Query psy2599
Match_columns 78
No_of_seqs 142 out of 1136
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 20:15:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 2.4E-27 8.2E-32 145.3 7.2 75 2-78 15-89 (216)
2 1z2a_A RAS-related protein RAB 99.8 9.5E-21 3.3E-25 109.5 8.7 76 1-78 6-81 (168)
3 3q3j_B RHO-related GTP-binding 99.8 3.5E-21 1.2E-25 116.7 7.1 75 1-78 28-102 (214)
4 2hxs_A RAB-26, RAS-related pro 99.8 2E-21 6.9E-26 113.5 5.7 75 2-78 8-83 (178)
5 2hup_A RAS-related protein RAB 99.8 3.3E-21 1.1E-25 115.7 6.4 75 2-78 31-105 (201)
6 1ek0_A Protein (GTP-binding pr 99.8 1.1E-20 3.9E-25 109.1 8.5 75 2-78 5-79 (170)
7 2ew1_A RAS-related protein RAB 99.8 5.2E-21 1.8E-25 115.3 7.3 75 2-78 28-102 (201)
8 2j0v_A RAC-like GTP-binding pr 99.8 7.4E-21 2.5E-25 114.3 7.6 74 2-78 11-84 (212)
9 2bcg_Y Protein YP2, GTP-bindin 99.8 1.6E-20 5.5E-25 112.4 9.0 74 2-77 10-83 (206)
10 1m7b_A RND3/RHOE small GTP-bin 99.8 8.2E-21 2.8E-25 112.2 7.2 74 2-78 9-82 (184)
11 3reg_A RHO-like small GTPase; 99.8 1.4E-20 4.8E-25 111.8 8.1 75 1-78 24-98 (194)
12 1z08_A RAS-related protein RAB 99.8 7.4E-21 2.5E-25 110.2 6.8 74 2-77 8-81 (170)
13 2a5j_A RAS-related protein RAB 99.8 1.4E-20 4.7E-25 111.8 7.9 75 2-78 23-97 (191)
14 3c5c_A RAS-like protein 12; GD 99.8 2.2E-20 7.6E-25 110.9 8.8 72 2-77 23-94 (187)
15 1x3s_A RAS-related protein RAB 99.8 2.3E-20 7.8E-25 110.3 8.8 74 2-77 17-90 (195)
16 1r2q_A RAS-related protein RAB 99.8 2.2E-20 7.6E-25 107.9 8.5 75 2-78 8-82 (170)
17 2q3h_A RAS homolog gene family 99.8 1.8E-20 6.3E-25 111.7 8.3 74 2-78 22-95 (201)
18 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.4E-20 4.8E-25 109.8 7.4 74 2-77 9-82 (177)
19 1mh1_A RAC1; GTP-binding, GTPa 99.8 3.2E-20 1.1E-24 108.8 8.9 74 2-78 7-80 (186)
20 3t5g_A GTP-binding protein RHE 99.8 3.2E-20 1.1E-24 108.9 8.8 74 2-78 8-81 (181)
21 2atx_A Small GTP binding prote 99.8 2.1E-20 7E-25 111.0 8.0 74 2-78 20-93 (194)
22 3cpj_B GTP-binding protein YPT 99.8 2.2E-20 7.6E-25 113.4 8.3 75 2-78 15-89 (223)
23 2gf9_A RAS-related protein RAB 99.8 4.8E-20 1.6E-24 109.1 9.5 75 2-78 24-98 (189)
24 1z06_A RAS-related protein RAB 99.8 1.7E-20 5.9E-25 111.1 7.5 75 2-78 22-97 (189)
25 3tkl_A RAS-related protein RAB 99.8 3.5E-20 1.2E-24 109.7 8.8 74 2-77 18-91 (196)
26 2efe_B Small GTP-binding prote 99.8 3.5E-20 1.2E-24 108.4 8.7 75 2-78 14-88 (181)
27 2oil_A CATX-8, RAS-related pro 99.8 4.1E-20 1.4E-24 109.6 9.0 74 2-77 27-100 (193)
28 1gwn_A RHO-related GTP-binding 99.8 1.4E-20 4.7E-25 113.7 7.0 74 2-78 30-103 (205)
29 2y8e_A RAB-protein 6, GH09086P 99.8 3.2E-20 1.1E-24 108.2 7.9 74 2-77 16-89 (179)
30 1g16_A RAS-related protein SEC 99.8 1.4E-20 4.9E-25 108.9 6.4 75 1-77 4-78 (170)
31 1z0j_A RAB-22, RAS-related pro 99.8 4.6E-20 1.6E-24 106.7 8.5 75 1-77 7-81 (170)
32 2bme_A RAB4A, RAS-related prot 99.8 1.9E-20 6.4E-25 110.1 6.8 75 2-78 12-86 (186)
33 1z0f_A RAB14, member RAS oncog 99.8 3E-20 1E-24 108.2 7.6 74 2-77 17-90 (179)
34 3tw8_B RAS-related protein RAB 99.8 3.2E-20 1.1E-24 108.3 7.6 74 2-77 11-84 (181)
35 2fu5_C RAS-related protein RAB 99.8 2.3E-21 7.9E-26 113.9 2.5 75 2-78 10-84 (183)
36 2gco_A H9, RHO-related GTP-bin 99.8 5.5E-20 1.9E-24 110.1 8.3 74 2-78 27-100 (201)
37 1zbd_A Rabphilin-3A; G protein 99.8 3.3E-20 1.1E-24 110.7 7.3 74 2-77 10-83 (203)
38 1c1y_A RAS-related protein RAP 99.8 2.9E-20 9.9E-25 107.3 6.8 73 2-77 5-77 (167)
39 2fn4_A P23, RAS-related protei 99.8 8E-20 2.7E-24 106.6 8.6 73 2-77 11-83 (181)
40 3kkq_A RAS-related protein M-R 99.8 6.8E-20 2.3E-24 107.6 8.3 74 2-78 20-93 (183)
41 2fg5_A RAB-22B, RAS-related pr 99.8 4.5E-20 1.5E-24 109.7 7.5 74 2-77 25-98 (192)
42 2il1_A RAB12; G-protein, GDP, 99.8 1.6E-20 5.6E-25 111.8 5.4 74 2-77 28-101 (192)
43 2p5s_A RAS and EF-hand domain 99.8 2.3E-20 7.8E-25 111.5 6.1 75 2-78 30-104 (199)
44 1vg8_A RAS-related protein RAB 99.8 4.4E-20 1.5E-24 110.2 7.3 75 2-78 10-84 (207)
45 3cph_A RAS-related protein SEC 99.8 9.6E-20 3.3E-24 109.1 8.7 74 2-77 22-95 (213)
46 2g6b_A RAS-related protein RAB 99.8 8.3E-20 2.8E-24 106.7 8.1 74 2-77 12-86 (180)
47 3clv_A RAB5 protein, putative; 99.8 7.5E-20 2.6E-24 108.1 7.8 75 2-78 9-120 (208)
48 2o52_A RAS-related protein RAB 99.8 2.4E-20 8.3E-25 111.7 5.6 75 2-78 27-101 (200)
49 2f9l_A RAB11B, member RAS onco 99.8 1.1E-19 3.9E-24 108.6 8.4 74 2-77 7-80 (199)
50 1oix_A RAS-related protein RAB 99.8 1.5E-19 5.2E-24 107.8 8.9 74 2-77 31-104 (191)
51 2j1l_A RHO-related GTP-binding 99.8 3.9E-20 1.3E-24 111.9 6.3 74 2-78 36-109 (214)
52 2fv8_A H6, RHO-related GTP-bin 99.8 1.3E-19 4.4E-24 108.9 8.2 74 2-78 27-100 (207)
53 3bwd_D RAC-like GTP-binding pr 99.8 1.3E-20 4.5E-25 110.3 3.4 75 1-78 9-83 (182)
54 1kao_A RAP2A; GTP-binding prot 99.8 1.2E-19 4E-24 104.5 7.3 73 2-77 5-77 (167)
55 3bc1_A RAS-related protein RAB 99.8 7.6E-20 2.6E-24 107.6 6.4 75 2-78 13-97 (195)
56 4dsu_A GTPase KRAS, isoform 2B 99.8 2.4E-19 8.2E-24 105.3 8.4 74 1-77 5-78 (189)
57 2zej_A Dardarin, leucine-rich 99.8 1E-20 3.4E-25 112.0 2.5 75 1-77 3-82 (184)
58 4gzl_A RAS-related C3 botulinu 99.8 1.2E-19 4.1E-24 109.0 7.2 74 2-78 32-105 (204)
59 1u8z_A RAS-related protein RAL 99.8 1.2E-19 4.2E-24 104.5 6.9 73 2-77 6-78 (168)
60 1ky3_A GTP-binding protein YPT 99.8 4.1E-20 1.4E-24 107.9 4.8 75 2-78 10-85 (182)
61 3oes_A GTPase rhebl1; small GT 99.8 1.1E-19 3.9E-24 108.6 6.4 74 2-78 26-99 (201)
62 2erx_A GTP-binding protein DI- 99.8 2.2E-19 7.6E-24 103.8 7.4 74 1-77 4-77 (172)
63 2bov_A RAla, RAS-related prote 99.8 2.2E-19 7.4E-24 107.0 7.3 73 2-77 16-88 (206)
64 3r7w_B Gtpase2, GTP-binding pr 99.8 5E-20 1.7E-24 119.0 4.5 71 2-78 1-76 (331)
65 2a9k_A RAS-related protein RAL 99.8 2.8E-19 9.5E-24 104.7 7.3 73 2-77 20-92 (187)
66 3gj0_A GTP-binding nuclear pro 99.8 4.2E-20 1.4E-24 111.8 3.7 75 2-78 17-91 (221)
67 3t1o_A Gliding protein MGLA; G 99.8 1.1E-20 3.7E-25 111.6 0.8 74 2-78 16-101 (198)
68 2ce2_X GTPase HRAS; signaling 99.8 5.7E-19 1.9E-23 101.3 7.8 73 2-77 5-77 (166)
69 3con_A GTPase NRAS; structural 99.8 6.5E-19 2.2E-23 104.1 7.9 73 2-77 23-95 (190)
70 2atv_A RERG, RAS-like estrogen 99.8 6.4E-19 2.2E-23 104.9 7.8 72 2-77 30-101 (196)
71 3cbq_A GTP-binding protein REM 99.8 1.6E-19 5.5E-24 108.1 5.1 76 2-78 25-100 (195)
72 2gf0_A GTP-binding protein DI- 99.8 4.4E-19 1.5E-23 105.2 6.6 73 2-77 10-82 (199)
73 3dz8_A RAS-related protein RAB 99.8 1.3E-20 4.4E-25 111.9 -0.1 76 1-78 24-99 (191)
74 2f7s_A C25KG, RAS-related prot 99.8 3.7E-20 1.3E-24 111.6 1.9 74 2-77 27-110 (217)
75 2iwr_A Centaurin gamma 1; ANK 99.8 7.8E-19 2.7E-23 102.7 7.2 67 2-77 9-75 (178)
76 2yc2_C IFT27, small RAB-relate 99.8 1.9E-20 6.5E-25 111.6 -0.1 75 2-78 22-100 (208)
77 3q85_A GTP-binding protein REM 99.8 6E-19 2.1E-23 102.2 6.2 76 1-77 3-78 (169)
78 2nzj_A GTP-binding protein REM 99.8 1.3E-18 4.6E-23 101.0 7.1 73 2-77 6-80 (175)
79 3l0i_B RAS-related protein RAB 99.8 3.3E-20 1.1E-24 110.8 -0.1 74 2-77 35-108 (199)
80 3q72_A GTP-binding protein RAD 99.8 1.3E-18 4.3E-23 100.6 6.4 74 1-78 3-76 (166)
81 4bas_A ADP-ribosylation factor 99.8 5E-19 1.7E-23 104.9 4.5 71 2-78 19-90 (199)
82 2cjw_A GTP-binding protein GEM 99.8 1.9E-18 6.4E-23 103.2 7.0 74 2-78 8-84 (192)
83 2wkq_A NPH1-1, RAS-related C3 99.8 2.9E-18 9.8E-23 108.4 8.1 74 2-78 157-230 (332)
84 3ihw_A Centg3; RAS, centaurin, 99.8 2.4E-18 8.1E-23 102.1 7.1 61 1-63 21-81 (184)
85 1r8s_A ADP-ribosylation factor 99.8 9.5E-19 3.2E-23 100.9 5.2 71 1-78 1-71 (164)
86 1zd9_A ADP-ribosylation factor 99.8 4.3E-19 1.5E-23 105.2 3.7 72 1-78 23-94 (188)
87 1m2o_B GTP-binding protein SAR 99.8 6.1E-18 2.1E-22 100.6 8.6 70 2-78 25-94 (190)
88 1f6b_A SAR1; gtpases, N-termin 99.8 1.3E-18 4.5E-23 104.2 5.5 70 2-78 27-96 (198)
89 3th5_A RAS-related C3 botulinu 99.6 7E-20 2.4E-24 109.6 0.0 75 1-78 31-105 (204)
90 2g3y_A GTP-binding protein GEM 99.7 2E-18 6.8E-23 105.2 5.8 74 2-78 39-115 (211)
91 2h57_A ADP-ribosylation factor 99.7 2.4E-18 8.3E-23 101.8 5.8 70 2-77 23-93 (190)
92 1zj6_A ADP-ribosylation factor 99.7 1.9E-18 6.4E-23 102.1 5.3 70 2-78 18-87 (187)
93 1upt_A ARL1, ADP-ribosylation 99.7 6.6E-18 2.3E-22 97.8 6.8 69 2-77 9-77 (171)
94 4djt_A GTP-binding nuclear pro 99.7 1.9E-18 6.5E-23 104.1 3.7 75 2-78 13-88 (218)
95 2lkc_A Translation initiation 99.7 6.5E-18 2.2E-22 98.5 5.8 72 2-77 10-81 (178)
96 2h17_A ADP-ribosylation factor 99.7 3.3E-18 1.1E-22 100.7 4.5 70 2-78 23-92 (181)
97 1ksh_A ARF-like protein 2; sma 99.7 9.4E-18 3.2E-22 98.8 6.1 69 2-77 20-88 (186)
98 2b6h_A ADP-ribosylation factor 99.7 5.7E-18 1.9E-22 100.9 4.8 70 2-78 31-100 (192)
99 1fzq_A ADP-ribosylation factor 99.7 2.4E-18 8.1E-23 101.7 3.0 70 2-78 18-87 (181)
100 2fh5_B SR-beta, signal recogni 99.7 4.4E-18 1.5E-22 102.3 3.6 73 1-77 8-81 (214)
101 2wji_A Ferrous iron transport 99.7 4.4E-17 1.5E-21 94.8 6.5 74 2-77 5-84 (165)
102 2x77_A ADP-ribosylation factor 99.7 6.6E-18 2.3E-22 99.7 3.0 70 2-78 24-93 (189)
103 1moz_A ARL1, ADP-ribosylation 99.7 7.8E-18 2.7E-22 98.7 2.9 69 2-77 20-88 (183)
104 3llu_A RAS-related GTP-binding 99.7 4.9E-18 1.7E-22 101.2 1.9 73 1-78 21-99 (196)
105 2wjg_A FEOB, ferrous iron tran 99.7 1.4E-16 4.9E-21 93.7 5.6 69 2-74 9-83 (188)
106 3r7w_A Gtpase1, GTP-binding pr 99.7 9.8E-17 3.3E-21 102.1 5.0 73 1-78 4-84 (307)
107 3o47_A ADP-ribosylation factor 99.6 7.1E-17 2.4E-21 103.7 1.3 69 2-77 167-235 (329)
108 3lvq_E ARF-GAP with SH3 domain 99.6 5E-16 1.7E-20 103.7 5.3 70 2-78 324-393 (497)
109 2cxx_A Probable GTP-binding pr 99.6 1.8E-16 6.1E-21 93.2 2.7 70 1-78 2-83 (190)
110 3c5h_A Glucocorticoid receptor 99.6 8.8E-18 3E-22 104.5 -3.6 70 2-73 21-140 (255)
111 3dpu_A RAB family protein; roc 99.6 2.8E-16 9.7E-21 106.0 3.0 75 1-77 42-124 (535)
112 2dyk_A GTP-binding protein; GT 99.6 1.8E-15 6.3E-20 86.7 5.4 72 2-77 3-82 (161)
113 1svi_A GTP-binding protein YSX 99.6 6.7E-16 2.3E-20 91.2 2.0 69 2-75 25-103 (195)
114 2gj8_A MNME, tRNA modification 99.6 2.2E-14 7.4E-19 84.1 8.0 72 2-77 6-86 (172)
115 2ged_A SR-beta, signal recogni 99.5 6.9E-16 2.4E-20 91.2 1.0 63 1-74 49-114 (193)
116 1nrj_B SR-beta, signal recogni 99.5 7.1E-16 2.4E-20 92.8 1.0 62 2-74 14-78 (218)
117 2qag_A Septin-2, protein NEDD5 99.5 2.6E-14 8.9E-19 92.9 4.5 74 2-77 39-135 (361)
118 3a1s_A Iron(II) transport prot 99.5 9.4E-14 3.2E-18 86.7 6.8 61 2-64 7-67 (258)
119 3pqc_A Probable GTP-binding pr 99.5 2.2E-14 7.4E-19 84.3 3.5 69 2-76 25-103 (195)
120 3b1v_A Ferrous iron uptake tra 99.5 2.8E-14 9.4E-19 89.8 3.5 71 2-77 5-83 (272)
121 3lxx_A GTPase IMAP family memb 99.5 5.7E-14 1.9E-18 86.1 4.6 57 2-60 31-89 (239)
122 3iby_A Ferrous iron transport 99.5 1.7E-13 5.7E-18 85.5 6.5 61 2-64 3-63 (256)
123 3k53_A Ferrous iron transport 99.4 2.3E-13 7.7E-18 85.0 6.9 61 2-64 5-65 (271)
124 3def_A T7I23.11 protein; chlor 99.4 2.9E-13 9.9E-18 84.2 6.9 67 2-73 38-106 (262)
125 2qu8_A Putative nucleolar GTP- 99.4 1.3E-13 4.5E-18 83.8 4.2 57 2-60 31-87 (228)
126 4dhe_A Probable GTP-binding pr 99.4 2E-14 6.7E-19 86.6 0.5 73 2-76 31-114 (223)
127 2xtp_A GTPase IMAP family memb 99.4 7.9E-13 2.7E-17 81.8 7.5 61 2-64 24-86 (260)
128 1mky_A Probable GTP-binding pr 99.4 2.2E-13 7.5E-18 90.2 5.1 72 3-78 4-85 (439)
129 3t5d_A Septin-7; GTP-binding p 99.4 1.6E-13 5.3E-18 85.9 3.9 60 2-61 10-77 (274)
130 3i8s_A Ferrous iron transport 99.4 6E-13 2E-17 83.5 5.3 61 2-64 5-65 (274)
131 2hjg_A GTP-binding protein ENG 99.3 9.2E-14 3.1E-18 91.9 0.3 73 2-78 177-261 (436)
132 3lxw_A GTPase IMAP family memb 99.3 4.8E-13 1.7E-17 82.8 3.5 57 1-59 22-80 (247)
133 3izy_P Translation initiation 99.3 3.8E-14 1.3E-18 96.3 -2.5 74 2-78 6-79 (537)
134 1wf3_A GTP-binding protein; GT 99.3 2.7E-12 9.3E-17 81.7 6.1 71 3-78 10-90 (301)
135 4dcu_A GTP-binding protein ENG 99.3 2.2E-13 7.5E-18 90.5 0.9 72 2-77 197-280 (456)
136 1h65_A Chloroplast outer envel 99.3 9.5E-13 3.3E-17 82.1 3.6 63 2-69 41-105 (270)
137 3j2k_7 ERF3, eukaryotic polype 99.3 1.6E-12 5.6E-17 86.2 4.8 74 1-78 18-122 (439)
138 2hjg_A GTP-binding protein ENG 99.3 2E-13 6.7E-18 90.3 -0.6 73 2-77 5-85 (436)
139 2qnr_A Septin-2, protein NEDD5 99.3 1.2E-12 4.1E-17 83.3 2.8 73 2-76 20-115 (301)
140 3gee_A MNME, tRNA modification 99.3 1.7E-12 5.9E-17 87.1 3.5 72 2-77 235-315 (476)
141 3p26_A Elongation factor 1 alp 99.3 5.9E-13 2E-17 89.1 0.7 74 1-78 34-138 (483)
142 4dcu_A GTP-binding protein ENG 99.2 2.6E-13 8.8E-18 90.2 -1.7 73 2-77 25-105 (456)
143 3qq5_A Small GTP-binding prote 99.2 1.3E-12 4.3E-17 86.7 1.5 74 2-78 36-117 (423)
144 3iev_A GTP-binding protein ERA 99.2 1.2E-11 4.1E-16 78.7 5.7 72 3-77 13-95 (308)
145 1n0u_A EF-2, elongation factor 99.2 1.7E-11 5.8E-16 86.7 5.4 75 2-78 21-125 (842)
146 1s0u_A EIF-2-gamma, translatio 99.2 2.2E-11 7.6E-16 80.0 4.9 75 2-78 10-108 (408)
147 2h5e_A Peptide chain release f 99.2 7.8E-12 2.7E-16 84.8 2.3 75 2-78 15-109 (529)
148 1jal_A YCHF protein; nucleotid 99.2 1.6E-11 5.5E-16 80.2 3.7 73 1-77 3-99 (363)
149 1pui_A ENGB, probable GTP-bind 99.2 3.5E-12 1.2E-16 76.1 0.4 56 2-60 28-83 (210)
150 1zo1_I IF2, translation initia 99.2 1.7E-12 5.8E-17 87.7 -1.2 73 2-78 6-78 (501)
151 2c78_A Elongation factor TU-A; 99.2 3.7E-12 1.3E-16 83.5 0.4 75 2-78 13-102 (405)
152 1mky_A Probable GTP-binding pr 99.2 2.9E-11 1E-15 80.0 4.7 60 2-63 182-242 (439)
153 2ohf_A Protein OLA1, GTP-bindi 99.2 3.2E-11 1.1E-15 79.5 4.9 77 1-77 23-119 (396)
154 3geh_A MNME, tRNA modification 99.2 6.2E-12 2.1E-16 84.1 1.4 61 2-64 226-287 (462)
155 1zun_B Sulfate adenylate trans 99.2 1.3E-11 4.3E-16 81.7 2.8 75 2-78 26-131 (434)
156 1xzp_A Probable tRNA modificat 99.1 9.9E-12 3.4E-16 83.5 2.0 73 2-77 245-326 (482)
157 1wb1_A Translation elongation 99.1 1.2E-11 4E-16 83.0 2.3 73 2-78 21-100 (482)
158 3sjy_A Translation initiation 99.1 1.4E-10 4.8E-15 76.0 7.1 70 1-78 9-102 (403)
159 1jny_A EF-1-alpha, elongation 99.1 4.8E-12 1.7E-16 83.8 0.0 71 2-78 8-111 (435)
160 3cb4_D GTP-binding protein LEP 99.1 1.3E-11 4.4E-16 84.8 1.8 75 2-78 6-98 (599)
161 1kk1_A EIF2gamma; initiation o 99.1 5.4E-11 1.8E-15 78.1 4.7 75 2-78 12-110 (410)
162 2aka_B Dynamin-1; fusion prote 99.1 1.7E-11 5.8E-16 76.7 2.0 25 2-26 28-52 (299)
163 2dy1_A Elongation factor G; tr 99.1 2.1E-11 7.2E-16 84.4 2.6 75 2-78 11-101 (665)
164 3izq_1 HBS1P, elongation facto 99.1 6.8E-12 2.3E-16 86.2 -0.2 74 1-78 168-272 (611)
165 3mca_A HBS1, elongation factor 99.1 9E-12 3.1E-16 85.4 0.2 73 2-78 179-282 (592)
166 1d2e_A Elongation factor TU (E 99.1 6.8E-12 2.3E-16 82.2 -0.5 76 1-78 4-93 (397)
167 3tr5_A RF-3, peptide chain rel 99.1 2.2E-11 7.5E-16 82.6 1.9 71 2-78 15-109 (528)
168 2hf9_A Probable hydrogenase ni 99.1 7.4E-13 2.5E-17 80.0 -5.2 71 2-76 40-127 (226)
169 2qtf_A Protein HFLX, GTP-bindi 99.1 1.4E-10 4.9E-15 75.5 4.9 55 3-59 182-236 (364)
170 1g7s_A Translation initiation 99.1 1.4E-11 4.7E-16 84.6 -0.0 75 2-78 7-97 (594)
171 1r5b_A Eukaryotic peptide chai 99.1 6.3E-11 2.2E-15 79.1 2.9 71 2-78 45-148 (467)
172 1f60_A Elongation factor EEF1A 99.1 4.2E-11 1.4E-15 79.8 2.1 71 2-78 9-112 (458)
173 2elf_A Protein translation elo 99.0 3E-11 1E-15 78.8 1.1 65 2-78 23-87 (370)
174 3t34_A Dynamin-related protein 99.0 2.2E-10 7.6E-15 74.0 4.8 25 2-26 36-60 (360)
175 2rdo_7 EF-G, elongation factor 99.0 2.9E-10 1E-14 79.2 5.2 73 2-78 12-109 (704)
176 1wxq_A GTP-binding protein; st 99.0 2.8E-10 9.6E-15 74.9 4.8 75 1-77 1-104 (397)
177 2ywe_A GTP-binding protein LEP 99.0 2.1E-10 7.2E-15 78.9 4.2 75 2-78 8-100 (600)
178 3ohm_A Guanine nucleotide-bind 99.0 5.4E-10 1.8E-14 72.1 5.2 56 17-78 132-194 (327)
179 1ega_A Protein (GTP-binding pr 99.0 1.3E-10 4.4E-15 73.8 2.2 70 3-77 11-91 (301)
180 1jwy_B Dynamin A GTPase domain 99.0 3.4E-10 1.2E-14 71.4 3.5 24 2-25 26-49 (315)
181 3avx_A Elongation factor TS, e 99.0 3.6E-11 1.2E-15 87.6 -1.2 75 2-78 298-386 (1289)
182 1dar_A EF-G, elongation factor 99.0 2.6E-10 8.8E-15 79.3 2.8 71 2-78 14-104 (691)
183 2qag_C Septin-7; cell cycle, c 98.9 8.8E-10 3E-14 73.1 4.6 61 2-62 33-101 (418)
184 2dby_A GTP-binding protein; GD 98.9 1.8E-09 6E-14 70.6 5.5 75 1-77 2-102 (368)
185 2e87_A Hypothetical protein PH 98.9 3.1E-09 1.1E-13 68.7 6.0 59 2-62 169-227 (357)
186 4fid_A G protein alpha subunit 98.9 3.8E-10 1.3E-14 73.2 1.4 55 18-78 127-188 (340)
187 2xex_A Elongation factor G; GT 98.9 2.2E-09 7.5E-14 74.7 5.3 71 2-78 12-102 (693)
188 2x2e_A Dynamin-1; nitration, h 98.9 3.3E-10 1.1E-14 73.1 1.0 25 2-26 33-57 (353)
189 1lnz_A SPO0B-associated GTP-bi 98.9 1.1E-09 3.8E-14 70.9 2.8 68 2-74 160-233 (342)
190 3cnl_A YLQF, putative uncharac 98.8 1.2E-09 4.2E-14 68.3 2.4 56 2-61 101-156 (262)
191 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1E-08 3.5E-13 67.6 5.8 60 2-61 22-97 (392)
192 1azs_C GS-alpha; complex (lyas 98.7 1.9E-08 6.4E-13 66.5 6.0 42 31-78 203-244 (402)
193 1cip_A Protein (guanine nucleo 98.7 2E-08 7E-13 65.2 5.3 44 29-78 177-220 (353)
194 2qpt_A EH domain-containing pr 98.7 5.8E-09 2E-13 71.1 2.0 25 2-26 67-91 (550)
195 2j69_A Bacterial dynamin-like 98.7 6.8E-09 2.3E-13 72.3 2.2 32 2-33 71-103 (695)
196 2xtz_A Guanine nucleotide-bind 98.7 3.1E-08 1.1E-12 64.4 4.9 51 26-78 147-210 (354)
197 1u0l_A Probable GTPase ENGC; p 98.5 1.8E-09 6.3E-14 68.5 -3.3 56 15-78 32-88 (301)
198 1zcb_A G alpha I/13; GTP-bindi 98.5 1.2E-07 4.2E-12 61.8 5.2 56 17-78 166-228 (362)
199 1puj_A YLQF, conserved hypothe 98.5 6.1E-08 2.1E-12 61.2 3.5 56 2-61 122-177 (282)
200 1udx_A The GTP-binding protein 98.4 5.2E-07 1.8E-11 59.8 4.7 56 3-60 160-216 (416)
201 2wsm_A Hydrogenase expression/ 98.2 1.3E-07 4.5E-12 56.6 -1.0 23 2-24 32-54 (221)
202 4a9a_A Ribosome-interacting GT 98.1 3.6E-06 1.2E-10 55.2 5.3 56 2-60 74-130 (376)
203 3h2y_A GTPase family protein; 97.9 7.5E-06 2.6E-10 53.3 3.7 58 2-62 162-224 (368)
204 1ye8_A Protein THEP1, hypothet 97.8 9.8E-06 3.4E-10 47.9 2.8 23 1-23 1-23 (178)
205 3ec1_A YQEH GTPase; atnos1, at 97.8 2.2E-05 7.5E-10 51.1 3.9 55 2-61 164-224 (369)
206 1f5n_A Interferon-induced guan 97.7 3.7E-05 1.3E-09 53.1 4.5 58 2-61 40-103 (592)
207 3sop_A Neuronal-specific septi 97.7 2.1E-05 7.3E-10 49.2 2.9 23 2-24 4-26 (270)
208 3vqt_A RF-3, peptide chain rel 97.7 9.2E-06 3.1E-10 55.4 1.2 70 3-78 34-127 (548)
209 1kgd_A CASK, peripheral plasma 97.7 2.7E-05 9.3E-10 45.6 2.8 20 3-22 8-27 (180)
210 3fb4_A Adenylate kinase; psych 97.7 2.6E-05 9E-10 46.5 2.7 22 1-22 1-22 (216)
211 1ex7_A Guanylate kinase; subst 97.7 3E-05 1E-09 46.3 2.9 21 2-22 3-23 (186)
212 3dl0_A Adenylate kinase; phosp 97.6 2.7E-05 9.4E-10 46.5 2.7 22 1-22 1-22 (216)
213 1lvg_A Guanylate kinase, GMP k 97.6 4.4E-05 1.5E-09 45.5 2.8 20 3-22 7-26 (198)
214 2jaq_A Deoxyguanosine kinase; 97.6 4.7E-05 1.6E-09 44.7 2.7 22 1-22 1-22 (205)
215 3sr0_A Adenylate kinase; phosp 97.5 4.7E-05 1.6E-09 46.0 2.7 22 1-22 1-22 (206)
216 3kb2_A SPBC2 prophage-derived 97.5 5.4E-05 1.8E-09 43.3 2.7 21 2-22 3-23 (173)
217 1e4v_A Adenylate kinase; trans 97.5 5.7E-05 1.9E-09 45.2 2.7 22 1-22 1-22 (214)
218 2pt5_A Shikimate kinase, SK; a 97.5 6.4E-05 2.2E-09 43.0 2.7 22 1-22 1-22 (168)
219 3a00_A Guanylate kinase, GMP k 97.5 6.2E-05 2.1E-09 44.2 2.7 20 3-22 4-23 (186)
220 3ney_A 55 kDa erythrocyte memb 97.5 6.7E-05 2.3E-09 45.2 2.8 20 3-22 22-41 (197)
221 1ly1_A Polynucleotide kinase; 97.5 8.1E-05 2.8E-09 42.8 3.0 20 3-22 5-24 (181)
222 1s96_A Guanylate kinase, GMP k 97.5 6.8E-05 2.3E-09 45.6 2.8 21 3-23 19-39 (219)
223 3tr0_A Guanylate kinase, GMP k 97.5 7.3E-05 2.5E-09 44.0 2.8 21 3-23 10-30 (205)
224 1zp6_A Hypothetical protein AT 97.5 7.6E-05 2.6E-09 43.5 2.7 21 3-23 12-32 (191)
225 1kag_A SKI, shikimate kinase I 97.5 9.2E-05 3.1E-09 42.5 3.0 21 2-22 6-26 (173)
226 3tau_A Guanylate kinase, GMP k 97.4 7.9E-05 2.7E-09 44.6 2.8 21 3-23 11-31 (208)
227 3lw7_A Adenylate kinase relate 97.4 7.5E-05 2.6E-09 42.5 2.6 20 1-20 2-21 (179)
228 2qag_B Septin-6, protein NEDD5 97.4 0.00022 7.6E-09 47.5 5.1 58 3-60 45-106 (427)
229 2qor_A Guanylate kinase; phosp 97.4 9.3E-05 3.2E-09 44.0 3.0 20 3-22 15-34 (204)
230 3t61_A Gluconokinase; PSI-biol 97.4 0.00011 3.7E-09 43.5 2.9 21 2-22 20-40 (202)
231 1z6g_A Guanylate kinase; struc 97.4 0.0001 3.5E-09 44.5 2.7 20 3-22 26-45 (218)
232 1nks_A Adenylate kinase; therm 97.4 8.2E-05 2.8E-09 43.2 2.2 21 2-22 3-23 (194)
233 1znw_A Guanylate kinase, GMP k 97.4 0.00011 3.9E-09 43.7 2.7 21 3-23 23-43 (207)
234 4gp7_A Metallophosphoesterase; 97.4 9.2E-05 3.1E-09 43.1 2.3 17 3-19 12-28 (171)
235 1kht_A Adenylate kinase; phosp 97.3 0.00012 4.3E-09 42.4 2.7 21 2-22 5-25 (192)
236 2if2_A Dephospho-COA kinase; a 97.3 0.00012 4.2E-09 43.2 2.7 21 2-22 3-23 (204)
237 2xb4_A Adenylate kinase; ATP-b 97.3 0.00012 4.2E-09 44.1 2.7 22 1-22 1-22 (223)
238 1jbk_A CLPB protein; beta barr 97.3 0.00014 4.7E-09 41.7 2.8 21 3-23 46-66 (195)
239 1qhx_A CPT, protein (chloramph 97.3 0.00014 4.8E-09 41.9 2.8 20 3-22 6-25 (178)
240 2j41_A Guanylate kinase; GMP, 97.3 0.00016 5.3E-09 42.6 2.7 21 3-23 9-29 (207)
241 2cdn_A Adenylate kinase; phosp 97.3 0.00016 5.6E-09 42.7 2.8 22 1-22 21-42 (201)
242 1zak_A Adenylate kinase; ATP:A 97.3 0.00018 6E-09 43.2 2.9 22 1-22 6-27 (222)
243 3j25_A Tetracycline resistance 97.3 3.9E-05 1.3E-09 53.1 -0.1 75 2-78 4-94 (638)
244 2bbw_A Adenylate kinase 4, AK4 97.3 0.00016 5.6E-09 44.1 2.7 20 2-21 29-48 (246)
245 3vaa_A Shikimate kinase, SK; s 97.3 0.00017 5.9E-09 42.6 2.7 21 2-22 27-47 (199)
246 2bdt_A BH3686; alpha-beta prot 97.3 0.00018 6.2E-09 42.0 2.7 20 3-22 5-24 (189)
247 1via_A Shikimate kinase; struc 97.2 0.00022 7.5E-09 41.2 3.0 21 2-22 6-26 (175)
248 2pbr_A DTMP kinase, thymidylat 97.2 0.00019 6.3E-09 41.7 2.7 22 1-22 1-22 (195)
249 1htw_A HI0065; nucleotide-bind 97.2 0.00019 6.6E-09 41.6 2.7 22 3-24 36-57 (158)
250 1zd8_A GTP:AMP phosphotransfer 97.2 0.00019 6.4E-09 43.3 2.7 21 2-22 9-29 (227)
251 1aky_A Adenylate kinase; ATP:A 97.2 0.00019 6.6E-09 42.9 2.8 22 1-22 5-26 (220)
252 3cm0_A Adenylate kinase; ATP-b 97.2 0.00015 5.2E-09 42.1 2.2 21 2-22 6-26 (186)
253 4eun_A Thermoresistant glucoki 97.2 0.0002 6.8E-09 42.4 2.8 20 3-22 32-51 (200)
254 1cke_A CK, MSSA, protein (cyti 97.2 0.0002 7E-09 42.7 2.8 21 2-22 7-27 (227)
255 2ehv_A Hypothetical protein PH 97.2 0.00021 7E-09 43.1 2.8 19 3-21 33-51 (251)
256 3c8u_A Fructokinase; YP_612366 97.2 0.00018 6.3E-09 42.8 2.4 20 3-22 25-44 (208)
257 3tlx_A Adenylate kinase 2; str 97.2 0.00016 5.6E-09 44.3 2.2 22 1-22 30-51 (243)
258 3zvr_A Dynamin-1; hydrolase, D 97.2 0.0019 6.4E-08 46.0 7.6 24 2-25 53-76 (772)
259 2z0h_A DTMP kinase, thymidylat 97.2 0.00023 8E-09 41.5 2.7 22 1-22 1-22 (197)
260 3be4_A Adenylate kinase; malar 97.2 0.00023 7.8E-09 42.7 2.7 22 1-22 6-27 (217)
261 1t9h_A YLOQ, probable GTPase E 97.2 0.00015 5.2E-09 46.4 2.0 22 3-24 176-197 (307)
262 3ec2_A DNA replication protein 97.2 0.0002 6.9E-09 41.6 2.3 20 3-22 41-60 (180)
263 2v54_A DTMP kinase, thymidylat 97.2 0.00025 8.6E-09 41.6 2.8 22 2-23 6-27 (204)
264 1y63_A LMAJ004144AAA protein; 97.2 0.00025 8.6E-09 41.5 2.7 22 2-23 12-33 (184)
265 3uie_A Adenylyl-sulfate kinase 97.2 0.00026 9E-09 41.9 2.7 20 3-22 28-47 (200)
266 2p65_A Hypothetical protein PF 97.2 0.00018 6.1E-09 41.2 1.9 21 3-23 46-66 (187)
267 2iyv_A Shikimate kinase, SK; t 97.2 0.00031 1.1E-08 40.8 3.0 22 1-22 3-24 (184)
268 4a74_A DNA repair and recombin 97.1 0.00025 8.6E-09 42.2 2.6 21 3-23 28-48 (231)
269 1e6c_A Shikimate kinase; phosp 97.1 0.00033 1.1E-08 40.1 3.0 21 2-22 4-24 (173)
270 2rhm_A Putative kinase; P-loop 97.1 0.00028 9.4E-09 41.1 2.7 20 3-22 8-27 (193)
271 1knq_A Gluconate kinase; ALFA/ 97.1 0.00029 9.8E-09 40.6 2.7 20 3-22 11-30 (175)
272 3trf_A Shikimate kinase, SK; a 97.1 0.00029 9.9E-09 40.9 2.7 20 3-22 8-27 (185)
273 2plr_A DTMP kinase, probable t 97.1 0.00023 7.9E-09 41.9 2.2 21 2-22 6-26 (213)
274 4fn5_A EF-G 1, elongation fact 97.1 0.00061 2.1E-08 47.7 4.6 74 3-78 16-112 (709)
275 3asz_A Uridine kinase; cytidin 97.1 0.00032 1.1E-08 41.6 2.7 20 3-22 9-28 (211)
276 2i3b_A HCR-ntpase, human cance 97.1 0.00035 1.2E-08 41.6 2.9 21 2-22 3-23 (189)
277 3tif_A Uncharacterized ABC tra 97.1 0.00029 9.9E-09 43.2 2.5 21 3-23 34-54 (235)
278 3bos_A Putative DNA replicatio 97.1 0.00034 1.2E-08 41.6 2.7 20 3-22 55-74 (242)
279 2wwf_A Thymidilate kinase, put 97.1 0.00036 1.2E-08 41.2 2.7 21 2-22 12-32 (212)
280 3iij_A Coilin-interacting nucl 97.1 0.00044 1.5E-08 40.0 3.0 20 3-22 14-33 (180)
281 2www_A Methylmalonic aciduria 97.1 0.00035 1.2E-08 45.1 2.8 20 3-22 77-96 (349)
282 1ak2_A Adenylate kinase isoenz 97.0 0.00039 1.3E-08 42.1 2.8 22 1-22 17-38 (233)
283 3lnc_A Guanylate kinase, GMP k 97.0 0.00019 6.6E-09 43.3 1.4 19 3-21 30-48 (231)
284 2c95_A Adenylate kinase 1; tra 97.0 0.0004 1.4E-08 40.4 2.7 21 2-22 11-31 (196)
285 1tev_A UMP-CMP kinase; ploop, 97.0 0.00032 1.1E-08 40.7 2.2 20 3-22 6-25 (196)
286 2bwj_A Adenylate kinase 5; pho 97.0 0.00041 1.4E-08 40.5 2.7 21 2-22 14-34 (199)
287 2chg_A Replication factor C sm 97.0 0.00041 1.4E-08 40.5 2.7 20 3-22 41-60 (226)
288 1njg_A DNA polymerase III subu 97.0 0.00041 1.4E-08 40.9 2.7 20 3-22 48-67 (250)
289 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00041 1.4E-08 41.2 2.7 20 3-22 26-45 (235)
290 1nn5_A Similar to deoxythymidy 97.0 0.00041 1.4E-08 41.0 2.7 20 3-22 12-31 (215)
291 2pcj_A ABC transporter, lipopr 97.0 0.00052 1.8E-08 41.7 3.1 21 3-23 33-53 (224)
292 1np6_A Molybdopterin-guanine d 97.0 0.00046 1.6E-08 40.7 2.8 20 3-22 9-28 (174)
293 2rcn_A Probable GTPase ENGC; Y 97.0 0.0004 1.4E-08 45.3 2.7 22 3-24 218-239 (358)
294 1gtv_A TMK, thymidylate kinase 97.0 0.00014 4.8E-09 43.0 0.5 22 1-22 1-22 (214)
295 2yv5_A YJEQ protein; hydrolase 97.0 0.00064 2.2E-08 43.0 3.5 21 3-24 168-188 (302)
296 1u0l_A Probable GTPase ENGC; p 97.0 0.00051 1.7E-08 43.4 3.0 22 3-24 172-193 (301)
297 1ixz_A ATP-dependent metallopr 97.0 0.00047 1.6E-08 42.0 2.8 21 3-23 52-72 (254)
298 2cbz_A Multidrug resistance-as 97.0 0.00041 1.4E-08 42.5 2.5 21 3-23 34-54 (237)
299 1b0u_A Histidine permease; ABC 97.0 0.00042 1.4E-08 43.1 2.6 21 3-23 35-55 (262)
300 2onk_A Molybdate/tungstate ABC 97.0 0.00067 2.3E-08 41.8 3.4 21 3-23 27-47 (240)
301 1sgw_A Putative ABC transporte 97.0 0.00045 1.5E-08 41.9 2.6 21 3-23 38-58 (214)
302 1gvn_B Zeta; postsegregational 97.0 0.00041 1.4E-08 43.6 2.4 20 3-22 36-55 (287)
303 2eyu_A Twitching motility prot 97.0 0.00049 1.7E-08 42.8 2.7 20 3-22 28-47 (261)
304 3gfo_A Cobalt import ATP-bindi 96.9 0.00047 1.6E-08 43.3 2.6 21 3-23 37-57 (275)
305 2vli_A Antibiotic resistance p 96.9 0.00028 9.6E-09 40.7 1.5 21 2-22 7-27 (183)
306 2zu0_C Probable ATP-dependent 96.9 0.00055 1.9E-08 42.7 2.8 21 3-23 49-69 (267)
307 2ff7_A Alpha-hemolysin translo 96.9 0.00067 2.3E-08 41.9 3.1 21 3-23 38-58 (247)
308 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00056 1.9E-08 42.2 2.7 21 3-23 32-52 (250)
309 2cvh_A DNA repair and recombin 96.9 0.00057 1.9E-08 40.4 2.7 20 3-22 23-42 (220)
310 2olj_A Amino acid ABC transpor 96.9 0.00052 1.8E-08 42.9 2.6 21 3-23 53-73 (263)
311 1n0w_A DNA repair protein RAD5 96.9 0.00059 2E-08 40.9 2.8 21 3-23 27-47 (243)
