYy~gtqg 87 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRP--LWRHYYTGTQG 87 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEe--eeeEEeeeeccCchhhhH--HHHhhccCCce
Confidence 78999999999999999999987754 5789999 55677777 888999999999999999 99999998765
No 125
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=8.5e-17 Score=95.90 Aligned_cols=70 Identities=19% Similarity=0.432 Sum_probs=59.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||+.++..+++.. +.||++.++. .+.+ ..+.+.+||++|+++++. +++.+|+++|++
T Consensus 17 kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~--~~~~~~~~~d~v 86 (174)
T cd04153 17 KVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRS--SWNTYYTNTDAV 86 (174)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHH--HHHHHhhcCCEE
Confidence 58999999999999999999998875 6889887653 3344 357899999999999999 999999998863
No 126
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.67 E-value=3.7e-17 Score=99.00 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=61.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCCCCC------------CCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFTRQY------------YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~~~~------------~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~ 67 (78)
+|+++|+.+||||||+.++.. +.|...+ .++.+.++..+...++.+.+.+.+|||+|+++|.. +
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~ 81 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG--E 81 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH--H
Confidence 478999999999999999997 6676554 34456666566666666788999999999999999 9
Q ss_pred hHhhhccCccC
Q psy2599 68 VKTYLSSANIS 78 (78)
Q Consensus 68 ~~~~~~~~~~~ 78 (78)
+..+++++|++
T Consensus 82 ~~~~~~~~d~~ 92 (194)
T cd01891 82 VERVLSMVDGV 92 (194)
T ss_pred HHHHHHhcCEE
Confidence 99999999874
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.67 E-value=1.5e-16 Score=93.46 Aligned_cols=70 Identities=20% Similarity=0.378 Sum_probs=57.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhC------CCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD------EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSA 75 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~------~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~ 75 (78)
+|+++|++|||||||+.++... .+.+.+.||++.++. .+.++ ...+.+||++|++++.. ++..+++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~--~~~~~~~~~ 74 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRS--LWDKYYAEC 74 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHH--HHHHHhCCC
Confidence 5789999999999999999753 234567888887763 34554 57889999999999999 999999998
Q ss_pred cc
Q psy2599 76 NI 77 (78)
Q Consensus 76 ~~ 77 (78)
++
T Consensus 75 ~~ 76 (167)
T cd04160 75 HA 76 (167)
T ss_pred CE
Confidence 86
No 128
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.67 E-value=9.1e-17 Score=93.75 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=55.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHh---CCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ---DEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~---~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
|-++++|+++||||||++++.+ +.++.++.++...+.....+.+.+ ...+.+|||+|+++|.. ....+++++|+
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~--~~~~~~~~ad~ 77 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIK--NMLAGAGGIDL 77 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHH--HHHhhhhcCCE
Confidence 6789999999999999999985 445544444444444334455542 45789999999999977 67778888876
Q ss_pred C
Q psy2599 78 S 78 (78)
Q Consensus 78 ~ 78 (78)
+
T Consensus 78 i 78 (164)
T cd04171 78 V 78 (164)
T ss_pred E
Confidence 3
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.65 E-value=2.7e-16 Score=93.41 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=58.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhC-------CCCCCCCCCC------CceeEEEEEEE-----CCEEEEEEEecCCCCCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD-------EFTRQYYPTS------GPDFHLKLLTI-----QNRGVKLILWDIGGKANES 63 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~-------~~~~~~~~t~------~~~~~~~~i~~-----~~~~~~l~iwD~~G~~~~~ 63 (78)
+|.++|+.+||||||+.+|+.. .+...+.++. |.++..+.+.+ +++.+.+.+|||+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 4789999999999999999873 2333454543 44554444333 6778999999999999999
Q ss_pred CcCchHhhhccCccC
Q psy2599 64 SAGLVKTYLSSANIS 78 (78)
Q Consensus 64 ~~~~~~~~~~~~~~~ 78 (78)
. ++..+++++|++
T Consensus 82 ~--~~~~~~~~ad~~ 94 (179)
T cd01890 82 Y--EVSRSLAACEGA 94 (179)
T ss_pred H--HHHHHHHhcCeE
Confidence 9 999999999874
No 130
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.65 E-value=4.1e-16 Score=91.01 Aligned_cols=69 Identities=22% Similarity=0.360 Sum_probs=58.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|+++||||||+++++++.+ ..+.||++.+. ..+.++ .+.+.+||++|++++.. +++.+++++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~--~~~~~~~~~~~ 69 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRP--LWKHYYENTNG 69 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHH--HHHHHhccCCE
Confidence 589999999999999999998884 46788888654 334443 57899999999999999 99999999876
No 131
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.64 E-value=1e-16 Score=96.15 Aligned_cols=69 Identities=25% Similarity=0.477 Sum_probs=59.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|..++||||+++++..+.+. .+.||.|.+ ...+.++ .+.+.+||.+|++.+++ +|+.||++++|
T Consensus 16 ~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~--~~~i~~~--~~~~~~~d~gG~~~~~~--~w~~y~~~~~~ 84 (175)
T PF00025_consen 16 KILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN--IEEIKYK--GYSLTIWDLGGQESFRP--LWKSYFQNADG 84 (175)
T ss_dssp EEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE--EEEEEET--TEEEEEEEESSSGGGGG--GGGGGHTTESE
T ss_pred EEEEECCCccchHHHHHHhhhcccc-ccCcccccc--cceeeeC--cEEEEEEeccccccccc--cceeeccccce
Confidence 5899999999999999999987665 488999854 4556664 46678999999999999 99999999886
No 132
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.64 E-value=7.4e-16 Score=86.46 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=56.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC--CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT--RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
||+|+|+.|||||||+++++.+.+. ..+.++.+.++.............+.+||++|++.+.. .++..+.++|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--~~~~~~~~~d~ 76 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS--QHQFFLKKADA 76 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC--TSHHHHHHSCE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc--cccchhhcCcE
Confidence 5899999999999999999998876 23444455556555667777777799999999999888 77777888776
No 133
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.63 E-value=6.8e-16 Score=92.91 Aligned_cols=70 Identities=24% Similarity=0.397 Sum_probs=57.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||++++..+.+. .+.||.+... ..+.++ .+++.+||++|+++++. +++.||+++++.
T Consensus 19 ~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~--~~~~~~~~ad~i 88 (184)
T smart00178 19 KILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARR--LWKDYFPEVNGI 88 (184)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEEC--CEEEEEEECCCCHHHHH--HHHHHhCCCCEE
Confidence 6899999999999999999988775 4677776543 334443 47889999999999999 999999999863
No 134
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.62 E-value=8.9e-16 Score=92.18 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=58.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|+++||||||++++..+++. .+.||.+.. ...+.+++ +.+.+||++|+++++. ++..+++++++
T Consensus 21 ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~--~~~~~~~~ad~ 89 (190)
T cd00879 21 KILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARR--LWKDYFPEVDG 89 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHH--HHHHHhccCCE
Confidence 5899999999999999999988875 688888754 34556654 6788999999999998 99999999876
No 135
>KOG0075|consensus
Probab=99.59 E-value=1.8e-16 Score=93.15 Aligned_cols=71 Identities=18% Similarity=0.426 Sum_probs=63.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
|.+.++|...+|||+|.+....++|.+...||+|.+. . ++....+.+.+||.+||++|++ +|+.|||++++
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--r--k~tkgnvtiklwD~gGq~rfrs--mWerycR~v~a 91 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--R--KVTKGNVTIKLWDLGGQPRFRS--MWERYCRGVSA 91 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhccccccee--E--EeccCceEEEEEecCCCccHHH--HHHHHhhcCcE
Confidence 6789999999999999999999999999999999654 3 4566788899999999999999 99999999875
No 136
>KOG4423|consensus
Probab=99.58 E-value=1.6e-18 Score=104.95 Aligned_cols=75 Identities=32% Similarity=0.531 Sum_probs=67.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCE-EEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNR-GVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~-~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++|+|+.|||||++++||....|...|..|+|.+|-.+...-+.+ .+++++||.+||++|.. |.+.||+.+++|
T Consensus 27 k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~--mtrVyykea~~~ 102 (229)
T KOG4423|consen 27 KVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGN--MTRVYYKEAHGA 102 (229)
T ss_pred hhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcc--eEEEEecCCcce
Confidence 4789999999999999999999999999999999997666665554 67899999999999999 999999999886
No 137
>KOG0096|consensus
Probab=99.57 E-value=2.3e-15 Score=91.31 Aligned_cols=75 Identities=20% Similarity=0.380 Sum_probs=64.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++||.|.|||++..|+..++|...|.||+|.+.+.-...-+...+++..|||+|||++.. ++.-||-++.||
T Consensus 12 klvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg--lrdgyyI~~qcA 86 (216)
T KOG0096|consen 12 KLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG--LRDGYYIQGQCA 86 (216)
T ss_pred EEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecc--cccccEEeccee
Confidence 368899999999999999999999999999999887433333333469999999999999999 999999888776
No 138
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.57 E-value=3.9e-15 Score=91.19 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=55.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccC-cc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSA-NI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~-~~ 77 (78)
+++++|+++||||+|+.++..+++...+.++ ..+.....+...++...+.+||++|+++++. .+..+|+++ ++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~--~~~~~~~~~~~~ 75 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRD--KLLETLKNSAKG 75 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHH--HHHHHHhccCCE
Confidence 4799999999999999999999887655443 3333221222224567899999999999999 899999987 65
No 139
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.54 E-value=1.9e-14 Score=85.04 Aligned_cols=69 Identities=20% Similarity=0.430 Sum_probs=56.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|++|||||||++++.+..+. .+.||.+.++ ..+..++ ..+.+||++|+.++.. ++..+++++++
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~--~~~~~~~~~~~ 84 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRP--YWRNYFENTDC 84 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHH--HHHHHhcCCCE
Confidence 5899999999999999999987765 4678888544 4455544 6789999999999988 99999998875
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.54 E-value=7.7e-15 Score=86.07 Aligned_cols=73 Identities=7% Similarity=-0.008 Sum_probs=55.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC-CEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++|+.++|||||++++..+++...+.++...++....+..+ .....+.+|||+|++.|.. ++..+++.+|+
T Consensus 3 i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~--~~~~~~~~~d~ 76 (168)
T cd01887 3 VTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN--MRARGASLTDI 76 (168)
T ss_pred EEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH--HHHHHHhhcCE
Confidence 6889999999999999999988876544444333333333333 2467889999999999998 99988888875
No 141
>KOG1673|consensus
Probab=99.54 E-value=1.3e-15 Score=90.35 Aligned_cols=73 Identities=19% Similarity=0.396 Sum_probs=67.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSAN 76 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~ 76 (78)
+|-++||+.+|||||+-.|.++++.+++..+.|.+|..+++.+.+..+.+.|||..|+++|.. +.|.-++++-
T Consensus 22 kv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n--~lPiac~dsv 94 (205)
T KOG1673|consen 22 KVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN--MLPIACKDSV 94 (205)
T ss_pred EEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhc--cCceeecCcE
Confidence 466899999999999999999999999999999999999999999999999999999999999 8887776653
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.51 E-value=1.9e-14 Score=87.24 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=49.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCC-----------CCccCCcCchHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG-----------KANESSAGLVKT 70 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G-----------~~~~~~~~~~~~ 70 (78)
+|+++|+++||||||++++.+..+...+.|+. ++....+.++ .+.+|||+| +++++. +++.
T Consensus 11 ~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~--~~~~ 82 (201)
T PRK04213 11 EIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD--EIVR 82 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHH--HHHH
Confidence 58999999999999999999888776666644 3433333333 589999999 677888 8888
Q ss_pred hhc
Q psy2599 71 YLS 73 (78)
Q Consensus 71 ~~~ 73 (78)
|++
T Consensus 83 ~~~ 85 (201)
T PRK04213 83 YIE 85 (201)
T ss_pred HHH
Confidence 876
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.49 E-value=1.3e-13 Score=80.00 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=52.0
Q ss_pred eEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCc------hHhhhc--cCc
Q psy2599 5 YIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL------VKTYLS--SAN 76 (78)
Q Consensus 5 ~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~------~~~~~~--~~~ 76 (78)
++|+.+||||||++++.+..+...+.|....++....+.+++ ..+.+|||+|++.+.. + ++.+++ ++|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSP--YSEDEKVARDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCC--CChhHHHHHHHhcCCCCc
Confidence 589999999999999998776555556555666566677765 4689999999988775 4 566665 555
Q ss_pred c
Q psy2599 77 I 77 (78)
Q Consensus 77 ~ 77 (78)
+
T Consensus 77 ~ 77 (158)
T cd01879 77 L 77 (158)
T ss_pred E
Confidence 4
No 144
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.45 E-value=1.5e-13 Score=82.71 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=50.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC----------CccCCcCchHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK----------ANESSAGLVKT 70 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~----------~~~~~~~~~~~ 70 (78)
++++++|++|+|||||++++..+++...+.++.+.......... ...+.||||+|. +++.. +...
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~--~~~~ 99 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQK--LIEE 99 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHH--HHHH
Confidence 35899999999999999999988776677777765442222222 367899999994 34444 5556
Q ss_pred hhccC
Q psy2599 71 YLSSA 75 (78)
Q Consensus 71 ~~~~~ 75 (78)
|++.+
T Consensus 100 ~~~~~ 104 (196)
T PRK00454 100 YLRTR 104 (196)
T ss_pred HHHhC
Confidence 66654
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.44 E-value=3.7e-14 Score=81.64 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=44.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC-----ccCCcCchHhhhccCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA-----NESSAGLVKTYLSSAN 76 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~-----~~~~~~~~~~~~~~~~ 76 (78)
+++++|+++||||||+++|.++.+ .+.+|++.++. . .+|||+|+. .|+. +.+ .|+++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~--~~~-~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSA--LIV-TAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchhhhhhHHHHHH--HHH-HhhcCC
Confidence 689999999999999999998876 35667654442 1 589999982 3444 544 478887
Q ss_pred cC
Q psy2599 77 IS 78 (78)
Q Consensus 77 ~~ 78 (78)
++
T Consensus 65 ~v 66 (142)
T TIGR02528 65 VI 66 (142)
T ss_pred EE
Confidence 64
No 146
>KOG0074|consensus
Probab=99.43 E-value=3.5e-13 Score=79.02 Aligned_cols=71 Identities=23% Similarity=0.452 Sum_probs=60.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++++++|....|||+|++++.... +....||-| |..+.+.++ ..+.|.+||..||...+. +|.+||.+.|+
T Consensus 18 irilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRp--yWsNYyenvd~ 88 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRP--YWSNYYENVDG 88 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEeec-CcEEEEEEecCCccccch--hhhhhhhccce
Confidence 468999999999999999998543 556788988 556777664 358899999999999999 99999999885
No 147
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.43 E-value=2.7e-13 Score=94.04 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=58.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhC-------CCCCCCCCC------CCceeEEEEEEE-----CCEEEEEEEecCCCCCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD-------EFTRQYYPT------SGPDFHLKLLTI-----QNRGVKLILWDIGGKANES 63 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~-------~~~~~~~~t------~~~~~~~~~i~~-----~~~~~~l~iwD~~G~~~~~ 63 (78)
+++++|..++|||||+.++... .+...+..+ .|.++..+.+.+ +++.+.+.+|||+|+++|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 3789999999999999999864 233334333 366665554443 5677999999999999999
Q ss_pred CcCchHhhhccCccC
Q psy2599 64 SAGLVKTYLSSANIS 78 (78)
Q Consensus 64 ~~~~~~~~~~~~~~~ 78 (78)
. .+..+++.||+|
T Consensus 85 ~--~v~~~l~~aD~a 97 (595)
T TIGR01393 85 Y--EVSRSLAACEGA 97 (595)
T ss_pred H--HHHHHHHhCCEE
Confidence 9 999999999875
No 148
>PTZ00099 rab6; Provisional
Probab=99.43 E-value=3.1e-13 Score=81.28 Aligned_cols=55 Identities=33% Similarity=0.566 Sum_probs=50.8
Q ss_pred hCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 22 QDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 22 ~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+.|+++|.||+|.++..+.+.+++..+.+.||||+|+++|+. +++.||++||++
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~--~~~~~~~~ad~~ 56 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRS--LIPSYIRDSAAA 56 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhh--ccHHHhCCCcEE
Confidence 3578889999999999888899999999999999999999999 999999999874
No 149
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.40 E-value=1.1e-12 Score=74.01 Aligned_cols=70 Identities=27% Similarity=0.413 Sum_probs=59.3
Q ss_pred eEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 5 YIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 5 ~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|..++|||||++++..... ...+.+|. .++.............+.+||++|+..+.. .+..+++.+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~~~~~~~~~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRS--LRRLYYRGADG 71 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHh--HHHHHhcCCCE
Confidence 589999999999999998877 66677777 777777777777889999999999998888 77888887765
No 150
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.37 E-value=1.3e-12 Score=90.49 Aligned_cols=74 Identities=7% Similarity=0.025 Sum_probs=57.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.++++|..++|||||+.++...++...+.+.+..+.....+.+++.. .+.+|||+|+++|.. ++..+++.+|++
T Consensus 89 ~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~--~r~rga~~aDia 162 (587)
T TIGR00487 89 VVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTS--MRARGAKVTDIV 162 (587)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhh--HHHhhhccCCEE
Confidence 37889999999999999999988876655555444444455554332 678999999999999 999888888764
No 151
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.37 E-value=1e-12 Score=78.67 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=40.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
+++++|++++|||||++++....+...+.++.+.......+..++ .+.+|||+|.