312 1mv5_A LMRA, multidrug resista 96.9 0.00069 2.4E-08 41.6 3.1 21 3-23 31-51 (243)
313 1g6h_A High-affinity branched- 96.9 0.00071 2.4E-08 41.9 3.1 21 3-23 36-56 (257)
314 2qen_A Walker-type ATPase; unk 96.9 0.00058 2E-08 42.8 2.8 21 3-23 34-54 (350)
315 2qi9_C Vitamin B12 import ATP- 96.9 0.00054 1.8E-08 42.4 2.6 21 3-23 29-49 (249)
316 1jjv_A Dephospho-COA kinase; P 96.9 0.00061 2.1E-08 40.3 2.7 21 2-22 4-24 (206)
317 4g1u_C Hemin import ATP-bindin 96.9 0.00074 2.5E-08 42.2 3.2 21 3-23 40-60 (266)
318 2ze6_A Isopentenyl transferase 96.9 0.00062 2.1E-08 42.0 2.8 22 1-22 1-23 (253)
319 1tq4_A IIGP1, interferon-induc 96.9 0.0012 4E-08 43.8 4.2 22 3-24 72-93 (413)
320 2pze_A Cystic fibrosis transme 96.9 0.00079 2.7E-08 41.0 3.2 21 3-23 37-57 (229)
321 2ghi_A Transport protein; mult 96.9 0.00056 1.9E-08 42.5 2.5 21 3-23 49-69 (260)
322 1ji0_A ABC transporter; ATP bi 96.9 0.00077 2.6E-08 41.3 3.1 21 3-23 35-55 (240)
323 1ltq_A Polynucleotide kinase; 96.9 0.00073 2.5E-08 42.1 3.0 20 3-22 5-24 (301)
324 1ukz_A Uridylate kinase; trans 96.9 0.0005 1.7E-08 40.5 2.2 20 3-22 18-37 (203)
325 2ixe_A Antigen peptide transpo 96.9 0.00078 2.7E-08 42.1 3.1 21 3-23 48-68 (271)
326 2fna_A Conserved hypothetical 96.9 0.00062 2.1E-08 42.7 2.7 21 3-23 33-53 (357)
327 2w58_A DNAI, primosome compone 96.9 0.00069 2.4E-08 39.8 2.7 20 3-22 57-76 (202)
328 1rj9_A FTSY, signal recognitio 96.9 0.00064 2.2E-08 43.3 2.7 19 3-21 105-123 (304)
329 1lv7_A FTSH; alpha/beta domain 96.9 0.00068 2.3E-08 41.4 2.8 20 3-22 48-67 (257)
330 2ihy_A ABC transporter, ATP-bi 96.9 0.00083 2.8E-08 42.2 3.2 21 3-23 50-70 (279)
331 2yvu_A Probable adenylyl-sulfa 96.9 0.00074 2.5E-08 39.3 2.8 20 3-22 16-35 (186)
332 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00087 3E-08 43.8 3.3 21 3-23 33-53 (359)
333 1iy2_A ATP-dependent metallopr 96.8 0.00071 2.4E-08 41.9 2.8 21 3-23 76-96 (278)
334 1vpl_A ABC transporter, ATP-bi 96.8 0.00087 3E-08 41.6 3.2 21 3-23 44-64 (256)
335 1qf9_A UMP/CMP kinase, protein 96.8 0.00073 2.5E-08 39.1 2.7 20 3-22 9-28 (194)
336 3b85_A Phosphate starvation-in 96.8 0.00048 1.6E-08 41.6 1.9 21 3-23 25-45 (208)
337 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00056 1.9E-08 42.2 2.2 20 3-22 7-26 (260)
338 2x8a_A Nuclear valosin-contain 96.8 0.00071 2.4E-08 42.2 2.7 20 3-22 47-66 (274)
339 2yz2_A Putative ABC transporte 96.8 0.00065 2.2E-08 42.3 2.5 21 3-23 36-56 (266)
340 3aez_A Pantothenate kinase; tr 96.8 0.00072 2.5E-08 43.1 2.8 20 3-22 93-112 (312)
341 2qby_A CDC6 homolog 1, cell di 96.8 0.00072 2.5E-08 42.8 2.7 20 3-22 48-67 (386)
342 1cr0_A DNA primase/helicase; R 96.8 0.00071 2.4E-08 42.2 2.6 21 3-23 38-58 (296)
343 2v9p_A Replication protein E1; 96.8 0.00071 2.4E-08 43.2 2.7 19 3-21 129-147 (305)
344 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00052 1.8E-08 44.7 2.0 20 2-21 35-54 (362)
345 2pjz_A Hypothetical protein ST 96.8 0.00094 3.2E-08 41.7 3.1 21 3-23 33-53 (263)
346 2qt1_A Nicotinamide riboside k 96.8 0.00081 2.8E-08 39.8 2.7 21 3-23 24-44 (207)
347 3b9q_A Chloroplast SRP recepto 96.8 0.00079 2.7E-08 42.8 2.8 20 3-22 103-122 (302)
348 1in4_A RUVB, holliday junction 96.8 0.00078 2.7E-08 43.0 2.7 21 3-23 54-74 (334)
349 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.00084 2.9E-08 40.7 2.8 20 3-22 42-61 (262)
350 3n70_A Transport activator; si 96.8 0.00096 3.3E-08 37.6 2.8 23 2-24 26-48 (145)
351 2nq2_C Hypothetical ABC transp 96.8 0.001 3.4E-08 41.2 3.1 21 3-23 34-54 (253)
352 3h4m_A Proteasome-activating n 96.8 0.0008 2.7E-08 41.5 2.7 21 3-23 54-74 (285)
353 2dr3_A UPF0273 protein PH0284; 96.8 0.00084 2.9E-08 40.3 2.7 20 3-22 26-45 (247)
354 3e70_C DPA, signal recognition 96.8 0.00084 2.9E-08 43.2 2.8 20 3-22 132-151 (328)
355 2pez_A Bifunctional 3'-phospho 96.8 0.0007 2.4E-08 39.2 2.2 21 2-22 7-27 (179)
356 1z47_A CYSA, putative ABC-tran 96.8 0.0011 3.8E-08 43.1 3.4 21 3-23 44-64 (355)
357 1ofh_A ATP-dependent HSL prote 96.8 0.00094 3.2E-08 41.3 2.9 20 3-22 53-72 (310)
358 1lw7_A Transcriptional regulat 96.8 0.00063 2.1E-08 43.9 2.1 21 2-22 172-192 (365)
359 4e22_A Cytidylate kinase; P-lo 96.7 0.0009 3.1E-08 41.1 2.7 19 3-21 30-48 (252)
360 1bif_A 6-phosphofructo-2-kinas 96.7 0.00066 2.3E-08 45.2 2.2 58 2-60 41-98 (469)
361 2jeo_A Uridine-cytidine kinase 96.7 0.00094 3.2E-08 40.7 2.7 20 3-22 28-47 (245)
362 2it1_A 362AA long hypothetical 96.7 0.0012 4.2E-08 43.0 3.4 21 3-23 32-52 (362)
363 3q5d_A Atlastin-1; G protein, 96.7 0.0018 6E-08 43.4 4.2 20 3-22 70-89 (447)
364 2kjq_A DNAA-related protein; s 96.7 0.00054 1.9E-08 39.2 1.6 20 3-22 39-58 (149)
365 2yyz_A Sugar ABC transporter, 96.7 0.0012 4.2E-08 43.0 3.4 21 3-23 32-52 (359)
366 2f1r_A Molybdopterin-guanine d 96.7 0.00039 1.3E-08 40.9 0.9 20 3-22 5-24 (171)
367 2qm8_A GTPase/ATPase; G protei 96.7 0.00095 3.2E-08 42.9 2.8 19 3-21 58-76 (337)
368 1rz3_A Hypothetical protein rb 96.7 0.001 3.5E-08 39.4 2.7 20 3-22 25-44 (201)
369 3b9p_A CG5977-PA, isoform A; A 96.7 0.00094 3.2E-08 41.4 2.7 20 3-22 57-76 (297)
370 1nlf_A Regulatory protein REPA 96.7 0.00096 3.3E-08 41.4 2.6 20 3-22 33-52 (279)
371 1g29_1 MALK, maltose transport 96.7 0.0013 4.4E-08 43.0 3.4 21 3-23 32-52 (372)
372 3rlf_A Maltose/maltodextrin im 96.7 0.0013 4.6E-08 43.2 3.4 21 3-23 32-52 (381)
373 3syl_A Protein CBBX; photosynt 96.7 0.001 3.5E-08 41.4 2.7 19 3-21 70-88 (309)
374 1l8q_A Chromosomal replication 96.7 0.001 3.6E-08 41.9 2.8 20 3-22 40-59 (324)
375 1v43_A Sugar-binding transport 96.7 0.0014 4.6E-08 43.0 3.4 21 3-23 40-60 (372)
376 3p32_A Probable GTPase RV1496/ 96.7 0.00099 3.4E-08 42.9 2.8 21 2-22 81-101 (355)
377 3kta_A Chromosome segregation 96.7 0.0011 3.9E-08 38.3 2.8 19 3-21 29-47 (182)
378 2bbs_A Cystic fibrosis transme 96.7 0.00093 3.2E-08 42.3 2.5 21 3-23 67-87 (290)
379 1uf9_A TT1252 protein; P-loop, 96.7 0.00091 3.1E-08 39.1 2.2 21 3-23 11-31 (203)
380 1fnn_A CDC6P, cell division co 96.7 0.0012 4E-08 42.1 2.8 21 3-23 47-67 (389)
381 2p5t_B PEZT; postsegregational 96.6 0.0005 1.7E-08 42.2 1.1 20 3-22 35-54 (253)
382 1xjc_A MOBB protein homolog; s 96.6 0.0013 4.4E-08 38.7 2.8 20 3-22 7-26 (169)
383 2vp4_A Deoxynucleoside kinase; 96.6 0.00079 2.7E-08 40.7 1.9 21 3-23 23-43 (230)
384 2xtz_A Guanine nucleotide-bind 96.6 0.00087 3E-08 43.5 2.2 21 1-21 10-30 (354)
385 1d2n_A N-ethylmaleimide-sensit 96.6 0.0012 4.2E-08 40.6 2.7 21 3-23 67-87 (272)
386 1m7g_A Adenylylsulfate kinase; 96.6 0.0013 4.4E-08 39.2 2.7 20 3-22 28-47 (211)
387 3szr_A Interferon-induced GTP- 96.6 0.0011 3.9E-08 45.6 2.7 24 3-26 48-71 (608)
388 2r62_A Cell division protease 96.6 0.00094 3.2E-08 40.9 2.1 20 3-22 47-66 (268)
389 2og2_A Putative signal recogni 96.6 0.0012 4.3E-08 43.0 2.8 20 3-22 160-179 (359)
390 3umf_A Adenylate kinase; rossm 96.6 0.0013 4.5E-08 40.0 2.7 20 3-22 32-51 (217)
391 2v1u_A Cell division control p 96.6 0.0011 3.9E-08 42.0 2.5 20 3-22 47-66 (387)
392 1vht_A Dephospho-COA kinase; s 96.6 0.0011 3.6E-08 39.6 2.2 20 3-22 7-26 (218)
393 3gd7_A Fusion complex of cysti 96.6 0.0012 4.2E-08 43.4 2.7 20 3-22 50-69 (390)
394 1zuh_A Shikimate kinase; alpha 96.6 0.0015 5.1E-08 37.3 2.8 20 3-22 10-29 (168)
395 1sq5_A Pantothenate kinase; P- 96.6 0.0013 4.6E-08 41.5 2.7 20 3-22 83-102 (308)
396 3uk6_A RUVB-like 2; hexameric 96.6 0.0013 4.4E-08 41.9 2.7 21 3-23 73-93 (368)
397 3d31_A Sulfate/molybdate ABC t 96.6 0.0011 3.7E-08 43.0 2.3 21 3-23 29-49 (348)
398 4eaq_A DTMP kinase, thymidylat 96.6 0.0015 5E-08 39.8 2.8 20 3-22 29-48 (229)
399 3t15_A Ribulose bisphosphate c 96.6 0.0014 4.7E-08 41.2 2.7 20 3-22 39-58 (293)
400 3jvv_A Twitching mobility prot 96.6 0.0014 4.7E-08 42.6 2.7 20 3-22 126-145 (356)
401 2yhs_A FTSY, cell division pro 96.6 0.0014 4.8E-08 44.6 2.8 20 3-22 296-315 (503)
402 1odf_A YGR205W, hypothetical 3 96.6 0.0015 5.1E-08 41.3 2.8 19 3-21 34-52 (290)
403 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0014 4.9E-08 43.9 2.8 22 2-23 140-161 (460)
404 2ewv_A Twitching motility prot 96.5 0.0014 5E-08 42.6 2.7 20 3-22 139-158 (372)
405 3pfi_A Holliday junction ATP-d 96.5 0.0016 5.5E-08 41.1 2.8 22 2-23 57-78 (338)
406 3nwj_A ATSK2; P loop, shikimat 96.5 0.0017 5.6E-08 40.3 2.8 21 2-22 50-70 (250)
407 3r20_A Cytidylate kinase; stru 96.5 0.0016 5.6E-08 40.1 2.8 21 2-22 11-31 (233)
408 4fcw_A Chaperone protein CLPB; 96.5 0.0016 5.4E-08 40.5 2.7 20 3-22 50-69 (311)
409 2gza_A Type IV secretion syste 96.5 0.0014 4.9E-08 42.4 2.6 21 3-23 178-198 (361)
410 3cf0_A Transitional endoplasmi 96.5 0.0016 5.3E-08 41.0 2.7 21 3-23 52-72 (301)
411 2qby_B CDC6 homolog 3, cell di 96.5 0.0016 5.4E-08 41.5 2.7 20 3-22 48-67 (384)
412 3tqc_A Pantothenate kinase; bi 96.5 0.0017 5.7E-08 41.8 2.8 20 3-22 95-114 (321)
413 3tui_C Methionine import ATP-b 96.5 0.0022 7.7E-08 41.9 3.4 21 3-23 57-77 (366)
414 3pxg_A Negative regulator of g 96.5 0.0014 4.7E-08 43.8 2.4 20 3-22 204-223 (468)
415 1hqc_A RUVB; extended AAA-ATPa 96.5 0.0016 5.4E-08 40.7 2.5 21 2-22 40-60 (324)
416 2qmh_A HPR kinase/phosphorylas 96.5 0.0016 5.6E-08 39.6 2.5 21 3-23 37-57 (205)
417 2bjv_A PSP operon transcriptio 96.5 0.002 6.8E-08 39.4 2.9 23 2-24 31-53 (265)
418 3ake_A Cytidylate kinase; CMP 96.5 0.0023 7.7E-08 37.5 3.0 20 3-22 5-24 (208)
419 1um8_A ATP-dependent CLP prote 96.5 0.0019 6.6E-08 41.5 2.9 21 2-22 74-94 (376)
420 1yrb_A ATP(GTP)binding protein 96.4 0.0019 6.5E-08 39.3 2.7 19 3-21 17-35 (262)
421 3nh6_A ATP-binding cassette SU 96.4 0.00099 3.4E-08 42.5 1.4 20 3-22 83-102 (306)
422 2zts_A Putative uncharacterize 96.4 0.0021 7.1E-08 38.5 2.8 19 3-21 33-51 (251)
423 1sxj_E Activator 1 40 kDa subu 96.4 0.0015 5.2E-08 41.3 2.2 20 3-22 39-58 (354)
424 1oxx_K GLCV, glucose, ABC tran 96.4 0.0011 3.8E-08 43.0 1.6 21 3-23 34-54 (353)
425 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0018 6.2E-08 41.5 2.5 21 3-23 174-194 (330)
426 1sxj_D Activator 1 41 kDa subu 96.4 0.002 6.9E-08 40.6 2.7 20 3-22 61-80 (353)
427 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.002 6.7E-08 41.0 2.7 21 3-23 48-68 (322)
428 3zvl_A Bifunctional polynucleo 96.4 0.0019 6.6E-08 42.5 2.7 20 3-22 261-280 (416)
429 3eie_A Vacuolar protein sortin 96.4 0.002 6.9E-08 40.7 2.7 21 3-23 54-74 (322)
430 2obl_A ESCN; ATPase, hydrolase 96.4 0.0019 6.5E-08 41.8 2.6 22 3-24 74-95 (347)
431 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0027 9.2E-08 36.2 2.8 18 4-21 27-44 (149)
432 1sxj_C Activator 1 40 kDa subu 96.3 0.0022 7.6E-08 40.7 2.7 21 3-23 49-69 (340)
433 1nij_A Hypothetical protein YJ 96.3 0.0017 5.8E-08 41.3 2.1 21 3-23 7-27 (318)
434 2dpy_A FLII, flagellum-specifi 96.3 0.0021 7.2E-08 42.8 2.6 21 3-23 160-180 (438)
435 1pzn_A RAD51, DNA repair and r 96.3 0.0023 8E-08 41.3 2.6 21 3-23 134-154 (349)
436 3co5_A Putative two-component 96.3 0.0014 4.6E-08 37.0 1.4 22 2-23 29-50 (143)
437 2px0_A Flagellar biosynthesis 96.3 0.0024 8.2E-08 40.4 2.6 19 3-21 108-126 (296)
438 3a8t_A Adenylate isopentenyltr 96.3 0.0027 9.1E-08 41.3 2.9 21 3-23 43-63 (339)
439 3exa_A TRNA delta(2)-isopenten 96.3 0.0028 9.4E-08 41.0 2.9 21 3-23 6-26 (322)
440 1z6t_A APAF-1, apoptotic prote 96.3 0.0025 8.7E-08 43.0 2.9 21 3-23 150-170 (591)
441 3lda_A DNA repair protein RAD5 96.3 0.0025 8.4E-08 42.1 2.6 19 3-21 181-199 (400)
442 2r44_A Uncharacterized protein 96.3 0.0018 6E-08 40.9 1.9 21 2-22 48-68 (331)
443 3hws_A ATP-dependent CLP prote 96.3 0.0029 1E-07 40.5 2.9 22 2-23 53-74 (363)
444 2f6r_A COA synthase, bifunctio 96.3 0.0021 7E-08 40.2 2.1 20 3-22 78-97 (281)
445 3crm_A TRNA delta(2)-isopenten 96.2 0.0028 9.6E-08 40.9 2.8 20 3-22 8-27 (323)
446 1c9k_A COBU, adenosylcobinamid 96.2 0.0031 1.1E-07 37.5 2.8 21 3-23 2-22 (180)
447 1uj2_A Uridine-cytidine kinase 96.2 0.0022 7.6E-08 39.2 2.2 20 3-22 25-44 (252)
448 1p9r_A General secretion pathw 96.2 0.0027 9.2E-08 42.1 2.7 20 3-22 170-189 (418)
449 3d8b_A Fidgetin-like protein 1 96.2 0.0028 9.5E-08 40.8 2.7 21 3-23 120-140 (357)
450 4fid_A G protein alpha subunit 96.2 0.0022 7.4E-08 41.6 2.2 20 2-21 7-26 (340)
451 1vma_A Cell division protein F 96.2 0.0029 1E-07 40.3 2.8 19 3-21 107-125 (306)
452 2h92_A Cytidylate kinase; ross 96.2 0.0037 1.2E-07 37.1 3.0 21 2-22 5-25 (219)
453 2qp9_X Vacuolar protein sortin 96.2 0.0028 9.7E-08 40.8 2.7 21 3-23 87-107 (355)
454 1tf7_A KAIC; homohexamer, hexa 96.2 0.0026 9E-08 42.9 2.6 18 3-20 42-59 (525)
455 3d3q_A TRNA delta(2)-isopenten 96.2 0.003 1E-07 41.0 2.7 20 3-22 10-29 (340)
456 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0043 1.5E-07 42.2 3.6 22 3-24 50-71 (538)
457 2p67_A LAO/AO transport system 96.2 0.003 1E-07 40.5 2.7 19 3-21 59-77 (341)
458 1w5s_A Origin recognition comp 96.2 0.0023 7.8E-08 41.1 2.1 20 3-22 53-74 (412)
459 3tqf_A HPR(Ser) kinase; transf 96.2 0.0033 1.1E-07 37.6 2.6 21 3-23 19-39 (181)
460 1q3t_A Cytidylate kinase; nucl 96.2 0.0033 1.1E-07 38.0 2.7 21 2-22 18-38 (236)
461 3gmt_A Adenylate kinase; ssgci 96.2 0.0034 1.2E-07 38.7 2.7 22 1-22 9-30 (230)
462 2qgz_A Helicase loader, putati 96.2 0.0033 1.1E-07 39.8 2.7 20 3-22 155-174 (308)
463 3vfd_A Spastin; ATPase, microt 96.1 0.0033 1.1E-07 40.8 2.7 21 3-23 151-171 (389)
464 1jr3_A DNA polymerase III subu 96.1 0.0035 1.2E-07 39.7 2.8 20 3-22 41-60 (373)
465 3foz_A TRNA delta(2)-isopenten 96.1 0.0035 1.2E-07 40.3 2.8 21 3-23 13-33 (316)
466 1iqp_A RFCS; clamp loader, ext 96.1 0.0037 1.3E-07 38.8 2.8 21 3-23 49-69 (327)
467 1svm_A Large T antigen; AAA+ f 96.1 0.0035 1.2E-07 41.1 2.7 20 3-22 172-191 (377)
468 3m6a_A ATP-dependent protease 96.1 0.0034 1.2E-07 42.7 2.7 20 3-22 111-130 (543)
469 2z4s_A Chromosomal replication 96.1 0.0038 1.3E-07 41.4 2.8 21 2-22 132-152 (440)
470 1g8p_A Magnesium-chelatase 38 96.1 0.0017 5.8E-08 40.9 1.1 20 3-22 48-67 (350)
471 3ohm_A Guanine nucleotide-bind 96.1 0.0035 1.2E-07 40.4 2.5 20 2-21 9-28 (327)
472 1qvr_A CLPB protein; coiled co 96.1 0.0039 1.3E-07 44.3 3.0 21 2-22 193-213 (854)
473 3pvs_A Replication-associated 96.1 0.0038 1.3E-07 41.6 2.7 21 3-23 53-73 (447)
474 3euj_A Chromosome partition pr 96.0 0.0039 1.3E-07 42.2 2.8 20 3-22 32-51 (483)
475 2a5y_B CED-4; apoptosis; HET: 96.0 0.0049 1.7E-07 41.7 3.3 20 3-22 155-174 (549)
476 1cip_A Protein (guanine nucleo 96.0 0.0031 1.1E-07 40.9 2.2 20 2-21 34-53 (353)
477 1sxj_B Activator 1 37 kDa subu 96.0 0.0043 1.5E-07 38.5 2.7 21 3-23 45-65 (323)
478 2chq_A Replication factor C sm 96.0 0.0043 1.5E-07 38.4 2.7 20 3-22 41-60 (319)
479 2oap_1 GSPE-2, type II secreti 96.0 0.0041 1.4E-07 42.2 2.7 21 3-23 263-283 (511)
480 3j16_B RLI1P; ribosome recycli 96.0 0.0063 2.2E-07 42.1 3.6 22 3-24 106-127 (608)
481 2ocp_A DGK, deoxyguanosine kin 96.0 0.0037 1.3E-07 37.9 2.2 21 2-22 4-24 (241)
482 1p5z_B DCK, deoxycytidine kina 96.0 0.0019 6.4E-08 39.7 0.9 20 3-22 27-46 (263)
483 1tf7_A KAIC; homohexamer, hexa 96.0 0.0044 1.5E-07 41.8 2.7 21 3-23 284-304 (525)
484 3b5x_A Lipid A export ATP-bind 96.0 0.0056 1.9E-07 41.8 3.3 21 3-23 372-392 (582)
485 3hr8_A Protein RECA; alpha and 95.9 0.0044 1.5E-07 40.3 2.6 20 3-22 64-83 (356)
486 3bh0_A DNAB-like replicative h 95.9 0.0048 1.7E-07 39.1 2.8 20 3-22 71-90 (315)
487 2zan_A Vacuolar protein sortin 95.9 0.0047 1.6E-07 41.0 2.7 21 3-23 170-190 (444)
488 2grj_A Dephospho-COA kinase; T 95.9 0.004 1.4E-07 37.1 2.2 22 2-23 14-35 (192)
489 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0046 1.6E-07 43.2 2.8 20 3-22 210-229 (758)
490 1sxj_A Activator 1 95 kDa subu 95.9 0.0047 1.6E-07 41.6 2.7 21 3-23 80-100 (516)
491 1ojl_A Transcriptional regulat 95.9 0.0057 1.9E-07 38.6 3.0 21 2-22 27-47 (304)
492 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0049 1.7E-07 39.9 2.7 21 3-23 126-146 (331)
493 3pxi_A Negative regulator of g 95.9 0.0041 1.4E-07 43.6 2.4 20 3-22 204-223 (758)
494 2orw_A Thymidine kinase; TMTK, 95.9 0.0055 1.9E-07 36.1 2.6 19 3-21 6-24 (184)
495 3b60_A Lipid A export ATP-bind 95.9 0.006 2E-07 41.7 3.1 21 3-23 372-392 (582)
496 1ko7_A HPR kinase/phosphatase; 95.9 0.0052 1.8E-07 39.5 2.7 20 3-22 147-166 (314)
497 4b4t_K 26S protease regulatory 95.9 0.0052 1.8E-07 40.9 2.7 20 3-22 209-228 (428)
498 3bk7_A ABC transporter ATP-bin 95.8 0.0069 2.4E-07 41.9 3.4 22 3-24 120-141 (607)
499 3ozx_A RNAse L inhibitor; ATP 95.8 0.007 2.4E-07 41.3 3.4 22 3-24 28-49 (538)
500 3qks_A DNA double-strand break 95.8 0.0064 2.2E-07 36.2 2.8 18 3-20 26-43 (203)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.94 E-value=2.4e-27 Score=145.31 Aligned_cols=75 Identities=27% Similarity=0.526 Sum_probs=62.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|++||+++||||||+.||+.+.|++.|.||++.++..+.+.+++..++++||||+|+++|+. +++.||++++++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~--l~~~~~~~a~~~ 89 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS--LIPSYIRDSAAA 89 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG--GHHHHHTTCSEE
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh--HHHHHhccccEE
Confidence 589999999999999999999999999999999999999999999999999999999999999 999999999874
No 2
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.84 E-value=9.5e-21 Score=109.46 Aligned_cols=76 Identities=26% Similarity=0.503 Sum_probs=70.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+++||||||++++..+.+...+.||++.++..+.+.+++..+.+.+|||+|+++++. +++.+++++|++
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~ 81 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA--ITKAYYRGAQAC 81 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC--CCHHHHTTCCEE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH--HHHHHhcCCCEE
Confidence 3689999999999999999999999989999999999888889999999999999999999999 999999998863
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.84 E-value=3.5e-21 Score=116.72 Aligned_cols=75 Identities=17% Similarity=0.302 Sum_probs=67.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+++||||||+++|..+.|...+.||++.++ .+.+.+++..+.+.||||+|+++|+. +++.+++++|++
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~~ 102 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDN--VRPLCYSDSDAV 102 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTT--TGGGGCTTCSEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHH--HHHHHcCCCeEE
Confidence 3689999999999999999999999999999998877 67778888999999999999999999 999999999863
No 4
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=2e-21 Score=113.47 Aligned_cols=75 Identities=28% Similarity=0.515 Sum_probs=69.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECC-EEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQN-RGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||++++..+.+...+.||++.++..+.+.+++ ..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--~~~~~~~~~d~~ 83 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK--MLDKYIYGAQGV 83 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT--THHHHHTTCSEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc--hhhHHHhhCCEE
Confidence 689999999999999999999999888899999888888888876 689999999999999999 999999999863
No 5
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=115.70 Aligned_cols=75 Identities=29% Similarity=0.531 Sum_probs=61.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.|...+.||++.++..+.+.+++..+.+.+||++|+++|+. +++.+++++|++
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~i 105 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT--ITQSYYRSANGA 105 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHH--HHHHHHTTCSEE
T ss_pred EEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHH--HHHHHHhhCCEE
Confidence 689999999999999999999999888999999998888889999999999999999999999 999999999863
No 6
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=109.14 Aligned_cols=75 Identities=25% Similarity=0.434 Sum_probs=70.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.|+.+.++....+.+++..+.+.+||++|++++.. +++.+++++|++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--~~~~~~~~~d~~ 79 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS--LAPXYYRNAQAA 79 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--GHHHHHTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh--hhhhhhccCcEE
Confidence 689999999999999999999999988999999998888888999999999999999999999 999999998863
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=5.2e-21 Score=115.34 Aligned_cols=75 Identities=32% Similarity=0.491 Sum_probs=70.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||++++..+.+...+.||++.++..+.+.+++..+.+.+|||+|+++|+. +++.+++++|++
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~--~~~~~~~~~d~~ 102 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS--ITQSYYRSANAL 102 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH--HHGGGSTTCSEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH--HHHHHHhcCCEE
Confidence 589999999999999999999999989999999999888999999999999999999999999 999999999863
No 8
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.84 E-value=7.4e-21 Score=114.33 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=66.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||+.+|..+.|...+.||++..+ ...+.+++..+.+.+|||+|+++|+. +++.+++++|++
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 84 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSR--LRPLSYRGADIF 84 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC----CGGGTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHH--HHHhhccCCCEE
Confidence 589999999999999999999999989999998766 66778889999999999999999999 999999999863
No 9
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=1.6e-20 Score=112.42 Aligned_cols=74 Identities=28% Similarity=0.565 Sum_probs=70.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.||++.++....+.+++..+.+.+|||+|+++|+. +++.+++++|+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~ 83 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT--ITSSYYRGSHG 83 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC--CCGGGGTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH--HHHHhccCCCE
Confidence 589999999999999999999999989999999999888889999999999999999999999 99999999886
No 10
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.84 E-value=8.2e-21 Score=112.17 Aligned_cols=74 Identities=16% Similarity=0.310 Sum_probs=67.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||++++..+.|...+.||++.++ .+.+.+++..+.+.+||++|+++|+. +++.+++++|++
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 82 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDN--VRPLSYPDSDAV 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTT--TGGGGCTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhh--hHHhhcCCCcEE
Confidence 689999999999999999999999988999998776 56778888999999999999999999 999999999863
No 11
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.83 E-value=1.4e-20 Score=111.82 Aligned_cols=75 Identities=19% Similarity=0.380 Sum_probs=68.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+++||||||++++..+.+...+.||++.++ ...+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 98 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDR--LRPLSYADSDVV 98 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTT--TGGGGCTTCSEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEEECCCcHHHHH--HhHhhccCCcEE
Confidence 3689999999999999999999999999999998777 56778899999999999999999999 999999999863
No 12
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.83 E-value=7.4e-21 Score=110.24 Aligned_cols=74 Identities=24% Similarity=0.399 Sum_probs=62.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+...+.||++.++..+.+.+++..+.+.+||++|++++.. +++.+++++|+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~ 81 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA--LGPIYYRDSNG 81 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh--hHHHHhccCCE
Confidence 689999999999999999999999988999999998888888999999999999999999999 99999999886
No 13
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.83 E-value=1.4e-20 Score=111.76 Aligned_cols=75 Identities=24% Similarity=0.444 Sum_probs=65.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++.++..+.+.++++.+.+.+||++|+++|+. +++.+++++|++
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~i 97 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS--ITRSYYRGAAGA 97 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC--CCHHHHTTCSEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh--hHHHHhccCCEE
Confidence 689999999999999999999999888999999998888889999999999999999999999 999999998863
No 14
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=110.88 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=62.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||+++|..+.|...+.||++.++ ...+.+++..+.+++|||+|+++|+. + ..|++++|+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~-~~~~~~~~~ 94 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRN--C-ERYLNWAHA 94 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCC--T-HHHHTTCSE
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchh--H-HHHHhhCCE
Confidence 689999999999999999999999999999998777 56778899999999999999999998 7 579998886
No 15
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.3e-20 Score=110.32 Aligned_cols=74 Identities=28% Similarity=0.462 Sum_probs=70.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.||++.++..+.+.+++..+.+.+|||+|++++.. +++.+++++|+
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~ 90 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT--LTPSYYRGAQG 90 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--SHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh--hhHHHhccCCE
Confidence 689999999999999999999999989999999999888889999999999999999999999 99999999886
No 16
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.83 E-value=2.2e-20 Score=107.92 Aligned_cols=75 Identities=21% Similarity=0.377 Sum_probs=70.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+.+.+.|+++.++..+.+.+++..+.+.+||++|+++++. +++.+++++|++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--~~~~~~~~~d~~ 82 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS--LAPMYYRGAQAA 82 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--GHHHHHTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh--hhHHhccCCCEE
Confidence 689999999999999999999999988999999998888888999999999999999999999 999999998863
No 17
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=111.70 Aligned_cols=74 Identities=20% Similarity=0.353 Sum_probs=60.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||+.++..+.|...+.||++..+ ...+.+++..+.+.+|||+|+++|+. +++.+++++|++
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 95 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDK--LRPLCYTNTDIF 95 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSS--SGGGGGTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHH--HhHhhcCCCcEE
Confidence 589999999999999999999999989999998666 67778899999999999999999999 999999999863
No 18
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.83 E-value=1.4e-20 Score=109.81 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=66.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+...+.||++.++....+.+++..+.+.+||++|+++++. ++..+++++|+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~ 82 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS--LRTPFYRGSDC 82 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHH--HHGGGGTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhh--hHHHHHhcCCE
Confidence 589999999999999999999999988999999998888889999999999999999999999 99999999886
No 19
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.83 E-value=3.2e-20 Score=108.83 Aligned_cols=74 Identities=22% Similarity=0.406 Sum_probs=67.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||+.++..+.+...+.||++..+ ...+.+++..+.+.+|||+|+++|+. +++.+++++|++
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 80 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDR--LRPLSYPQTDVS 80 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTT--TGGGGCTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHH--HHHHhccCCcEE
Confidence 689999999999999999999999989999997666 66778899999999999999999999 999999998863
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.83 E-value=3.2e-20 Score=108.87 Aligned_cols=74 Identities=24% Similarity=0.343 Sum_probs=68.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||.+..+ .+.+.+++..+.+.+||++|+++|+. +++.+++++|++
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~ 81 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSI--FPQTYSIDINGY 81 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCC--CCGGGTTTCSEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhH--HHHHHHhcCCEE
Confidence 589999999999999999999999999999998877 78888999999999999999999999 999999998863
No 21
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.1e-20 Score=110.97 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=67.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.|...+.||++..+ .+.+.+++..+.+.+||++|+++|+. +++.+++++|++
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~--~~~~~~~~~d~~ 93 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDR--LRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTT--TGGGGCTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhH--HHHHhcCCCCEE
Confidence 589999999999999999999999999999998776 66778888899999999999999999 999999999863
No 22
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.2e-20 Score=113.42 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=64.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++.++....+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~v 89 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA--ITSAYYRGAVGA 89 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC--CCGGGTTTCCEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhh--hHHHHhccCCEE
Confidence 589999999999999999999999988999999999888889999999999999999999999 999999999863
No 23
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.83 E-value=4.8e-20 Score=109.13 Aligned_cols=75 Identities=28% Similarity=0.480 Sum_probs=70.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++.++..+.+.+++..+.+.+||++|+++++. ++..+++++|++
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~i 98 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT--ITTAYYRGAMGF 98 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC--SGGGGGTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh--hHHHhccCCCEE
Confidence 689999999999999999999999888999999998888888899999999999999999999 999999998863
No 24
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.83 E-value=1.7e-20 Score=111.06 Aligned_cols=75 Identities=24% Similarity=0.468 Sum_probs=70.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC-CcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES-SAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~-~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++.++..+.+.+++..+.+.+|||+|+++|+ . +++.+++++|++
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~d~i 97 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS--MVQHYYRNVHAV 97 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTT--THHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhh--hhHHHhcCCCEE
Confidence 58999999999999999999999998899999999988889999999999999999999998 7 999999998863
No 25
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=109.69 Aligned_cols=74 Identities=27% Similarity=0.561 Sum_probs=70.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.|+.+.++....+.+++..+.+.+||++|+++++. ++..+++++|+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~ 91 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT--ITSSYYRGAHG 91 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT--THHHHHTTCSE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh--hHHHHHhhCCE
Confidence 689999999999999999999999999999999999888999999999999999999999999 99999999986
No 26
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.83 E-value=3.5e-20 Score=108.41 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=70.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.++++.++..+.+.+++..+.+.+||++|+++++. +++.+++++|++
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 88 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--LAPMYYRGAAAA 88 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG--GTHHHHTTCSEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh--hhHHHhccCCEE
Confidence 589999999999999999999999988999999998888888999999999999999999999 999999998863
No 27
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=109.60 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=69.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.+|++.++..+.+.+++..+.+.+|||+|+++++. ++..+++++|+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~ 100 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA--ITSAYYRGAVG 100 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--THHHHHTTCCE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--hhHHHhccCCE
Confidence 589999999999999999999999988999999999888888999999999999999999999 99999999986
No 28
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.83 E-value=1.4e-20 Score=113.68 Aligned_cols=74 Identities=16% Similarity=0.310 Sum_probs=67.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||+++|..+.|...+.||++.++ .+.+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~~ 103 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDN--VRPLSYPDSDAV 103 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTT--TGGGGCTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhH--HHHhhccCCCEE
Confidence 589999999999999999999999988999998776 66778888899999999999999999 999999999863
No 29
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=3.2e-20 Score=108.17 Aligned_cols=74 Identities=28% Similarity=0.567 Sum_probs=69.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.|+++.++..+.+.+++..+.+.+|||+|++++.. +++.+++++|+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--~~~~~~~~~d~ 89 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--LIPSYIRDSTV 89 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--GSHHHHHTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH--HHHHHhcCCCE
Confidence 589999999999999999999999988999999999888889999999999999999999999 99999999886
No 30
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.82 E-value=1.4e-20 Score=108.88 Aligned_cols=75 Identities=31% Similarity=0.546 Sum_probs=63.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|+++|+++||||||++++..+.+...+.||++.++....+.+++..+.+.+||++|++++.. ++..+++++|+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--~~~~~~~~~d~ 78 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT--ITTAYYRGAMG 78 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC--CCHHHHTTEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh--hHHHHhccCCE
Confidence 3689999999999999999999999888999999888888888888899999999999999999 99999999886
No 31
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=4.6e-20 Score=106.74 Aligned_cols=75 Identities=24% Similarity=0.382 Sum_probs=70.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|+++|+.+||||||++++..+.+...+.|+.+.++..+.+.+++..+.+.+|||+|++++.. +++.+++++|+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--~~~~~~~~~~~ 81 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA--LAPMYYRGSAA 81 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--GTHHHHTTCSE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhc--ccHhhCcCCCE
Confidence 3689999999999999999999999888999999998888888999999999999999999999 99999999886
No 32
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.82 E-value=1.9e-20 Score=110.14 Aligned_cols=75 Identities=25% Similarity=0.452 Sum_probs=70.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++.++....+.++++.+.+.+||++|+++++. +++.+++++|++
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~ 86 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS--VTRSYYRGAAGA 86 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHH--HHHTTSTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHH--HHHHHHhcCCEE
Confidence 589999999999999999999999988999999888888889999999999999999999999 999999998863
No 33
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.82 E-value=3e-20 Score=108.24 Aligned_cols=74 Identities=22% Similarity=0.473 Sum_probs=69.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.+|.+.++..+.+.+++..+.+.+|||+|+++++. +++.+++++|+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~ 90 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA--VTRSYYRGAAG 90 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH--HHHHHHHTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhh--hHHHHhccCCE
Confidence 589999999999999999999999888999999998888888999999999999999999999 99999999886
No 34
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=108.32 Aligned_cols=74 Identities=27% Similarity=0.480 Sum_probs=67.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+...+.|+.+.++....+.+++..+.+.+||++|++++.. ++..+++++|+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~ 84 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT--ITSTYYRGTHG 84 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS--CCGGGGTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh--hHHHHhccCCE
Confidence 689999999999999999999999888999999999888899999999999999999999999 99999999886
No 35
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.82 E-value=2.3e-21 Score=113.94 Aligned_cols=75 Identities=24% Similarity=0.500 Sum_probs=45.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||++++..+.+...+.||++.++..+.+.+++..+.+.+||++|+++|+. +++.+++++|++
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~ 84 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--ITTAYYRGAMGI 84 (183)
T ss_dssp EEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------CCTTTTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh--hHHHHHhcCCEE
Confidence 589999999999999999999999888999999998888888999999999999999999999 999999998863
No 36
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.82 E-value=5.5e-20 Score=110.12 Aligned_cols=74 Identities=19% Similarity=0.427 Sum_probs=67.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++.++ ...+.+++..+.+.+|||+|+++|+. +++.+++++|++
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~~ 100 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDR--LRPLSYPDTDVI 100 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTT--TGGGGCTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHH--HHHHhcCCCCEE
Confidence 589999999999999999999999989999998887 45678899999999999999999999 999999998863
No 37
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.82 E-value=3.3e-20 Score=110.73 Aligned_cols=74 Identities=28% Similarity=0.480 Sum_probs=69.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.||++.++..+.+.+++..+.+.+|||+|+++|+. ++..+++++|+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~ 83 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT--ITTAYYRGAMG 83 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH--HHHTTGGGCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcc--hHHHhhcCCCE
Confidence 689999999999999999999999888999999998888888999999999999999999999 99999999886
No 38
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.82 E-value=2.9e-20 Score=107.32 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=66.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+...+.||.+..+ .+.+.+++..+.+.+||++|++++.. +++.+++++|+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~--~~~~~~~~~d~ 77 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTA--MRDLYMKNGQG 77 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTT--HHHHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHH--HHHHHhccCCE
Confidence 589999999999999999999999989999998766 56777888899999999999999999 99999999886
No 39
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.82 E-value=8e-20 Score=106.62 Aligned_cols=73 Identities=16% Similarity=0.300 Sum_probs=67.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.||.+.++ .+.+.+++..+.+.+||++|+++|.. +++.+++++|+
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~--~~~~~~~~~d~ 83 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGA--MREQYMRAGHG 83 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTTTSC--CHHHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceE-EEEEEECCEEEEEEEEECCCchhhHH--HHHHHHhhCCE
Confidence 589999999999999999999999999999998877 47788899999999999999999999 99999999886
No 40
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.82 E-value=6.8e-20 Score=107.62 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=68.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++..+ ...+.+++..+.+.+||++|+++|.. +++.+++++|++
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~~ 93 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSA--MREQYMRTGDGF 93 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCS--SHHHHHHHCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHH--HHHHHHhcCCEE
Confidence 589999999999999999999999999999998877 77888999999999999999999999 999999998863
No 41
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=4.5e-20 Score=109.71 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=69.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.|+++.++..+.+.+++..+.+.+|||+|++++.. +++.+++++|+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~ 98 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS--LAPMYYRGSAA 98 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG--GTHHHHTTCSE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh--hhHHhhccCCE
Confidence 689999999999999999999999888999999998888888888999999999999999999 99999999886
No 42
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=111.75 Aligned_cols=74 Identities=26% Similarity=0.489 Sum_probs=62.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.||++.++..+.+.+++..+.+.+|||+|++++.. ++..+++++|+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~--~~~~~~~~~d~ 101 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS--ITSAYYRSAKG 101 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHH--HHHHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHH--HHHHHhcCCCE
Confidence 589999999999999999999999888999999999888899999999999999999999999 99999999886
No 43
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=111.51 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=60.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.|...+.||++.++..+.+.+++..+.+.||||+|+++|+. ++..+++++|++
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~i 104 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS--IAKSYFRKADGV 104 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHH--HHHHHHHHCSEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhh--hHHHHHhhCCEE
Confidence 589999999999999999999999888999999888888889999999999999999999999 999999998863
No 44
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=4.4e-20 Score=110.18 Aligned_cols=75 Identities=24% Similarity=0.436 Sum_probs=70.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++.++....+.+++..+.+.+|||+|++++.. ++..+++++|++
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~ 84 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS--LGVAFYRGADCC 84 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC--SCCGGGTTCSEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--hHHHHHhCCcEE
Confidence 589999999999999999999999989999999999888888899999999999999999999 999999998863
No 45
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=9.6e-20 Score=109.12 Aligned_cols=74 Identities=31% Similarity=0.539 Sum_probs=69.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||+.++..+.+...+.||++.++....+.+++..+.+.+|||+|++++.. ++..+++++|+
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~ 95 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT--ITTAYYRGAMG 95 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC--CCHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--HHHHHhccCCE
Confidence 589999999999999999999999888999999999888889999999999999999999999 99999999886
No 46
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=8.3e-20 Score=106.74 Aligned_cols=74 Identities=26% Similarity=0.498 Sum_probs=60.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+. ..+.||++.++....+.+++..+.+.+||++|+++|+. ++..+++++|+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--~~~~~~~~~d~ 86 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS--VTHAYYRDAHA 86 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGCSE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH--HHHHHccCCCE
Confidence 6899999999999999999999885 56889999998777788999999999999999999999 99999999886
No 47
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.81 E-value=7.5e-20 Score=108.07 Aligned_cols=75 Identities=23% Similarity=0.414 Sum_probs=67.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEE---------------------------------
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG--------------------------------- 48 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~--------------------------------- 48 (78)
+|+++|+.+||||||++++..+.+...+.||++.++..+.+.+++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNE 88 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCT
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccC
Confidence 58999999999999999999999999999999999888888887765
Q ss_pred ----EEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 49 ----VKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 49 ----~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+.+.+|||+|+++|.. ++..+++.+|++
T Consensus 89 ~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 120 (208)
T 3clv_A 89 NLCNIKFDIWDTAGQERYAS--IVPLYYRGATCA 120 (208)
T ss_dssp TTCEEEEEEEECTTGGGCTT--THHHHHTTCSEE
T ss_pred ccceeEEEEEECCCcHHHHH--HHHHHhcCCCEE
Confidence 8999999999999999 999999998863
No 48
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=111.69 Aligned_cols=75 Identities=24% Similarity=0.474 Sum_probs=59.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++.++..+.+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~--~~~~~~~~~d~~ 101 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS--VTRSYYRGAAGA 101 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC--CCHHHHTTCSEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH--HHHHHhccCCEE
Confidence 689999999999999999999999888999999898888889999999999999999999999 999999999863
No 49
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.81 E-value=1.1e-19 Score=108.59 Aligned_cols=74 Identities=22% Similarity=0.388 Sum_probs=66.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|++|||||||++++....+...+.||++.++....+.++++.+.+.+||++|+++++. ++..+++++++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--~~~~~~~~~~~ 80 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR--ITSAYYRGAVG 80 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC--CCHHHHTTCSE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh--hhHHHHhcCCE
Confidence 589999999999999999999999888999999998888999999999999999999999999 99999998775
No 50
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.81 E-value=1.5e-19 Score=107.80 Aligned_cols=74 Identities=22% Similarity=0.377 Sum_probs=69.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+++++|++|||||||++++....++..+.||++.++....+.++++.+.+++||++|++++.. +++.+++++++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--~~~~~~~~~~~ 104 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA--ITSAYYRGAVG 104 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC--CCHHHHTTCCE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh--hhHHHhhcCCE
Confidence 578999999999999999999999989999999999888999999999999999999999999 99999998764
No 51
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=111.88 Aligned_cols=74 Identities=18% Similarity=0.352 Sum_probs=46.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||++++..+.+...+.||++..+ ...+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~--~~~~~~~~~d~~ 109 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDR--LRPLFYPDASVL 109 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC-----------------CEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhH--HHHHHhccCCEE
Confidence 589999999999999999999999888999997665 67778899999999999999999999 999999998863
No 52
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-19 Score=108.92 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=61.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++.++ ...+.+++..+.+.+|||+|++++.. +++.+++++|++
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 100 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDR--LRPLSYPDTDVI 100 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCC-------CCEE-EEEEEETTEEEEEEEEECTTCTTCTT--TGGGGCTTCCEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceE-EEEEEECCEEEEEEEEECCCcHHHHH--HHHhhcCCCCEE
Confidence 589999999999999999999999988999998777 45578899999999999999999999 999999998863
No 53
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.80 E-value=1.3e-20 Score=110.32 Aligned_cols=75 Identities=23% Similarity=0.390 Sum_probs=50.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||+.++..+.+...+.||++..+ ...+.+++..+.+++|||+|+++|+. +++.+++++|++
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 83 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNR--LRPLSYRGADVF 83 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTT--TGGGGGTTCSEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhh--hHHhhccCCCEE
Confidence 3689999999999999999999999988999998665 44456778889999999999999999 999999998863
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.80 E-value=1.2e-19 Score=104.45 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=66.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+...+.||.+..+ .+.+.+++..+.+.+||++|++++.. +++.+++++++
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~--~~~~~~~~~~~ 77 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFAS--MRDLYIKNGQG 77 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHH--HHHHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHH--HHHHHhccCCE
Confidence 589999999999999999999999988999987554 77788999999999999999999999 99999998876
No 55
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.80 E-value=7.6e-20 Score=107.62 Aligned_cols=75 Identities=24% Similarity=0.352 Sum_probs=67.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeE-EEEEEECCE---------EEEEEEecCCCCCccCCcCchHhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFH-LKLLTIQNR---------GVKLILWDIGGKANESSAGLVKTY 71 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~i~~~~~---------~~~l~iwD~~G~~~~~~~~~~~~~ 71 (78)
+|+++|+++||||||++++..+.+...+.||++.++. .+.+.+++. .+.+.+||++|++++.. ++..+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~ 90 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS--LTTAF 90 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH--HHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH--HHHHH
Confidence 5899999999999999999999999889999998886 667777766 89999999999999999 99999
Q ss_pred hccCccC
Q psy2599 72 LSSANIS 78 (78)
Q Consensus 72 ~~~~~~~ 78 (78)
++++|++
T Consensus 91 ~~~~d~~ 97 (195)
T 3bc1_A 91 FRDAMGF 97 (195)
T ss_dssp TTTCSEE
T ss_pred HcCCCEE
Confidence 9999863
No 56
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.80 E-value=2.4e-19 Score=105.31 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=64.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|+++|+.+||||||++++..+.+...+.+|.+. .....+.+++..+.+.+|||+|++++.. +++.+++++|+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~ 78 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSA--MRDQYMRTGEG 78 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CT--THHHHHHHCSE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHH--HHHHHHhcCCE
Confidence 36899999999999999999999999889999864 4467788899999999999999999999 99999999886
No 57
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.80 E-value=1e-20 Score=112.04 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=54.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC--CCCCCCCCCCCceeEEEEEEE---CCEEEEEEEecCCCCCccCCcCchHhhhccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD--EFTRQYYPTSGPDFHLKLLTI---QNRGVKLILWDIGGKANESSAGLVKTYLSSA 75 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~--~~~~~~~~t~~~~~~~~~i~~---~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~ 75 (78)
++++++|++|||||||++++... .|...+.||++.++....+.+ ++..+.+.+|||+|+++|+. +++.|++++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~ 80 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS--THPHFMTQR 80 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT--TSHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH--hhHHHccCC
Confidence 47899999999999999999984 577778999998886666554 34678999999999999999 999999988
Q ss_pred cc
Q psy2599 76 NI 77 (78)
Q Consensus 76 ~~ 77 (78)
++
T Consensus 81 ~~ 82 (184)
T 2zej_A 81 AL 82 (184)
T ss_dssp EE
T ss_pred cE
Confidence 75
No 58
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.80 E-value=1.2e-19 Score=109.04 Aligned_cols=74 Identities=20% Similarity=0.367 Sum_probs=65.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||+.+|..+.+...+.||.+..+ ...+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~~ 105 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDR--LRPLSYPQTDVF 105 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTT--TGGGGCTTCSEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHH--HHHHHhccCCEE