T Consensus 20 ~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~ 74 (179)
T TIGR03598 20 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGY 74 (179)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCC
Confidence 589999999999999999998876555666666544333333443 5889999995
No 152
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.35 E-value=3.1e-12 Score=81.78 Aligned_cols=60 Identities=13% Similarity=0.049 Sum_probs=47.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCC----------CCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQ----------YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~----------~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+|+++|++|+|||||++++....+... +.+|+..+.....+..++..+++.+|||+|-..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence 689999999999999999998876433 455666666566667778889999999999543
No 153
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.33 E-value=2.6e-12 Score=78.95 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=52.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCC-----------C------CCCCCceeEEEEEEE-----CCEEEEEEEecCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQ-----------Y------YPTSGPDFHLKLLTI-----QNRGVKLILWDIGGK 59 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~-----------~------~~t~~~~~~~~~i~~-----~~~~~~l~iwD~~G~ 59 (78)
+++++|..++|||||+.+++...+... + ....+..+....+.+ +++.+.+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 478999999999999999987543321 1 111222222222222 356789999999999
Q ss_pred CccCCcCchHhhhccCccC
Q psy2599 60 ANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~ 78 (78)
++|.. ....+++.+|++
T Consensus 82 ~~f~~--~~~~~~~~aD~~ 98 (213)
T cd04167 82 VNFMD--EVAAALRLSDGV 98 (213)
T ss_pred cchHH--HHHHHHHhCCEE
Confidence 99988 888888888864
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.32 E-value=9.2e-12 Score=83.99 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCC--CCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCch--------Hh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDE--FTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLV--------KT 70 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~--------~~ 70 (78)
++++++|+++||||||++++.... +...+ |....++....+.+++.. +.+|||+|+.++.. .. ..
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~--~ie~~gi~~~~~ 278 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNGIL--IKLLDTAGIREHAD--FVERLGIEKSFK 278 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECCEE--EEEeeCCCcccchh--HHHHHHHHHHHH
Confidence 368999999999999999999764 34444 333466767777786654 58999999977654 32 35
Q ss_pred hhccCcc
Q psy2599 71 YLSSANI 77 (78)
Q Consensus 71 ~~~~~~~ 77 (78)
+++++|+
T Consensus 279 ~~~~aD~ 285 (442)
T TIGR00450 279 AIKQADL 285 (442)
T ss_pred HHhhCCE
Confidence 6777775
No 155
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.32 E-value=2.6e-12 Score=76.30 Aligned_cols=72 Identities=14% Similarity=-0.030 Sum_probs=52.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCC----------------CceeEEEEEEECCEEEEEEEecCCCCCccCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTS----------------GPDFHLKLLTIQNRGVKLILWDIGGKANESSA 65 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~----------------~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~ 65 (78)
+|+++|+.++|||||++.+........+.++. ..+.....+.. ....+.+|||+|+.++..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~- 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSS- 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHH-
Confidence 47899999999999999999887765432221 11111222222 356789999999999988
Q ss_pred CchHhhhccCcc
Q psy2599 66 GLVKTYLSSANI 77 (78)
Q Consensus 66 ~~~~~~~~~~~~ 77 (78)
.+..+++.+|+
T Consensus 78 -~~~~~~~~~d~ 88 (189)
T cd00881 78 -EVIRGLSVSDG 88 (189)
T ss_pred -HHHHHHHhcCE
Confidence 88999988876
No 156
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.32 E-value=7.7e-12 Score=73.44 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=38.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCC--CCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYP--TSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~--t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+++++|+++||||||++++..+.+.....| |.. .....+ ....+.+.+|||+|+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--~~~~~~--~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS--LFVGHF--DYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc--eeEEEE--ccCceEEEEEECCCcCC
Confidence 578999999999999999998877533221 222 212222 22457899999999853
No 157
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.31 E-value=3.2e-12 Score=88.54 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=59.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHh---CCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ---DEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~---~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
|.|.++|..++|||||++++.+ +.+++++.+++..++....+.+++ ..+.+||++|+++|.. ....++.++|+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~--~~~~g~~~aD~ 76 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFIS--NAIAGGGGIDA 76 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHH--HHHhhhccCCE
Confidence 4678999999999999999985 556666777776676666666665 7789999999999988 77778888876
Q ss_pred C
Q psy2599 78 S 78 (78)
Q Consensus 78 ~ 78 (78)
+
T Consensus 77 a 77 (581)
T TIGR00475 77 A 77 (581)
T ss_pred E
Confidence 4
No 158
>PRK10218 GTP-binding protein; Provisional
Probab=99.30 E-value=6.7e-12 Score=87.31 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=61.7
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCCCCC------------CCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFTRQY------------YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~~~~------------~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~ 67 (78)
+|+++|..++|||||+.++.. +.|...+ ..+.+..+..+...+..+.+++.+|||+|+.+|.. .
T Consensus 7 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~--~ 84 (607)
T PRK10218 7 NIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG--E 84 (607)
T ss_pred EEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH--H
Confidence 488999999999999999996 5554332 34567777677677777788999999999999999 9
Q ss_pred hHhhhccCccC
Q psy2599 68 VKTYLSSANIS 78 (78)
Q Consensus 68 ~~~~~~~~~~~ 78 (78)
+..+++.+|++
T Consensus 85 v~~~l~~aDg~ 95 (607)
T PRK10218 85 VERVMSMVDSV 95 (607)
T ss_pred HHHHHHhCCEE
Confidence 99999999875
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.28 E-value=3.5e-12 Score=77.06 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=41.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC----CCCCCC-----CCCCCceeEEEEEE----------ECCEEEEEEEecCCCCCc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD----EFTRQY-----YPTSGPDFHLKLLT----------IQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~----~~~~~~-----~~t~~~~~~~~~i~----------~~~~~~~l~iwD~~G~~~ 61 (78)
++|+++|+.++|||||+.+++.. .+...+ ..|+...+....+. ..++...+.+|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47899999999999999999962 222221 24444444333332 123467899999999864
Q ss_pred c
Q psy2599 62 E 62 (78)
Q Consensus 62 ~ 62 (78)
+
T Consensus 81 ~ 81 (192)
T cd01889 81 L 81 (192)
T ss_pred H
Confidence 3
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.27 E-value=7.3e-12 Score=84.86 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=44.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
++++++|.++||||||++++.+.++ .....|....++....+.+++..+ .+|||+|..
T Consensus 212 ~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~ 270 (472)
T PRK03003 212 RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLR 270 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCcc
Confidence 3689999999999999999998765 233445555666667777877655 689999963
No 161
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.27 E-value=1.7e-11 Score=71.96 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=42.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCC-CC-CCCCCceeEEEEEEECCEEEEEEEecCCCCC----ccCCcCchHhhhcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTR-QY-YPTSGPDFHLKLLTIQNRGVKLILWDIGGKA----NESSAGLVKTYLSS 74 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~-~~-~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~----~~~~~~~~~~~~~~ 74 (78)
.|+++|+++||||||++++.+..... .+ .+|.... ...+.+++ ...+.+|||+|+. .++. +...+++.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~--~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~--~~~~~~~~ 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN--LGVVRVDD-GRSFVVADIPGLIEGASEGKG--LGHRFLRH 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc--ceEEEcCC-CCeEEEEecCcccCcccccCC--chHHHHHH
Confidence 57899999999999999998654321 11 1222211 11223333 2578999999963 3445 66666664
No 162
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.27 E-value=6e-12 Score=76.46 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=39.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCC--CCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQ--YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
+++++|++|||||||++++....+... +.+|.. .....+.+++. ..+.+|||+|..
T Consensus 43 ~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt~G~~ 100 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDTVGFI 100 (204)
T ss_pred eEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCCCccc
Confidence 589999999999999999998764322 344443 33344445443 368899999973
No 163
>KOG0072|consensus
Probab=99.27 E-value=3.9e-13 Score=78.95 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=60.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
|+++++|..|.|||+++.|..-++-. ...||+|.+. .++.+ ++.++++||..||...++ +|+.||.++++
T Consensus 19 ~rililgldGaGkttIlyrlqvgevv-ttkPtigfnv--e~v~y--KNLk~~vwdLggqtSirP--yWRcYy~dt~a 88 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNV--ETVPY--KNLKFQVWDLGGQTSIRP--YWRCYYADTDA 88 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCc--ccccc--ccccceeeEccCcccccH--HHHHHhcccce
Confidence 78999999999999999999877765 4689998554 44444 888999999999999999 99999999875
No 164
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.25 E-value=1.7e-11 Score=81.91 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=49.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc--------cCCcCchHhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN--------ESSAGLVKTY 71 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~--------~~~~~~~~~~ 71 (78)
+|+++|.++||||||++++..... ..+ .|.+..+.....+.+++ ..+.+|||+|++. ++. ....+
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~--~~~~~ 77 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIRE--QAELA 77 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHH--HHHHH
Confidence 588999999999999999997763 333 33333455455666655 6789999999987 223 34456
Q ss_pred hccCcc
Q psy2599 72 LSSANI 77 (78)
Q Consensus 72 ~~~~~~ 77 (78)
++.+|+
T Consensus 78 ~~~ad~ 83 (435)
T PRK00093 78 IEEADV 83 (435)
T ss_pred HHhCCE
Confidence 666665
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.25 E-value=1.6e-11 Score=83.21 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=50.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc--------cCCcCchHhhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN--------ESSAGLVKTYL 72 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~--------~~~~~~~~~~~ 72 (78)
+|++||.++||||||++++....+. ....|.+..+.....+.+++. .+.+|||+|.+. +.. .+..++
T Consensus 40 ~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~--~~~~~~ 115 (472)
T PRK03003 40 VVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAE--QAEVAM 115 (472)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHH--HHHHHH
Confidence 4889999999999999999987642 233444444444455556554 478899999873 333 456677
Q ss_pred ccCcc
Q psy2599 73 SSANI 77 (78)
Q Consensus 73 ~~~~~ 77 (78)
+.||+
T Consensus 116 ~~aD~ 120 (472)
T PRK03003 116 RTADA 120 (472)
T ss_pred HhCCE
Confidence 77775
No 166
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.25 E-value=1.1e-11 Score=71.95 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=41.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
|+++|++|+|||||++.+.++.+.....++.+.......+..++ .+.+||++|.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~ 55 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGY 55 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCc
Confidence 78999999999999999997777666777776655444444433 7899999984
No 167
>PRK15494 era GTPase Era; Provisional
Probab=99.24 E-value=3.3e-11 Score=78.91 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=41.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC---CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC-ccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT---RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA-NESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~---~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~-~~~~ 64 (78)
+++++|+++||||||++++.+..+. +.+.+|. ++....+..++. .+.+|||+|+. .+..
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~~~~--qi~~~DTpG~~~~~~~ 116 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR--SIITGIITLKDT--QVILYDTPGIFEPKGS 116 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc--CcEEEEEEeCCe--EEEEEECCCcCCCccc
Confidence 5799999999999999999988764 2333443 233445556554 56899999984 3444
No 168
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.24 E-value=2.9e-11 Score=86.10 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=54.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
|+++|..++|||||+.++....+.....+.+..+.....+.+++ ..+.||||+|++.|.. ++...++.+|++
T Consensus 293 V~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~--m~~rga~~aDia 364 (787)
T PRK05306 293 VTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTA--MRARGAQVTDIV 364 (787)
T ss_pred EEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchh--HHHhhhhhCCEE
Confidence 78899999999999999998777655444333333334455554 4678999999999999 999888888764
No 169
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.23 E-value=8e-11 Score=67.89 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=43.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
++++++|++|+|||||++++....+. ....|....++....+..+ ...+.+|||+|...+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~ 64 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETED 64 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcc
Confidence 47899999999999999999977642 1223333344544445554 35678999999877643
No 170
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.23 E-value=1.5e-11 Score=87.06 Aligned_cols=74 Identities=9% Similarity=0.097 Sum_probs=56.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCce--eEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPD--FHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~--~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
|+++|..++|||||+.++....+.....+.+..+ .+...+..++....+.+|||+|++.|.. ++..+++.+|++
T Consensus 247 V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~--mr~rg~~~aDia 322 (742)
T CHL00189 247 VTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSS--MRSRGANVTDIA 322 (742)
T ss_pred EEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHH--HHHHHHHHCCEE
Confidence 7889999999999999999887765444333222 2233344445678899999999999999 999999988864
No 171
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.20 E-value=4.3e-11 Score=69.12 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=39.6
Q ss_pred eeEcCCCCCHHHHHHHHHhCC--CCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 4 LYIKVLTEGTSCFSTRYTQDE--FTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 4 v~vG~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
+++|++|||||||++++.... +...+.++. .+........++ ..+.+|||+|...+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~~~i~DtpG~~~~~ 59 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVT-RDRIYGEAEWGG--REFILIDTGGIEPDD 59 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCce-eCceeEEEEECC--eEEEEEECCCCCCch
Confidence 479999999999999999764 333333332 333344444544 578999999998753
No 172
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.19 E-value=1.1e-10 Score=78.85 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=44.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+++++|.++||||||++++..... ...+ |....++....+.+++. .+.+|||+|.+++..
T Consensus 217 kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 217 KVVIAGRPNVGKSSLLNALLGEERAIVTDI-AGTTRDVIEEHINLDGI--PLRLIDTAGIRETDD 278 (449)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcccccEEEEEEECCe--EEEEEeCCCCCCCcc
Confidence 589999999999999999998653 3333 33335665667777654 568999999987654
No 173
>KOG3883|consensus
Probab=99.19 E-value=7.6e-11 Score=70.06 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=59.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEEC-CEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
|++|++|-.+||||+|+.++..++- ..++.||+. |.+...++-+ +-.-.|.++||+|...+..+ +.++||+-+||
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~e-Lprhy~q~aDa 87 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQE-LPRHYFQFADA 87 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhh-hhHhHhccCce
Confidence 5799999999999999999986553 355889994 5657777654 34567999999999888332 89999988875
No 174
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.16 E-value=4.3e-11 Score=83.12 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=52.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCC----CCCCCCceeEEEEEE------------ECCEEEEEEEecCCCCCccCCcC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQ----YYPTSGPDFHLKLLT------------IQNRGVKLILWDIGGKANESSAG 66 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~----~~~t~~~~~~~~~i~------------~~~~~~~l~iwD~~G~~~~~~~~ 66 (78)
++++|..++|||||+.++....+... +.+++|..+...... ++.+...+.+|||+|++.|..
T Consensus 7 V~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~-- 84 (590)
T TIGR00491 7 VSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN-- 84 (590)
T ss_pred EEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH--
Confidence 67899999999999999998776533 234445433211110 001112388999999999999
Q ss_pred chHhhhccCccC
Q psy2599 67 LVKTYLSSANIS 78 (78)
Q Consensus 67 ~~~~~~~~~~~~ 78 (78)
++..+++.+|++
T Consensus 85 l~~~~~~~aD~~ 96 (590)
T TIGR00491 85 LRKRGGALADLA 96 (590)
T ss_pred HHHHHHhhCCEE
Confidence 999999999874
No 175
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.15 E-value=5.4e-11 Score=82.77 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=54.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCC-----CCC------CCCCCceeEEEEEEE-----CCEEEEEEEecCCCCCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFT-----RQY------YPTSGPDFHLKLLTI-----QNRGVKLILWDIGGKANES 63 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~-----~~~------~~t~~~~~~~~~i~~-----~~~~~~l~iwD~~G~~~~~ 63 (78)
+++++|..++|||||+.++... .+. ..+ ..+.|..+....+.+ +++.+.+.+|||+|+++|.
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 3789999999999999999852 221 111 123344443333333 5668999999999999999
Q ss_pred CcCchHhhhccCccC
Q psy2599 64 SAGLVKTYLSSANIS 78 (78)
Q Consensus 64 ~~~~~~~~~~~~~~~ 78 (78)
. .+..+++.+|+|
T Consensus 89 ~--~v~~sl~~aD~a 101 (600)
T PRK05433 89 Y--EVSRSLAACEGA 101 (600)
T ss_pred H--HHHHHHHHCCEE
Confidence 8 899999999875
No 176
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.14 E-value=6.3e-11 Score=74.29 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=51.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC--------CC-----CC---CCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF--------TR-----QY---YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSA 65 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~--------~~-----~~---~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~ 65 (78)
+|.++|..++|||||+.++....- .. ++ ....+..+......+..+..++.+|||+|+.+|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~- 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA- 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH-
Confidence 478999999999999999975310 00 01 11222223333334444567889999999999988
Q ss_pred CchHhhhccCccC
Q psy2599 66 GLVKTYLSSANIS 78 (78)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (78)
.+..+++.+|+|
T Consensus 80 -~~~~~l~~aD~~ 91 (237)
T cd04168 80 -EVERSLSVLDGA 91 (237)
T ss_pred -HHHHHHHHhCeE
Confidence 888899988875
No 177
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.14 E-value=9.8e-11 Score=76.29 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=49.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC------CCCCCCCCceeEEEE---------------EEECC-EEEEEEEecCCCC-
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT------RQYYPTSGPDFHLKL---------------LTIQN-RGVKLILWDIGGK- 59 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~------~~~~~t~~~~~~~~~---------------i~~~~-~~~~l~iwD~~G~- 59 (78)
+.+||.++||||||++++++.++. ..+.|++|..+.... ...++ +.+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999999987643 233555554432110 11233 3478999999998
Q ss_pred ---CccCCcCchHhh---hccCcc
Q psy2599 60 ---ANESSAGLVKTY---LSSANI 77 (78)
Q Consensus 60 ---~~~~~~~~~~~~---~~~~~~ 77 (78)
++++. +.+.+ +|+||+
T Consensus 81 ~ga~~~~g--lg~~fL~~ir~aD~ 102 (318)
T cd01899 81 PGAHEGKG--LGNKFLDDLRDADA 102 (318)
T ss_pred CCccchhh--HHHHHHHHHHHCCE
Confidence 55666 76665 777775
No 178
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.12 E-value=1.5e-10 Score=77.17 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=46.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc--------cCCcCchHhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN--------ESSAGLVKTY 71 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~--------~~~~~~~~~~ 71 (78)
+|+++|.++||||||++++..... ...+ |.+..+.....+..++. .+.+|||+|... +.. ....+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~-~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~--~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDT-PGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIRE--QAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCC-CCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHH--HHHHH
Confidence 478999999999999999997653 2222 33333443445556554 588999999633 333 44556
Q ss_pred hccCcc
Q psy2599 72 LSSANI 77 (78)
Q Consensus 72 ~~~~~~ 77 (78)
++.+|+
T Consensus 76 ~~~ad~ 81 (429)
T TIGR03594 76 IEEADV 81 (429)
T ss_pred HhhCCE
Confidence 666664
No 179
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.12 E-value=9.8e-11 Score=77.08 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=40.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCC-C-CCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTR-Q-YYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~-~-~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
+++++|.++||||||++++.+..+.. + +-+|. ++....+.+++. ..+.+|||+|.