Confidence 589999999999999999999999989999986544 77778899999999999999999999 999999999863
No 59
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.80 E-value=1.2e-19 Score=104.48 Aligned_cols=73 Identities=19% Similarity=0.378 Sum_probs=63.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.||.+..+ ...+.+++..+.+.+||++|++++.. +++.+++++|+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~--~~~~~~~~~d~ 78 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA--IRDNYFRSGEG 78 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHH--HHHHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHH--HHHHHhhcCCE
Confidence 589999999999999999999999888999988766 56678899999999999999999999 99999998886
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.80 E-value=4.1e-20 Score=107.95 Aligned_cols=75 Identities=24% Similarity=0.453 Sum_probs=55.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC-CEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||++.++....+.++ +..+.+.+||++|+++++. ++..+++++|++
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~ 85 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS--LGVAFYRGADCC 85 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh--hhHHHhhcCCEE
Confidence 58999999999999999999999998999999988888888777 6678999999999999999 999999998863
No 61
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=108.61 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=64.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+...+.||.+..+ ...+.+++..+.+.+|||+|+++|.. ++..+++++|++
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~ 99 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSI--LPYSFIIGVHGY 99 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCC--CCGGGTTTCCEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHH--HHHHHHhcCCEE
Confidence 589999999999999999999999999999998777 67777788889999999999999999 999999999863
No 62
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.2e-19 Score=103.85 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=66.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|+++|+.+||||||++++..+.+...+.||++..+ ...+..++..+.+.+|||+|++++.. +++.+++.+|+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~--~~~~~~~~~~~ 77 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPA--MQRLSISKGHA 77 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHH--HHHHHHHHCSE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHH--HHHHhcccCCE
Confidence 3689999999999999999999999888999998766 56677888999999999999999999 99999998876
No 63
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=106.99 Aligned_cols=73 Identities=19% Similarity=0.378 Sum_probs=67.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.||.+..+ ...+.+++..+.+.+||++|++++.. +++.+++++|+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~ 88 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA--IRDNYFRSGEG 88 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHH--HHHHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHH--HHHHHHhhCCE
Confidence 589999999999999999999999989999998766 67778899999999999999999999 99999998886
No 64
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.79 E-value=5e-20 Score=118.96 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=56.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCC---CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCc--hHhhhccCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTR---QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL--VKTYLSSAN 76 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~--~~~~~~~~~ 76 (78)
|++++|++|||||||+.++..+.++. .+.||++.++.. ++ ..++|+||||+||++|+.. . ++.|||+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~-~l~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEP-SYDSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCC-SHHHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccch-hhhhhhhccCCC
Confidence 68999999999999999988665443 367999988742 33 4589999999999999621 3 589999998
Q ss_pred cC
Q psy2599 77 IS 78 (78)
Q Consensus 77 ~~ 78 (78)
|+
T Consensus 75 ~~ 76 (331)
T 3r7w_B 75 AL 76 (331)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.79 E-value=2.8e-19 Score=104.75 Aligned_cols=73 Identities=19% Similarity=0.378 Sum_probs=66.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++++.. +++.+++++|+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~ 92 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA--IRDNYFRSGEG 92 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHH--HHHHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHH--HHHHHhccCCE
Confidence 589999999999999999999999988999988766 66778899999999999999999999 99999998886
No 66
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.79 E-value=4.2e-20 Score=111.85 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=70.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||+++|..+.+...+.||.+.++....+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 91 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG--LRDGYYIQAQCA 91 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC--CCHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH--HHHHHHhcCCEE
Confidence 689999999999999999999888888999999998888888999999999999999999999 999999998863
No 67
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.79 E-value=1.1e-20 Score=111.64 Aligned_cols=74 Identities=12% Similarity=0.049 Sum_probs=61.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCC-----------CCCCCceeEEEEE-EECCEEEEEEEecCCCCCccCCcCchH
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQY-----------YPTSGPDFHLKLL-TIQNRGVKLILWDIGGKANESSAGLVK 69 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~-----------~~t~~~~~~~~~i-~~~~~~~~l~iwD~~G~~~~~~~~~~~ 69 (78)
+|+++|+++||||||+ ++..+.+...+ .||++.++..+.+ .+++..+.+.+|||+|+++|+. +++
T Consensus 16 ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~ 92 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA--SRK 92 (198)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH--HHH
T ss_pred EEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH--HHH
Confidence 5899999999999999 67777776664 4577766655555 5678899999999999999999 999
Q ss_pred hhhccCccC
Q psy2599 70 TYLSSANIS 78 (78)
Q Consensus 70 ~~~~~~~~~ 78 (78)
.+++++|++
T Consensus 93 ~~~~~~d~~ 101 (198)
T 3t1o_A 93 LILRGVDGI 101 (198)
T ss_dssp HHTTTCCEE
T ss_pred HHHhcCCEE
Confidence 999999873
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.79 E-value=5.7e-19 Score=101.33 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=66.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.|||||||++++..+.+...+.+|.+..+ .+.+.+++..+.+.+||++|++++.. +++.+++.+|+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~--~~~~~~~~~~~ 77 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSA--MRDQYMRTGEG 77 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCH--HHHHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhH--HHHHhhccCCE
Confidence 589999999999999999999999888899987655 67778899999999999999999999 99999998876
No 69
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.78 E-value=6.5e-19 Score=104.06 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=55.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++++.. +++.+++.+++
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~ 95 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSA--MRDQYMRTGEG 95 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-------------CTTCSE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHH--HHHHhhCcCCE
Confidence 589999999999999999999999888889887665 66778899999999999999999999 99999999886
No 70
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=6.4e-19 Score=104.87 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=65.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.||++.++ .+.+.+++..+.+.+||++|+++ .. +++.+++++|+
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~--~~~~~~~~~d~ 101 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TI--QREGHMRWGEG 101 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CH--HHHHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-cc--chhhhhccCCE
Confidence 589999999999999999999999989999998766 66778899999999999999998 77 99999999886
No 71
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.78 E-value=1.6e-19 Score=108.06 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=63.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||+++|.+..+...+.|+.+.++..+.+.+++..+.+.+||++|++++... +++.||+++|++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-~~~~~~~~~d~~ 100 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGW-LRDHCLQTGDAF 100 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHH-HHHHHHHHCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhh-hHHHhhccCCEE
Confidence 5899999999999999999865554445677777777888889999999999999999987632 788899988863
No 72
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=4.4e-19 Score=105.15 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=66.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+...+.||++..+ ...+.+++..+.+.+|||+|++++.. +++.+++++|+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~ 82 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPA--MQRLSISKGHA 82 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHH--HHHHHHHHCSE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHH--HHHHhhccCCE
Confidence 589999999999999999999999888999998665 56677889999999999999999999 99999998886
No 73
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.3e-20 Score=111.90 Aligned_cols=76 Identities=29% Similarity=0.472 Sum_probs=70.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+.+||||||++++..+.+...+.||.+.++..+.+.+++..+.+.+||++|+++|+. +++.+++++|++
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 99 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT--ITTAYYRGAMGF 99 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHH--HHHHHHTTCCEE
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHH--HHHHHHccCCEE
Confidence 4689999999999999999999999989999999999888888898899999999999999999 999999999863
No 74
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.78 E-value=3.7e-20 Score=111.58 Aligned_cols=74 Identities=28% Similarity=0.436 Sum_probs=67.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCE----------EEEEEEecCCCCCccCCcCchHhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNR----------GVKLILWDIGGKANESSAGLVKTY 71 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~----------~~~l~iwD~~G~~~~~~~~~~~~~ 71 (78)
+|+++|+.+||||||++++..+.+...+.||++.++..+.+.+++. .+.+.||||+|+++|+. ++..+
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~--~~~~~ 104 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS--LTTAF 104 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH--HHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh--HHHHH
Confidence 6899999999999999999999998889999998888888888776 88999999999999999 99999
Q ss_pred hccCcc
Q psy2599 72 LSSANI 77 (78)
Q Consensus 72 ~~~~~~ 77 (78)
++++|+
T Consensus 105 ~~~~d~ 110 (217)
T 2f7s_A 105 FRDAMG 110 (217)
T ss_dssp HTTCCE
T ss_pred hcCCCE
Confidence 999986
No 75
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.77 E-value=7.8e-19 Score=102.68 Aligned_cols=67 Identities=10% Similarity=0.173 Sum_probs=58.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||+++|..+.|.+ +.||++..+ .+.+.+++..+.+++|||+|+++ +.||+++|+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~d~ 75 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-------AKFSGWADA 75 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-------HHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-------hHHHHhCCE
Confidence 58999999999999999999999986 889998655 78888999999999999999886 246677765
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.77 E-value=1.9e-20 Score=111.59 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=38.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCCCCCCCCCCceeEEEEEEECCE--EEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFTRQYYPTSGPDFHLKLLTIQNR--GVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~~~~~~t~~~~~~~~~i~~~~~--~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+ .|...+.||++.++..+.+.+++. .+.+.+|||+|+++|.. +++.+++++|+
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~ 99 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKE--QISQYWNGVYY 99 (208)
T ss_dssp EEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHH--HHSTTCCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHH--HHHHHHhhCcE
Confidence 5899999999999999999998 888889999998888888888887 89999999999999999 99999999886
Q ss_pred C
Q psy2599 78 S 78 (78)
Q Consensus 78 ~ 78 (78)
+
T Consensus 100 ~ 100 (208)
T 2yc2_C 100 A 100 (208)
T ss_dssp E
T ss_pred E
Confidence 3
No 77
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.77 E-value=6e-19 Score=102.19 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|+++|+++||||||++++....+...+.++.+.++..+.+.+++..+.+.+||++|++++... +++.+++++|+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~d~ 78 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW-LQDHCLQTGDA 78 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---------CHHHHHCSE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh-hhhhhhccCCE
Confidence 46899999999999999999988777666677777787888899999999999999999998752 67788888876
No 78
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=101.05 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=56.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc--cCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN--ESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~--~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+... .++.+.++..+.+.+++..+.+.+||++|+++ +.. +++.+++.+|+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~~~~~ 80 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSW--SQESCLQGGSA 80 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CH--HHHHTTTSCSE
T ss_pred EEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhh--hHHhhcccCCE
Confidence 689999999999999999999888654 45677888788889999999999999999998 566 88889998876
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.76 E-value=3.3e-20 Score=110.80 Aligned_cols=74 Identities=27% Similarity=0.561 Sum_probs=67.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+.+...+.|+++.++....+.+++..+.+.||||+|+++++. ++..+++++|+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~ 108 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT--ITSSYYRGAHG 108 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC--CSCC--CCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH--HHHHHhhcCCE
Confidence 689999999999999999999999888889999888888899999999999999999999999 99999999886
No 80
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.76 E-value=1.3e-18 Score=100.56 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=43.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++++++|+++||||||++++.+..+. ...++.+..+ .+.+.+++..+.+.+||++|+++++. +++.+++++|++
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--~~~~~~~~~~~~ 76 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRW--LPGHCMAMGDAY 76 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC-----------------CCEE
T ss_pred EEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchh--hhhhhhhhCCEE
Confidence 57899999999999999999976654 4556777666 67778999999999999999999999 999999998863
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.76 E-value=5e-19 Score=104.94 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=58.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCC-CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTR-QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||+++|..+.+.. .+.||++... ..+ +...+.+.+|||+|+++|+. +++.|++++|++
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~--~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~i 90 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETF--EKGRVAFTVFDMGGAKKFRG--LWETYYDNIDAV 90 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEE--EETTEEEEEEEECCSGGGGG--GGGGGCTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEE--EeCCEEEEEEECCCCHhHHH--HHHHHHhcCCEE
Confidence 58999999999999999999999988 8899998443 333 34568899999999999999 999999999863
No 82
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.76 E-value=1.9e-18 Score=103.21 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=58.0
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc-cCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN-ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~-~~~~~~~~~~~~~~~~~ 78 (78)
+|++||+++||||||+++|++ ..|.+.+. +++.++..+.+.+++..+.+.+|||+|++. ++. +++.||+.++++
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~--~~~~~~~~~~~~ 84 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAY 84 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CT--TGGGHHHHCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhh--HHHhhcccCCEE
Confidence 689999999999999999995 34555444 467788788889999999999999999988 677 899999988863
No 83
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.76 E-value=2.9e-18 Score=108.43 Aligned_cols=74 Identities=20% Similarity=0.367 Sum_probs=67.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||+.++..+.+...+.+|++..+ ...+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 157 ~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~ 230 (332)
T 2wkq_A 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDR--LRPLSYPQTDVF 230 (332)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTT--TGGGGCTTCSEE
T ss_pred EEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhH--HHHHhccCCCEE
Confidence 589999999999999999999999989999997665 67778899999999999999999999 999999999863
No 84
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.75 E-value=2.4e-18 Score=102.08 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=54.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
++|+++|+++||||||+++|+.+.|...+.||. .++ .+.+.+++..+.+++|||+|+++|+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 81 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ 81 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh
Confidence 368999999999999999999999998898984 455 5888999999999999999998754
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.75 E-value=9.5e-19 Score=100.93 Aligned_cols=71 Identities=18% Similarity=0.389 Sum_probs=59.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+++||||||++++..+.|.+ +.||++.. ...+.. ..+.+.+|||+|+++++. +++.+++++|++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 71 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRP--LWRHYFQNTQGL 71 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHH--HHHHHTTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHH--HHHHHhccCCEE
Confidence 579999999999999999999988874 68898843 344444 457899999999999999 999999999863
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.75 E-value=4.3e-19 Score=105.18 Aligned_cols=72 Identities=24% Similarity=0.421 Sum_probs=62.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+.+||||||++++..+.+...+.||++.++. .+.. ..+.+.+||++|+++|+. ++..+++++|++
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~i 94 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRS--MWERYCRGVSAI 94 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHT--THHHHHTTCSEE
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe--CCEEEEEEECCCCHhHHH--HHHHHHccCCEE
Confidence 36899999999999999999999998889999987763 2333 467889999999999999 999999999863
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.75 E-value=6.1e-18 Score=100.64 Aligned_cols=70 Identities=24% Similarity=0.396 Sum_probs=61.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||++++..+++. .+.||++.. ...+.+++ +.+.+|||+|+++++. +++.+++++|++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~--~~~~~~~~~d~~ 94 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARR--LWKDYFPEVNGI 94 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTT--SGGGGCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHH--HHHHHHhcCCEE
Confidence 5899999999999999999999886 578898864 45667776 7889999999999999 999999998863
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.75 E-value=1.3e-18 Score=104.21 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=52.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|++|||||||++++..+++. .+.||++.+. ..+.+++ +.+.+|||+|+++++. +++.||+++|++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~--~~~~~~~~~d~~ 96 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARR--VWKNYLPAINGI 96 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CC--GGGGGGGGCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHH--HHHHHHhcCCEE
Confidence 5899999999999999999998875 5788988653 5667776 7899999999999999 999999999863
No 89
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.61 E-value=7e-20 Score=109.61 Aligned_cols=75 Identities=20% Similarity=0.389 Sum_probs=67.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
++|+++|+++||||||+.++..+.+...+.||.+..+ ...+.+++..+.+.+|||+|+++|.. +++.+++++|++
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~d~i 105 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDR--LRPLSYPQTDVF 105 (204)
Confidence 4689999999999999999999999888999987655 66677888899999999999999999 999999998864
No 90
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2e-18 Score=105.21 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=60.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc-cCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN-ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~-~~~~~~~~~~~~~~~~~ 78 (78)
+|++||+++||||||+++|+.. .|.+.+ ++++.++..+.+.+++..+.+.+|||+|++. ++. +++.||+.++++
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~--l~~~~~~~a~~~ 115 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAY 115 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhh--HHHHHHhhCCEE
Confidence 5899999999999999999954 345544 4577888788889999999999999999988 666 888899988763
No 91
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=101.83 Aligned_cols=70 Identities=14% Similarity=0.344 Sum_probs=61.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC-CCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE-FTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+.+||||||++++..+. +...+.||++ +....+.+++ +.+.+|||+|+++++. +++.+++++|+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~--~~~~~~~~~d~ 93 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRN--LWEHYYKEGQA 93 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGG--GGGGGGGGCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHH--HHHHHHhcCCE
Confidence 58999999999999999999887 6777889987 4456666654 7889999999999999 99999999886
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.9e-18 Score=102.09 Aligned_cols=70 Identities=21% Similarity=0.489 Sum_probs=56.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+++. .+.||++.. .+.+.+++ +.+.+|||+|+++++. +++.+++++|++
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~--~~~~~~~~~d~i 87 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRS--SWNTYYTNTEFV 87 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CG--GGHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHH--HHHHHhcCCCEE
Confidence 5899999999999999999999888 788998854 44556654 7889999999999999 999999999863
No 93
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.74 E-value=6.6e-18 Score=97.79 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=59.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+. .+.||++.. ...+.++ .+.+.+|||+|+++++. +++.+++++|+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~--~~~~~~~~~d~ 77 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRP--YWRCYYSNTDA 77 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGG--GGGGGCTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEEC--CEEEEEEECCCChhhhH--HHHHHhccCCE
Confidence 5899999999999999999999886 478888744 4556665 57889999999999999 99999999886
No 94
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.73 E-value=1.9e-18 Score=104.11 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=65.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC-CEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++.++.+...+.+|.+.++....+... +..+.+.+|||+|++++.. ++..+++++|++
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~ 88 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV--LKDVYYIGASGA 88 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC--CCHHHHTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch--HHHHHhhcCCEE
Confidence 68999999999999999999999988889999877755555444 4458999999999999999 999999998863
No 95
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.72 E-value=6.5e-18 Score=98.48 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=62.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+.+...+.|++..++....+.+++.. +.+|||+|+++|.. ++..+++.+|+
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~--~~~~~~~~~d~ 81 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTT--MRARGAQVTDI 81 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSC--SCCSSCCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHH--HHHHHHhhCCE
Confidence 58999999999999999999999988888888777766777787754 56999999999999 99988888875
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.72 E-value=3.3e-18 Score=100.68 Aligned_cols=70 Identities=21% Similarity=0.472 Sum_probs=60.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.+||||||++++..+.+ ..+.||++... +.+.+++ +.+.+||++|+++++. +++.+++++|++
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~--~~~~~~~~~d~i 92 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRS--SWNTYYTNTEFV 92 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTC--GGGGGGTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHH--HHHHHhccCCEE
Confidence 589999999999999999999988 56889998654 4556654 7889999999999999 999999999863
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.72 E-value=9.4e-18 Score=98.75 Aligned_cols=69 Identities=25% Similarity=0.483 Sum_probs=59.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+. ...+.||++.. .+.+.++ .+.+.+|||+|+++++. +++.+++++|+
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~--~~~~~~~~~d~ 88 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRS--YWRNYFESTDG 88 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHT--TGGGGCTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHH--HHHHHhcCCCE
Confidence 58999999999999999999888 66789998844 4556664 47889999999999999 99999999886
No 98
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.72 E-value=5.7e-18 Score=100.90 Aligned_cols=70 Identities=19% Similarity=0.403 Sum_probs=54.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||+.++..+++. .+.||++ +..+.+..+ .+.+.+|||+|+++|+. +++.+++++|++
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~--~~~~~~~~~d~i 100 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRP--LWRHYFQNTQGL 100 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEET--TEEEEEEECC-----CT--THHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHH--HHHHHhccCCEE
Confidence 5899999999999999999998887 4688887 334555553 47889999999999999 999999998863
No 99
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.72 E-value=2.4e-18 Score=101.65 Aligned_cols=70 Identities=24% Similarity=0.494 Sum_probs=59.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||++++..+.+. .+.||++. ..+.+.++ .+.+.+|||+|+++++. +++.|++++|++
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~--~~~~~~~~~~~~ 87 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRP--YWRSYFENTDIL 87 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHH--HHHHHHTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHH--HHHHHhCCCCEE
Confidence 5899999999999999999988664 57888884 35566665 57889999999999999 999999999863
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=4.4e-18 Score=102.27 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=59.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCE-EEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNR-GVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~-~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
++|+++|+++||||||+.+|..+.|.+.+.++. .++.. +.+++. .+.+.+|||+|+++|+.. +++.|++++|+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~ 81 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQ-LLDRFKSSARA 81 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHH-HHHHHGGGEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHH-HHHHHHhhCCE
Confidence 358999999999999999999999988776554 55533 666655 689999999999998753 68889998876
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=4.4e-17 Score=94.85 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=53.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCc----CchHhhhc--cC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSA----GLVKTYLS--SA 75 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~----~~~~~~~~--~~ 75 (78)
+++++|++|||||||++++....+...+.|+...+.....+.+++ ..+.+|||+|+++|... .+.+.|++ ++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 589999999999999999998877666667666666566667765 57899999999998630 05577776 55
Q ss_pred cc
Q psy2599 76 NI 77 (78)
Q Consensus 76 ~~ 77 (78)
++
T Consensus 83 ~~ 84 (165)
T 2wji_A 83 DL 84 (165)
T ss_dssp SE
T ss_pred CE
Confidence 54
No 102
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.69 E-value=6.6e-18 Score=99.75 Aligned_cols=70 Identities=20% Similarity=0.418 Sum_probs=59.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+++||||||++++..+++.+ +.||++.. ...+.++ .+.+.+|||+|+++++. +++.+++++|++
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~--~~~~~~~~~d~i 93 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRP--YWRCYFSDTDAV 93 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCC--CCSSSSTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHH--HHHHHhhcCCEE
Confidence 68999999999999999999888864 78888744 4455564 57889999999999999 999999998863
No 103
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=7.8e-18 Score=98.65 Aligned_cols=69 Identities=23% Similarity=0.392 Sum_probs=55.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||++++..+++ ..+.||++.. ...+.+++ +.+.+||++|+++++. +++.+++++|+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~--~~~~~~~~~d~ 88 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRP--YWRCYYADTAA 88 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCT--TGGGTTTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHH--HHHHHhccCCE
Confidence 589999999999999999998888 5688998844 45566654 7889999999999999 99999998886
No 104
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.69 E-value=4.9e-18 Score=101.25 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=55.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEE--EC-CEEEEEEEecCCCCCccCCcCch---Hhhhcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLT--IQ-NRGVKLILWDIGGKANESSAGLV---KTYLSS 74 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~--~~-~~~~~l~iwD~~G~~~~~~~~~~---~~~~~~ 74 (78)
++|+++|+++||||||++++.+ .+... ++++.++..+.+. +. +..+.+++||++|+++|.. +. +.||++
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~~~~~ 95 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD--PTFDYEMIFRG 95 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC--TTCCHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHh--hhhhccccccc
Confidence 4699999999999999997665 44433 4555554333333 33 6778999999999999988 76 899999
Q ss_pred CccC
Q psy2599 75 ANIS 78 (78)
Q Consensus 75 ~~~~ 78 (78)
+|++
T Consensus 96 ~~~~ 99 (196)
T 3llu_A 96 TGAL 99 (196)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 9873
No 105
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=1.4e-16 Score=93.67 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=56.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC------CcCchHhhhcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES------SAGLVKTYLSS 74 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~------~~~~~~~~~~~ 74 (78)
+++++|++|||||||++++....+...+.|++..+.....+.+++ ..+.+|||+|++++. . +++.|++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~--~~~~~~~~ 83 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEI--IARDYIIN 83 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHH--HHHHHHhc
Confidence 589999999999999999998776656677777777677777765 678999999999986 4 57777764
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.65 E-value=9.8e-17 Score=102.14 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=59.6
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC--CCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc-----CCcCchHhhh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD--EFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE-----SSAGLVKTYL 72 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~--~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~-----~~~~~~~~~~ 72 (78)
++|+++|+++||||||++++..+ .+. ..+.+|++.++. .+.+++ .+.+.+|||+|+++| .. +++.+|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~--~~~~~~ 78 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTK--QKDHIF 78 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTT--THHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhh--HHHHHh
Confidence 36899999999999999999977 333 357788887664 344544 688999999999999 88 999999
Q ss_pred ccCccC
Q psy2599 73 SSANIS 78 (78)
Q Consensus 73 ~~~~~~ 78 (78)
+++|++
T Consensus 79 ~~ad~v 84 (307)
T 3r7w_A 79 QMVQVL 84 (307)
T ss_dssp TTCSEE
T ss_pred ccCCEE
Confidence 999863
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.61 E-value=7.1e-17 Score=103.72 Aligned_cols=69 Identities=17% Similarity=0.387 Sum_probs=53.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANI 77 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~ 77 (78)
+|+++|+++||||||+.++..+.|... .||++.++. .+.. ..+.+.||||+|+++|.. +++.+++++|+
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~--~~~~~~~~ad~ 235 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRP--LWRHYFQNTQG 235 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE--TTEEEEEEECC-----CC--SHHHHHTTEEE
T ss_pred eEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec--CcEEEEEEECCCCHhHHH--HHHHHhccCCE
Confidence 589999999999999999999888754 578876543 3334 457889999999999999 99999999886
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.61 E-value=5e-16 Score=103.68 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=59.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|+++||||||++++..+++. .+.||++.++. .+.+ +.+.+.||||+|+++|+. +++.+|+++|++
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~--~~~~~~~~ad~~ 393 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRP--LWRHYYTGTQGL 393 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEES--SSCEEEEEEECCCGGGSG--GGGGGGTTCCEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEe--CCEEEEEEECCCcHHHHH--HHHHHhccCCEE
Confidence 5899999999999999999999876 46789886543 3444 457899999999999999 999999999863
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.61 E-value=1.8e-16 Score=93.16 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=56.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCC-----------CCccCCcCchH
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG-----------KANESSAGLVK 69 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G-----------~~~~~~~~~~~ 69 (78)
++|+++|++|||||||++++..+.+...+.|++..+. ..+.++ .+.+|||+| +++++. ++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~--~~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKD--EIV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHH--HHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHH--HHH
Confidence 4789999999999999999999999888888765443 333443 689999999 778888 888
Q ss_pred hhhcc-CccC
Q psy2599 70 TYLSS-ANIS 78 (78)
Q Consensus 70 ~~~~~-~~~~ 78 (78)
.|+++ ++++
T Consensus 74 ~~~~~~~~~~ 83 (190)
T 2cxx_A 74 HFIEDNAKNI 83 (190)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHhhhccC
Confidence 88887 6653
No 110
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.60 E-value=8.8e-18 Score=104.45 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=53.4
Q ss_pred CceeEcCC---------CCCHHHHHHHHHh---CCCCCCCCCCC-CceeEEEEEE--------------ECCEEEEEEEe
Q psy2599 2 APLYIKVL---------TEGTSCFSTRYTQ---DEFTRQYYPTS-GPDFHLKLLT--------------IQNRGVKLILW 54 (78)
Q Consensus 2 ~~v~vG~~---------~vGKTsl~~~~~~---~~~~~~~~~t~-~~~~~~~~i~--------------~~~~~~~l~iw 54 (78)
+|+++|++ +||||||+++|+. +.|...+.||+ +.++..+.+. ++++.+.++||
T Consensus 21 ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~ 100 (255)
T 3c5h_A 21 NISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIV 100 (255)
T ss_dssp EEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEE
T ss_pred EEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEE
Confidence 68999999 9999999999998 66777788876 5555433322 46788999999
Q ss_pred c-----------------------CCCCCccCCcCchHhhhc
Q psy2599 55 D-----------------------IGGKANESSAGLVKTYLS 73 (78)
Q Consensus 55 D-----------------------~~G~~~~~~~~~~~~~~~ 73 (78)
| ++|+++|+. +++.||+
T Consensus 101 D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~--~~~~~~~ 140 (255)
T 3c5h_A 101 EQTEFIDDQTFQPHRSTALQPYIKRAAATKLAS--AEKLMYF 140 (255)
T ss_dssp EECCCEETTTCSBTTGGGCCCHHHHHTCSEEEC--TTCBCCC
T ss_pred Eccccccccccccccccccccccccchhhhhhh--hhhhhhh
Confidence 9 889999999 9999998
No 111
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.60 E-value=2.8e-16 Score=105.98 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=53.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEE------EEE--CCEEEEEEEecCCCCCccCCcCchHhhh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKL------LTI--QNRGVKLILWDIGGKANESSAGLVKTYL 72 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~------i~~--~~~~~~l~iwD~~G~~~~~~~~~~~~~~ 72 (78)
++|+++|+++||||||++++..+.|...+.||++.++..+. +.+ +++.+.+.+||++|++.|.. +++.++
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~--~~~~~l 119 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA--SHQFFM 119 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT--TCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH--HHHHHc
Confidence 36899999999999999999999999899999998886542 222 34468899999999999999 999999
Q ss_pred ccCcc
Q psy2599 73 SSANI 77 (78)
Q Consensus 73 ~~~~~ 77 (78)
+.+++
T Consensus 120 ~~~d~ 124 (535)
T 3dpu_A 120 TRSSV 124 (535)
T ss_dssp HSSEE
T ss_pred cCCcE
Confidence 98875
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.59 E-value=1.8e-15 Score=86.67 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=49.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc-------CCcCchHhhhc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE-------SSAGLVKTYLS 73 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~-------~~~~~~~~~~~ 73 (78)
+++++|+.|||||||++++..+.+. ....++...++....+..++. .+.+|||+|++++ .. .+..+++
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~--~~~~~~~ 78 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQE--KVDRALE 78 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHH--HHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHH--HHHHHHH
Confidence 5899999999999999999988753 223344445565666777665 6789999999884 34 4566777
Q ss_pred cCcc
Q psy2599 74 SANI 77 (78)
Q Consensus 74 ~~~~ 77 (78)
.+|+
T Consensus 79 ~~~~ 82 (161)
T 2dyk_A 79 DAEV 82 (161)
T ss_dssp TCSE
T ss_pred hCCE
Confidence 7775
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.56 E-value=6.7e-16 Score=91.23 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=46.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCC----------CCccCCcCchHhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG----------KANESSAGLVKTY 71 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G----------~~~~~~~~~~~~~ 71 (78)
+++++|+.|||||||++++..+.|...+.++.+.........+++ .+.+|||+| ++++.. +++.|
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~--~~~~~ 99 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR--MIETY 99 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH--HHHHH
Confidence 589999999999999999999887777777776555444445554 589999999 788888 88899
Q ss_pred hccC
Q psy2599 72 LSSA 75 (78)
Q Consensus 72 ~~~~ 75 (78)
++.+
T Consensus 100 ~~~~ 103 (195)
T 1svi_A 100 ITTR 103 (195)
T ss_dssp HHHC
T ss_pred Hhhh
Confidence 8876
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.55 E-value=2.2e-14 Score=84.13 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=51.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCch--------Hhhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLV--------KTYL 72 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~--------~~~~ 72 (78)
+++++|++|||||||++++....+. ....|+...++....+.+++.. +.+|||+|++++.. .. ..++
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASD--EVERIGIERAWQEI 81 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSS--HHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchh--HHHHHHHHHHHHHH
Confidence 6899999999999999999987642 1223344456667778887754 78999999987543 21 1357
Q ss_pred ccCcc
Q psy2599 73 SSANI 77 (78)
Q Consensus 73 ~~~~~ 77 (78)
+++|+
T Consensus 82 ~~ad~ 86 (172)
T 2gj8_A 82 EQADR 86 (172)
T ss_dssp HTCSE
T ss_pred HhCCE
Confidence 77765
No 115
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.55 E-value=6.9e-16 Score=91.17 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=46.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCC---CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhcc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTR---QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSS 74 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~ 74 (78)
++++++|+.|||||||++++....+.. .+.|+.+.++ ..+.+.+|||+|++.++. .+..++++
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~--~~~~~~~~ 114 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRY--KLSDYLKT 114 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSC--CHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHH--HHHHHHHh
Confidence 358999999999999999999987754 2334333222 456789999999999999 99999876
No 116
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.54 E-value=7.1e-16 Score=92.80 Aligned_cols=62 Identities=21% Similarity=0.287 Sum_probs=51.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCC---CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTR---QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSS 74 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~ 74 (78)
+++++|++|||||||++++..+.+.. .+.|+++.++ ..+.+.+|||+|+++++. ++..|++.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~--~~~~~~~~ 78 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRY--KLSDYLKT 78 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHH--HHHHHHHh
Confidence 58999999999999999999988764 3455554333 456789999999999999 99999987
No 117
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=2.6e-14 Score=92.88 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=44.1
Q ss_pred CceeEcCCCCCHHHHHHHHH-hCCCCCCCC--------CCCCceeEEEEEEECCEEEEEEEecCCCC-------CccCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYT-QDEFTRQYY--------PTSGPDFHLKLLTIQNRGVKLILWDIGGK-------ANESSA 65 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~-~~~~~~~~~--------~t~~~~~~~~~i~~~~~~~~l~iwD~~G~-------~~~~~~ 65 (78)
+|+++|++|+|||||++++. .+.+...+. +|++.++....+..++..+.+.+|||+|+ ++|..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~- 117 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT- 117 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CC-
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHH-
Confidence 58999999999999999965 455554443 56665554444555677889999999999 88888
Q ss_pred CchH-------hhhccCcc
Q psy2599 66 GLVK-------TYLSSANI 77 (78)
Q Consensus 66 ~~~~-------~~~~~~~~ 77 (78)
+++ .|++.+++
T Consensus 118 -i~~~i~~~~~~yl~~~~~ 135 (361)
T 2qag_A 118 -IISYIDEQFERYLHDESG 135 (361)
T ss_dssp -THHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHHHHhhh
Confidence 988 88876554
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.48 E-value=9.4e-14 Score=86.66 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=47.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+|+++|+++||||||++++.+..+.....|.+..+.....+..+ ...+.+|||+|+..+..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCC
Confidence 58999999999999999999877654455655555544444443 46889999999998876
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.47 E-value=2.2e-14 Score=84.35 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=51.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCC----------CCccCCcCchHhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG----------KANESSAGLVKTY 71 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G----------~~~~~~~~~~~~~ 71 (78)
+|+++|+.|||||||++++..+.+. .+.++.+..........+. .+.+|||+| ++.+.. +++.|
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~--~~~~~ 98 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR--LVEDY 98 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH--HHHHH
Confidence 5899999999999999999988743 4556665544333333333 467999999 777888 88999
Q ss_pred hccCc
Q psy2599 72 LSSAN 76 (78)
Q Consensus 72 ~~~~~ 76 (78)
++.++
T Consensus 99 ~~~~~ 103 (195)
T 3pqc_A 99 FKNRW 103 (195)
T ss_dssp HHHCT
T ss_pred HhcCc
Confidence 98773
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.46 E-value=2.8e-14 Score=89.85 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=51.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC------CcCchHhhhcc-
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES------SAGLVKTYLSS- 74 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~------~~~~~~~~~~~- 74 (78)
+|+++|+++||||||++++.+..+.....|.+..+ .+...++. .+.+.+|||+|++++. . +++.|++.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~--v~~~~~~~~ 79 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAK--VARDYLLSQ 79 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHH--HHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHH--HHHHHHhcC
Confidence 58999999999999999999866433334433333 34445555 6789999999999987 4 66778863
Q ss_pred -Ccc
Q psy2599 75 -ANI 77 (78)
Q Consensus 75 -~~~ 77 (78)
+|+
T Consensus 80 ~~d~ 83 (272)
T 3b1v_A 80 RADS 83 (272)
T ss_dssp CCSE
T ss_pred CCCE
Confidence 543
No 121
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.46 E-value=5.7e-14 Score=86.09 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=40.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCC--CCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYP--TSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~--t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
+|+++|++|||||||++++....+.....| ++..++....+.+++. .+.||||+|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~ 89 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIF 89 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCcc
Confidence 589999999999999999998887666555 3444454555666654 56899999943
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.45 E-value=1.7e-13 Score=85.50 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=50.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+|+++|+++||||||++++.+..+.....|++..+.....+.+++. .+.+|||+|+..+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVA 63 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccc
Confidence 4889999999999999999988765556677777777777777765 788999999988764
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.45 E-value=2.3e-13 Score=85.02 Aligned_cols=61 Identities=8% Similarity=0.084 Sum_probs=50.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+++++|++|||||||++++.+..+.....|++..+.....+..++.. +.+|||+|+..+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTA 65 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCcccccc
Confidence 58999999999999999999887765677877777777777776654 78999999998765
No 124
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.44 E-value=2.9e-13 Score=84.24 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=49.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLS 73 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~ 73 (78)
+|+++|+.|+|||||++++....+ ...+.++. .......+..++. .+.+|||+|++++.. +.+.+++
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~--~l~liDTpG~~~~~~--~~~~~~~ 106 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG-LRPVMVSRTMGGF--TINIIDTPGLVEAGY--VNHQALE 106 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-C-CCCEEEEEEETTE--EEEEEECCCSEETTE--ECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-eeeEEEEEEECCe--eEEEEECCCCCCccc--chHHHHH
Confidence 589999999999999999998774 33333332 3333445555554 788999999999987 7777665
No 125
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.42 E-value=1.3e-13 Score=83.78 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=38.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
+|+++|+++||||||++++..+.+.....+....++....+..+ .+.+.+|||+|+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~ 87 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLL 87 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCc
Confidence 58999999999999999999888753333322233333333343 3678999999993
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.42 E-value=2e-14 Score=86.61 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=48.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEEC-CEEEEEEEecCCCC----------CccCCcCchHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGGK----------ANESSAGLVKT 70 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwD~~G~----------~~~~~~~~~~~ 70 (78)
+|+++|+.|||||||++++....+.....++.+.........+. .....+.||||+|. +++.. +...
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~--~~~~ 108 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ--LLSS 108 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH--HHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH--HHHH
Confidence 58999999999999999999886322222222222222233443 34567899999994 45566 7777
Q ss_pred hhccCc
Q psy2599 71 YLSSAN 76 (78)
Q Consensus 71 ~~~~~~ 76 (78)
|++.++
T Consensus 109 ~~~~~~ 114 (223)
T 4dhe_A 109 YLQTRP 114 (223)
T ss_dssp HHHHCT
T ss_pred HHhcCc
Confidence 877643
No 127
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.41 E-value=7.9e-13 Score=81.75 Aligned_cols=61 Identities=8% Similarity=0.021 Sum_probs=45.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC-CCCCCCCC-CCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE-FTRQYYPT-SGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~-~~~~~~~t-~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+|+++|..|||||||++++.... +...+.|+ +..+.....+..++ ..+.||||+|...+..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~ 86 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKD 86 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCC
Confidence 58999999999999999999876 66555554 33444444555555 4578999999887654
No 128
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.41 E-value=2.2e-13 Score=90.15 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=47.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc---------CCcCchHhhh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE---------SSAGLVKTYL 72 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~---------~~~~~~~~~~ 72 (78)
|++||.++||||||+++++..++. ....|.+..++....+.+++.. +.+|||+|++.. +. .+..++
T Consensus 4 v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~--~~~~~~ 79 (439)
T 1mky_A 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKE--VTLNMI 79 (439)
T ss_dssp EEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHH--HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHH--HHHHHH
Confidence 789999999999999999987642 2234444455656677777764 578999998752 34 567788
Q ss_pred ccCccC
Q psy2599 73 SSANIS 78 (78)
Q Consensus 73 ~~~~~~ 78 (78)
++||++
T Consensus 80 ~~ad~i 85 (439)
T 1mky_A 80 READLV 85 (439)
T ss_dssp TTCSEE
T ss_pred HhCCEE
Confidence 988863
No 129
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.40 E-value=1.6e-13 Score=85.93 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=41.1
Q ss_pred CceeEcCCCCCHHHHHHHHH-hCCCCCCC-------CCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYT-QDEFTRQY-------YPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~-~~~~~~~~-------~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+|+++|.+|+|||||++++. .+.+...+ .+|++.++....+..++..+.+.+|||+|...
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 58999999999999999955 55566666 78888777666665666678999999999843
No 130
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.37 E-value=6e-13 Score=83.52 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=48.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+|+++|+++||||||++++.+..+.....|.+..+.....+..++. .+.+|||+|+..+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTT 65 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCcccc
Confidence 5899999999999999999988765556676666766666766554 567899999998873
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.35 E-value=9.2e-14 Score=91.90 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=48.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCC----------CccCCcCchH-
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK----------ANESSAGLVK- 69 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~----------~~~~~~~~~~- 69 (78)
+++++|+++||||||++++....+. ....|....+.....+.+++.. +.||||+|+ |+|.. ++.