T Consensus 191 ~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~-~~i~l~DT~G~ 247 (351)
T TIGR03156 191 TVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPDG-GEVLLTDTVGF 247 (351)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCCC-ceEEEEecCcc
Confidence 48899999999999999999876532 2 23443 455666777432 36789999997
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.11 E-value=3.2e-10 Score=75.65 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=42.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+++++|.++||||||++++..... ...+..|. .+.....+..++. .+.+|||+|..++..
T Consensus 174 ~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt-~~~~~~~~~~~~~--~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 174 KIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTT-RDSIDIPFERNGK--KYLLIDTAGIRRKGK 235 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCeeecCCCCCce-ECcEeEEEEECCc--EEEEEECCCcccccc
Confidence 588999999999999999997653 22233232 3333445555554 678999999877654
No 181
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.10 E-value=2.9e-10 Score=69.25 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=43.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCc-eeEEEEEEEC-CEEEEEEEecCCCCCccCCcCchHhh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGP-DFHLKLLTIQ-NRGVKLILWDIGGKANESSAGLVKTY 71 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~ 71 (78)
++++++|++|+|||||++.+.+..++....++.+. +.......+. .....+.+||++|...... ....|
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~--~~~~~ 72 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAF--PPDDY 72 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccC--CHHHH
Confidence 47899999999999999999987665444443331 1100000111 1123689999999876544 44444
No 182
>KOG0076|consensus
Probab=99.08 E-value=7e-11 Score=71.14 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=56.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC-------CCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD-------EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLS 73 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~-------~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~ 73 (78)
|.++++|...+|||+|+....+. --+....||+|.+. -++.++ ...+.+||..||+..++ +|..||.
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~--~~~l~fwdlgGQe~lrS--lw~~yY~ 91 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC--NAPLSFWDLGGQESLRS--LWKKYYW 91 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec--cceeEEEEcCChHHHHH--HHHHHHH
Confidence 46899999999999999887642 12345678888654 445554 56788999999999999 9999999
Q ss_pred cCcc
Q psy2599 74 SANI 77 (78)
Q Consensus 74 ~~~~ 77 (78)
.|||
T Consensus 92 ~~H~ 95 (197)
T KOG0076|consen 92 LAHG 95 (197)
T ss_pred Hhce
Confidence 9886
No 183
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.08 E-value=2.2e-10 Score=67.39 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=34.7
Q ss_pred eEcCCCCCHHHHHHHHHhCCC-CCCCC-CCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 5 YIKVLTEGTSCFSTRYTQDEF-TRQYY-PTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 5 ~vG~~~vGKTsl~~~~~~~~~-~~~~~-~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
++|+++||||||++++....+ ..++. +|.... ...+.+++ ...+.+|||+|.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~i~DtpG~ 54 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPN--LGVVEVPD-GARIQVADIPGL 54 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCc--ceEEEcCC-CCeEEEEecccc
Confidence 589999999999999998764 22232 333322 22334431 456799999997
No 184
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.07 E-value=8.2e-10 Score=64.39 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=40.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
++++++|+.++|||||++++....+. ....|....+.....+..++.. +.+|||+|..+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~ 63 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRK 63 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccc
Confidence 46899999999999999999976532 1222322233333445555544 679999997654
No 185
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.06 E-value=1.1e-09 Score=68.50 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=45.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCc--Cc---hHhhhccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSA--GL---VKTYLSSA 75 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~--~~---~~~~~~~~ 75 (78)
+++++|+++||||||++++.+... ...+..|. .+.....+.+++ ..+++||++|+.+.... ++ ...+++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 578999999999999999997653 22233222 223233445544 57889999998543310 01 23467777
Q ss_pred cc
Q psy2599 76 NI 77 (78)
Q Consensus 76 ~~ 77 (78)
|+
T Consensus 79 d~ 80 (233)
T cd01896 79 DL 80 (233)
T ss_pred CE
Confidence 64
No 186
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.06 E-value=3.1e-10 Score=72.31 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=50.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCCC---------------CCCC---CCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFTR---------------QYYP---TSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~~---------------~~~~---t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+|.++|..++|||||+.++... .... ++.+ ..+..+......+..+.+++.+|||+|+++
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 3789999999999999998742 1110 0000 012223333344555678899999999999
Q ss_pred cCCcCchHhhhccCccC
Q psy2599 62 ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (78)
|.. ....+++.+|++
T Consensus 84 f~~--~~~~~l~~aD~~ 98 (267)
T cd04169 84 FSE--DTYRTLTAVDSA 98 (267)
T ss_pred HHH--HHHHHHHHCCEE
Confidence 987 777788888864
No 187
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.04 E-value=6.9e-10 Score=64.42 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=39.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
+++++|.++||||||++++...+... ...+.+.+.....+.+++ .+.||||+|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 46899999999999999999877642 223334444455566655 5799999984
No 188
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.04 E-value=2.4e-10 Score=69.16 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=54.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC--------CCCC----CCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCch
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF--------TRQY----YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLV 68 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~--------~~~~----~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~ 68 (78)
++|+++|+.++|||+++.+.++... ...+ ..|+..||... .+ .....+.++||+||+||+- ||
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~--~~-~~~~~v~LfgtPGq~RF~f--m~ 85 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI--EL-DEDTGVHLFGTPGQERFKF--MW 85 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce--EE-cCcceEEEecCCCcHHHHH--HH
Confidence 4699999999999999999997653 1111 23445555322 22 2235678999999999999 99
Q ss_pred HhhhccCccC
Q psy2599 69 KTYLSSANIS 78 (78)
Q Consensus 69 ~~~~~~~~~~ 78 (78)
..+.+++.||
T Consensus 86 ~~l~~ga~ga 95 (187)
T COG2229 86 EILSRGAVGA 95 (187)
T ss_pred HHHhCCcceE
Confidence 9999998875
No 189
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.04 E-value=1.1e-09 Score=76.26 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=44.3
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 7 KVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 7 G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
|+++||||||++++.+..+...+.|....+.....+.+++. ++++|||+|+.++..
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~ 56 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTT 56 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCc
Confidence 89999999999999988765555666666666666667654 468999999998876
No 190
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.01 E-value=3.1e-10 Score=79.00 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=56.0
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCCCCC------------CCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFTRQY------------YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~~~~------------~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~ 67 (78)
+|+++|..++|||||+.++.. +.|.... ....|..+..+...+..+.+++.||||+|+++|.. .
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~--e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGG--E 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHH--H
Confidence 378999999999999999985 4444322 12234445455444545668889999999999998 8
Q ss_pred hHhhhccCccC
Q psy2599 68 VKTYLSSANIS 78 (78)
Q Consensus 68 ~~~~~~~~~~~ 78 (78)
+..+++.+|+|
T Consensus 81 v~~~l~~aD~a 91 (594)
T TIGR01394 81 VERVLGMVDGV 91 (594)
T ss_pred HHHHHHhCCEE
Confidence 88999998875
No 191
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.01 E-value=1.2e-09 Score=63.02 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=38.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+|+++|..|+|||||++++.................... .......+.+.+|||+|......
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~ 66 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKK 66 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchH
Confidence 588999999999999999987654311111111111111 12333457789999999876543
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.00 E-value=1.7e-09 Score=61.63 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=37.9
Q ss_pred eEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 5 YIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 5 ~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
++|..|+|||||++++....+. ....+....+........+ ....+.+||++|...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCcccc
Confidence 5899999999999999976543 2222222122222222221 156789999999888765
No 193
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.99 E-value=2e-09 Score=63.12 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=38.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G 58 (78)
+++++|.++||||++++++.... ...+.++.+.....+.+..++ .+.+|||+|
T Consensus 103 ~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 103 KVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 57899999999999999999654 335667777554333233333 589999998
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.99 E-value=7.2e-10 Score=78.37 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=42.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
++++++|.++||||||++++.+.++ ..++.+|. .+.....+.+++..+ .+|||+|..
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT-~d~~~~~~~~~~~~~--~liDTaG~~ 509 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT-RDPVDEIVEIDGEDW--LFIDTAGIK 509 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC-cCcceeEEEECCCEE--EEEECCCcc
Confidence 3689999999999999999998764 34444443 455455667777654 589999964
No 195
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.99 E-value=6.1e-10 Score=78.86 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=55.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhC---------------CCCCC---CCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD---------------EFTRQ---YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~---------------~~~~~---~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
+|+++|..++|||||+.++... .+.++ +..|+...+....+.+++..+.+.+|||+|+.+|.
T Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~ 100 (720)
T TIGR00490 21 NIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFG 100 (720)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccH
Confidence 4889999999999999999742 22211 23455444433344567778899999999999998
Q ss_pred CcCchHhhhccCccC
Q psy2599 64 SAGLVKTYLSSANIS 78 (78)
Q Consensus 64 ~~~~~~~~~~~~~~~ 78 (78)
. .....++.+|+|
T Consensus 101 ~--~~~~al~~aD~~ 113 (720)
T TIGR00490 101 G--DVTRAMRAVDGA 113 (720)
T ss_pred H--HHHHHHHhcCEE
Confidence 8 788889988875
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.98 E-value=8.9e-10 Score=77.91 Aligned_cols=72 Identities=17% Similarity=0.059 Sum_probs=45.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc--------CCcCchHhhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE--------SSAGLVKTYL 72 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~--------~~~~~~~~~~ 72 (78)
+|+++|.++||||||++++++..+. ....|.+..+........++ ..+.+|||+|.+.. .. ....++
T Consensus 277 ~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~--~~~~~~ 352 (712)
T PRK09518 277 VVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIAS--QAQIAV 352 (712)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHH--HHHHHH
Confidence 4889999999999999999976542 11233333333233333433 45788999998742 22 334556
Q ss_pred ccCcc
Q psy2599 73 SSANI 77 (78)
Q Consensus 73 ~~~~~ 77 (78)
+.+|+
T Consensus 353 ~~aD~ 357 (712)
T PRK09518 353 SLADA 357 (712)
T ss_pred HhCCE
Confidence 66665
No 197
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.97 E-value=9.2e-10 Score=76.56 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=49.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCC----CCCCCCceeEEEEEE--ECCEEE----------EEEEecCCCCCccCCcC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQ----YYPTSGPDFHLKLLT--IQNRGV----------KLILWDIGGKANESSAG 66 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~----~~~t~~~~~~~~~i~--~~~~~~----------~l~iwD~~G~~~~~~~~ 66 (78)
+.++|..++|||||+.++........ +.+++|..+...... ..+..+ .+.+|||+|++.|..
T Consensus 9 V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~-- 86 (586)
T PRK04004 9 VVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN-- 86 (586)
T ss_pred EEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH--
Confidence 67899999999999999986544322 223455433211100 011111 268999999999999
Q ss_pred chHhhhccCccC
Q psy2599 67 LVKTYLSSANIS 78 (78)
Q Consensus 67 ~~~~~~~~~~~~ 78 (78)
++...++.+|++
T Consensus 87 ~~~~~~~~aD~~ 98 (586)
T PRK04004 87 LRKRGGALADIA 98 (586)
T ss_pred HHHHhHhhCCEE
Confidence 999888888764
No 198
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.96 E-value=4.4e-10 Score=62.86 Aligned_cols=63 Identities=19% Similarity=0.127 Sum_probs=40.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCC-CCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYY-PTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
++++++|+.|||||+|+.||.++.|..++. +|++...+... ....-..-+.+||..-.+.+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~s~~~~~~v~~~~~~~s~~~ 64 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIGIDVYDPT-SYESFDVVLQCWRVDDRDSADN 64 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhhhhhcccc-ccCCCCEEEEEEEccCHHHHHH
Confidence 478999999999999999999998877666 77662221111 1112223344588765554443
No 199
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.95 E-value=2.2e-09 Score=68.25 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=38.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC--CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT--RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
+|+++|.++||||||++++.+..+. .....|... . .+.+...+ ...+.+|||+|....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~-i~~i~~~~-~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-R-ISGIHTTG-ASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-c-EEEEEEcC-CcEEEEEECcCCCCC
Confidence 4789999999999999999987653 222333322 2 22332222 245889999997543
No 200
>PRK11058 GTPase HflX; Provisional
Probab=98.94 E-value=2.6e-09 Score=71.96 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=39.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
.++++|.++||||||++++.+..+.....|....+.....+.+++. -.+.+|||+|..+
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r 257 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIR 257 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccc
Confidence 4789999999999999999976643222222223444555666542 1457999999844
No 201
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.92 E-value=1e-09 Score=69.59 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=46.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC--CC------------------CCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT--RQ------------------YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~--~~------------------~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+|+++|.+|+|||||+.++....-. .. ..+++ ......+.. +...+.+|||+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti--~~~~~~~~~--~~~~i~liDtPG~~~ 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSI--STSVAPLEW--KGHKINLIDTPGYAD 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccc--cceeEEEEE--CCEEEEEEECcCHHH
Confidence 4789999999999999998743211 00 01111 111222233 346788999999998
Q ss_pred cCCcCchHhhhccCccC
Q psy2599 62 ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (78)
|.. .+...++.+|++
T Consensus 77 f~~--~~~~~l~~aD~~ 91 (268)
T cd04170 77 FVG--ETRAALRAADAA 91 (268)
T ss_pred HHH--HHHHHHHHCCEE
Confidence 877 777888887764
No 202
>PRK13351 elongation factor G; Reviewed
Probab=98.91 E-value=9e-10 Score=77.55 Aligned_cols=71 Identities=11% Similarity=0.012 Sum_probs=50.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC-------------CCC-------CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE-------------FTR-------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~-------------~~~-------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+|+++|..++|||||+.++.... +.. ++.+|+.... . .+..+...+.+|||+|+.+
T Consensus 10 ni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~--~--~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 10 NIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA--T--SCDWDNHRINLIDTPGHID 85 (687)
T ss_pred EEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce--E--EEEECCEEEEEEECCCcHH
Confidence 48899999999999999997421 111 1233443222 1 2223467889999999999
Q ss_pred cCCcCchHhhhccCccC
Q psy2599 62 ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (78)
|.. .+..+++.+|++
T Consensus 86 f~~--~~~~~l~~aD~~ 100 (687)
T PRK13351 86 FTG--EVERSLRVLDGA 100 (687)
T ss_pred HHH--HHHHHHHhCCEE
Confidence 998 889999998874
No 203
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.89 E-value=1.2e-08 Score=57.05 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=38.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+|+++|.+++|||||++.+.+... .....++. .......+.+++..+ .++||+|-..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T-~~~~~~~~~~~~~~~--~~vDtpG~~~ 59 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTT-RDPVYGQFEYNNKKF--ILVDTPGIND 59 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSS-SSEEEEEEEETTEEE--EEEESSSCSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccce-eeeeeeeeeeceeeE--EEEeCCCCcc
Confidence 578999999999999999997532 22222222 222234556666666 5999999654
No 204
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.88 E-value=3.1e-09 Score=66.24 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=50.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC--CCCC----------------CCCCCCceeEEEEEEEC--------CEEEEEEEec
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE--FTRQ----------------YYPTSGPDFHLKLLTIQ--------NRGVKLILWD 55 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~--~~~~----------------~~~t~~~~~~~~~i~~~--------~~~~~l~iwD 55 (78)
++.++|..+.|||+|+.++.... .... .-.|+... ...+.+. ++.+.+.+||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~--~~~~~~~~~~~~~~~~~~~~i~iiD 79 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSS--AISLYFEYEEEDKADGNEYLINLID 79 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccc--eEEEEEecCcccccCCCceEEEEEC
Confidence 47899999999999999997432 1100 00111111 1112222 4578999999
Q ss_pred CCCCCccCCcCchHhhhccCccC
Q psy2599 56 IGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 56 ~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
|+|+++|.. ....+++.+|+|
T Consensus 80 TPG~~~f~~--~~~~~l~~aD~~ 100 (222)
T cd01885 80 SPGHVDFSS--EVTAALRLCDGA 100 (222)
T ss_pred CCCccccHH--HHHHHHHhcCee
Confidence 999999999 899999999885
No 205
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.87 E-value=1.1e-08 Score=68.39 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=48.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCC-CC-----CCCCCceeEEEEE---------------EECC-EEEEEEEecCCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTR-QY-----YPTSGPDFHLKLL---------------TIQN-RGVKLILWDIGG 58 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~-~~-----~~t~~~~~~~~~i---------------~~~~-~~~~l~iwD~~G 58 (78)
|++.+||.++||||||++++.+.++.. +| .|++|..+....+ ..++ ..+.+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 678999999999999999999876642 33 3444432210000 0112 247799999999
Q ss_pred C----CccCCcCchHhh---hccCcc
Q psy2599 59 K----ANESSAGLVKTY---LSSANI 77 (78)
Q Consensus 59 ~----~~~~~~~~~~~~---~~~~~~ 77 (78)
. ++.+. +...+ +|+||+
T Consensus 82 l~~ga~~g~g--lg~~fL~~ir~ad~ 105 (396)
T PRK09602 82 LVPGAHEGRG--LGNQFLDDLRQADA 105 (396)
T ss_pred cCCCccchhh--HHHHHHHHHHHCCE
Confidence 4 44555 76677 667665
No 206
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.86 E-value=2.1e-09 Score=72.16 Aligned_cols=74 Identities=12% Similarity=0.035 Sum_probs=48.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCCCCceeEEEEEEECCEEE
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ--DEFTR-----------------------------QYYPTSGPDFHLKLLTIQNRGV 49 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~i~~~~~~~ 49 (78)
++++++|..++|||||+.+++. +.... +....+..+..... +....+
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~~~~~~ 85 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--FETDKY 85 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--EccCCe
Confidence 3589999999999999999975 22221 11222333333333 334567
Q ss_pred EEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 50 KLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 50 ~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+.|||++|+++|.. .....++.+|+|
T Consensus 86 ~i~iiDtpGh~~f~~--~~~~~~~~aD~~ 112 (426)
T TIGR00483 86 EVTIVDCPGHRDFIK--NMITGASQADAA 112 (426)
T ss_pred EEEEEECCCHHHHHH--HHHhhhhhCCEE
Confidence 889999999998866 555566777764
No 207
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.85 E-value=8.6e-09 Score=61.52 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=38.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
+++++|.++||||||++++....+. ...+..+.......+.++ ..+.+|||+|-
T Consensus 117 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 117 RAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4789999999999999999987764 223333444444445554 35789999984
No 208
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.84 E-value=2.9e-09 Score=66.87 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=42.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCC---CCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCc---CchHhhhccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQY---YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSA---GLVKTYLSSA 75 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~---~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~---~~~~~~~~~~ 75 (78)
|||++|.+++||||+......+-.+.+. .||+..+. ..+. ....+.+++||++||..+-.. -.+...|+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~--~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEK--SHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEE--EEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceE--EEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 5899999999999998888766544332 35654332 2222 234568899999999876330 0345566655
Q ss_pred c
Q psy2599 76 N 76 (78)
Q Consensus 76 ~ 76 (78)
.