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~--~~~~ 252 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSV--LRAL 252 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHH--HHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHH--HHHH
Confidence 5889999999999999999988763 2233434455555667777764 789999998 55555 444
Q ss_pred hhhccCccC
Q psy2599 70 TYLSSANIS 78 (78)
Q Consensus 70 ~~~~~~~~~ 78 (78)
.+++.+|++
T Consensus 253 ~~~~~ad~~ 261 (436)
T 2hjg_A 253 KAIDRSEVV 261 (436)
T ss_dssp HHHHHCSEE
T ss_pred HHHHhCCEE
Confidence 377777753
No 132
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.34 E-value=4.8e-13 Score=82.82 Aligned_cols=57 Identities=5% Similarity=-0.098 Sum_probs=36.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCC--ceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSG--PDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~--~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
++|+++|.+|||||||++++....+.....++.+ .......+..++ ..+.+|||+|.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~ 80 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDI 80 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCC
Confidence 3689999999999999999998775433222211 223233444554 45789999997
No 133
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.32 E-value=3.8e-14 Score=96.30 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=58.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|+.++|||||+.++....+...+.|++..++....+.++ ....+.||||+|+++|.. ++..+++.+|++
T Consensus 6 kV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~--~~~~~~~~aD~v 79 (537)
T 3izy_P 6 VVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSA--MRARGTQVTDIV 79 (537)
T ss_dssp BCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTT--SBBSSSBSBSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHH--HHHHHHccCCEE
Confidence 58999999999999999999877765666666655544334332 223678999999999999 999999998875
No 134
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.32 E-value=2.7e-12 Score=81.68 Aligned_cols=71 Identities=15% Similarity=0.072 Sum_probs=48.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCC-CCCC-CCCceeEEEEEEECCEEEEEEEecCCCCCc--------cCCcCchHhhh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTR-QYYP-TSGPDFHLKLLTIQNRGVKLILWDIGGKAN--------ESSAGLVKTYL 72 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~-~~~~-t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~--------~~~~~~~~~~~ 72 (78)
++++|.++||||||++++...++.. ...| |.. +.....+.. ....+.+|||+|..+ +.. ....++
T Consensus 10 V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~--~~~~~l 84 (301)
T 1wf3_A 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQ--EVYEAL 84 (301)
T ss_dssp EEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHH--HHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHH--HHHHHH
Confidence 7899999999999999999887742 2222 222 221222222 356789999999987 445 566788
Q ss_pred ccCccC
Q psy2599 73 SSANIS 78 (78)
Q Consensus 73 ~~~~~~ 78 (78)
+++|++
T Consensus 85 ~~ad~i 90 (301)
T 1wf3_A 85 ADVNAV 90 (301)
T ss_dssp SSCSEE
T ss_pred hcCCEE
Confidence 888763
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.32 E-value=2.2e-13 Score=90.53 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=50.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC-CCCCCCCCCCceeEEEEEEECCEEEEEEEecCCC----------CCccCCcCchHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE-FTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG----------KANESSAGLVKT 70 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G----------~~~~~~~~~~~~ 70 (78)
+++++|+++||||||++++.... ......|+...+.....+.+++. .+.||||+| +++|.. ++..
T Consensus 197 ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~--~~~~ 272 (456)
T 4dcu_A 197 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSV--LRAL 272 (456)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHH--HHHH
T ss_pred eeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHH--HHHH
Confidence 57899999999999999999664 22233344445554566677776 678999999 788877 7665
Q ss_pred -hhccCcc
Q psy2599 71 -YLSSANI 77 (78)
Q Consensus 71 -~~~~~~~ 77 (78)
+++.+|+
T Consensus 273 ~~~~~ad~ 280 (456)
T 4dcu_A 273 KAIDRSEV 280 (456)
T ss_dssp HHHHHCSE
T ss_pred HHHhhCCE
Confidence 6777775
No 136
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.32 E-value=9.5e-13 Score=82.14 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=43.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC--CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchH
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT--RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVK 69 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~ 69 (78)
+|+++|+.|+|||||++++....+. ..+.++. .+ ...+.+......+.+|||+|.+++.. +.+
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~--~~~~~~~~~~~~l~iiDTpG~~~~~~--~~~ 105 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG-PR--PVMVSRSRAGFTLNIIDTPGLIEGGY--IND 105 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC-SS--CEEEEEEETTEEEEEEECCCSEETTE--ECH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc-ee--eEEEEEeeCCeEEEEEECCCCCCCcc--chH
Confidence 5899999999999999999987753 2222322 22 22233333456789999999988875 544
No 137
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.31 E-value=1.6e-12 Score=86.22 Aligned_cols=74 Identities=9% Similarity=0.056 Sum_probs=53.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC-------------------------------CCCCCCCCCCCceeEEEEEEECCEEE
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD-------------------------------EFTRQYYPTSGPDFHLKLLTIQNRGV 49 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~i~~~~~~~ 49 (78)
++++++|..++|||||+.++... .+..+..+.+..+.....+..+ ..
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~--~~ 95 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE--KK 95 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC--Ce
Confidence 35899999999999999999532 1222222334444444444443 45
Q ss_pred EEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 50 KLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 50 ~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+.||||+|+++|.. .+..+++.+|+|
T Consensus 96 ~~~iiDTPGh~~f~~--~~~~~~~~aD~~ 122 (439)
T 3j2k_7 96 HFTILDAPGHKSFVP--NMIGGASQADLA 122 (439)
T ss_pred EEEEEECCChHHHHH--HHHhhHhhCCEE
Confidence 789999999999998 888899988875
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.29 E-value=2e-13 Score=90.33 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=42.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC--------ccCCcCchHhhhc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA--------NESSAGLVKTYLS 73 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~--------~~~~~~~~~~~~~ 73 (78)
+|+++|.++||||||++++.+..+. ...++.|.........+.-....+.+|||+|++ +++. .+..+++
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~--~~~~~~~ 81 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQ--QAEIAMD 81 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHH--HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHH--HHHHHHH
Confidence 4899999999999999999987653 223344443222222333334578999999996 5667 7788888
Q ss_pred cCcc
Q psy2599 74 SANI 77 (78)
Q Consensus 74 ~~~~ 77 (78)
.||+
T Consensus 82 ~ad~ 85 (436)
T 2hjg_A 82 EADV 85 (436)
T ss_dssp HCSE
T ss_pred hCCE
Confidence 8876
No 139
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.28 E-value=1.2e-12 Score=83.26 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=39.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhC-CCCCCC--------CCCCCceeEEEEEEECCEEEEEEEecCCCC-------CccCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD-EFTRQY--------YPTSGPDFHLKLLTIQNRGVKLILWDIGGK-------ANESSA 65 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~-~~~~~~--------~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~-------~~~~~~ 65 (78)
+++++|++|+|||||++++... .++..+ .+++..+.....+..++..+.+.+||++|+ ++++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~- 98 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT- 98 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH-
Confidence 4789999999999999997754 565544 233322221222223445678999999998 77777
Q ss_pred CchH-------hhhccCc
Q psy2599 66 GLVK-------TYLSSAN 76 (78)
Q Consensus 66 ~~~~-------~~~~~~~ 76 (78)
+.+ .|++.++
T Consensus 99 -l~~~l~~~~~~~~~~~s 115 (301)
T 2qnr_A 99 -IISYIDEQFERYLHDES 115 (301)
T ss_dssp -HHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHhC
Confidence 777 6776554
No 140
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.28 E-value=1.7e-12 Score=87.09 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=35.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCch--------Hhhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLV--------KTYL 72 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~--------~~~~ 72 (78)
+|+++|.++||||||++++..... .....|....++....+.+++ +.+.+|||+|++++.. .+ ..++
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~--~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGE--EIEHEGIRRSRMKM 310 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC----------------------CCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchh--HHHHHHHHHHHhhc
Confidence 589999999999999999998752 222334344566566677766 4689999999988765 44 3356
Q ss_pred ccCcc
Q psy2599 73 SSANI 77 (78)
Q Consensus 73 ~~~~~ 77 (78)
+++|+
T Consensus 311 ~~aD~ 315 (476)
T 3gee_A 311 AEADL 315 (476)
T ss_dssp SSCSE
T ss_pred ccCCE
Confidence 77665
No 141
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.27 E-value=5.9e-13 Score=89.07 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=51.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC--CCC-----------------------------CCCCCCCCceeEEEEEEECCEEE
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD--EFT-----------------------------RQYYPTSGPDFHLKLLTIQNRGV 49 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~--~~~-----------------------------~~~~~t~~~~~~~~~i~~~~~~~ 49 (78)
++++++|..++|||||+.+++.. .+. .+..+ |..+......++....
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~--GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERER--GVTVSICTSHFSTHRA 111 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------C--CSSCCCCEEEEECSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhc--CcceEeeeEEEecCCc
Confidence 36899999999999999999754 111 11111 2222222223444557
Q ss_pred EEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 50 KLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 50 ~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+.||||+|+++|.. .+..+++.+|++
T Consensus 112 ~~~iiDTPG~~~f~~--~~~~~~~~aD~~ 138 (483)
T 3p26_A 112 NFTIVDAPGHRDFVP--NAIMGISQADMA 138 (483)
T ss_dssp EEEEECCCCCGGGHH--HHHHHHTTCSEE
T ss_pred eEEEEECCCcHHHHH--HHHHhhhhCCEE
Confidence 789999999999999 999999999874
No 142
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.25 E-value=2.6e-13 Score=90.18 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=50.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCC--------CCccCCcCchHhhhc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG--------KANESSAGLVKTYLS 73 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G--------~~~~~~~~~~~~~~~ 73 (78)
+|+++|.++||||||++++....+. ...++.|.........+......+.+|||+| +++++. .+..+++
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~--~~~~~~~ 101 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQ--QAEIAMD 101 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHH--HHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHH--HHHhhHh
Confidence 4899999999999999999987654 2233444444333344554556889999999 777888 8888898
Q ss_pred cCcc
Q psy2599 74 SANI 77 (78)
Q Consensus 74 ~~~~ 77 (78)
.+|+
T Consensus 102 ~ad~ 105 (456)
T 4dcu_A 102 EADV 105 (456)
T ss_dssp HCSE
T ss_pred hCCE
Confidence 8876
No 143
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.25 E-value=1.3e-12 Score=86.72 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=49.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCc-------hHhhhc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL-------VKTYLS 73 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~-------~~~~~~ 73 (78)
+|+++|+.++|||||++++....+. ....+....+...+.+.+.+.. .+.+|||+|+++|.. + ...+++
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~--l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGE--LGRLRVEKARRVFY 112 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCT--TCCCCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccc--hhHHHHHHHHHHHh
Confidence 4899999999999999999987763 2223333345556667776542 788999999999876 6 345788
Q ss_pred cCccC
Q psy2599 74 SANIS 78 (78)
Q Consensus 74 ~~~~~ 78 (78)
.+|++
T Consensus 113 ~aD~v 117 (423)
T 3qq5_A 113 RADCG 117 (423)
T ss_dssp SCSEE
T ss_pred cCCEE
Confidence 88764
No 144
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.24 E-value=1.2e-11 Score=78.72 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=48.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCC-CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC----------CcCchHhh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTR-QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES----------SAGLVKTY 71 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~----------~~~~~~~~ 71 (78)
|.++|.++||||||++++...++.. ...|....+.....+..+ ....+.+|||+|+.++. . .+..+
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~--~~~~~ 89 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE--IAKQS 89 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH--HHHHH
T ss_pred EEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH--HHHHH
Confidence 7899999999999999999887642 122211122222222332 25678899999997765 5 56677
Q ss_pred hccCcc
Q psy2599 72 LSSANI 77 (78)
Q Consensus 72 ~~~~~~ 77 (78)
++++|+
T Consensus 90 l~~aD~ 95 (308)
T 3iev_A 90 LEEADV 95 (308)
T ss_dssp HHHCSE
T ss_pred hhcCCE
Confidence 777775
No 145
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.20 E-value=1.7e-11 Score=86.72 Aligned_cols=75 Identities=19% Similarity=0.083 Sum_probs=53.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhC------------CCCC----C--CCCCCCceeEEEEEE------------ECCEEEEE
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD------------EFTR----Q--YYPTSGPDFHLKLLT------------IQNRGVKL 51 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~------------~~~~----~--~~~t~~~~~~~~~i~------------~~~~~~~l 51 (78)
+|+++|..++|||||+.++... .+.+ + .-.|+........+. .+++.+.+
T Consensus 21 nI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i 100 (842)
T 1n0u_A 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 100 (842)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceE
Confidence 4889999999999999999853 2211 1 123444333222232 24558899
Q ss_pred EEecCCCCCccCCcCchHhhhccCccC
Q psy2599 52 ILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 52 ~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+||||+|+.+|.. .+..+++.+|+|
T Consensus 101 ~liDTPG~~df~~--~~~~~l~~aD~a 125 (842)
T 1n0u_A 101 NLIDSPGHVDFSS--EVTAALRVTDGA 125 (842)
T ss_dssp EEECCCCCCSSCH--HHHHHHHTCSEE
T ss_pred EEEECcCchhhHH--HHHHHHHhCCEE
Confidence 9999999999999 999999999875
No 146
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.18 E-value=2.2e-11 Score=79.95 Aligned_cols=75 Identities=8% Similarity=-0.024 Sum_probs=49.1
Q ss_pred CceeEcCCCCCHHHHHHHHH---hCCCCCCCCC--CCCceeEEEEEEE-------------C--C----EEEEEEEecCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYT---QDEFTRQYYP--TSGPDFHLKLLTI-------------Q--N----RGVKLILWDIG 57 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~---~~~~~~~~~~--t~~~~~~~~~i~~-------------~--~----~~~~l~iwD~~ 57 (78)
+++++|..++|||||+.++. .+.+.+++.+ |+...|....+.. + + ....+.+|||+
T Consensus 10 ~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtP 89 (408)
T 1s0u_A 10 NIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSP 89 (408)
T ss_dssp EEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECC
Confidence 58899999999999999998 3445555555 7766664444422 1 1 23789999999
Q ss_pred CCCccCCcCchHhhhccCccC
Q psy2599 58 GKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 58 G~~~~~~~~~~~~~~~~~~~~ 78 (78)
|+++|.. ........+|+|
T Consensus 90 Gh~~f~~--~~~~~~~~~D~~ 108 (408)
T 1s0u_A 90 GHETLMA--TMLSGASLMDGA 108 (408)
T ss_dssp SHHHHHH--HHHTTCSCCSEE
T ss_pred CHHHHHH--HHHHhHhhCCEE
Confidence 9998876 555555555653
No 147
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.17 E-value=7.8e-12 Score=84.77 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=48.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCCC------------------CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFTR------------------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~~------------------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+++++|..++|||||+.++... .+.. ...++.|..+....+.+..+.+.+.||||+|+++
T Consensus 15 ~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~d 94 (529)
T 2h5e_A 15 TFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHED 94 (529)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChh
Confidence 4889999999999999999852 1210 0011222222111122222456789999999999
Q ss_pred cCCcCchHhhhccCccC
Q psy2599 62 ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (78)
|.. ....+++.+|+|
T Consensus 95 f~~--~~~~~l~~aD~~ 109 (529)
T 2h5e_A 95 FSE--DTYRTLTAVDCC 109 (529)
T ss_dssp CCH--HHHHGGGGCSEE
T ss_pred HHH--HHHHHHHHCCEE
Confidence 998 888999998874
No 148
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.17 E-value=1.6e-11 Score=80.17 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=46.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCC--CCCCceeEEEEEEECCE---------------EEEEEEecCCCCCccC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYY--PTSGPDFHLKLLTIQNR---------------GVKLILWDIGGKANES 63 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~--~t~~~~~~~~~i~~~~~---------------~~~l~iwD~~G~~~~~ 63 (78)
+++++||.++||||||++++....+..... +|+..+.. .+.+++. ...+++|||+|+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 368999999999999999999876532222 24443332 2344442 2578999999998763
Q ss_pred ----CcCch---HhhhccCcc
Q psy2599 64 ----SAGLV---KTYLSSANI 77 (78)
Q Consensus 64 ----~~~~~---~~~~~~~~~ 77 (78)
. +. ..+++++|+
T Consensus 81 ~~~~g--l~~~fl~~ir~ad~ 99 (363)
T 1jal_A 81 SKGEG--LGNKFLANIRETDA 99 (363)
T ss_dssp HHHGG--GTCCHHHHHHTCSE
T ss_pred cccch--HHHHHHHHHHhcCe
Confidence 2 33 235677765
No 149
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.16 E-value=3.5e-12 Score=76.07 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=34.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
+++++|++|||||||++++....+...+.|+.|.......+.+++ .+.+||++|..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~ 83 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYG 83 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCc
Confidence 378999999999999999998776555667777655444444444 57899999985
No 150
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.16 E-value=1.7e-12 Score=87.65 Aligned_cols=73 Identities=10% Similarity=0.036 Sum_probs=52.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|..++|||||+.++....+.....+.+..+.....+..++ ..+.+|||+|++.|.. ++..+++.+|++
T Consensus 6 ~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~--~~~~~~~~aD~a 78 (501)
T 1zo1_I 6 VVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTS--MRARGAQATDIV 78 (501)
T ss_dssp CEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTT--SBCSSSBSCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHH--HHHHHHhhCCEE
Confidence 478999999999999999987665544333333322222233344 3578999999999999 988888888764
No 151
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.16 E-value=3.7e-12 Score=83.52 Aligned_cols=75 Identities=12% Similarity=-0.003 Sum_probs=51.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--------CCCCC-------CCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--------EFTRQ-------YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAG 66 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--------~~~~~-------~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~ 66 (78)
+++++|..++|||||+.++... .|... ...+.|..+....+.++.....+.||||+|+++|..
T Consensus 13 ~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~-- 90 (405)
T 2c78_A 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK-- 90 (405)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH--
T ss_pred EEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHH--
Confidence 5899999999999999999862 22210 000122222223334444556789999999999988
Q ss_pred chHhhhccCccC
Q psy2599 67 LVKTYLSSANIS 78 (78)
Q Consensus 67 ~~~~~~~~~~~~ 78 (78)
....+++.+|++
T Consensus 91 ~~~~~~~~aD~~ 102 (405)
T 2c78_A 91 NMITGAAQMDGA 102 (405)
T ss_dssp HHHHHHTTCSSE
T ss_pred HHHHHHHHCCEE
Confidence 888899988874
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.16 E-value=2.9e-11 Score=79.99 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=38.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANES 63 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~ 63 (78)
+++++|++|||||||++++....+. ....|....+.....+.+++. .+.+|||+|+.++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~ 242 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKS 242 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC----
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCcccc
Confidence 5789999999999999999987642 122233334444556778877 46789999985543
No 153
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.16 E-value=3.2e-11 Score=79.52 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=42.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCE---------------EEEEEEecCCCCCccCCc
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNR---------------GVKLILWDIGGKANESSA 65 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~---------------~~~l~iwD~~G~~~~~~~ 65 (78)
+++.+||.++||||||++++....+.....|....+.....+.+++. ...+.+||++|..++.+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~ 102 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHN 102 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccch
Confidence 46899999999999999999987664444443333343445555542 235899999998875420
Q ss_pred --C---chHhhhccCcc
Q psy2599 66 --G---LVKTYLSSANI 77 (78)
Q Consensus 66 --~---~~~~~~~~~~~ 77 (78)
| ....+++++|+
T Consensus 103 ~~glg~~~l~~ir~aD~ 119 (396)
T 2ohf_A 103 GQGLGNAFLSHISACDG 119 (396)
T ss_dssp ----CCHHHHHHHTSSS
T ss_pred hhHHHHHHHHHHHhcCe
Confidence 0 34567777775
No 154
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.16 E-value=6.2e-12 Score=84.13 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=38.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~ 64 (78)
+++++|+++||||||++++....+. ....|+...++....+.+++. .+.+|||+|..++..
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSD 287 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC---------
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchh
Confidence 5899999999999999999976532 223444455665566677775 458999999877654
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.15 E-value=1.3e-11 Score=81.71 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=48.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC--CCCC----------CCCCCCcee-------------------EEEEEEECCEEEE
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE--FTRQ----------YYPTSGPDF-------------------HLKLLTIQNRGVK 50 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~--~~~~----------~~~t~~~~~-------------------~~~~i~~~~~~~~ 50 (78)
+++++|..++|||||+.++..+. +... ..+|.+.++ ......+......
T Consensus 26 ~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~ 105 (434)
T 1zun_B 26 RFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRK 105 (434)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEE
T ss_pred EEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCce
Confidence 58999999999999999998643 1111 112221111 0001112223457
Q ss_pred EEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 51 LILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 51 l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+.||||+|+++|.. .+..+++.+|++
T Consensus 106 ~~iiDtpGh~~f~~--~~~~~~~~aD~~ 131 (434)
T 1zun_B 106 FIIADTPGHEQYTR--NMATGASTCDLA 131 (434)
T ss_dssp EEEEECCCSGGGHH--HHHHHHTTCSEE
T ss_pred EEEEECCChHHHHH--HHHHHHhhCCEE
Confidence 89999999999988 888889988874
No 156
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.15 E-value=9.9e-12 Score=83.55 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=52.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC--CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC-ccCCc----C--chHhhh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF--TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA-NESSA----G--LVKTYL 72 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~-~~~~~----~--~~~~~~ 72 (78)
+|+++|.++||||||++++...++ ...+..| ..++....+.+++. .+.+|||+|.+ ++... | ....++
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gT-T~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGT-TRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCC-SSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred EEEEECcCCCcHHHHHHHHHCCCCCccCCCCCe-eeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 589999999999999999998753 3344433 45666677778765 57899999998 65420 0 234677
Q ss_pred ccCcc
Q psy2599 73 SSANI 77 (78)
Q Consensus 73 ~~~~~ 77 (78)
+.+|+
T Consensus 322 ~~aD~ 326 (482)
T 1xzp_A 322 EKADI 326 (482)
T ss_dssp HHCSE
T ss_pred hcccE
Confidence 77765
No 157
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.14 E-value=1.2e-11 Score=83.02 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=48.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC-------CCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE-------FTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSS 74 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~-------~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~ 74 (78)
+++++|..++|||||+.++.... +..+..+.+..+.....+.+++ ..+.+|||+|+++|.. .+..+++.
T Consensus 21 ~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~--~~~~~~~~ 96 (482)
T 1wb1_A 21 NLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIR--AVVSAADI 96 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHH--HHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHH--HHHHHHhh
Confidence 48899999999999999999765 3333333222222222344544 5789999999999988 88888888
Q ss_pred CccC
Q psy2599 75 ANIS 78 (78)
Q Consensus 75 ~~~~ 78 (78)
+|+|
T Consensus 97 aD~~ 100 (482)
T 1wb1_A 97 IDLA 100 (482)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 8874
No 158
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.14 E-value=1.4e-10 Score=76.03 Aligned_cols=70 Identities=7% Similarity=-0.029 Sum_probs=49.5
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEE---------------------E---CCEEEEEEEecC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLT---------------------I---QNRGVKLILWDI 56 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~---------------------~---~~~~~~l~iwD~ 56 (78)
++|+++|+.++|||||++++........ .+ +....+. . ......+.+|||
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 4689999999999999999987533220 11 1111110 0 123478999999
Q ss_pred CCCCccCCcCchHhhhccCccC
Q psy2599 57 GGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 57 ~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+++|.. .+..+++.+|++
T Consensus 83 PGh~~~~~--~~~~~~~~~D~~ 102 (403)
T 3sjy_A 83 PGHEVLMA--TMLSGAALMDGA 102 (403)
T ss_dssp CCCGGGHH--HHHHHHTTCSEE
T ss_pred CCcHHHHH--HHHHHHhhCCEE
Confidence 99999999 888899988874
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.13 E-value=4.8e-12 Score=83.76 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=49.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCCCC-------------------------------CCCCCCceeEEEEEEECCEE
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFTRQ-------------------------------YYPTSGPDFHLKLLTIQNRG 48 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~~~-------------------------------~~~t~~~~~~~~~i~~~~~~ 48 (78)
+++++|..++|||||+.++... .+.+. .-.|+. .... .++...
T Consensus 8 ~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~--~~~~--~~~~~~ 83 (435)
T 1jny_A 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTIN--LTFM--RFETKK 83 (435)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------C--EEECSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeE--eeEE--EEecCC
Confidence 5899999999999999999864 34321 112332 2112 233345
Q ss_pred EEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 49 VKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 49 ~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
..+.||||+|+++|.. .+..+++.+|+|
T Consensus 84 ~~~~iiDtpG~~~f~~--~~~~~~~~aD~~ 111 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVK--NMITGASQADAA 111 (435)
T ss_dssp CEEEECCCSSSTTHHH--HHHHTSSCCSEE
T ss_pred eEEEEEECCCcHHHHH--HHHhhhhhcCEE
Confidence 6789999999999998 888999998875
No 160
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.12 E-value=1.3e-11 Score=84.83 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=45.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCC-----CCC------CCCCCceeEEEEEEE-----CCEEEEEEEecCCCCCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFT-----RQY------YPTSGPDFHLKLLTI-----QNRGVKLILWDIGGKANES 63 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~-----~~~------~~t~~~~~~~~~i~~-----~~~~~~l~iwD~~G~~~~~ 63 (78)
+++++|..++|||||+.++... .+. ..+ ..+.|..+....+.+ +++.+.++||||+|+++|.
T Consensus 6 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~ 85 (599)
T 3cb4_D 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFS 85 (599)
T ss_dssp EEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHH
Confidence 4789999999999999999852 221 111 112333333222222 5667999999999999999
Q ss_pred CcCchHhhhccCccC
Q psy2599 64 SAGLVKTYLSSANIS 78 (78)
Q Consensus 64 ~~~~~~~~~~~~~~~ 78 (78)
. .+..+++.+|+|
T Consensus 86 ~--ev~~~l~~aD~a 98 (599)
T 3cb4_D 86 Y--EVSRSLAACEGA 98 (599)
T ss_dssp H--HHHHHHHHCSEE
T ss_pred H--HHHHHHHHCCEE
Confidence 8 899999998875
No 161
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.12 E-value=5.4e-11 Score=78.11 Aligned_cols=75 Identities=11% Similarity=-0.001 Sum_probs=51.0
Q ss_pred CceeEcCCCCCHHHHHHHHHh---CCCCCCCCC--CCCceeEEEEEEEC---------------C----EEEEEEEecCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ---DEFTRQYYP--TSGPDFHLKLLTIQ---------------N----RGVKLILWDIG 57 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~---~~~~~~~~~--t~~~~~~~~~i~~~---------------~----~~~~l~iwD~~ 57 (78)
+++++|..++|||||+.++.. +.+.+++.+ |+...+....+... + ....+.||||+
T Consensus 12 ~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtP 91 (410)
T 1kk1_A 12 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAP 91 (410)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECC
Confidence 578999999999999999983 345555555 66655544333221 1 13789999999
Q ss_pred CCCccCCcCchHhhhccCccC
Q psy2599 58 GKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 58 G~~~~~~~~~~~~~~~~~~~~ 78 (78)
|+++|.. ........+|+|
T Consensus 92 Gh~~f~~--~~~~~~~~~D~~ 110 (410)
T 1kk1_A 92 GHEALMT--TMLAGASLMDGA 110 (410)
T ss_dssp SHHHHHH--HHHHCGGGCSEE
T ss_pred ChHHHHH--HHHhhhhhCCEE
Confidence 9998876 555555555653
No 162
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.12 E-value=1.7e-11 Score=76.72 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=22.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT 26 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~ 26 (78)
+|+++|+++||||||++++.+..+.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 5899999999999999999988874
No 163
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.12 E-value=2.1e-11 Score=84.42 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=51.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCC----------------CCceeEEEEEEECCEEEEEEEecCCCCCccCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPT----------------SGPDFHLKLLTIQNRGVKLILWDIGGKANESSA 65 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t----------------~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~ 65 (78)
+++++|..|+|||||+.++...........+ .+..+..+...+....+.++||||+|+++|..
T Consensus 11 ~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~- 89 (665)
T 2dy1_A 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG- 89 (665)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH-
T ss_pred EEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHH-
Confidence 3789999999999999999843322111110 12222233333433467889999999999998
Q ss_pred CchHhhhccCccC
Q psy2599 66 GLVKTYLSSANIS 78 (78)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (78)
.+..+++.+|++
T Consensus 90 -~~~~~l~~ad~~ 101 (665)
T 2dy1_A 90 -EIRGALEAADAA 101 (665)
T ss_dssp -HHHHHHHHCSEE
T ss_pred -HHHHHHhhcCcE
Confidence 899999988864
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.11 E-value=6.8e-12 Score=86.24 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=50.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCC--CC-----------------------------CCCCCCceeEEEEEEECCEEE
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFT--RQ-----------------------------YYPTSGPDFHLKLLTIQNRGV 49 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~--~~-----------------------------~~~t~~~~~~~~~i~~~~~~~ 49 (78)
++|+++|..++|||||+.+++..... .. ..+.+..+.....+. ....
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~--~~~~ 245 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS--THRA 245 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE--CSSC
T ss_pred eEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe--cCCc
Confidence 46899999999999999999855321 10 001111122122222 3446
Q ss_pred EEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 50 KLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 50 ~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.+.||||+|+++|.. .+..+++.+|++
T Consensus 246 ~~~iiDTPG~e~f~~--~~~~~~~~aD~~ 272 (611)
T 3izq_1 246 NFTIVDAPGHRDFVP--NAIMGISQADMA 272 (611)
T ss_dssp EEEEEECCSSSCHHH--HHTTTSSCCSEE
T ss_pred eEEEEECCCCcccHH--HHHHHHhhcCce
Confidence 789999999999998 888889988874
No 165
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.10 E-value=9e-12 Score=85.36 Aligned_cols=73 Identities=14% Similarity=-0.014 Sum_probs=34.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhC-------------------------------CCCCCCCCCCCceeEEEEEEECCEEEE
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD-------------------------------EFTRQYYPTSGPDFHLKLLTIQNRGVK 50 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~i~~~~~~~~ 50 (78)
+|+++|..++|||||+.+++.. .+..+..+.+..+.....+.. ....
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~--~~~~ 256 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES--DKKI 256 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--CCeE
Confidence 5899999999999999999531 111111222222332222222 3467
Q ss_pred EEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 51 LILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 51 l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+.||||+|+++|.. .+..+++.+|+|
T Consensus 257 i~iiDTPGh~~f~~--~~~~~~~~aD~a 282 (592)
T 3mca_A 257 YEIGDAPGHRDFIS--GMIAGASSADFA 282 (592)
T ss_dssp --CCEEESSSEEEE--ECCC-------C
T ss_pred EEEEECCChHHHHH--HHHHHHhhCCEE
Confidence 89999999999998 888888888875
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.10 E-value=6.8e-12 Score=82.21 Aligned_cols=76 Identities=12% Similarity=0.042 Sum_probs=51.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC-------CCCCC-------CCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD-------EFTRQ-------YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAG 66 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~-------~~~~~-------~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~ 66 (78)
++++++|..++|||||+.++... .|... .....|.......+.+......+.||||+|+++|..
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~-- 81 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK-- 81 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH--
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH--
Confidence 46899999999999999999863 12110 000112222222233444456788999999999988
Q ss_pred chHhhhccCccC
Q psy2599 67 LVKTYLSSANIS 78 (78)
Q Consensus 67 ~~~~~~~~~~~~ 78 (78)
.+..+++.+|+|
T Consensus 82 ~~~~~~~~aD~~ 93 (397)
T 1d2e_A 82 NMITGTAPLDGC 93 (397)
T ss_dssp HHHHTSSCCSEE
T ss_pred HHHhhHhhCCEE
Confidence 888889988874
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.09 E-value=2.2e-11 Score=82.60 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=49.3
Q ss_pred CceeEcCCCCCHHHHHHHHHh------------------CCCCC----C--CCCCCCceeEEEEEEECCEEEEEEEecCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ------------------DEFTR----Q--YYPTSGPDFHLKLLTIQNRGVKLILWDIG 57 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~------------------~~~~~----~--~~~t~~~~~~~~~i~~~~~~~~l~iwD~~ 57 (78)
+|+++|.+++|||||+.++.. ..+.+ + .-.|+. .....+.. ..+.+.||||+
T Consensus 15 ~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~--~~~~~~~~--~~~~i~liDTP 90 (528)
T 3tr5_A 15 TFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVT--TSVMQFPY--KDYLINLLDTP 90 (528)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSS--SSEEEEEE--TTEEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEE--EeEEEEEe--CCEEEEEEECC
Confidence 478999999999999999961 11110 0 111222 22233334 35678999999
Q ss_pred CCCccCCcCchHhhhccCccC
Q psy2599 58 GKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 58 G~~~~~~~~~~~~~~~~~~~~ 78 (78)
|+++|.. .+..+++.+|+|
T Consensus 91 G~~df~~--~~~~~l~~aD~a 109 (528)
T 3tr5_A 91 GHADFTE--DTYRTLTAVDSA 109 (528)
T ss_dssp CSTTCCH--HHHHGGGGCSEE
T ss_pred CchhHHH--HHHHHHHhCCEE
Confidence 9999999 999999999875
No 168
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.08 E-value=7.4e-13 Score=80.00 Aligned_cols=71 Identities=8% Similarity=0.053 Sum_probs=48.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeE------------EEEEEEC-CEEEEEEEecCCCCCccCCcCch
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFH------------LKLLTIQ-NRGVKLILWDIGGKANESSAGLV 68 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~------------~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~ 68 (78)
+++++|++|||||||+.+++...+...+.++++.++. .+.+.++ +..+.+..||+ ++.++. +.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~--l~ 115 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLV--GHALED--LN 115 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHH--HHHHTT--SC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHH--HHHHHH--Hh
Confidence 4788999999999999999988777667777776654 2444443 43455667776 556665 54
Q ss_pred ----HhhhccCc
Q psy2599 69 ----KTYLSSAN 76 (78)
Q Consensus 69 ----~~~~~~~~ 76 (78)
+.++.+++
T Consensus 116 ~~~~d~~~id~~ 127 (226)
T 2hf9_A 116 LDEIDLLFIENV 127 (226)
T ss_dssp GGGCSEEEEECC
T ss_pred cCCCCEEEEeCC
Confidence 44454443
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.07 E-value=1.4e-10 Score=75.52 Aligned_cols=55 Identities=16% Similarity=0.036 Sum_probs=36.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~ 59 (78)
++++|.+|+|||||++++.+..+.....+....+.....+.+++. .+.+|||+|.
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~ 236 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGF 236 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCB
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCc
Confidence 779999999999999999987763222222223455677788874 5689999997
No 170
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.07 E-value=1.4e-11 Score=84.58 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=51.4
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCC----CCCCCCceeEEEEE------------EECCEEEEEEEecCCCCCccCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQ----YYPTSGPDFHLKLL------------TIQNRGVKLILWDIGGKANESSA 65 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~----~~~t~~~~~~~~~i------------~~~~~~~~l~iwD~~G~~~~~~~ 65 (78)
+++++|..++|||||+.++....+... ..++++..+..... .++.....+.||||+|+++|..
T Consensus 7 ~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~- 85 (594)
T 1g7s_A 7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT- 85 (594)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT-
T ss_pred EEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHH-
Confidence 478999999999999999987654321 23455543311100 0001122589999999999999
Q ss_pred CchHhhhccCccC
Q psy2599 66 GLVKTYLSSANIS 78 (78)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (78)
++..+++.+|+|
T Consensus 86 -~~~r~~~~aD~a 97 (594)
T 1g7s_A 86 -LRKRGGALADLA 97 (594)
T ss_dssp -SBCSSSBSCSEE
T ss_pred -HHHHHHhhCCEE
Confidence 999998888874
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.06 E-value=6.3e-11 Score=79.14 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=37.3
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCCC-------------------------------CCCCCCCceeEEEEEEECCEE
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFTR-------------------------------QYYPTSGPDFHLKLLTIQNRG 48 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~~-------------------------------~~~~t~~~~~~~~~i~~~~~~ 48 (78)
+++++|..++|||||+.++.. +.+.+ +.-+|+...+ ..+..+ .
T Consensus 45 ~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~~~--~ 120 (467)
T 1r5b_A 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFETE--H 120 (467)
T ss_dssp EEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEECS--S
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEecC--C
Confidence 589999999999999999864 33211 1123333222 223333 3
Q ss_pred EEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 49 VKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 49 ~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
..+.||||+|+++|.. .+..+++.+|+|
T Consensus 121 ~~~~iiDtPGh~~f~~--~~~~~~~~aD~~ 148 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVT--NMINGASQADIG 148 (467)
T ss_dssp EEEEECCCCC-------------TTSCSEE
T ss_pred eEEEEEECCCcHHHHH--HHHhhcccCCEE
Confidence 5789999999999998 888888888874
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.06 E-value=4.2e-11 Score=79.83 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=51.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCCC-------------------------------CCCCCCCceeEEEEEEECCEE
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFTR-------------------------------QYYPTSGPDFHLKLLTIQNRG 48 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~i~~~~~~ 48 (78)
+++++|..++|||||+.++... .+.+ +.-.|+...+ ..+ +...
T Consensus 9 ~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~~~--~~~~ 84 (458)
T 1f60_A 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--WKF--ETPK 84 (458)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--EEE--ECSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--EEE--ecCC
Confidence 5899999999999999999853 2321 0123443333 223 3344
Q ss_pred EEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 49 VKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 49 ~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
..+.||||+|+++|.. .+..+++.+|++
T Consensus 85 ~~~~iiDtPGh~~f~~--~~~~~~~~aD~~ 112 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIK--NMITGTSQADCA 112 (458)
T ss_dssp EEEEEEECCCCTTHHH--HHHHSSSCCSEE
T ss_pred ceEEEEECCCcHHHHH--HHHhhhhhCCEE
Confidence 6789999999999998 888889988874
No 173
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.05 E-value=3e-11 Score=78.80 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=48.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+++++|..++|||||+.++. +.-+|+...+ ..+.. ....+.||||+|+++|.. .....++.+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~~~~~--~~~~i~iiDtPGh~~f~~--~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--YNNDK--EGRNMVFVDAHSYPKTLK--SLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--EEECS--SSSEEEEEECTTTTTCHH--HHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--EEEec--CCeEEEEEECCChHHHHH--HHHHHHHHCCEE
Confidence 57899999999999999998 3345554433 22333 344689999999999987 777778888875
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.04 E-value=2.2e-10 Score=74.00 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT 26 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~ 26 (78)
+|+|+|++++|||||++++.+..|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcC
Confidence 4789999999999999999998773
No 175
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.02 E-value=2.9e-10 Score=79.22 Aligned_cols=73 Identities=8% Similarity=-0.077 Sum_probs=51.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCCC------------------CCCCCCCceeEEEEEEEC-----CEEEEEEEecC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFTR------------------QYYPTSGPDFHLKLLTIQ-----NRGVKLILWDI 56 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~~------------------~~~~t~~~~~~~~~i~~~-----~~~~~l~iwD~ 56 (78)
+++++|..++|||||+.++... .+.. +.-+|+.... ..+.++ ++.+.+.||||
T Consensus 12 ~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 12 NIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA--TTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece--EEEEECCccccCCceeEEEEeC
Confidence 4889999999999999999742 2211 1112332211 122222 34588999999
Q ss_pred CCCCccCCcCchHhhhccCccC
Q psy2599 57 GGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 57 ~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+.+|.. .+..+++.+|+|
T Consensus 90 PG~~df~~--~~~~~l~~aD~a 109 (704)
T 2rdo_7 90 PGHVDFTI--EVERSMRVLDGA 109 (704)
T ss_pred CCccchHH--HHHHHHHHCCEE
Confidence 99999998 899999999875
No 176
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=2.8e-10 Score=74.89 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=36.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCCC-CCCC-CCCCceeEEEEE-------------------EECC-EEEEEEEecCCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEFT-RQYY-PTSGPDFHLKLL-------------------TIQN-RGVKLILWDIGG 58 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~-~t~~~~~~~~~i-------------------~~~~-~~~~l~iwD~~G 58 (78)
|+++++|.++||||||++++...... ..+. .|+........+ .+++ +.+.+.+|||+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 57899999999999999999976632 1221 122222211111 1233 357899999999
Q ss_pred CCc----cCCcCchHh---hhccCcc
Q psy2599 59 KAN----ESSAGLVKT---YLSSANI 77 (78)
Q Consensus 59 ~~~----~~~~~~~~~---~~~~~~~ 77 (78)
..+ .+. +... +++++|+
T Consensus 81 ~~~~a~~~~~--l~~~~l~~i~~aD~ 104 (397)
T 1wxq_A 81 LVPGAHEGRG--LGNKFLDDLRMASA 104 (397)
T ss_dssp ----------------CCCSSTTCSE
T ss_pred cccchhhhhh--HHHHHHHHHhcCCE
Confidence 864 333 4443 4566665
No 177
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.02 E-value=2.1e-10 Score=78.87 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=47.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhC--CCCC-----CCCCC------CCceeEE--EEEEE---CCEEEEEEEecCCCCCccC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD--EFTR-----QYYPT------SGPDFHL--KLLTI---QNRGVKLILWDIGGKANES 63 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~--~~~~-----~~~~t------~~~~~~~--~~i~~---~~~~~~l~iwD~~G~~~~~ 63 (78)
+++++|..++|||||+.++... .+.. .+..+ .|..+.. ..+.+ +++.+.++||||+|+++|.
T Consensus 8 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~ 87 (600)
T 2ywe_A 8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFS 87 (600)
T ss_dssp EEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHH
Confidence 4789999999999999999752 2211 11111 1111111 11222 5667899999999999999
Q ss_pred CcCchHhhhccCccC
Q psy2599 64 SAGLVKTYLSSANIS 78 (78)
Q Consensus 64 ~~~~~~~~~~~~~~~ 78 (78)
. .+..+++.+|+|
T Consensus 88 ~--ev~r~l~~aD~a 100 (600)
T 2ywe_A 88 Y--EVSRALAACEGA 100 (600)
T ss_dssp H--HHHHHHHTCSEE
T ss_pred H--HHHHHHHhCCEE
Confidence 8 888899998875
No 178
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.99 E-value=5.4e-10 Score=72.13 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=43.2
Q ss_pred HHHHHhCCCCCC-------CCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 17 STRYTQDEFTRQ-------YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 17 ~~~~~~~~~~~~-------~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+.|+....|.+. ..||+|.. ...+.++ .+++++||++||+++++ +|++||++++|+
T Consensus 132 l~Ri~~~~Y~PT~~Dilr~r~~TiGi~--~~~~~~~--~v~l~iwDtgGQe~~R~--~w~~yf~~~~~i 194 (327)
T 3ohm_A 132 LDRVADPSYLPTQQDVLRVRVPTTGII--EYPFDLQ--SVIFRMVDVGGQRSERR--KWIHCFENVTSI 194 (327)
T ss_dssp HHHHHSTTCCCCHHHHTTCCCCCCSEE--EEEEEET--TEEEEEEEECCSHHHHT--TGGGGCSSCSEE
T ss_pred HHHHhccCCCccccchhcccCceeeEE--EEEEEee--ceeeEEEEcCCchhHHH--HHHHHhCCCCEE
Confidence 356666666555 67888853 4445554 58899999999999999 999999999874
No 179
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.99 E-value=1.3e-10 Score=73.81 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=44.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC-CCCCC-CCCceeEEEEEEECCEEEEEEEecCCCCC---------ccCCcCchHhh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT-RQYYP-TSGPDFHLKLLTIQNRGVKLILWDIGGKA---------NESSAGLVKTY 71 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~-t~~~~~~~~~i~~~~~~~~l~iwD~~G~~---------~~~~~~~~~~~ 71 (78)
+.++|.+|||||||++++....+. ....| |. .+.....+.. ....+.+|||+|.. .+.. ....+
T Consensus 11 VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tT-r~~~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~--~~~~~ 85 (301)
T 1ega_A 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTT-RHRIVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNK--AASSS 85 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHTCSEEECCCCSSCC-SSCEEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTC--CTTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCCCCcc-eeeEEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHH--HHHHH
Confidence 789999999999999999987653 11122 22 1111122222 24567899999998 3444 44556
Q ss_pred hccCcc
Q psy2599 72 LSSANI 77 (78)
Q Consensus 72 ~~~~~~ 77 (78)
++.+|+
T Consensus 86 l~~~D~ 91 (301)
T 1ega_A 86 IGDVEL 91 (301)
T ss_dssp CCCEEE
T ss_pred HhcCCE
Confidence 666654
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.97 E-value=3.4e-10 Score=71.39 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=22.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF 25 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~ 25 (78)
+|+|+|+.++|||||++++....+
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 488999999999999999998876
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.97 E-value=3.6e-11 Score=87.61 Aligned_cols=75 Identities=11% Similarity=-0.015 Sum_probs=49.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhC-------CCCC-------CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD-------EFTR-------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGL 67 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~-------~~~~-------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~ 67 (78)
+|+++|..++|||||+.++... .+.. ....+.|..+....+.++.....+.||||+|+++|.. .
T Consensus 298 nIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~--~ 375 (1289)
T 3avx_A 298 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK--N 375 (1289)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH--H
T ss_pred EEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH--H
Confidence 5889999999999999999863 1110 1122334333222334444557789999999999988 8
Q ss_pred hHhhhccCccC
Q psy2599 68 VKTYLSSANIS 78 (78)
Q Consensus 68 ~~~~~~~~~~~ 78 (78)
...+++.+|+|
T Consensus 376 mi~gas~AD~a 386 (1289)
T 3avx_A 376 MITGAAQMDGA 386 (1289)
T ss_dssp HHHTSCCCSEE
T ss_pred HHHHHhhCCEE
Confidence 88889988874
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.96 E-value=2.6e-10 Score=79.33 Aligned_cols=71 Identities=8% Similarity=0.001 Sum_probs=48.0
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCCC------------------CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFTR------------------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+++++|..++|||||+.++.. +.+.. .+.+|+.... ..+..+ .+.+.||||+|+.+
T Consensus 14 ~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~--~~~~~~--~~~i~liDTPG~~d 89 (691)
T 1dar_A 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV--TTCFWK--DHRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCE--EEEEET--TEEEEEECCCSSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccce--EEEEEC--CeEEEEEECcCccc
Confidence 488999999999999999983 22210 2234443322 223333 46789999999999
Q ss_pred cCCcCchHhhhccCccC
Q psy2599 62 ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (78)
|.. .+..+++.+|++
T Consensus 90 f~~--~~~~~l~~aD~~ 104 (691)
T 1dar_A 90 FTI--EVERSMRVLDGA 104 (691)
T ss_dssp CHH--HHHHHHHHCSEE
T ss_pred hHH--HHHHHHHHCCEE
Confidence 999 899999988874
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=8.8e-10 Score=73.06 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=34.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCC--------CCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQY--------YPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~--------~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
+|++||++|+|||||++.+++..++... .+|++.+.....+..++....+.+||++|..++
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 4689999999999999999987763221 233332221222222344568999999998764
No 184
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.92 E-value=1.8e-09 Score=70.62 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=45.8
Q ss_pred CCceeEcCCCCCHHHHHHHHHhCCC-CCCCC-CCCCceeEEEEEEECC-------------------EEEEEEEecCCCC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQDEF-TRQYY-PTSGPDFHLKLLTIQN-------------------RGVKLILWDIGGK 59 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~-~t~~~~~~~~~i~~~~-------------------~~~~l~iwD~~G~ 59 (78)
+++.++|.++||||||++++..... ..++. .|+..+.. .+.+.+ ....+++|||+|+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 4689999999999999999986542 12221 12322221 122322 2457999999999
Q ss_pred CccCCc--CchHh---hhccCcc
Q psy2599 60 ANESSA--GLVKT---YLSSANI 77 (78)
Q Consensus 60 ~~~~~~--~~~~~---~~~~~~~ 77 (78)
.++.+. ++... +++.+|+
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ 102 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAA 102 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSE
T ss_pred cccccccchHHHHHHHHHHhCCE
Confidence 876320 14333 4677764
No 185
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.89 E-value=3.1e-09 Score=68.66 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=39.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
+++++|.+|||||||++++....+.....|....+.....+..+ ...+.+|||+|...+
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDR 227 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCcccc
Confidence 47899999999999999999876532222221122323333333 457899999998664
No 186
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.88 E-value=3.8e-10 Score=73.17 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=40.8
Q ss_pred HHHHhCCCCCC-------CCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 18 TRYTQDEFTRQ-------YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 18 ~~~~~~~~~~~-------~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.|+....|.+. +.||+|... ..+.+ +.++++|||++||++|++ +|.+||++++|+
T Consensus 127 ~Ri~~~~Y~PT~~Dil~~~~~TiGi~~--~~~~~--~~v~l~iwDtaGQe~~R~--~w~~yy~~a~~i 188 (340)
T 4fid_A 127 KRIAMEDYVPTEEDLIHNRTKTTGIHE--YDFVV--KDIPFHLIDVGGQRSERK--XWVSFFSDVDCA 188 (340)
T ss_dssp HHHSSTTCCCCHHHHHHSCCCCCSCEE--EEEES--SSCEEEEEECCSCHHHHH--HHHTTSCSCSEE
T ss_pred HHHhcccCCccccceeecccceeeeEE--EEEEe--eeeeeccccCCCcccccc--cHHHHhccCCEE
Confidence 34444555554 667788544 33444 468899999999999999 999999999874
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.88 E-value=2.2e-09 Score=74.71 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=48.8
Q ss_pred CceeEcCCCCCHHHHHHHHHh--CCCCC------------------CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ--DEFTR------------------QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+++++|..++|||||+.++.. +.+.. +..+|+... ...+..+ .+.+.||||+|+.+
T Consensus 12 ~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~--~~~~~~~--~~~i~liDTPG~~d 87 (693)
T 2xex_A 12 NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA--ATTAAWE--GHRVNIIDTPGHVD 87 (693)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCS--EEEEEET--TEEEEEECCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee--eEEEEEC--CeeEEEEECcCCcc
Confidence 478999999999999999984 33311 011222222 2223343 46789999999999
Q ss_pred cCCcCchHhhhccCccC
Q psy2599 62 ESSAGLVKTYLSSANIS 78 (78)
Q Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (78)
|.. .+..+++.+|++
T Consensus 88 f~~--~~~~~l~~aD~~ 102 (693)
T 2xex_A 88 FTV--EVERSLRVLDGA 102 (693)
T ss_dssp CCH--HHHHHHHHCSEE
T ss_pred hHH--HHHHHHHHCCEE
Confidence 999 899999988864
No 188
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.88 E-value=3.3e-10 Score=73.15 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=22.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT 26 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~ 26 (78)
+|+|+|+++||||||++++....|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred eEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4889999999999999999988874
No 189
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.85 E-value=1.1e-09 Score=70.92 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=46.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC-CCCC-CCCCceeEEEEEEECCEEEEEEEecCCCC----CccCCcCchHhhhcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT-RQYY-PTSGPDFHLKLLTIQNRGVKLILWDIGGK----ANESSAGLVKTYLSS 74 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~-~~~~-~t~~~~~~~~~i~~~~~~~~l~iwD~~G~----~~~~~~~~~~~~~~~ 74 (78)
+|+++|.++||||||+++++..++. ..|. +|.... ...+.+++ ...+.|||++|. +.+.. +...|++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~--~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~--l~~~fl~~ 233 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN--LGMVETDD-GRSFVMADLPGLIEGAHQGVG--LGHQFLRH 233 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC--EEEEECSS-SCEEEEEEHHHHHHHTTCTTT--THHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce--EEEEEeCC-CceEEEecCCCCcccccccch--hHHHHHHH
Confidence 3779999999999999999976542 2232 343333 23345544 246889999995 45666 77777764
No 190
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.83 E-value=1.2e-09 Score=68.32 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=34.5
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+++++|.++||||||++++....... ..++.|.....+.+.++. .+.+|||+|...
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred heEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 68899999999999999999766532 233334333222333332 578999999764
No 191
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=1e-08 Score=67.56 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=41.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCE-------------E--EEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNR-------------G--VKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~-------------~--~~l~iwD~~G~~~ 61 (78)
++.+||.+|||||||++.+..... .....|....+...-.+.+++. . ..+.+||++|...
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 478999999999999999998665 4444443333343445566542 1 3689999999543
No 192
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.74 E-value=1.9e-08 Score=66.50 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=33.5
Q ss_pred CCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 31 PTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 31 ~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
||+|.++ +.+.+++ ++++||||+||++|+. +|+.||++++++
T Consensus 203 ~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~--~w~~yf~~a~~i 244 (402)
T 1azs_C 203 LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERR--KWIQCFNDVTAI 244 (402)
T ss_dssp CCCSEEE--EEEEETT--EEEEEEEECCSGGGGG--GGGGGTTTCCEE
T ss_pred ceeeeEE--EEeecCC--ccceecccchhhhhhh--hhHhhccCCCEE
Confidence 3555543 4556654 8899999999999999 999999999874
No 193
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.71 E-value=2e-08 Score=65.25 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=35.0
Q ss_pred CCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 29 YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 29 ~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+.||+|.+ ...+.++ .+++++||++||++|+. +|+.||++++++
T Consensus 177 ~~~T~Gi~--~~~~~~~--~~~l~iwDt~GQe~~r~--~w~~yf~~a~~i 220 (353)
T 1cip_A 177 RVKTTGIV--ETHFTFK--DLHFKMFDVGGQRSERK--KWIHCFEGVTAI 220 (353)
T ss_dssp CCCCCSEE--EEEEEET--TEEEEEEEECCSGGGGG--GGGGGCTTCSEE
T ss_pred cCceeceE--EEEEeeC--CeeEEEEeCCCchhhhH--HHHHHHhcCCEE
Confidence 45677754 3445554 58899999999999999 999999999873
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.67 E-value=5.8e-09 Score=71.06 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=22.6
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFT 26 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~ 26 (78)
.|+|+|..++|||||++++.+..+.
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCccc
Confidence 4889999999999999999988763
No 195
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.66 E-value=6.8e-09 Score=72.31 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=25.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTS 33 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~ 33 (78)
+|+|+|+.++|||||++.+.+..+ +....|+.
T Consensus 71 ~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 589999999999999999997764 33334443
No 196
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.65 E-value=3.1e-08 Score=64.43 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCCCCCCCCceeE---------EEEEEECC----EEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 26 TRQYYPTSGPDFH---------LKLLTIQN----RGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 26 ~~~~~~t~~~~~~---------~~~i~~~~----~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
.++|.||++..+. ...+.+++ +.++++||||+||++|+. +|+.||++++++
T Consensus 147 ~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~--~~~~y~~~~~~i 210 (354)
T 2xtz_A 147 DINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERR--KWIHLFEGVTAV 210 (354)
T ss_dssp STTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGG--GTGGGCTTEEEE
T ss_pred cCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhH--HHHHHhCCCCEE
Confidence 4567777643221 22233555 689999999999999999 999999999873
No 197
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=1.8e-09 Score=68.50 Aligned_cols=56 Identities=7% Similarity=-0.042 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 15 CFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 15 sl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+|+.+|+.+.|. ++|.||+|..+ ...+..++ ++.|||+ +++|+. +++.||+++|++
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~---~~~iwD~--qer~~~--l~~~~~~~ad~v 88 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETG---SGVIENV--LHRKNL--LTKPHVANVDQV 88 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSS---SEEEEEE--CCCSCE--ETTTTEESCCEE
T ss_pred cEEEEEEcccccccCCCCCCccEE-EEEEcCCC---eEEEEEE--ccccce--eeccccccCCEE
Confidence 688999999998 89999999655 33332232 7899999 999999 999999999974
No 198
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.54 E-value=1.2e-07 Score=61.76 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=33.5
Q ss_pred HHHHHhCCCCCC-------CCCCCCceeEEEEEEECCEEEEEEEecCCCCCccCCcCchHhhhccCccC
Q psy2599 17 STRYTQDEFTRQ-------YYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 17 ~~~~~~~~~~~~-------~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~~~~~~~ 78 (78)
+.|+....+.+. ..||+|.+. ..+.++ .+++.+|||+||++++. +|..||++++++
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~--~w~~~f~~~~~i 228 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERK--RWFECFDSVTSI 228 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC---------CTTSCTTCCEE
T ss_pred HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhh--hHHHHhCCCCEE
Confidence 455555444332 346677553 445554 48899999999999999 999999999863
No 199
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.53 E-value=6.1e-08 Score=61.20 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=32.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+++++|.++||||||++++...... ...++.+.......+.++. .+.+|||+|-..