T Consensus 78 ~ 78 (232)
T PF04670_consen 78 G 78 (232)
T ss_dssp S
T ss_pred C
Confidence 4
No 209
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.84 E-value=3e-09 Score=73.23 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=50.7
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCC---------------CC---CCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFT---------------RQ---YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~---------------~~---~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
++.++|..++|||||+.++.. +... .+ .....+..+....+.+..+.+++.+|||+|+++
T Consensus 12 ni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~d 91 (526)
T PRK00741 12 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHED 91 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchh
Confidence 478999999999999999963 1110 00 011123333333334444567889999999999
Q ss_pred cCCcCchHhhhccCccC
Q psy2599 62 ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (78)
|.. ....+++.+|+|
T Consensus 92 f~~--~~~~~l~~aD~a 106 (526)
T PRK00741 92 FSE--DTYRTLTAVDSA 106 (526)
T ss_pred hHH--HHHHHHHHCCEE
Confidence 988 777888888875
No 210
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.82 E-value=1.8e-08 Score=72.01 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=44.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+++++|.++||||||++++.+.+.. .-...|..+..+...+.....++++||++|...+..
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCcccccc
Confidence 5899999999999999999876542 222345555455545555667889999999987753
No 211
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.81 E-value=7.3e-09 Score=71.39 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=51.8
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCCC------------------CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFTR------------------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
++.++|..++|||||+.++.. +.... ......+..+....+.++.+.+.+.+|||+|+.+
T Consensus 13 niaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~d 92 (527)
T TIGR00503 13 TFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHED 92 (527)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhh
Confidence 478999999999999999852 21110 0111233444444445556678899999999999
Q ss_pred cCCcCchHhhhccCccC
Q psy2599 62 ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (78)
|.. ....+++.+|+|
T Consensus 93 f~~--~~~~~l~~aD~a 107 (527)
T TIGR00503 93 FSE--DTYRTLTAVDNC 107 (527)
T ss_pred HHH--HHHHHHHhCCEE
Confidence 887 677788888864
No 212
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.78 E-value=2.3e-09 Score=63.39 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=30.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
+|+++|.++||||||++++.+ .+.. ..++.+. .++.. .+|||+|+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~-~~~~-~~~~~~v-------~~~~~----~~iDtpG~~ 48 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQG-NYTL-ARKTQAV-------EFNDK----GDIDTPGEY 48 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcC-CCcc-CccceEE-------EECCC----CcccCCccc
Confidence 488999999999999999664 3321 1233322 22222 269999973
No 213
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.78 E-value=1.1e-08 Score=68.70 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=46.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC--CCC-----------------------------CCCCCCCCceeEEEEEEECCEEE
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD--EFT-----------------------------RQYYPTSGPDFHLKLLTIQNRGV 49 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~--~~~-----------------------------~~~~~t~~~~~~~~~i~~~~~~~ 49 (78)
++++++|..++|||||+.++... ... ++..+-+..+. ....+..+..
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~--~~~~~~~~~~ 84 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDL--AHKKFETDKY 84 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCcccee--eeEEEecCCe
Confidence 35899999999999999999732 111 01112111222 2223344567
Q ss_pred EEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 50 KLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 50 ~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+.+|||+|+++|.. ......+.+|+|
T Consensus 85 ~i~liDtpG~~~~~~--~~~~~~~~aD~~ 111 (425)
T PRK12317 85 YFTIVDCPGHRDFVK--NMITGASQADAA 111 (425)
T ss_pred EEEEEECCCcccchh--hHhhchhcCCEE
Confidence 889999999998865 434445666653
No 214
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.78 E-value=7.4e-09 Score=63.53 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=44.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC--CCC-----------------------------CCCCCCCceeEEEEEEECCEEEE
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE--FTR-----------------------------QYYPTSGPDFHLKLLTIQNRGVK 50 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~--~~~-----------------------------~~~~t~~~~~~~~~i~~~~~~~~ 50 (78)
+++++|..++|||||+.++.... ... +....+..+.....+.. ....
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~--~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST--PKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec--CCce
Confidence 57899999999999999986421 110 00011111111122222 3446
Q ss_pred EEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 51 LILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 51 l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+.+|||+|+++|.. .....++.+|++
T Consensus 79 ~~liDTpG~~~~~~--~~~~~~~~ad~~ 104 (208)
T cd04166 79 FIIADTPGHEQYTR--NMVTGASTADLA 104 (208)
T ss_pred EEEEECCcHHHHHH--HHHHhhhhCCEE
Confidence 78999999998866 555566777653
No 215
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.78 E-value=4e-08 Score=65.84 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=39.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCC-CCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDE-FTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
++++++|.+++|||||++++.... ......|....+.....+..++. .+.+|||+|..+..
T Consensus 174 ~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~ 235 (435)
T PRK00093 174 IKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKG 235 (435)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCc
Confidence 368999999999999999999654 22222333323333334445544 45789999976543
No 216
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.76 E-value=5.5e-08 Score=63.70 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=42.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc----cCCcCchHhhhc
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN----ESSAGLVKTYLS 73 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~----~~~~~~~~~~~~ 73 (78)
|.+||.++||||||++++...+.. .+|..|. .....-.+.+++ ...+.+||++|... ... +...|++
T Consensus 160 V~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT-~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~g--Lg~~flr 231 (329)
T TIGR02729 160 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTT-LVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAG--LGHRFLK 231 (329)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCccccCCCCCc-cCCEEEEEEeCC-ceEEEEEeCCCcccCCccccc--HHHHHHH
Confidence 789999999999999999976532 2232221 222233344443 35678999999743 224 5566655
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.76 E-value=1.4e-08 Score=71.10 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=47.6
Q ss_pred CceeEcCCCCCHHHHHHHHHh---CCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ---DEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~---~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
-|.++|..++|||||+.++.+ +.++++....+..+.....+...+ ...+.+|||+|+++|.. .....+.++|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~--~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLS--NMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHH--HHHHHhhcCCEE
Confidence 367899999999999999984 455544432222233222232322 22478999999999866 555566666653
No 218
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.75 E-value=3.7e-08 Score=62.40 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=37.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCC--CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTR--QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
++|+++|.+|||||||++.+.+..... .+.++. ..........+ ..++.+|||+|-...
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T-~~~~~~~~~~~--g~~i~vIDTPGl~~~ 92 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAATSAFQSET-LRVREVSGTVD--GFKLNIIDTPGLLES 92 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCce-EEEEEEEEEEC--CeEEEEEECCCcCcc
Confidence 468999999999999999999765321 122221 12211222233 356799999997654
No 219
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.73 E-value=4.9e-08 Score=62.76 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=37.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCC----------CCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQY----------YPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~----------~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+|+|+|++|+|||||++.+++....... .++.........+.-++..++|.++||+|-..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 6899999999999999999976543221 11222222222333467789999999999543
No 220
>PRK00089 era GTPase Era; Reviewed
Probab=98.73 E-value=6e-08 Score=62.03 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=36.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCC--CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTR--QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
|+++|.++||||||++++.+..... ....|... . ...+... ....+.+|||+|....
T Consensus 8 V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~-~-i~~i~~~-~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 8 VAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRH-R-IRGIVTE-DDAQIIFVDTPGIHKP 66 (292)
T ss_pred EEEECCCCCCHHHHHHHHhCCceeecCCCCCcccc-c-EEEEEEc-CCceEEEEECCCCCCc
Confidence 7899999999999999999776521 11222211 1 2222222 2367899999997654
No 221
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.71 E-value=5.8e-08 Score=63.27 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=37.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
++|+++|.+||||||+++++.+... ..... +.+..........+ ..++.++||+|....
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRTRA--GFTLNIIDTPGLIEG 99 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEEEC--CeEEEEEECCCCCch
Confidence 3689999999999999999997642 11121 11111111122233 467899999997754
No 222
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.67 E-value=1.2e-07 Score=56.43 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=40.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
++|.++|.++||||+|.+++.+.+..-...|-...+.....+.+++ ..+.+.|++|.-..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl 60 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSL 60 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccC
Confidence 4689999999999999999998764433345555666666777766 55678999996443
No 223
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.65 E-value=6.3e-08 Score=61.90 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=47.1
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCCC-----------CCCC---CCCceeEEEEEEECCEEEEEEEecCCCCCccCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFTR-----------QYYP---TSGPDFHLKLLTIQNRGVKLILWDIGGKANESSA 65 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~~-----------~~~~---t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~ 65 (78)
+|.++|..++|||||+.++.. +.... ++.| ..+.........+.-+...+.+|||+|..+|..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~- 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTI- 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHH-
Confidence 478999999999999999963 21100 0001 111112111122222356778899999999888
Q ss_pred CchHhhhccCccC
Q psy2599 66 GLVKTYLSSANIS 78 (78)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (78)
.+..+++.+|+|
T Consensus 80 -~~~~~l~~aD~a 91 (270)
T cd01886 80 -EVERSLRVLDGA 91 (270)
T ss_pred -HHHHHHHHcCEE
Confidence 788888888764
No 224
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.62 E-value=4.2e-08 Score=60.02 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
++.++|..|+|||+|+..+..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~ 22 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSG 22 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998863
No 225
>KOG1707|consensus
Probab=98.62 E-value=3.2e-08 Score=68.48 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=46.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSAN 76 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~ 76 (78)
+|||++||.|||||||+..+..++|+++..+.. ..+... ..+....+-..|-|++..+.-+. ....-.|.||
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IP-advtPe~vpt~ivD~ss~~~~~~--~l~~EirkA~ 81 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIP-ADVTPENVPTSIVDTSSDSDDRL--CLRKEIRKAD 81 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccC-CccccC-CccCcCcCceEEEecccccchhH--HHHHHHhhcC
Confidence 479999999999999999999999987644432 333121 12233445577888875554443 3344455544
No 226
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.57 E-value=2.7e-07 Score=54.23 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=33.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G 58 (78)
+++++|.++||||||++.+....... ..++.|.......+.+++ .+.+.||+|
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 36789999999999999998754321 122233322222333322 267899998
No 227
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.56 E-value=2.7e-07 Score=59.02 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=37.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
+++++|.++||||||++++........ .+..|.......+.++. .+.++||+|-
T Consensus 120 ~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 120 RAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 478999999999999999997653221 22233333344455543 3689999997
No 228
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.53 E-value=3.7e-07 Score=61.70 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=41.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC-CCCC-CCCCceeEEEEEEECCEEEEEEEecCCCCCc----cCCcCchHhhhcc
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT-RQYY-PTSGPDFHLKLLTIQNRGVKLILWDIGGKAN----ESSAGLVKTYLSS 74 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~-~~~~-~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~----~~~~~~~~~~~~~ 74 (78)
|.+||.++||||||+++++..+.. .+|. +|....+ -.+.++ ....+.+||++|... ... +...|++.
T Consensus 161 VglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~Pnl--G~v~~~-~~~~~~laD~PGliega~~~~g--Lg~~fLrh 233 (424)
T PRK12297 161 VGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNL--GVVETD-DGRSFVMADIPGLIEGASEGVG--LGHQFLRH 233 (424)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEE--EEEEEe-CCceEEEEECCCCcccccccch--HHHHHHHH
Confidence 789999999999999999975521 1222 2322222 223332 135688999999632 333 55666553
No 229
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.53 E-value=4.1e-07 Score=62.55 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=36.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC-CCCC-CCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT-RQYY-PTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~-~~~~-~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
|++||.+++|||||+++++..+.. .+|. +|+. ...-.+.+++ ..+.+||++|.
T Consensus 162 V~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~--P~lGvv~~~~--~~f~laDtPGl 216 (500)
T PRK12296 162 VGLVGFPSAGKSSLISALSAAKPKIADYPFTTLV--PNLGVVQAGD--TRFTVADVPGL 216 (500)
T ss_pred EEEEEcCCCCHHHHHHHHhcCCccccccCccccc--ceEEEEEECC--eEEEEEECCCC
Confidence 789999999999999999975432 2232 3332 2233444544 56899999995
No 230
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.53 E-value=4.4e-07 Score=59.68 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=40.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC-CCCC-CCCCceeEEEEEEECCEEEEEEEecCCCCCc----cCCcCchHhhhc
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT-RQYY-PTSGPDFHLKLLTIQNRGVKLILWDIGGKAN----ESSAGLVKTYLS 73 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~-~~~~-~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~----~~~~~~~~~~~~ 73 (78)
|.+||.+++|||||++++...+.. ..|. +|.... .-.+.+. ....+.+||++|.-. ... +...+++
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~--~G~v~~~-~~~~~~i~D~PGli~ga~~~~g--Lg~~flr 232 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPN--LGVVRVD-DYKSFVIADIPGLIEGASEGAG--LGHRFLK 232 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCce--EEEEEeC-CCcEEEEEeCCCccCCCCcccc--HHHHHHH
Confidence 789999999999999999975422 2222 233222 2233342 234578999998732 233 5555554
No 231
>KOG0077|consensus
Probab=98.52 E-value=4.4e-08 Score=58.89 Aligned_cols=69 Identities=22% Similarity=0.407 Sum_probs=56.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|++|..+.|||+|++.+.+++.. ++.||.-.. ...+.+ ..+++.-+|..|+..-+. .|+.||..+|+
T Consensus 22 KllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPT--SE~l~I--g~m~ftt~DLGGH~qArr--~wkdyf~~v~~ 90 (193)
T KOG0077|consen 22 KLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELSI--GGMTFTTFDLGGHLQARR--VWKDYFPQVDA 90 (193)
T ss_pred eEEEEeecCCchhhHHHHHcccccc-ccCCCcCCC--hHHhee--cCceEEEEccccHHHHHH--HHHHHHhhhce
Confidence 5789999999999999999988765 577776543 334455 556778899999999999 99999998876
No 232
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.51 E-value=2.4e-07 Score=56.22 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=38.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCC-CCCCC---CCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDE-FTRQY---YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~-~~~~~---~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
++|+++|.+||||||+++.+...+ +.... ..|..+. .....+++. .+.+.||+|-...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~--~~~~~~~~~--~i~viDTPG~~d~ 62 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQ--KESAVWDGR--RVNVIDTPGLFDT 62 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccc--eeeEEECCe--EEEEEECcCCCCc
Confidence 478999999999999999999764 33221 2232222 222334444 5788999996554
No 233
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.51 E-value=3.7e-07 Score=55.13 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=33.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCC-------CCCCCCCceeEEEEEEECCEEEEEEEecCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTR-------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~-------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G 58 (78)
.++++|.++||||||++.+....... ...+..|.......+.++. .+.++||+|
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 47899999999999999999754211 0011112222233333433 468999998
No 234
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.51 E-value=1.4e-07 Score=58.35 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=42.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCCC------------------------CCC---CCCCceeEEEEEEECCEEEEEE
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFTR------------------------QYY---PTSGPDFHLKLLTIQNRGVKLI 52 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~~------------------------~~~---~t~~~~~~~~~i~~~~~~~~l~ 52 (78)
++.++|..++|||+|+.++... .... ++. ...|.........+.-+..++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4789999999999999988531 1100 000 0011111111122223456789
Q ss_pred EecCCCCCccCCcCchHhhhccCcc
Q psy2599 53 LWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 53 iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|||+|+.+|.. ......+.+|+
T Consensus 81 liDtpG~~~~~~--~~~~~~~~~d~ 103 (219)
T cd01883 81 ILDAPGHRDFVP--NMITGASQADV 103 (219)
T ss_pred EEECCChHHHHH--HHHHHhhhCCE
Confidence 999999987765 44444555654
No 235
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.50 E-value=6.7e-08 Score=62.04 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=37.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEE-EECCEEEEEEEecCCCCCc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLL-TIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i-~~~~~~~~l~iwD~~G~~~ 61 (78)
|.+++.|-.|+||||+++.+.++...+--..-++.+...... .+++ -.+.|||++|-+.
T Consensus 40 vnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gd 99 (296)
T COG3596 40 VNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGD 99 (296)
T ss_pred eeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCccc
Confidence 457899999999999999999765543221122222211111 2333 5678999999766
No 236
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.50 E-value=5.2e-07 Score=54.30 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=35.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCEEEEEEEecCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G 58 (78)
+++++|.++||||||++++...+- ... +..|.......+.++. .+.++||+|
T Consensus 119 ~~~~vG~pnvGKSslin~l~~~~~~~~~--~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 119 TVGVVGFPNVGKSSLINSLKRSRACNVG--ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcccceec--CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 578999999999999999997543 222 2234333344444443 478999998
No 237
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.49 E-value=6.5e-07 Score=57.57 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=37.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
+++++|.++||||||++.+...+... ..+..|.......+.++. .+.++||+|--
T Consensus 123 ~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 123 RAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 47899999999999999999765421 123334444344444443 36799999974
No 238
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.49 E-value=2.3e-08 Score=60.73 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=36.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEE-CCEEEEEEEecCCCCCccCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTI-QNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwD~~G~~~~~~ 64 (78)
++++|++|+|||+|..++..+++.+ ..+++..+. ...+ +...-.+.+.|++|+++.+.
T Consensus 6 vlL~Gps~SGKTaLf~~L~~~~~~~-T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~ 64 (181)
T PF09439_consen 6 VLLVGPSGSGKTALFSQLVNGKTVP-TVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRS 64 (181)
T ss_dssp EEEE-STTSSHHHHHHHHHHSS----B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCH
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcCC-eeccccCCc---eEEeecCCCCEEEEEECCCcHHHHH
Confidence 7899999999999999999986653 233332211 1222 22344678999999999876
No 239
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.48 E-value=1.3e-07 Score=63.13 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=39.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC----------------CCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD----------------EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~----------------~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+++.++|..++|||+|+.++... ..+++... |.......+.+......+.+|||+|+++|..
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--G~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~ 90 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKAR--GITINTAHVEYETENRHYAHVDCPGHADYVK 90 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhc--CcceeeEEEEEcCCCEEEEEEECCchHHHHH
Confidence 35889999999999999999632 01111111 2222233344555556788999999998754
No 240
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.45 E-value=1e-06 Score=59.76 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=43.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
++++++|.++||||||++-+.+..- ..+..=|. -|+-...+.++| +.+.+.||||-..-..
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTT-RDviee~i~i~G--~pv~l~DTAGiRet~d 280 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTT-RDVIEEDINLNG--IPVRLVDTAGIRETDD 280 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCc-cceEEEEEEECC--EEEEEEecCCcccCcc
Confidence 5799999999999999999997643 22222232 455566666744 5567899999765443
No 241
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.45 E-value=3.5e-07 Score=64.78 Aligned_cols=73 Identities=10% Similarity=-0.012 Sum_probs=48.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCC--CCC--------------CCCCCceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFT--RQY--------------YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~--~~~--------------~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
+|.++|..++|||||+.++... ... ... ..-+..+.....+.. +...+.+|||+|+.+|.
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 12 NIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTPGHVDFT 89 (689)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECCCCcchh
Confidence 4889999999999999999631 110 000 011111222223333 35678999999999998
Q ss_pred CcCchHhhhccCccC
Q psy2599 64 SAGLVKTYLSSANIS 78 (78)
Q Consensus 64 ~~~~~~~~~~~~~~~ 78 (78)
. .+..+++.+|+|
T Consensus 90 ~--~~~~~l~~~D~~ 102 (689)
T TIGR00484 90 V--EVERSLRVLDGA 102 (689)
T ss_pred H--HHHHHHHHhCEE
Confidence 8 788888888874
No 242
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.43 E-value=7.9e-08 Score=64.37 Aligned_cols=75 Identities=7% Similarity=-0.077 Sum_probs=44.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC---CCC--CCCCCceeE----------------EEEEEECC------EEEEEEEe
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT---RQY--YPTSGPDFH----------------LKLLTIQN------RGVKLILW 54 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~---~~~--~~t~~~~~~----------------~~~i~~~~------~~~~l~iw 54 (78)
+|+++|..++|||||+..+...... ++. --|+...|. ......++ ....+.+|
T Consensus 6 ~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 85 (406)
T TIGR03680 6 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFV 85 (406)
T ss_pred EEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEE
Confidence 5899999999999999888642111 110 011111110 00000111 14678999
Q ss_pred cCCCCCccCCcCchHhhhccCccC
Q psy2599 55 DIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 55 D~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
|++|+++|.. .+......+|+|
T Consensus 86 DtPGh~~f~~--~~~~g~~~aD~a 107 (406)
T TIGR03680 86 DAPGHETLMA--TMLSGAALMDGA 107 (406)
T ss_pred ECCCHHHHHH--HHHHHHHHCCEE
Confidence 9999999877 565555556653
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=98.41 E-value=3e-07 Score=62.91 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=43.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhC------CCCCCC--------CCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD------EFTRQY--------YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~------~~~~~~--------~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~ 67 (78)
+++++|..++|||+|+.++... ...+.+ ....|.........+..+...+.++|++|+++|-. -
T Consensus 83 ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~--~ 160 (478)
T PLN03126 83 NIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK--N 160 (478)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHH--H
Confidence 5789999999999999999851 111111 11122222222222333445678999999998855 3
Q ss_pred hHhhhccCcc
Q psy2599 68 VKTYLSSANI 77 (78)
Q Consensus 68 ~~~~~~~~~~ 77 (78)
.-.-...+|+
T Consensus 161 ~~~g~~~aD~ 170 (478)
T PLN03126 161 MITGAAQMDG 170 (478)
T ss_pred HHHHHhhCCE
Confidence 3333344444
No 244
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.41 E-value=3.2e-07 Score=56.60 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=34.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCC-CCCCC---CCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDE-FTRQY---YPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~-~~~~~---~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
++||++|..|+||||+.+.+.... |.... ..|.. +......+++.. +.++||+|-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~--~~~~~~~~~g~~--v~VIDTPGl 59 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQE--CQKYSGEVDGRQ--VTVIDTPGL 59 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS---EEEEEEETTEE--EEEEE--SS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccc--cceeeeeecceE--EEEEeCCCC
Confidence 379999999999999999999655 44321 22332 323334666655 468999994
No 245
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.39 E-value=5.4e-08 Score=58.71 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=47.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC--CC------------------CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF--TR------------------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~--~~------------------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+|.++|..++|||+|+.++....- .. +..-|+. .....+..+.....+.+.||+|+.+
T Consensus 5 ~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~--~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 5 NIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITID--LSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSS--SEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccc--cccccccccccccceeecccccccc
Confidence 478999999999999999984321 11 0122222 2222222124566788999999999
Q ss_pred cCCcCchHhhhccCccC
Q psy2599 62 ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (78)
|.. ....-.+.+|+|
T Consensus 83 f~~--~~~~~~~~~D~a 97 (188)
T PF00009_consen 83 FIK--EMIRGLRQADIA 97 (188)
T ss_dssp HHH--HHHHHHTTSSEE
T ss_pred eee--cccceecccccc
Confidence 877 666666777654
No 246
>PRK12735 elongation factor Tu; Reviewed
Probab=98.38 E-value=3.7e-07 Score=60.98 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=38.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhC-------CCC-----C--CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD-------EFT-----R--QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~-------~~~-----~--~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
++.++|..++|||||+.++... ++. + ...-..|.........+......+.++||+|+++|..
T Consensus 14 ~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (396)
T PRK12735 14 NVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK 90 (396)
T ss_pred EEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence 5889999999999999999851 110 0 0001122222222233433445678999999987754
No 247
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.37 E-value=4.4e-07 Score=55.52 Aligned_cols=75 Identities=11% Similarity=-0.012 Sum_probs=44.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC--------CC---C---CCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF--------TR---Q---YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAG 66 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~--------~~---~---~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~ 66 (78)
+++.++|-.++|||+|+.++....- .. + ..-..|.......+.+..+...+.+.||+|..+|..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~-- 80 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK-- 80 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH--
Confidence 4688999999999999999975310 00 0 000122223233333444455678899999988755
Q ss_pred chHhhhccCcc
Q psy2599 67 LVKTYLSSANI 77 (78)
Q Consensus 67 ~~~~~~~~~~~ 77 (78)
-...-.+.+|+
T Consensus 81 ~~~~~~~~~D~ 91 (195)
T cd01884 81 NMITGAAQMDG 91 (195)
T ss_pred HHHHHhhhCCE
Confidence 44444455554
No 248
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.35 E-value=4.7e-07 Score=60.73 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=19.7
Q ss_pred CCceeEcCCCCCHHHHHHHHH
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~ 21 (78)
|+++++|..++|||||+.++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll 21 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLL 21 (406)
T ss_pred CeEEEECCCCCCchhhhHHHH
Confidence 689999999999999999986
No 249
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.34 E-value=1.6e-06 Score=54.13 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=23.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTR 27 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~ 27 (78)
+++++|+.++|||||+.+|..+.|.+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~ 26 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN 26 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 57899999999999999999877753
No 250
>PRK12736 elongation factor Tu; Reviewed
Probab=98.33 E-value=5.3e-07 Score=60.25 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=39.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTR--------------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~--------------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
++++++|..++|||||+.++....-.. ...-..|.......+.+......+.++||+|+++|..
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHH
Confidence 358899999999999999987521000 0001122222223334444455678999999988754
No 251
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.32 E-value=2.4e-07 Score=62.21 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=19.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++++|..++|||||+..+..
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~ 31 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTG 31 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhC
Confidence 3589999999999999988854
No 252
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.29 E-value=2.1e-06 Score=56.20 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=39.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
++.+||-++|||||+++++.+..- .....| |..-..+.+.++.. +.++||+|-
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence 478999999999999999997654 222233 55555556666555 789999994
No 253
>PTZ00258 GTP-binding protein; Provisional
Probab=98.26 E-value=2.9e-06 Score=56.93 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=37.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCE---------------EEEEEEecCCCCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNR---------------GVKLILWDIGGKA 60 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~---------------~~~l~iwD~~G~~ 60 (78)
|++.+||.++||||||++.+....-. .+|..| ..+...-.+.+.+. ...+++.|++|--
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pft-Ti~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQVPAENFPFC-TIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCcccccCCCCC-cccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 57899999999999999999765432 223222 22222223333322 2348999999954
No 254
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.21 E-value=2e-06 Score=51.45 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=20.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
++++|.+|||||||++.+....
T Consensus 38 ~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 38 SVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6889999999999999999763
No 255
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.20 E-value=5.5e-06 Score=55.01 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=42.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCC----------CCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQ----------YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~----------~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
.++++|++|.|||+|++.++....... ..|++........+.=++-.++|.+.||+|-..+
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred EEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 478999999999999999987633222 2355544444444434566888999999996554
No 256
>PRK12288 GTPase RsgA; Reviewed
Probab=98.18 E-value=3.5e-06 Score=55.72 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=34.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC-CCCCCC---CC--ceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT-RQYYPT---SG--PDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t---~~--~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
++++|.+|||||||++.+....-. ....+. .| .......+.+++. ..|.||+|-..|.-
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~l 272 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFGL 272 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcccC
Confidence 578999999999999999965322 111111 01 0111222344322 24889999777643
No 257
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.16 E-value=8.7e-06 Score=54.22 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=37.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEE---------------EEEEEecCCCCCc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRG---------------VKLILWDIGGKAN 61 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~---------------~~l~iwD~~G~~~ 61 (78)
|++.+||.++||||||.+.+....-. .+|..|. .+...-.+.+.+.. ..+++.|++|--+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftT-i~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~ 78 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCT-IEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVK 78 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccccccc-ccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCC
Confidence 57899999999999999999976532 2222221 22222233333321 3589999999543
No 258
>PRK12289 GTPase RsgA; Reviewed
Probab=98.15 E-value=6.5e-06 Score=54.57 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=34.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCC-CCCCC---CC--ceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTR-QYYPT---SG--PDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~-~~~~t---~~--~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
++++|.+|||||||++.+..+.-.. ...+. -| .......+.+.+.. .+.||+|-..+.
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~ 238 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD 238 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence 5889999999999999999653221 11111 00 01123334443322 588999976543
No 259
>KOG1191|consensus
Probab=98.15 E-value=4.1e-06 Score=57.44 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=38.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
.|+++|.++||||||++.+..+... -...|-..-|--...+++ +.+.+.+.||||-.+
T Consensus 270 ~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~--~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 270 QIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV--NGVPVRLSDTAGIRE 328 (531)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec--CCeEEEEEecccccc
Confidence 5899999999999999999976542 111221112332344455 455567799999655
No 260
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.14 E-value=7.1e-06 Score=52.77 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=36.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCE---------------EEEEEEecCCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNR---------------GVKLILWDIGGKA 60 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~---------------~~~l~iwD~~G~~ 60 (78)
+.+||.++||||||.+.+..........|-...+...-.+.+.+. ...+++.|++|--
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~ 73 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLV 73 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcC
Confidence 468999999999999999976543222222222332333344332 2358999999954
No 261
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.14 E-value=1.1e-05 Score=49.83 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=35.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G 58 (78)
|+++|-++||||||++.+++.+-.-...-|-|..-...-+.++++ +.+-|.+|
T Consensus 27 IaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPG 79 (200)
T COG0218 27 IAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPG 79 (200)
T ss_pred EEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCC
Confidence 789999999999999999986532222233343222222345554 67889887
No 262
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.14 E-value=1.1e-05 Score=54.16 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=35.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC-CCCC-CCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT-RQYY-PTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~-~~~~-~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
|.+||.++||||||++.++..+.. ..|. .|....+ -.+.+++ ...+.++|++|.-+
T Consensus 162 ValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~--Giv~~~~-~~~i~~vDtPGi~~ 219 (390)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNL--GVVRVDD-ERSFVVADIPGLIE 219 (390)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEE--EEEEeCC-CcEEEEEeCCCccc
Confidence 789999999999999999965432 2222 2222222 2233332 23578999999753
No 263
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.13 E-value=3.9e-06 Score=57.40 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++++|..++|||+|+.++..
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~ 49 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLH 49 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4689999999999999999874
No 264
>CHL00071 tufA elongation factor Tu
Probab=98.13 E-value=3.6e-06 Score=56.54 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=43.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCC----------------CCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDE----------------FTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~----------------~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
|++.++|..++|||||+.+++... ..++..+ |.........+..+...+.+.||+|+++|..
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~r--g~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~ 90 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKAR--GITINTAHVEYETENRHYAHVDCPGHADYVK 90 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcC--CEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence 358899999999999999998531 1111112 2222222222333344567889999887755
Q ss_pred cCchHhhhccCcc
Q psy2599 65 AGLVKTYLSSANI 77 (78)
Q Consensus 65 ~~~~~~~~~~~~~ 77 (78)
....-.+.+|+
T Consensus 91 --~~~~~~~~~D~ 101 (409)
T CHL00071 91 --NMITGAAQMDG 101 (409)
T ss_pred --HHHHHHHhCCE
Confidence 33334445554
No 265
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.12 E-value=3.9e-06 Score=54.07 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=34.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCC-CCC---CC--ceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQY-YPT---SG--PDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~-~~t---~~--~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
++++|.+|||||||++.+......... .+. .| .......+.+.+. ..++||+|...+.
T Consensus 164 ~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 164 SVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred EEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 678999999999999999865432211 110 11 1111223333322 2589999987654
No 266
>PRK12740 elongation factor G; Reviewed
Probab=98.11 E-value=2.3e-06 Score=60.40 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=43.9
Q ss_pred EcCCCCCHHHHHHHHHhCC--CCC--C--------------CCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCc
Q psy2599 6 IKVLTEGTSCFSTRYTQDE--FTR--Q--------------YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67 (78)
Q Consensus 6 vG~~~vGKTsl~~~~~~~~--~~~--~--------------~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~ 67 (78)
||..++|||+|+.++.... ... + ....+........+.. +.+.+.+|||+|+.+|.. .
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~--~ 76 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTG--E 76 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHH--H
Confidence 6889999999999995321 100 0 0111111222223333 457789999999998877 7
Q ss_pred hHhhhccCccC
Q psy2599 68 VKTYLSSANIS 78 (78)
Q Consensus 68 ~~~~~~~~~~~ 78 (78)
+..+++.+|++
T Consensus 77 ~~~~l~~aD~v 87 (668)
T PRK12740 77 VERALRVLDGA 87 (668)
T ss_pred HHHHHHHhCeE
Confidence 78888888764
No 267
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.09 E-value=5.6e-06 Score=48.70 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=28.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEE
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLL 42 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i 42 (78)
|+++||..|+|||+|++++.+.+. .|.-|...+|....+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~~~I 41 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYDNTI 41 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecccEE
Confidence 488999999999999999998655 344444445543333
No 268
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.09 E-value=1.1e-05 Score=50.91 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=33.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCC-CCC---------CCCCceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTR-QYY---------PTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~-~~~---------~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
++++|.+|||||||++.+....-.. ... .|.. ...+.+++. .++||+|-..+.
T Consensus 123 ~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~----~~l~~l~~~----~liDtPG~~~~~ 185 (245)
T TIGR00157 123 SVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTH----VELFHFHGG----LIADTPGFNEFG 185 (245)
T ss_pred EEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCc----eEEEEcCCc----EEEeCCCccccC
Confidence 6789999999999999998653221 111 2222 223334332 689999976653
No 269
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.08 E-value=2.1e-06 Score=57.27 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=34.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCc-eeEEEEEEE-CCEEEEEEEecCCCCCccCCcCchHhhhc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGP-DFHLKLLTI-QNRGVKLILWDIGGKANESSAGLVKTYLS 73 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~-~~~~~~i~~-~~~~~~l~iwD~~G~~~~~~~~~~~~~~~ 73 (78)
+|.|+|++|+|||||++-+.+-.-. +.-.|| |. +.......+ .-+.-++.+||.+|-....- -...|+.
T Consensus 37 ~IaV~G~sGsGKSSfINalrGl~~~d~~aA~t-Gv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f--~~~~Yl~ 108 (376)
T PF05049_consen 37 NIAVTGESGSGKSSFINALRGLGHEDEGAAPT-GVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNF--PPEEYLK 108 (376)
T ss_dssp EEEEEESTTSSHHHHHHHHTT--TTSTTS--S-SSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS----HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcCcCCC-CCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC--CHHHHHH
Confidence 4889999999999999999752221 122222 21 110000111 12223578999998654333 3455554
No 270
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.07 E-value=2e-05 Score=46.27 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=32.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCEEEEEEEecCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G 58 (78)
+++++|.++||||||++.+....- .....|....+ ...+.++ ..+.+.||+|
T Consensus 102 ~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 102 TVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred EEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence 478999999999999999997542 21222211111 2223333 3478899998
No 271
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.06 E-value=3.3e-06 Score=57.41 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=48.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCC--CCC------------------------CCCC---CCCceeEEEEEEECCEEEEE
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDE--FTR------------------------QYYP---TSGPDFHLKLLTIQNRGVKL 51 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~--~~~------------------------~~~~---t~~~~~~~~~i~~~~~~~~l 51 (78)
++++++|..+.|||+|+-++.... ... +..+ ..|.........+......+
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 87 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYC 87 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEE
Confidence 358899999999999998886311 100 0000 01111112222234456678
Q ss_pred EEecCCCCCccCCcCchHhhhccCccC
Q psy2599 52 ILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 52 ~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+.|++|+++|.. .....++.+|+|
T Consensus 88 ~liDtPGh~df~~--~~~~g~~~aD~a 112 (447)
T PLN00043 88 TVIDAPGHRDFIK--NMITGTSQADCA 112 (447)
T ss_pred EEEECCCHHHHHH--HHHhhhhhccEE
Confidence 8999999999988 777778888875
No 272
>KOG2655|consensus
Probab=98.05 E-value=1.8e-05 Score=52.67 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=39.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCC---------CCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQ---------YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~---------~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
.++++|++|.|||+|++.++...+..+ ...|+.++.....+.=++-.++|.+-||+|-..
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 23 TLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred EEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 478999999999999999776544322 112333332222222356678899999998544
No 273
>PRK00049 elongation factor Tu; Reviewed
Probab=98.04 E-value=4.8e-06 Score=55.76 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=43.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC----------------CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF----------------TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~----------------~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+++.++|..++|||||+.++....- +++. ..|.......+.+..+...+.+.||+|+.+|..
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~--~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~ 90 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEK--ARGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHH--hcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHH
Confidence 3588999999999999999986210 0111 122222222333333445567889999987755
Q ss_pred cCchHhhhccCcc
Q psy2599 65 AGLVKTYLSSANI 77 (78)
Q Consensus 65 ~~~~~~~~~~~~~ 77 (78)
-...-...+|+
T Consensus 91 --~~~~~~~~aD~ 101 (396)
T PRK00049 91 --NMITGAAQMDG 101 (396)
T ss_pred --HHHhhhccCCE
Confidence 33333455554
No 274
>PRK12739 elongation factor G; Reviewed
Probab=98.04 E-value=3.4e-06 Score=59.90 Aligned_cols=73 Identities=10% Similarity=-0.012 Sum_probs=46.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCC----------------CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFT----------------RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~----------------~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
+|.++|..++|||+|+.++... ... .+....+..+.....+.. +...+.++||+|+.+|.
T Consensus 10 ni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 10 NIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPGHVDFT 87 (691)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCCHHHHH
Confidence 4789999999999999999742 110 001111222222233334 34567889999998887
Q ss_pred CcCchHhhhccCccC
Q psy2599 64 SAGLVKTYLSSANIS 78 (78)
Q Consensus 64 ~~~~~~~~~~~~~~~ 78 (78)
. .+...++.+|+|
T Consensus 88 ~--e~~~al~~~D~~ 100 (691)
T PRK12739 88 I--EVERSLRVLDGA 100 (691)
T ss_pred H--HHHHHHHHhCeE
Confidence 7 777777777764
No 275
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.03 E-value=2.7e-05 Score=55.51 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=37.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC-CCCCC-CCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE-FTRQY-YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~-~~~~~-~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
+|+++|..||||||+++.+.... |.... .+.. ..........++ ..+.++||+|-...
T Consensus 120 rIvLVGKTGVGKSSLINSILGekvf~vss~~~~T-Tr~~ei~~~idG--~~L~VIDTPGL~dt 179 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGT-TSVQEIEGLVQG--VKIRVIDTPGLKSS 179 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCCCCc-eEEEEEEEEECC--ceEEEEECCCCCcc
Confidence 58999999999999999999764 43321 1211 111111122333 56789999997654
No 276
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.00 E-value=5.9e-06 Score=58.15 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++++|..++|||||+.++..
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~ 46 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLY 46 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3589999999999999999985
No 277
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.98 E-value=2.7e-05 Score=51.22 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=36.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEE---CCEEEEEEEecCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTI---QNRGVKLILWDIGGK 59 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~---~~~~~~l~iwD~~G~ 59 (78)
+||-|.++||||||+.....-+-. ..|+.| +|.+.+ ......+|+.||+|-
T Consensus 171 ivVaG~PNVGKSSlv~~lT~AkpEvA~YPFT------TK~i~vGhfe~~~~R~QvIDTPGl 225 (346)
T COG1084 171 IVVAGYPNVGKSSLVRKLTTAKPEVAPYPFT------TKGIHVGHFERGYLRIQVIDTPGL 225 (346)
T ss_pred EEEecCCCCcHHHHHHHHhcCCCccCCCCcc------ccceeEeeeecCCceEEEecCCcc
Confidence 789999999999999999976543 223333 344443 234567899999995
No 278
>PLN03127 Elongation factor Tu; Provisional
Probab=97.96 E-value=1.8e-05 Score=53.89 Aligned_cols=62 Identities=10% Similarity=-0.018 Sum_probs=37.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC------C----------CCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD------E----------FTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~------~----------~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
++|+++|-.++|||||+.++..- . .+++..+-+..+. ..+.+......+.+.||+|+++|..
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~f~~ 139 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHADYVK 139 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccchHH
Confidence 35889999999999999998621 1 1111112222222 2233433445678889999988754
No 279
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.95 E-value=1.1e-05 Score=54.87 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=44.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHh--CCCCC------------------------CCC---CCCCceeEEEEEEECCEEEEE
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ--DEFTR------------------------QYY---PTSGPDFHLKLLTIQNRGVKL 51 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~--~~~~~------------------------~~~---~t~~~~~~~~~i~~~~~~~~l 51 (78)
++++++|..++|||+|+.++.. +.... +.. -..|.........+......+
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i 87 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYF 87 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEE
Confidence 3588999999999999998874 11110 000 001111112222234456678
Q ss_pred EEecCCCCCccCCcCchHhhhccCccC
Q psy2599 52 ILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 52 ~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.|.|++|+++|.. -...-...+|+|
T Consensus 88 ~lIDtPGh~~f~~--~~~~g~~~aD~a 112 (446)
T PTZ00141 88 TIIDAPGHRDFIK--NMITGTSQADVA 112 (446)
T ss_pred EEEECCChHHHHH--HHHHhhhhcCEE
Confidence 8999999999866 444444555543
No 280
>KOG0090|consensus
Probab=97.95 E-value=3.8e-06 Score=52.41 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=44.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLS 73 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~ 73 (78)
+++++|.+++|||+|..++..+.+.. ..+++..+ .-...+++.. +.+.|.+|+++.+. -...||+
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~-TvtSiepn--~a~~r~gs~~--~~LVD~PGH~rlR~--kl~e~~~ 104 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRG-TVTSIEPN--EATYRLGSEN--VTLVDLPGHSRLRR--KLLEYLK 104 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccC-eeeeeccc--eeeEeecCcc--eEEEeCCCcHHHHH--HHHHHcc
Confidence 47899999999999999999986553 23333222 2233343333 68899999998776 4444554
No 281
>PRK07261 topology modulation protein; Provisional
Probab=97.94 E-value=7.5e-06 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|+|+|.+|+|||+|+..+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999999999999874
No 282
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.93 E-value=8.3e-06 Score=49.43 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=21.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|+|+++|.+|+||||++.++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999875
No 283
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.90 E-value=3.3e-05 Score=52.51 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=41.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
+++.+||-++||||||++.+.+++- .-...|-...|.-...++.+++.+ .+.||||..+-
T Consensus 179 ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~--~liDTAGiRrk 239 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY--VLIDTAGIRRK 239 (444)
T ss_pred eEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--EEEECCCCCcc
Confidence 3688999999999999999997653 112222222344355566767765 56899997663
No 284
>PRK00098 GTPase RsgA; Reviewed
Probab=97.90 E-value=4e-05 Score=49.67 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=19.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
++++|.+|||||||++.+....
T Consensus 167 ~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 167 TVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 6789999999999999998653
No 285
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.89 E-value=5.7e-05 Score=50.15 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=34.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCC----CceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTS----GPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~----~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
.++++|.++||||||++.+..........+++ |.......+.+++. +.+.||+|-...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~~ 217 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIINS 217 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCCh
Confidence 47899999999999999998743211001111 11121222333222 469999996543
No 286
>PRK08118 topology modulation protein; Reviewed
Probab=97.89 E-value=1.1e-05 Score=48.30 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|+|+|.+|+|||+|+.++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998853
No 287
>PRK13796 GTPase YqeH; Provisional
Probab=97.87 E-value=3.6e-05 Score=51.21 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=33.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCC----CCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYP----TSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~----t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
.+.+||.++||||||++++..........+ .-|.......+.+++. ..++||+|-.
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 368999999999999999985421111011 1122222333444333 3689999974
No 288
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.86 E-value=4.3e-05 Score=47.66 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=39.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhC--CCCCC---CCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD--EFTRQ---YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~--~~~~~---~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
|.|+|+.++|||+|++++.+. .|.-. ...|.|+-.....+.. +....+.+.||.|....
T Consensus 10 vsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~ 73 (224)
T cd01851 10 VSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGR 73 (224)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCcc
Confidence 678999999999999999987 66422 2344444332222211 24567899999997543
No 289
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.86 E-value=1.5e-05 Score=51.82 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+++|.+|||||||++++..
T Consensus 167 svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred EEEECCCCCcHHHHHHhhCc
Confidence 57899999999999999985
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.86 E-value=3.9e-05 Score=46.25 Aligned_cols=54 Identities=9% Similarity=0.091 Sum_probs=41.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIG 57 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~ 57 (78)
|+|.+-|.+|||||+++.+..+.--... -+++ -|...++.-+++.+=+.|-|.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvg-Gf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG--YKVG-GFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC--ceee-eEEeeeeecCCeEeeeEEEEcc
Confidence 7899999999999999999885322211 2232 2667888888899999999987
No 291
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.85 E-value=3.8e-05 Score=52.76 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=43.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC--CEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ--NRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~--~~~~~l~iwD~~G~~~~~~ 64 (78)
.|+|+|+.++|||+|+.++... +.+.++.+.+|..-.+.-+ +...++.+|-..|...+..
T Consensus 27 ~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~ 88 (472)
T PF05783_consen 27 SVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSD 88 (472)
T ss_pred eEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHh
Confidence 3899999999999999998654 3466788888744443322 2245789998888666655
No 292
>KOG1423|consensus
Probab=97.78 E-value=6.9e-05 Score=49.32 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=36.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCC---CCCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTR---QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
.+.|||.++||||+|.++.++.+... ....|. .+ ..-.+......+.++||+|--
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr-~~---ilgi~ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTR-HR---ILGIITSGETQLVFYDTPGLV 131 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCcccccccccccee-ee---eeEEEecCceEEEEecCCccc
Confidence 47899999999999999999766421 111221 11 111234566778999999953
No 293
>PRK06217 hypothetical protein; Validated
Probab=97.77 E-value=2e-05 Score=47.48 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|+|+|+|.+|+|||++..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999854
No 294
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.76 E-value=7.9e-05 Score=50.72 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=38.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
|++||-++||||||.+|++..+. .+++ |-+.-|-........+.. +.+.||+|-+.-
T Consensus 6 VAIVGRPNVGKSTLFNRL~g~r~AIV~D~-pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~ 64 (444)
T COG1160 6 VAIVGRPNVGKSTLFNRLTGRRIAIVSDT-PGVTRDRIYGDAEWLGRE--FILIDTGGLDDG 64 (444)
T ss_pred EEEECCCCCcHHHHHHHHhCCeeeEeecC-CCCccCCccceeEEcCce--EEEEECCCCCcC
Confidence 78999999999999999997653 2222 222223323344555555 788999998753
No 295
>KOG1547|consensus
Probab=97.75 E-value=7.8e-05 Score=47.80 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=37.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCC---------CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTR---------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~---------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+|.|||.+|.|||++++.+...+..+ .+..|.........+.=++-..+|.+.||+|-..
T Consensus 48 NIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 48899999999999998876433221 1222222222222233345577888999998544
No 296
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.74 E-value=1.6e-05 Score=47.73 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=33.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDI 56 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~ 56 (78)
++++-|++|+|||+++.+++..- .....+.-| |.+..+.-++..+-+.+-|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccce--EEeecccCCCceEEEEEEEC
Confidence 47899999999999999988431 111223334 55666555666666677676
No 297
>KOG3886|consensus
Probab=97.72 E-value=6.8e-06 Score=52.12 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=34.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
++++.|-+|+||||+=.-+..+ .++ ...++-.+|+..-.+.+- ..+-|.+||+.||+.|
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D-~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~f 66 (295)
T KOG3886|consen 6 KVLLMGRSGSGKSSMRSIIFANYIARD-TRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEF 66 (295)
T ss_pred eEEEeccCCCCccccchhhhhhhhhhh-hhccCCcceeeehhhhhh-hhheeehhccCCcHHH
Confidence 4899999999999984433321 121 112222234433333332 2356899999999854
No 298
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.71 E-value=8.2e-05 Score=49.13 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=35.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCEEEEEEEecCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G 58 (78)
++++||.+.||||||+..+.+-+. ..+|..|.-... ---+.+ +...+|+.|++|
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~V-PG~l~Y--~ga~IQild~Pg 119 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPV-PGMLEY--KGAQIQLLDLPG 119 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccccccCceecccc-cceEee--cCceEEEEcCcc
Confidence 478999999999999999997543 233443331111 111233 567789999886
No 299
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.71 E-value=3.4e-05 Score=56.02 Aligned_cols=75 Identities=16% Similarity=0.061 Sum_probs=45.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC--CC---------CCCC---CCCceeE--EEEEEE--------------CCEEEEE
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF--TR---------QYYP---TSGPDFH--LKLLTI--------------QNRGVKL 51 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~--~~---------~~~~---t~~~~~~--~~~i~~--------------~~~~~~l 51 (78)
+|.++|..++|||||+.++....- .. ++.+ ..+..+. ...+.. .++...+
T Consensus 21 ni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
T PLN00116 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLI 100 (843)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEE
Confidence 378999999999999999974321 00 0101 0011111 111111 1236778
Q ss_pred EEecCCCCCccCCcCchHhhhccCccC
Q psy2599 52 ILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 52 ~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++.||+|+.+|.. -...-.+.+|+|
T Consensus 101 nliDtPGh~dF~~--e~~~al~~~D~a 125 (843)
T PLN00116 101 NLIDSPGHVDFSS--EVTAALRITDGA 125 (843)
T ss_pred EEECCCCHHHHHH--HHHHHHhhcCEE
Confidence 9999999999976 555556667664
No 300
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=3.3e-05 Score=43.15 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|+|.|.+|+|||++++++...
T Consensus 2 I~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999864
No 301
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00017 Score=51.19 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=38.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
++.++|+++||||+|.++++.....--.-|-+.++-..-.+.. +.-.+++-|.+|.-.
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~--~~~~i~ivDLPG~YS 62 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY--KGHEIEIVDLPGTYS 62 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe--cCceEEEEeCCCcCC
Confidence 3788999999999999999975443233443333433333444 344478899988644
No 302
>PTZ00416 elongation factor 2; Provisional
Probab=97.70 E-value=5.1e-05 Score=55.13 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=45.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC--CCC---------CCCC---CCCceeE--EEEEEEC--------CEEEEEEEecCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE--FTR---------QYYP---TSGPDFH--LKLLTIQ--------NRGVKLILWDIG 57 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~--~~~---------~~~~---t~~~~~~--~~~i~~~--------~~~~~l~iwD~~ 57 (78)
+|.++|..++|||||+.++.... ... ++.+ -.+.... ...+..+ ++...+.+.||+
T Consensus 21 ni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtP 100 (836)
T PTZ00416 21 NMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSP 100 (836)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCC
Confidence 37899999999999999997521 110 0000 0011110 1112222 235678999999
Q ss_pred CCCccCCcCchHhhhccCccC
Q psy2599 58 GKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 58 G~~~~~~~~~~~~~~~~~~~~ 78 (78)
|..+|.. -...-.+.+|+|
T Consensus 101 G~~~f~~--~~~~al~~~D~a 119 (836)
T PTZ00416 101 GHVDFSS--EVTAALRVTDGA 119 (836)
T ss_pred CHHhHHH--HHHHHHhcCCeE
Confidence 9999876 556667777764
No 303
>PRK03839 putative kinase; Provisional
Probab=97.70 E-value=3.2e-05 Score=46.28 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=20.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|+|+++|.+|+|||++..++...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998754
No 304
>KOG3859|consensus
Probab=97.69 E-value=8.3e-05 Score=48.57 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=40.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCC----CCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQ----YYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~----~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
+|+.||+.|.|||+|+..+.+-.|... ..|++........+.=.+-.++|.|.||.|-
T Consensus 44 NilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 44 NILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred EEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 478999999999999999998887643 3344433222222222466788999999884
No 305
>COG1159 Era GTPase [General function prediction only]
Probab=97.68 E-value=0.00013 Score=47.47 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=36.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC--CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT--RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
+.+||-++||||+|++++++.+.. ..-..|.-. ..+-+... ....+.+.||+|--+-
T Consensus 9 VaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~--~I~GI~t~-~~~QiIfvDTPGih~p 67 (298)
T COG1159 9 VAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN--RIRGIVTT-DNAQIIFVDTPGIHKP 67 (298)
T ss_pred EEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhh--heeEEEEc-CCceEEEEeCCCCCCc
Confidence 678999999999999999987642 211222211 12333222 2566788999996554
No 306
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.68 E-value=3.6e-05 Score=55.13 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=47.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC--CCC---------CCC-------CCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE--FTR---------QYY-------PTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~--~~~---------~~~-------~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
|.++|..+.|||||+.+++... ... ++. .|+...........+++...+.+.||+|..+|..
T Consensus 23 i~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~ 102 (731)
T PRK07560 23 IGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGG 102 (731)
T ss_pred EEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHH
Confidence 7899999999999999997421 110 000 1111110011112345577889999999999977
Q ss_pred cCchHhhhccCccC
Q psy2599 65 AGLVKTYLSSANIS 78 (78)
Q Consensus 65 ~~~~~~~~~~~~~~ 78 (78)
......+.+|+|
T Consensus 103 --~~~~~l~~~D~a 114 (731)
T PRK07560 103 --DVTRAMRAVDGA 114 (731)
T ss_pred --HHHHHHHhcCEE
Confidence 777777888764
No 307
>PRK00007 elongation factor G; Reviewed
Probab=97.66 E-value=4.6e-05 Score=54.32 Aligned_cols=72 Identities=8% Similarity=-0.048 Sum_probs=42.4
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCCC----------------CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFTR----------------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~~----------------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
+|.++|..++|||||+.++.. +.... +...-+..+.....+.. +...+.+.||+|..+|.
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KDHRINIIDTPGHVDFT 89 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE--CCeEEEEEeCCCcHHHH
Confidence 478999999999999999973 21100 01111112222223333 34567889999988775
Q ss_pred CcCchHhhhccCcc
Q psy2599 64 SAGLVKTYLSSANI 77 (78)
Q Consensus 64 ~~~~~~~~~~~~~~ 77 (78)
. -...-.+.+|+
T Consensus 90 ~--ev~~al~~~D~ 101 (693)
T PRK00007 90 I--EVERSLRVLDG 101 (693)
T ss_pred H--HHHHHHHHcCE
Confidence 4 34444555554
No 308
>PRK14532 adenylate kinase; Provisional
Probab=97.63 E-value=4.8e-05 Score=45.79 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=20.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|+++|.+|+|||++..++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999975
No 309
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.62 E-value=5.3e-05 Score=43.36 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
|+++|.+|+|||+++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999987
No 310
>PRK13695 putative NTPase; Provisional
Probab=97.59 E-value=5.9e-05 Score=45.00 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=20.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++++.|++|+|||+|+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999998653
No 311
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.56 E-value=7.6e-05 Score=41.85 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 588999999999999999864
No 312
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.53 E-value=8.3e-05 Score=42.61 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||++++.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998874
No 313
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.52 E-value=7.8e-05 Score=44.13 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=15.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++|.|++|+|||+|+.++..
T Consensus 27 ~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 27 LLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp EEE-B-TTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999998764
No 314
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.46 E-value=0.00056 Score=44.75 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=26.2
Q ss_pred EEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 47 RGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 47 ~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+.+.+.+||++||...+. .|.+||.++++
T Consensus 159 ~~~~~~~~DvgGq~~~R~--kW~~~f~~v~~ 187 (317)
T cd00066 159 KNLKFRMFDVGGQRSERK--KWIHCFEDVTA 187 (317)
T ss_pred cceEEEEECCCCCcccch--hHHHHhCCCCE
Confidence 467889999999999999 99999998875
No 315
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.46 E-value=0.00011 Score=46.21 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=20.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|+|+++|.+|+|||++..++...
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998753
No 316
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.46 E-value=0.0004 Score=40.68 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=25.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC-CCCCCCCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE-FTRQYYPTSG 34 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~-~~~~~~~t~~ 34 (78)
|+++|..++|||||++-+.+.. .+....|+..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~ 33 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTA 33 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTS
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccccccc
Confidence 6899999999999999999877 4444444443
No 317
>PF05729 NACHT: NACHT domain
Probab=97.45 E-value=0.00011 Score=42.59 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|.|++|+|||+++.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 578999999999999998853
No 318
>KOG0705|consensus
Probab=97.45 E-value=7.7e-05 Score=52.27 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=48.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
|++=|||+.++|||+|++||..+.|..+..| .+..| .+++.++++...+.+.|-+|.
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~-kkE~vv~gqs~lLlirdeg~~ 87 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRF-KKEVVVDGQSHLLLIRDEGGH 87 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccccCC-cCccc-eeeEEeeccceEeeeecccCC
Confidence 5678999999999999999999999866555 45566 778888999999999998873
No 319
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.45 E-value=0.00012 Score=41.21 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++.++...
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 320
>PRK00625 shikimate kinase; Provisional
Probab=97.44 E-value=0.00013 Score=44.04 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|+|+++|.+|+|||++...+...
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999988653
No 321
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.44 E-value=0.00054 Score=45.32 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=32.0
Q ss_pred CCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 29 YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 29 ~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
..||.|.. ...+.+ ..+++.+||++||...+. .|.+||.++++
T Consensus 168 r~~T~Gi~--~~~f~~--~~~~~~~~DvgGqr~~R~--kW~~~f~~v~~ 210 (342)
T smart00275 168 RVPTTGIQ--ETAFIV--KKLFFRMFDVGGQRSERK--KWIHCFDNVTA 210 (342)
T ss_pred eCCccceE--EEEEEE--CCeEEEEEecCCchhhhh--hHHHHhCCCCE
Confidence 34556643 333444 346788999999999999 99999998875
No 322
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.00015 Score=47.98 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=19.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
++++|++|||||++++....-+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6889999999999999998754
No 323
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.43 E-value=0.00013 Score=45.04 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=20.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|+|+|.+|+|||++..++..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999988864
No 324
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.41 E-value=0.00013 Score=43.98 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||||++.+...
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 688999999999999999754
No 325
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.40 E-value=0.0002 Score=39.60 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=20.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT 26 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~ 26 (78)
++++|++|+|||+++..+...-..
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 688999999999999999876544
No 326
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.40 E-value=0.00015 Score=43.25 Aligned_cols=21 Identities=5% Similarity=-0.073 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|+|++|+|||++++.+...
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998754
No 327
>PRK02496 adk adenylate kinase; Provisional
Probab=97.39 E-value=0.00014 Score=43.71 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=19.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+++++|.+|+|||+++..+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 328
>PF13173 AAA_14: AAA domain
Probab=97.37 E-value=0.00015 Score=41.26 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=20.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEF 25 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~ 25 (78)
+++.|+.+||||+++.++.....
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 67899999999999999996544
No 329
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.37 E-value=0.00019 Score=44.13 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|+..+...
T Consensus 16 ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 16 VVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEECcCCCCHHHHHHHHHhc
Confidence 678999999999999999753
No 330
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.37 E-value=0.00018 Score=41.70 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|+..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 678999999999999999864
No 331
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.34 E-value=0.00019 Score=43.67 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|+.++...
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999864
No 332
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00025 Score=44.64 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=19.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
++++|++|+|||+|+...-.-+
T Consensus 31 v~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 31 VVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEECCCCCCHHHHHHHHHCCc
Confidence 6789999999999999887544
No 333
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.34 E-value=0.00077 Score=45.16 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=38.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC-C-CCCCCC-CCceeEEEEEEECCE---------------EEEEEEecCCCCCc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF-T-RQYYPT-SGPDFHLKLLTIQNR---------------GVKLILWDIGGKAN 61 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~-~-~~~~~t-~~~~~~~~~i~~~~~---------------~~~l~iwD~~G~~~ 61 (78)
|++-+||.++||||+|.+.+....- + .+|..| +..+ .-.+.+.+. ...+++.|.+|--+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~--~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~ 79 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPN--AGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVG 79 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCc--eeEEEechhHHHHHHHHhCCcCcCCceEEEEecccccc
Confidence 5678999999999999999987654 3 234333 2222 233344332 24678899998543
No 334
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.34 E-value=0.00019 Score=43.63 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=19.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
++|.|+.|+|||+|++.+....
T Consensus 23 ~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 23 ILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp EEEEESTTSSHHHHHHHHHHHC
T ss_pred EEEEcCCcCCHHHHHHHHHHHh
Confidence 5778999999999999998754
No 335
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.34 E-value=0.0002 Score=40.06 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=19.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+++.|++|+|||+++..+...-
T Consensus 22 v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 22 LLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999998653
No 336
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.34 E-value=0.00019 Score=42.74 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|+..+...
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHcc
Confidence 688999999999999999863
No 337
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.33 E-value=0.00022 Score=39.84 Aligned_cols=21 Identities=5% Similarity=0.028 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|+|.|.+|||||++++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999888754
No 338
>PRK14529 adenylate kinase; Provisional
Probab=97.31 E-value=0.0002 Score=44.89 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=20.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|+++|.+|+|||++..++..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 8899999999999999988874
No 339
>PRK14526 adenylate kinase; Provisional
Probab=97.31 E-value=0.00021 Score=44.31 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=20.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+++++|.+|+|||+++..+..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999998874
No 340
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00029 Score=44.85 Aligned_cols=22 Identities=14% Similarity=-0.082 Sum_probs=19.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+-+||++|||||+|++-...-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999988643
No 341
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.29 E-value=0.00018 Score=42.44 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=17.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
||+|.|.+++|||+|+..+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999854
No 342
>PRK14530 adenylate kinase; Provisional
Probab=97.27 E-value=0.00024 Score=43.74 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=19.0
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
+|+++|.+|+|||++..++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 343
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00025 Score=44.41 Aligned_cols=21 Identities=5% Similarity=-0.110 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|||||+|++-...-
T Consensus 34 vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEcCCCccHHHHHHHHhcC
Confidence 688999999999999998753
No 344
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.27 E-value=0.00085 Score=46.01 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=36.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC----CCC-------------CC----CCCCCCcee---EEEEEEE-CCEEEEEEEecCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD----EFT-------------RQ----YYPTSGPDF---HLKLLTI-QNRGVKLILWDIG 57 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~----~~~-------------~~----~~~t~~~~~---~~~~i~~-~~~~~~l~iwD~~ 57 (78)
|-++|+..+|||||+++|.+. ... .. ...|...-| ...++.. ++-...+.+.||+
T Consensus 20 IGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcv 99 (492)
T TIGR02836 20 IGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCV 99 (492)
T ss_pred EEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECC
Confidence 678999999999999999976 222 11 112332333 2333332 4556788899998
Q ss_pred CC
Q psy2599 58 GK 59 (78)
Q Consensus 58 G~ 59 (78)
|-
T Consensus 100 G~ 101 (492)
T TIGR02836 100 GY 101 (492)
T ss_pred Cc
Confidence 84
No 345
>PRK14531 adenylate kinase; Provisional
Probab=97.26 E-value=0.00025 Score=42.74 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
++|+++|.+|+|||++..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 346
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.25 E-value=0.00031 Score=41.31 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|.+|+|||+++..+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999988753
No 347
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.25 E-value=0.00034 Score=35.96 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.+.|.+|+|||++++.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999998854
No 348
>PRK13949 shikimate kinase; Provisional
Probab=97.24 E-value=0.00029 Score=42.22 Aligned_cols=21 Identities=5% Similarity=0.210 Sum_probs=18.8
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
+|+++|.+|+|||++...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
No 349
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.24 E-value=0.00028 Score=40.17 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|+|++|+|||+|++.+...
T Consensus 14 ~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 14 VAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEccCCCccccceeeeccc
Confidence 678999999999999877754
No 350
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.22 E-value=0.0003 Score=42.75 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|+..+...
T Consensus 8 i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 8 IVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 788999999999999998864
No 351
>KOG3905|consensus
Probab=97.21 E-value=0.00059 Score=45.53 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=39.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC--CEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ--NRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~--~~~~~l~iwD~~G~~ 60 (78)
+|+|+||.++|||+|+.++..-+ .+.+-.|.+|..-.+.-+ +...++.+|-..|..
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~ 111 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDL 111 (473)
T ss_pred eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCch
Confidence 48999999999999999998654 455666777644443322 234567778776654
No 352
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.18 E-value=0.00036 Score=41.85 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=19.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+|+++|.+|+|||++...+...
T Consensus 6 ~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 4889999999999999998753
No 353
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.17 E-value=0.00036 Score=41.62 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
++++|.+|+|||+++.++.
T Consensus 6 i~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999887
No 354
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.16 E-value=0.0004 Score=41.63 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+|+++|.+|+|||+++.++...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 355
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00038 Score=42.27 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=20.1
Q ss_pred CCceeEcCCCCCHHHHHHHHH
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~ 21 (78)
|.|.+-|-+|||||+++.++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 889999999999999999998
No 356
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.16 E-value=0.00038 Score=39.11 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=17.3
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
++++|++|+|||+|+..+.
T Consensus 18 v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 18 VLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCCCCHHHHHHHhh
Confidence 6789999999999999976
No 357
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.14 E-value=0.00039 Score=43.73 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||++++.+...
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 578999999999999999864
No 358
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.14 E-value=0.00037 Score=43.84 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 34 vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999998754
No 359
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.14 E-value=0.0016 Score=37.85 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|+.|+|||+|++.+...
T Consensus 25 i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999865
No 360
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.00042 Score=46.95 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=40.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHh--CCCCCC------------C---------------CCCCCceeEEEEEEECCEEEEE
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ--DEFTRQ------------Y---------------YPTSGPDFHLKLLTIQNRGVKL 51 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~--~~~~~~------------~---------------~~t~~~~~~~~~i~~~~~~~~l 51 (78)
++++++|....|||+|+-|+.- +.+++. - .--.|..+......+......+
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~ 87 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNF 87 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceE
Confidence 4589999999999999998863 222210 0 0011222333333344456778
Q ss_pred EEecCCCCCccCC
Q psy2599 52 ILWDIGGKANESS 64 (78)
Q Consensus 52 ~iwD~~G~~~~~~ 64 (78)
.|.|++|+..|-.
T Consensus 88 tIiDaPGHrdFvk 100 (428)
T COG5256 88 TIIDAPGHRDFVK 100 (428)
T ss_pred EEeeCCchHHHHH
Confidence 9999999887754
No 361
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00038 Score=43.91 Aligned_cols=18 Identities=17% Similarity=0.004 Sum_probs=16.1
Q ss_pred eeEcCCCCCHHHHHHHHH
Q psy2599 4 LYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 4 v~vG~~~vGKTsl~~~~~ 21 (78)
.+||++|||||+|+..+-
T Consensus 37 AlIGPSGcGKST~LR~lN 54 (253)
T COG1117 37 ALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEECCCCcCHHHHHHHHH
Confidence 579999999999998875
No 362
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.13 E-value=0.00057 Score=34.84 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=16.3
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
.++.|++|+|||+|+.-+.
T Consensus 26 tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999986655
No 363
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.13 E-value=0.00047 Score=40.25 Aligned_cols=21 Identities=5% Similarity=0.080 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+.|+|..++|||+|+..+++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998865
No 364
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.13 E-value=0.00055 Score=44.00 Aligned_cols=23 Identities=9% Similarity=0.145 Sum_probs=20.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
.++++|++|+|||++++.+....
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCS
T ss_pred cEEEECCCCCchhHHHHhhhccC
Confidence 37899999999999999988653
No 365
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00056 Score=45.55 Aligned_cols=23 Identities=9% Similarity=-0.117 Sum_probs=19.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEF 25 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~ 25 (78)
+.++|++||||||++.....-+.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 34899999999999999987543
No 366
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.10 E-value=0.0005 Score=41.46 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=19.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++||||++++.+++..
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 788999999999999999876
No 367
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.10 E-value=0.00049 Score=41.74 Aligned_cols=21 Identities=5% Similarity=-0.083 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.+.|++|+|||+|+..+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998753
No 368
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.09 E-value=0.00039 Score=42.04 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=16.9
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
+.++|++|+|||+|++-..
T Consensus 24 ~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 24 VVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6789999999999998764
No 369
>PRK06762 hypothetical protein; Provisional
Probab=97.09 E-value=0.00058 Score=40.24 Aligned_cols=21 Identities=5% Similarity=0.060 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|.+|+|||+++..+...
T Consensus 5 i~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 677999999999999988753
No 370
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.09 E-value=0.00052 Score=41.25 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+||++|+.+++.
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999986
No 371
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00051 Score=42.14 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+++.|++|||||||++.+....
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6789999999999999998654
No 372
>PRK04182 cytidylate kinase; Provisional
Probab=97.08 E-value=0.00053 Score=40.55 Aligned_cols=22 Identities=9% Similarity=-0.000 Sum_probs=20.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|++.|.+|+|||++...+..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7789999999999999999975
No 373
>PRK04040 adenylate kinase; Provisional
Probab=97.06 E-value=0.00047 Score=42.02 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=19.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
.|++.|.+|+|||+++..+...
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4788999999999999988753
No 374
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.05 E-value=0.0006 Score=41.85 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=19.2
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
+|+|+|.+|+|||++..++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 375
>PRK14528 adenylate kinase; Provisional
Probab=97.04 E-value=0.00057 Score=41.43 Aligned_cols=22 Identities=5% Similarity=0.060 Sum_probs=19.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++++|++|+|||+++.++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998863
No 376
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.03 E-value=0.00067 Score=39.20 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=18.9
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
+|+++|.+|+|||++...+..
T Consensus 1 ~i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 377
>PRK13808 adenylate kinase; Provisional
Probab=97.03 E-value=0.00056 Score=45.26 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=20.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|+|+|++|+|||++..++..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~ 22 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQ 22 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999998864
No 378
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.03 E-value=0.00064 Score=39.90 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.4
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|+++|.+|+|||++...+..
T Consensus 6 ~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999888765
No 379
>KOG1491|consensus
Probab=97.03 E-value=0.0025 Score=42.58 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=39.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC---------------CEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ---------------NRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~---------------~~~~~l~iwD~~G~~~ 61 (78)
++=+||.++||||++.+-+.+..-.....|--.+|-..-.+.+. .....|+++|+||.-+
T Consensus 22 kiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 22 KIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred eeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 46689999999999999999766544433322233333333332 1256789999998644
No 380
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.02 E-value=0.00064 Score=40.56 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+++|.+|+|||++..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998875
No 381
>PRK08233 hypothetical protein; Provisional
Probab=97.02 E-value=0.00065 Score=40.29 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.+.|.+|+|||+++.++..
T Consensus 6 I~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 56679999999999999985
No 382
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.02 E-value=0.00077 Score=37.41 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=17.6
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.+-|++|+|||.+++.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999764
No 383
>PRK13947 shikimate kinase; Provisional
Probab=97.01 E-value=0.00068 Score=40.02 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=18.8
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
+|+++|.+|+|||++...+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999875
No 384
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.01 E-value=0.00064 Score=40.89 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|.++|+|.+++|||++..++...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 56899999999999999999854
No 385
>KOG1424|consensus
Probab=97.00 E-value=0.0012 Score=46.00 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=38.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
|=+||=++|||||.|+-+.+.+-. .-..|-|-.-+.+++.+... +.+.||+|.
T Consensus 317 VG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~~---v~LCDCPGL 369 (562)
T KOG1424|consen 317 VGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSPS---VCLCDCPGL 369 (562)
T ss_pred EEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCCC---ceecCCCCc
Confidence 557999999999999999987654 23455565555566655443 678999985
No 386
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.99 E-value=0.0024 Score=39.83 Aligned_cols=52 Identities=8% Similarity=0.142 Sum_probs=30.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
+.++|.+++|||+|++.+....-........|. + .+ .......+.+.||+|.
T Consensus 42 i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~ 93 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPND 93 (225)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCch
Confidence 678999999999999888754211111111121 1 11 1123455678899874
No 387
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.98 E-value=0.00073 Score=38.80 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 578999999999999998643
No 388
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.98 E-value=0.00071 Score=41.45 Aligned_cols=20 Identities=5% Similarity=-0.149 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|.+|+|||+|++.+..
T Consensus 9 i~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999998874
No 389
>PHA00729 NTP-binding motif containing protein
Probab=96.97 E-value=0.00067 Score=42.72 Aligned_cols=22 Identities=9% Similarity=0.292 Sum_probs=19.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++.|.+|||||+|+......
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 390
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.97 E-value=0.00078 Score=39.03 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|.+|+|||++...+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 578999999999999998764
No 391
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.96 E-value=0.00069 Score=43.41 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
..++|++|||||||++.+..
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999875
No 392
>PRK06547 hypothetical protein; Provisional
Probab=96.96 E-value=0.00066 Score=40.89 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|+|.|.+|+|||++...+...
T Consensus 18 i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 18 VLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 566799999999999998753
No 393
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.94 E-value=0.0008 Score=40.06 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|.|++|+|||+|..+|...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999998643
No 394
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.00071 Score=43.08 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++||++|+|||+|+.....
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 68899999999999998775
No 395
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.93 E-value=0.0011 Score=40.89 Aligned_cols=21 Identities=5% Similarity=-0.078 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 16 ~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 16 IGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999988864
No 396
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.0012 Score=40.37 Aligned_cols=21 Identities=5% Similarity=-0.273 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-+...
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999864
No 397
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.92 E-value=0.00078 Score=42.87 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=19.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+++++|++|+|||+|++.+.+..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 36899999999999999988654
No 398
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.92 E-value=0.0012 Score=40.31 Aligned_cols=21 Identities=5% Similarity=-0.111 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-+..-
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 29 IALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999998864
No 399
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.91 E-value=0.0009 Score=39.96 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|++.|.+|+|||++.+.+...
T Consensus 5 i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999999864
No 400
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.91 E-value=0.0012 Score=40.54 Aligned_cols=21 Identities=10% Similarity=-0.096 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 33 ~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 33 VAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
No 401
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.90 E-value=0.001 Score=43.52 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=20.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
++++|+++.|||+++.+|....
T Consensus 64 lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHC
Confidence 7889999999999999999754
No 402
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.90 E-value=0.0012 Score=41.17 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 31 ~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 31 VAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999988753
No 403
>KOG3347|consensus
Probab=96.90 E-value=0.00089 Score=40.12 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=20.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
++|+|-|-+|+|||++..+...
T Consensus 8 PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHH
Confidence 5799999999999999999974
No 404
>PRK08356 hypothetical protein; Provisional
Probab=96.89 E-value=0.001 Score=40.49 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=19.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.+++.|.+|+|||+++.++..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999964
No 405
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.89 E-value=0.0013 Score=40.41 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 32 VFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
No 406
>KOG3887|consensus
Probab=96.89 E-value=0.00025 Score=45.63 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=38.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEE---EECCEEEEEEEecCCCCCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLL---TIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i---~~~~~~~~l~iwD~~G~~~~ 62 (78)
+|++.|...+||||+-+-...+.-|.+ |...+- +..+ .+.+.-+++++||.+||-.|
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflES-Tski~~d~is~sfinf~v~dfPGQ~~~ 88 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLES-TSKITRDHISNSFINFQVWDFPGQMDF 88 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCc---eeEeec-cCcccHhhhhhhhcceEEeecCCcccc
Confidence 478999999999999887766544432 322221 1111 23445688999999999775
No 407
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.88 E-value=0.0011 Score=49.46 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhCCCCCC----CCCCCCceeEEEEEEECC--E--------------EEEEEEecCCCCCccCCcCchHh
Q psy2599 11 EGTSCFSTRYTQDEFTRQ----YYPTSGPDFHLKLLTIQN--R--------------GVKLILWDIGGKANESSAGLVKT 70 (78)
Q Consensus 11 vGKTsl~~~~~~~~~~~~----~~~t~~~~~~~~~i~~~~--~--------------~~~l~iwD~~G~~~~~~~~~~~~ 70 (78)
|+||+|+..+.+...... ...-+|.. .+.++. + .-.+.+|||+|++.|.. ++..
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~----~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~--lr~~ 545 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGAT----EIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS--LRKR 545 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceE----EEEecccccccccccccccccCCcCcEEEEECCCcHHHHH--HHHh
Confidence 569999999986554322 11223321 122221 0 11378999999999998 8888
Q ss_pred hhccCccC
Q psy2599 71 YLSSANIS 78 (78)
Q Consensus 71 ~~~~~~~~ 78 (78)
.++.+|++
T Consensus 546 g~~~aDiv 553 (1049)
T PRK14845 546 GGSLADLA 553 (1049)
T ss_pred hcccCCEE
Confidence 88877764
No 408
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.88 E-value=0.00098 Score=40.77 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|.|.+|+|||+|+..+..
T Consensus 9 I~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999988875
No 409
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.88 E-value=0.0012 Score=39.88 Aligned_cols=21 Identities=5% Similarity=-0.141 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEECCCCChHHHHHHHHHcC
Confidence 568999999999999988754
No 410
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.87 E-value=0.0011 Score=42.01 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=20.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
.++++|+.++||||++..+....
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCC
Confidence 37899999999999999999765
No 411
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.87 E-value=0.001 Score=40.88 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=16.2
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
+++||+.|||||+.+-++.
T Consensus 4 i~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHH
Confidence 6789999999999877664
No 412
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.87 E-value=0.001 Score=40.86 Aligned_cols=21 Identities=10% Similarity=-0.099 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|||||+++..+...
T Consensus 41 lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999888753
No 413
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.87 E-value=0.0013 Score=40.44 Aligned_cols=21 Identities=10% Similarity=-0.091 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 34 LGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
No 414
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.86 E-value=0.0014 Score=40.00 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999998864
No 415
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.86 E-value=0.0009 Score=41.11 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=19.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++.++|+.|+|||+++.++.+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999998854
No 416
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0014 Score=40.03 Aligned_cols=21 Identities=5% Similarity=-0.146 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 28 ~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 28 YGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
No 417
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.85 E-value=0.0014 Score=40.31 Aligned_cols=21 Identities=5% Similarity=-0.096 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-+..-
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 29 VALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999987754
No 418
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.85 E-value=0.0015 Score=39.41 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 21 ~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 21 LALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999988754
No 419
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.85 E-value=0.0015 Score=40.16 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 34 ~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 34 VAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999865
No 420
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.84 E-value=0.0016 Score=38.59 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 29 ~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 29 HALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998864
No 421
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.84 E-value=0.0015 Score=39.70 Aligned_cols=21 Identities=14% Similarity=-0.124 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 27 YAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999999864
No 422
>PLN02459 probable adenylate kinase
Probab=96.84 E-value=0.001 Score=42.68 Aligned_cols=22 Identities=9% Similarity=0.329 Sum_probs=19.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+++++|++|+||+++..++..
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~ 51 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSK 51 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999988875
No 423
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0014 Score=40.66 Aligned_cols=21 Identities=14% Similarity=-0.091 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 29 LAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
No 424
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.84 E-value=0.00093 Score=42.19 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=15.6
Q ss_pred eEcCCCCCHHHHHHHHHh
Q psy2599 5 YIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 5 ~vG~~~vGKTsl~~~~~~ 22 (78)
|+|++|+|||+++..+.+
T Consensus 1 ViGpaGSGKTT~~~~~~~ 18 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSE 18 (238)
T ss_dssp -EESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 689999999999998874
No 425
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0012 Score=40.07 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|++||..|+||||+-+.+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH
Confidence 5699999999999999888763
No 426
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.83 E-value=0.0015 Score=40.11 Aligned_cols=21 Identities=5% Similarity=-0.178 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998864
No 427
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.0015 Score=40.63 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 30 VALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
No 428
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.83 E-value=0.0016 Score=39.82 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 29 VVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
No 429
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.82 E-value=0.0015 Score=40.12 Aligned_cols=21 Identities=10% Similarity=-0.195 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+|++..+.-
T Consensus 32 iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 32 IAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred EEEeCCCCccHHHHHHHHHhc
Confidence 789999999999999999864
No 430
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.0016 Score=40.12 Aligned_cols=21 Identities=10% Similarity=-0.130 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998854
No 431
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.82 E-value=0.0016 Score=39.86 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 31 ~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999988754
No 432
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.82 E-value=0.0016 Score=39.78 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 30 VFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999999864
No 433
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.81 E-value=0.0015 Score=40.01 Aligned_cols=21 Identities=10% Similarity=-0.113 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 28 ~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 28 LAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 578999999999999998764
No 434
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.80 E-value=0.0017 Score=39.72 Aligned_cols=21 Identities=5% Similarity=-0.154 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 29 VVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999988864
No 435
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.80 E-value=0.0011 Score=40.11 Aligned_cols=20 Identities=5% Similarity=-0.026 Sum_probs=17.6
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|.+|+|||+|+.+++.
T Consensus 9 i~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 9 LAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred EEEECCCCChHHHHHHHHHH
Confidence 46799999999999999874
No 436
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.80 E-value=0.0017 Score=39.63 Aligned_cols=21 Identities=5% Similarity=-0.184 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 29 YGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999864
No 437
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.80 E-value=0.0013 Score=38.97 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 17 vLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 17 VLITGPSGIGKSELALELIKR 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 789999999999999888764
No 438
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.80 E-value=0.0017 Score=39.45 Aligned_cols=22 Identities=5% Similarity=-0.222 Sum_probs=19.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||+|++-.....
T Consensus 30 ~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 30 LHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5789999999999999887643
No 439
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.79 E-value=0.0013 Score=39.20 Aligned_cols=20 Identities=5% Similarity=0.054 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||+++..+..
T Consensus 10 I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 10 IWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78899999999999988763
No 440
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.79 E-value=0.0013 Score=39.31 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=18.6
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
=|++.|..|+|||++++++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999874
No 441
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.79 E-value=0.0012 Score=40.73 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||.|+.+|..
T Consensus 22 ~li~G~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLY 41 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCcHHHHHHHHH
Confidence 68899999999999999874
No 442
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.79 E-value=0.0018 Score=39.27 Aligned_cols=22 Identities=9% Similarity=-0.159 Sum_probs=19.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||+|++-.....
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 29 TYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5789999999999999998753
No 443
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.79 E-value=0.0017 Score=39.85 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 31 FGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
No 444
>PLN02674 adenylate kinase
Probab=96.78 E-value=0.0013 Score=41.88 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=19.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|+++|.+|+||+++..++..
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 445
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0018 Score=39.89 Aligned_cols=21 Identities=10% Similarity=-0.184 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 29 FGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998864
No 446
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.78 E-value=0.0012 Score=41.89 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=18.2
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++|+|.+|+|||+|+..+..
T Consensus 15 r~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999998877764
No 447
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.78 E-value=0.0014 Score=38.51 Aligned_cols=22 Identities=9% Similarity=0.001 Sum_probs=19.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|-|++.|.+|+|||+++..+..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6688999999999999999975
No 448
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0018 Score=39.66 Aligned_cols=21 Identities=5% Similarity=-0.151 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 29 LALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999988753
No 449
>KOG1707|consensus
Probab=96.77 E-value=0.0055 Score=43.31 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=40.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIG 57 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~ 57 (78)
-.++|..++|||.+++.|.+..+.+++..+....+-...+...+..-.+.+-|..
T Consensus 428 C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~ 482 (625)
T KOG1707|consen 428 CFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIG 482 (625)
T ss_pred EEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecC
Confidence 4689999999999999999988887777777666655555555555455555543
No 450
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0018 Score=40.25 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 38 MAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999999864
No 451
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.77 E-value=0.0017 Score=40.96 Aligned_cols=22 Identities=9% Similarity=-0.139 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||+|++-.....
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999987643
No 452
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0019 Score=39.63 Aligned_cols=21 Identities=10% Similarity=-0.115 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 26 ~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 26 TGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998754
No 453
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0018 Score=40.94 Aligned_cols=21 Identities=5% Similarity=-0.118 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.76 E-value=0.0014 Score=40.11 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|+.|+|||+++..+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999876643
No 455
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.76 E-value=0.0019 Score=40.01 Aligned_cols=21 Identities=5% Similarity=-0.266 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 29 VGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999864
No 456
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0019 Score=40.06 Aligned_cols=21 Identities=14% Similarity=-0.159 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 34 ~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 34 FGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998864
No 457
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.75 E-value=0.003 Score=44.92 Aligned_cols=28 Identities=18% Similarity=0.026 Sum_probs=22.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSG 34 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~ 34 (78)
++.++|.+|+|||||++-...- |.|+.|
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl-----~~p~~G 508 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGF-----ETPESG 508 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----CCCCCC
Confidence 3789999999999999998863 445555
No 458
>PRK10908 cell division protein FtsE; Provisional
Probab=96.74 E-value=0.002 Score=39.74 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 31 AFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998854
No 459
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.74 E-value=0.002 Score=39.82 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 39 ~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 39 IALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999999864
No 460
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.74 E-value=0.002 Score=40.24 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 31 LVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998864
No 461
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0018 Score=41.38 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=20.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT 26 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~ 26 (78)
-+++|++|+|||||++-.....++
T Consensus 60 W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 60 WAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC
Confidence 478999999999999999876654
No 462
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.73 E-value=0.002 Score=39.94 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 36 KLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999988764
No 463
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.73 E-value=0.0015 Score=40.09 Aligned_cols=21 Identities=5% Similarity=0.180 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|..|+|||+|+.++...
T Consensus 25 i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 25 LNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999754
No 464
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.73 E-value=0.002 Score=40.13 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 30 VALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998854
No 465
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.73 E-value=0.002 Score=37.49 Aligned_cols=21 Identities=10% Similarity=-0.050 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 568999999999999998764
No 466
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.73 E-value=0.0022 Score=38.22 Aligned_cols=21 Identities=14% Similarity=-0.061 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999864
No 467
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.72 E-value=0.0021 Score=38.96 Aligned_cols=21 Identities=5% Similarity=-0.230 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 29 LQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998864
No 468
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.72 E-value=0.0015 Score=40.33 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=19.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||+|++-...-.
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 29 TALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999999999988643
No 469
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.72 E-value=0.0021 Score=38.58 Aligned_cols=22 Identities=5% Similarity=-0.068 Sum_probs=19.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||+|++-.....
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 29 VGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999988653
No 470
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.002 Score=40.15 Aligned_cols=21 Identities=5% Similarity=-0.092 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999864
No 471
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.71 E-value=0.0015 Score=41.47 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=18.2
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+++.|++|+|||+++..+..
T Consensus 44 ~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999988864
No 472
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0022 Score=38.18 Aligned_cols=21 Identities=5% Similarity=-0.205 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998764
No 473
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.71 E-value=0.0019 Score=40.04 Aligned_cols=21 Identities=10% Similarity=-0.124 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 29 HGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 578999999999999998754
No 474
>PF13479 AAA_24: AAA domain
Probab=96.71 E-value=0.00094 Score=41.28 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=17.9
Q ss_pred CceeEcCCCCCHHHHHHHH
Q psy2599 2 APLYIKVLTEGTSCFSTRY 20 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~ 20 (78)
+++|.|++|+|||+++..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 6899999999999999998
No 475
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.71 E-value=0.0015 Score=41.97 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+|+..+...
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998854
No 476
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0021 Score=40.86 Aligned_cols=21 Identities=10% Similarity=-0.137 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 41 ~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 41 VAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999998864
No 477
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.71 E-value=0.0023 Score=38.38 Aligned_cols=21 Identities=10% Similarity=-0.113 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 28 ~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 28 VGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998764
No 478
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.70 E-value=0.0015 Score=40.71 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 29 HAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998864
No 479
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.70 E-value=0.0022 Score=39.23 Aligned_cols=22 Identities=5% Similarity=-0.158 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||+|++-.....
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 31 LVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999988643
No 480
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.70 E-value=0.0023 Score=38.26 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 31 IALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 568999999999999998864
No 481
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.70 E-value=0.0018 Score=38.64 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=18.6
Q ss_pred CC-ceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MA-PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~-~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+ +.++|.+|+|||+|+.++..
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44 45799999999999999885
No 482
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0023 Score=39.13 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 27 ~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 27 TAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999988754
No 483
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.69 E-value=0.0016 Score=41.79 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=17.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|.+|+|||++.+++...
T Consensus 5 iil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 566899999999999998753
No 484
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.0024 Score=38.19 Aligned_cols=21 Identities=10% Similarity=-0.081 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 29 VALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998853
No 485
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0023 Score=39.51 Aligned_cols=22 Identities=5% Similarity=-0.088 Sum_probs=19.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||+|++-.....
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 32 VAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEECCCCCCHHHHHHHHhcCc
Confidence 5789999999999999998643
No 486
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.67 E-value=0.0018 Score=37.89 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|.+|+|||+++..+...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999887753
No 487
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.67 E-value=0.0018 Score=39.16 Aligned_cols=21 Identities=10% Similarity=-0.096 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|+.|+|||++++-+...
T Consensus 28 i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999887754
No 488
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.66 E-value=0.0024 Score=38.92 Aligned_cols=21 Identities=5% Similarity=-0.197 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 30 VQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999988864
No 489
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.66 E-value=0.0023 Score=39.56 Aligned_cols=21 Identities=5% Similarity=-0.107 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 29 TCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999988754
No 490
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.66 E-value=0.0024 Score=40.10 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 32 LGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999988864
No 491
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.65 E-value=0.0029 Score=39.80 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||+|++-+..-.
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 36 TALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5789999999999999988643
No 492
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.65 E-value=0.0022 Score=40.92 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 36 ~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 36 TAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998864
No 493
>PRK13946 shikimate kinase; Provisional
Probab=96.65 E-value=0.002 Score=38.85 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=19.0
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|+++|.+|+|||++...+..
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 494
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.0018 Score=39.27 Aligned_cols=21 Identities=5% Similarity=0.004 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-+...
T Consensus 36 ~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 36 TALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999998864
No 495
>PRK13975 thymidylate kinase; Provisional
Probab=96.65 E-value=0.0017 Score=39.07 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|..|+|||+++..+..
T Consensus 5 I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998875
No 496
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.64 E-value=0.0019 Score=38.90 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|.+|+|||+++..+..
T Consensus 6 i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999998875
No 497
>PRK14527 adenylate kinase; Provisional
Probab=96.64 E-value=0.0019 Score=39.05 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|.+|+|||+++.++..
T Consensus 9 i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998863
No 498
>KOG1486|consensus
Probab=96.63 E-value=0.0039 Score=40.46 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=33.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G 58 (78)
|+++||-+.||||+|+......+.. ..|..|. ...---.+.+++ -++++.|.+|
T Consensus 64 RValIGfPSVGKStlLs~iT~T~SeaA~yeFTT-LtcIpGvi~y~g--a~IQllDLPG 118 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSEAASYEFTT-LTCIPGVIHYNG--ANIQLLDLPG 118 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhhhhceeeeE-EEeecceEEecC--ceEEEecCcc
Confidence 5889999999999999998854422 2233332 122122334433 4567788776
No 499
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.63 E-value=0.0025 Score=39.17 Aligned_cols=21 Identities=10% Similarity=-0.130 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 40 ~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 40 LLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
No 500
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.63 E-value=0.0025 Score=39.71 Aligned_cols=21 Identities=5% Similarity=-0.270 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-....
T Consensus 32 ~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 32 VGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999864
Done!