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCCC
T ss_pred eEEEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 4789999999999999999975521 1111112211112233333 478999999743
No 200
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.35 E-value=5.2e-07 Score=59.82 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=35.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC-CCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
+.+||.+|+|||||++.+...... ..+..|. .....-.+.+++ ...+.+||++|..
T Consensus 160 VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftT-l~p~~G~V~~~~-~~~~~l~DtpGli 216 (416)
T 1udx_A 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTT-LSPNLGVVEVSE-EERFTLADIPGII 216 (416)
T ss_dssp EEEECCGGGCHHHHHHHHCSSCCEECCCTTCS-SCCEEEEEECSS-SCEEEEEECCCCC
T ss_pred EEEECCCCCcHHHHHHHHHcCCccccCcccce-ecceeeEEEecC-cceEEEEeccccc
Confidence 678999999999999999876421 1222221 112223344443 2457899999974
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.18 E-value=1.3e-07 Score=56.61 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=20.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
.++++|.+|||||||+.++....
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 37889999999999999998653
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.15 E-value=3.6e-06 Score=55.23 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=38.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC-CCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF-TRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
+|.+||.++||||||++.+.+..- ..+|..|. .+...-.+.+++. .+++.||+|--
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT-~~~~~g~~~~~~~--~i~l~D~pGl~ 130 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTT-LVTVPGVIRYKGA--KIQMLDLPGII 130 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSC-CCEEEEEEEETTE--EEEEEECGGGC
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCce-eeeeeEEEEeCCc--EEEEEeCCCcc
Confidence 378999999999999999997543 22333332 3444555667665 46789999963
No 203
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.93 E-value=7.5e-06 Score=53.31 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=34.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCC-----CCCCCCCceeEEEEEEECCEEEEEEEecCCCCCcc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTR-----QYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANE 62 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~-----~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 62 (78)
+++++|.++||||||++.+.+...-. ...+..+.......+.+++. +.+.||+|-...
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~ 224 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINH 224 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCT
T ss_pred eEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcH
Confidence 57899999999999999998642110 00111121122223334333 789999997543
No 204
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.84 E-value=9.8e-06 Score=47.88 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=20.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHhC
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|++.++|++|+|||+|++.....
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999888753
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.77 E-value=2.2e-05 Score=51.11 Aligned_cols=55 Identities=20% Similarity=0.391 Sum_probs=35.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhC------CCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD------EFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~------~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 61 (78)
+++++|.++||||||++.+... .......|.. ......+.++.. +.+.||+|-..
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~~---~~liDtPG~~~ 224 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT--TLDMIEIPLESG---ATLYDTPGIIN 224 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS--SCEEEEEECSTT---CEEEECCSCCC
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe--EEeeEEEEeCCC---eEEEeCCCcCc
Confidence 5889999999999999999864 2211122221 122333444433 68999999654
No 206
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.73 E-value=3.7e-05 Score=53.08 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=34.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCC-----CCCCCceeEEEEEEE-CCEEEEEEEecCCCCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQY-----YPTSGPDFHLKLLTI-QNRGVKLILWDIGGKAN 61 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~-----~~t~~~~~~~~~i~~-~~~~~~l~iwD~~G~~~ 61 (78)
.|.|+|.++||||+|++++.+....-.. ..|.+... ....+ ......+.++||+|-..
T Consensus 40 ~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~--~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 40 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWM--WCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEE--EEEECSSSTTCEEEEEEECCBCC
T ss_pred EEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEE--eecccccCCCceEEEecCCCcCc
Confidence 3779999999999999999976521011 12222211 11111 12234578899999654
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.71 E-value=2.1e-05 Score=49.24 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=19.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
++.++|++|+|||||++.+.+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998643
No 208
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.70 E-value=9.2e-06 Score=55.42 Aligned_cols=70 Identities=10% Similarity=0.044 Sum_probs=43.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh--C----------------CCCC----C--CCCCCCceeEEEEEEECCEEEEEEEecCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ--D----------------EFTR----Q--YYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~--~----------------~~~~----~--~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G 58 (78)
+.|||-.+.|||||..++.. + ...+ + .-.|+... ...+..+ ...++|.||+|
T Consensus 34 iaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~--~~~~~~~--~~~iNlIDTPG 109 (548)
T 3vqt_A 34 FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTS--VMQFPYR--DRVVNLLDTPG 109 (548)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTT--EEEEEET--TEEEEEECCCC
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeec--eEEEEEC--CEEEEEEeCCC
Confidence 78999999999999998851 1 1110 0 11122111 2223343 46678899999
Q ss_pred CCccCCcCchHhhhccCccC
Q psy2599 59 KANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~ 78 (78)
+..|.. =....++-+|+|
T Consensus 110 HvDF~~--Ev~raL~~~DgA 127 (548)
T 3vqt_A 110 HQDFSE--DTYRVLTAVDSA 127 (548)
T ss_dssp GGGCSH--HHHHHHHSCSEE
T ss_pred cHHHHH--HHHHHHHhcCce
Confidence 999987 666667777765
No 209
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.66 E-value=2.7e-05 Score=45.59 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||||++.+..
T Consensus 8 i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999999875
No 210
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.66 E-value=2.6e-05 Score=46.47 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=20.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|++.|.+|+|||+++..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 8899999999999999999864
No 211
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.65 E-value=3e-05 Score=46.35 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=18.9
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|||+|++|+|||+|+.++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999875
No 212
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.65 E-value=2.7e-05 Score=46.46 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=20.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|++.|.+|+|||+++.++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 8899999999999999999864
No 213
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.57 E-value=4.4e-05 Score=45.46 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||||++.+..
T Consensus 7 i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998875
No 214
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.55 E-value=4.7e-05 Score=44.66 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=20.0
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|++.|.+|+||||++..+..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 6789999999999999998875
No 215
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.55 E-value=4.7e-05 Score=46.03 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=20.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|+++|++|+||++.+.++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 8899999999999999998874
No 216
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.52 E-value=5.4e-05 Score=43.27 Aligned_cols=21 Identities=5% Similarity=-0.156 Sum_probs=18.6
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
-|++.|.+|+||||++..+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377899999999999999874
No 217
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.50 E-value=5.7e-05 Score=45.18 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=20.2
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|++.|.+|+|||+++..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999998864
No 218
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.49 E-value=6.4e-05 Score=43.02 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|++.|.+|+|||++...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999998875
No 219
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.49 E-value=6.2e-05 Score=44.20 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+||||+++.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999884
No 220
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.48 E-value=6.7e-05 Score=45.25 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|++.+..
T Consensus 22 ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 67899999999999999885
No 221
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.48 E-value=8.1e-05 Score=42.82 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||+++..+..
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 67899999999999999886
No 222
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.47 E-value=6.8e-05 Score=45.62 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||||++.+...
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 678999999999999998864
No 223
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.46 E-value=7.3e-05 Score=44.02 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+||||+++.+...
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 678999999999999998753
No 224
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.45 E-value=7.6e-05 Score=43.55 Aligned_cols=21 Identities=14% Similarity=0.014 Sum_probs=19.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|.+|+||||+++.+...
T Consensus 12 i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 678999999999999999864
No 225
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=9.2e-05 Score=42.54 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=18.8
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.++++|.+|+|||+++..+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998875
No 226
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.44 E-value=7.9e-05 Score=44.58 Aligned_cols=21 Identities=10% Similarity=-0.027 Sum_probs=19.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+++..+...
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 678999999999999999864
No 227
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.44 E-value=7.5e-05 Score=42.47 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=18.2
Q ss_pred CCceeEcCCCCCHHHHHHHH
Q psy2599 1 MAPLYIKVLTEGTSCFSTRY 20 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~ 20 (78)
|-|++.|.+|+|||+++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999998
No 228
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.44 E-value=0.00022 Score=47.53 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=32.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCCCCCCC--CCCceeEEEEEEECC--EEEEEEEecCCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFTRQYYP--TSGPDFHLKLLTIQN--RGVKLILWDIGGKA 60 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~~~~~~--t~~~~~~~~~i~~~~--~~~~l~iwD~~G~~ 60 (78)
+.++|.+|+|||||++.+.+..+...... +.+.......+.... -...+.++|+.|-.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 67999999999999999987654321111 111111111112222 23467889987654
No 229
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.44 E-value=9.3e-05 Score=43.97 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|.+|+|||+++.++..
T Consensus 15 i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999875
No 230
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.39 E-value=0.00011 Score=43.45 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=18.6
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|+++|.+|+|||+++..+..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999998864
No 231
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.38 E-value=0.0001 Score=44.51 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|++.+..
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999999876
No 232
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.37 E-value=8.2e-05 Score=43.18 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|++.|.+|+|||+++..+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999988864
No 233
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.36 E-value=0.00011 Score=43.74 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++....-
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 568999999999999988753
No 234
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.36 E-value=9.2e-05 Score=43.06 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=15.5
Q ss_pred ceeEcCCCCCHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTR 19 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~ 19 (78)
++++|++|+|||+|++.
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999999994
No 235
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.34 E-value=0.00012 Score=42.38 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|++.|.+|+|||+++..+..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999888764
No 236
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.34 E-value=0.00012 Score=43.17 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=19.1
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|.++|.+|+|||+++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999999999875
No 237
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.34 E-value=0.00012 Score=44.14 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=19.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|++.|.+|+|||+++.++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7799999999999999998864
No 238
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.33 E-value=0.00014 Score=41.66 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999888753
No 239
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.32 E-value=0.00014 Score=41.95 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||++.+.+..
T Consensus 6 i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999875
No 240
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.29 E-value=0.00016 Score=42.57 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|.+|+|||+++..+...
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 688999999999999998764
No 241
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.28 E-value=0.00016 Score=42.66 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|++.|.+|+|||+++..+..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998864
No 242
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.28 E-value=0.00018 Score=43.17 Aligned_cols=22 Identities=5% Similarity=-0.003 Sum_probs=19.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|+++|.+|+|||++...+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999988864
No 243
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.27 E-value=3.9e-05 Score=53.13 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=46.7
Q ss_pred CceeEcCCCCCHHHHHHHHH--hCCCCCC-----------CCCC---CCceeEEEEEEECCEEEEEEEecCCCCCccCCc
Q psy2599 2 APLYIKVLTEGTSCFSTRYT--QDEFTRQ-----------YYPT---SGPDFHLKLLTIQNRGVKLILWDIGGKANESSA 65 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~--~~~~~~~-----------~~~t---~~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~ 65 (78)
+|.|+|-.+.|||||+.++. .+..... +.+- .|+......+.+.-+...++|.||+|+.+|..
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~- 82 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA- 82 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH-
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH-
Confidence 47899999999999999886 2222110 0000 01111112222222446678999999999987
Q ss_pred CchHhhhccCccC
Q psy2599 66 GLVKTYLSSANIS 78 (78)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (78)
-...-.+-+|+|
T Consensus 83 -Ev~raL~~~Dga 94 (638)
T 3j25_A 83 -EVYRSLSVLDGA 94 (638)
T ss_dssp -HHHHHHTTCSEE
T ss_pred -HHHHHHHHhCEE
Confidence 677777777775
No 244
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.26 E-value=0.00016 Score=44.05 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=18.2
Q ss_pred CceeEcCCCCCHHHHHHHHH
Q psy2599 2 APLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~ 21 (78)
.++++|++|+||||+++.+.
T Consensus 29 ~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999999999988
No 245
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.00017 Score=42.65 Aligned_cols=21 Identities=5% Similarity=0.232 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|+++|.+|+|||++...+..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378899999999999998874
No 246
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.25 E-value=0.00018 Score=42.01 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+||||+++.+..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999874
No 247
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.25 E-value=0.00022 Score=41.24 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=18.4
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|+++|.+|+|||++...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999988864
No 248
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.24 E-value=0.00019 Score=41.74 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=19.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|++.|.+|+|||+++..+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6689999999999999998875
No 249
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.24 E-value=0.00019 Score=41.63 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||+|++-+....
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999988654
No 250
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.23 E-value=0.00019 Score=43.26 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.8
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|+++|.+|+|||+++.++..
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998864
No 251
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.23 E-value=0.00019 Score=42.94 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=19.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|+++|.+|+|||++...+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999988864
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00015 Score=42.07 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=18.7
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|+++|.+|+|||++...+..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998864
No 253
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.23 E-value=0.0002 Score=42.40 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|.+|+|||++++.+..
T Consensus 32 i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998864
No 254
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.22 E-value=0.0002 Score=42.74 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=18.4
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|.++|.+|+||||+++.+..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999988864
No 255
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.21 E-value=0.00021 Score=43.09 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=17.2
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
++++|++|+|||+|+..+.
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999877
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.20 E-value=0.00018 Score=42.84 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=17.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.|+|++|+|||||++.+..
T Consensus 25 v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999887753
No 257
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.20 E-value=0.00016 Score=44.27 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=19.3
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|++.|.+|+|||+++.++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 258
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.18 E-value=0.0019 Score=45.98 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=22.1
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEF 25 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~ 25 (78)
+|+|+|+.++||||+++.+....+
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 589999999999999999998776
No 259
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.18 E-value=0.00023 Score=41.49 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=19.7
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|-|++.|..|+||||++.++..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999875
No 260
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.18 E-value=0.00023 Score=42.69 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=19.4
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|+++|.+|+|||+++..+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999988864
No 261
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.17 E-value=0.00015 Score=46.35 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|.+|||||||++.+....
T Consensus 176 ~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 5789999999999999998643
No 262
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.17 E-value=0.0002 Score=41.57 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=17.6
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|+..+..
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999988764
No 263
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.17 E-value=0.00025 Score=41.62 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=19.7
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
.|++.|..|+||||++..+...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 264
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.16 E-value=0.00025 Score=41.49 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=19.3
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
.|+++|.+|+|||++...+...
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999988754
No 265
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.15 E-value=0.00026 Score=41.88 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|.+|+|||++++.+..
T Consensus 28 i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999887764
No 266
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.15 E-value=0.00018 Score=41.22 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 46 vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999888753
No 267
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.15 E-value=0.00031 Score=40.76 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=19.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|+++|.+|+|||++...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999988865
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.15 E-value=0.00025 Score=42.21 Aligned_cols=21 Identities=5% Similarity=-0.001 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|+..+...
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999863
No 269
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.15 E-value=0.00033 Score=40.12 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=18.7
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|++.|.+|+|||++...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998875
No 270
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.13 E-value=0.00028 Score=41.05 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||+++..+..
T Consensus 8 I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998864
No 271
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.13 E-value=0.00029 Score=40.61 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=17.8
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|.+|+|||+++..+..
T Consensus 11 i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999988764
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.13 E-value=0.00029 Score=40.88 Aligned_cols=20 Identities=10% Similarity=0.297 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+++|.+|+|||++...+..
T Consensus 8 i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999864
No 273
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.12 E-value=0.00023 Score=41.86 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=18.8
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|++.|.+|+|||+++..+..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999875
No 274
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.10 E-value=0.00061 Score=47.66 Aligned_cols=74 Identities=11% Similarity=0.001 Sum_probs=43.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC--------CCCC--CC------CCCCCceeEEEEE--EEC-----CEEEEEEEecCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD--------EFTR--QY------YPTSGPDFHLKLL--TIQ-----NRGVKLILWDIGGK 59 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~--------~~~~--~~------~~t~~~~~~~~~i--~~~-----~~~~~l~iwD~~G~ 59 (78)
|.|||..+.|||||+.++... +... .+ ..-.|+......+ .+. .+.+.++|.||+|+
T Consensus 16 i~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGH 95 (709)
T 4fn5_A 16 IGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGH 95 (709)
T ss_dssp EEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCSC
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCC
Confidence 789999999999999888521 1100 00 1111212211122 222 23688999999999
Q ss_pred CccCCcCchHhhhccCccC
Q psy2599 60 ANESSAGLVKTYLSSANIS 78 (78)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~ 78 (78)
-+|.. =.....+-+|||
T Consensus 96 vDF~~--Ev~~aLr~~Dga 112 (709)
T 4fn5_A 96 VDFTI--EVERSLRVLDGA 112 (709)
T ss_dssp TTCHH--HHHHHHHHCSEE
T ss_pred cccHH--HHHHHHHHhCeE
Confidence 99987 566667777765
No 275
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.09 E-value=0.00032 Score=41.58 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|++|+||||+++.+..
T Consensus 9 i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999988765
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.09 E-value=0.00035 Score=41.59 Aligned_cols=21 Identities=5% Similarity=0.033 Sum_probs=18.3
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+.++|++|+|||+++.....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 467899999999999988774
No 277
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.09 E-value=0.00029 Score=43.19 Aligned_cols=21 Identities=10% Similarity=-0.159 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 568999999999999988753
No 278
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.07 E-value=0.00034 Score=41.61 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 55 ~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999988864
No 279
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.05 E-value=0.00036 Score=41.18 Aligned_cols=21 Identities=14% Similarity=0.060 Sum_probs=18.6
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|++.|.+|+|||+++..+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999998874
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.05 E-value=0.00044 Score=40.03 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||+++..+..
T Consensus 14 i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 78899999999999998874
No 281
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.05 E-value=0.00035 Score=45.08 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|.+|+|||||++++..
T Consensus 77 v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999985
No 282
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.04 E-value=0.00039 Score=42.09 Aligned_cols=22 Identities=5% Similarity=0.148 Sum_probs=19.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|+++|.+|+|||+++..+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999988864
No 283
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.03 E-value=0.00019 Score=43.30 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=13.7
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
+.++|++|+|||++++.+.
T Consensus 30 i~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEECSCC----CHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999998
No 284
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.03 E-value=0.0004 Score=40.45 Aligned_cols=21 Identities=10% Similarity=0.030 Sum_probs=18.4
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|++.|.+|+|||++...+..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999988864
No 285
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.03 E-value=0.00032 Score=40.68 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=17.8
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||++...+..
T Consensus 6 I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999988764
No 286
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.03 E-value=0.00041 Score=40.50 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|++.|.+|+|||+++..+..
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999988864
No 287
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.02 E-value=0.00041 Score=40.49 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999988875
No 288
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.02 E-value=0.00041 Score=40.90 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998874
No 289
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.02 E-value=0.00041 Score=41.18 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|+..+..
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999873
No 290
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.01 E-value=0.00041 Score=40.96 Aligned_cols=20 Identities=20% Similarity=0.116 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||+++..+..
T Consensus 12 I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998874
No 291
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.00 E-value=0.00052 Score=41.72 Aligned_cols=21 Identities=14% Similarity=-0.113 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999988753
No 292
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.00 E-value=0.00046 Score=40.68 Aligned_cols=20 Identities=5% Similarity=0.071 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|.+|+|||+|+.++..
T Consensus 9 i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 67799999999999999875
No 293
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.00 E-value=0.0004 Score=45.31 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=19.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
++++|.+|||||||++.+....
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEECCCCccHHHHHHHHhccc
Confidence 5789999999999999998654
No 294
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.00 E-value=0.00014 Score=43.04 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=19.1
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|-|++.|.+|+||||++..+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999998864
No 295
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.98 E-value=0.00064 Score=43.04 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||||++.+. ..
T Consensus 168 ~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEECCCCCCHHHHHHHHH-Hh
Confidence 5789999999999999998 54
No 296
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.98 E-value=0.00051 Score=43.39 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=19.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||||++.+....
T Consensus 172 v~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEECSTTSSHHHHHHHHSTTC
T ss_pred EEEECCCCCcHHHHHHHhcccc
Confidence 5689999999999999998654
No 297
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.98 E-value=0.00047 Score=42.03 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|++.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 589999999999999988753
No 298
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.98 E-value=0.00041 Score=42.55 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999998753
No 299
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.98 E-value=0.00042 Score=43.11 Aligned_cols=21 Identities=19% Similarity=-0.035 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999988753
No 300
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.97 E-value=0.00067 Score=41.76 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999998864
No 301
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.97 E-value=0.00045 Score=41.93 Aligned_cols=21 Identities=5% Similarity=-0.094 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999998753
No 302
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.96 E-value=0.00041 Score=43.65 Aligned_cols=20 Identities=10% Similarity=-0.003 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|.+|+||||++..+..
T Consensus 36 ivl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999874
No 303
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.95 E-value=0.00049 Score=42.84 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=17.6
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||++++.+..
T Consensus 28 v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 67899999999999988764
No 304
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.94 E-value=0.00047 Score=43.34 Aligned_cols=21 Identities=10% Similarity=-0.009 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 568999999999999988753
No 305
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.94 E-value=0.00028 Score=40.75 Aligned_cols=21 Identities=5% Similarity=-0.073 Sum_probs=14.6
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
-|++.|.+|+|||++...+..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EEEEECCC----CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999874
No 306
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.93 E-value=0.00055 Score=42.71 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 49 ~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998864
No 307
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.92 E-value=0.00067 Score=41.86 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999998754
No 308
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.92 E-value=0.00056 Score=42.22 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998864
No 309
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.92 E-value=0.00057 Score=40.40 Aligned_cols=20 Identities=5% Similarity=0.019 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|+..+..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999975
No 310
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.91 E-value=0.00052 Score=42.85 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCCcHHHHHHHHHcC
Confidence 568999999999999998753
No 311
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.91 E-value=0.00059 Score=40.91 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|+..+...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 578999999999999999863
No 312
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.91 E-value=0.00069 Score=41.61 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999998753
No 313
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.90 E-value=0.00071 Score=41.92 Aligned_cols=21 Identities=24% Similarity=0.066 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998754
No 314
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.90 E-value=0.00058 Score=42.76 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|.|+.|+|||+|+..+...
T Consensus 34 v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 34 TLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHH
Confidence 678999999999999998754
No 315
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.90 E-value=0.00054 Score=42.43 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 568999999999999998753
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.90 E-value=0.00061 Score=40.25 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=18.8
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+.++|.+|+|||+++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999976
No 317
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.89 E-value=0.00074 Score=42.15 Aligned_cols=21 Identities=19% Similarity=-0.031 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 568999999999999998864
No 318
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.89 E-value=0.00062 Score=41.99 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=18.7
Q ss_pred CC-ceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MA-PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~-~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+ ++++|.+|+|||+|...+..
T Consensus 1 M~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHh
Confidence 54 67899999999999998864
No 319
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.89 E-value=0.0012 Score=43.84 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=19.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||||++.+.+-.
T Consensus 72 valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5789999999999999998743
No 320
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.88 E-value=0.00079 Score=41.04 Aligned_cols=21 Identities=5% Similarity=-0.054 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998754
No 321
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.88 E-value=0.00056 Score=42.52 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 49 ~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999998753
No 322
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.88 E-value=0.00077 Score=41.35 Aligned_cols=21 Identities=10% Similarity=-0.077 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998754
No 323
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.87 E-value=0.00073 Score=42.08 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||++..++..
T Consensus 5 I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999886
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.87 E-value=0.0005 Score=40.47 Aligned_cols=20 Identities=5% Similarity=0.028 Sum_probs=17.8
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||+++.++..
T Consensus 18 I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999988864
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.87 E-value=0.00078 Score=42.13 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 48 ~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999998764
No 326
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.86 E-value=0.00062 Score=42.67 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|.|+.|+|||+|+..+...
T Consensus 33 v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 33 TLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999753
No 327
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.86 E-value=0.00069 Score=39.83 Aligned_cols=20 Identities=5% Similarity=0.012 Sum_probs=17.8
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+|+..+..
T Consensus 57 ~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999988764
No 328
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.86 E-value=0.00064 Score=43.26 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=17.1
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
+.++|++|+||||++..+.
T Consensus 105 i~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5689999999999998886
No 329
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.86 E-value=0.00068 Score=41.36 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||++++.+..
T Consensus 48 vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 68999999999999998875
No 330
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.85 E-value=0.00083 Score=42.23 Aligned_cols=21 Identities=5% Similarity=-0.047 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 568999999999999998754
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.85 E-value=0.00074 Score=39.33 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+++|.+|+|||+++..+..
T Consensus 16 i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78899999999999988753
No 332
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.84 E-value=0.00087 Score=43.76 Aligned_cols=21 Identities=10% Similarity=-0.059 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++....-
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCchHHHHHHHHhcC
Confidence 468999999999999998864
No 333
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.84 E-value=0.00071 Score=41.90 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|++.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 589999999999999988753
No 334
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.84 E-value=0.00087 Score=41.64 Aligned_cols=21 Identities=10% Similarity=-0.213 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999998754
No 335
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.84 E-value=0.00073 Score=39.07 Aligned_cols=20 Identities=5% Similarity=0.004 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||+++..+..
T Consensus 9 I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999988864
No 336
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.84 E-value=0.00048 Score=41.57 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999988764
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.83 E-value=0.00056 Score=42.20 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||+++..+..
T Consensus 7 Ivl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78899999999999998874
No 338
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.83 E-value=0.00071 Score=42.25 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|++-...
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68899999999999998875
No 339
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.83 E-value=0.00065 Score=42.32 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 568999999999999998753
No 340
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.83 E-value=0.00072 Score=43.15 Aligned_cols=20 Identities=10% Similarity=-0.090 Sum_probs=17.6
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.|+|++|+|||||++.+..
T Consensus 93 vgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHh
Confidence 56899999999999988764
No 341
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.82 E-value=0.00072 Score=42.80 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+|+..+..
T Consensus 48 vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 48 IFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999998875
No 342
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.81 E-value=0.00071 Score=42.20 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|+..+...
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 578999999999999988753
No 343
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.81 E-value=0.00071 Score=43.22 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=17.1
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
+.|+|++|+|||+|++.+.
T Consensus 129 vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 6789999999999988776
No 344
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.80 E-value=0.00052 Score=44.68 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=18.3
Q ss_pred CceeEcCCCCCHHHHHHHHH
Q psy2599 2 APLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~ 21 (78)
+++++|.+++|||+|++++.
T Consensus 35 killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 35 KILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999874
No 345
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.80 E-value=0.00094 Score=41.69 Aligned_cols=21 Identities=5% Similarity=-0.015 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 33 ~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998864
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.80 E-value=0.00081 Score=39.77 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|.+|+|||+++..+...
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999998753
No 347
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.79 E-value=0.00079 Score=42.76 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|++|+||||++..+..
T Consensus 103 i~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999988763
No 348
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.79 E-value=0.00078 Score=42.96 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|++.+...
T Consensus 54 ~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 54 VLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 678999999999999998753
No 349
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.79 E-value=0.00084 Score=40.73 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 42 vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999998875
No 350
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.79 E-value=0.00096 Score=37.64 Aligned_cols=23 Identities=13% Similarity=-0.139 Sum_probs=19.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
.+++.|++|+|||.+++.+....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999887643
No 351
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.78 E-value=0.001 Score=41.23 Aligned_cols=21 Identities=10% Similarity=-0.179 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999998864
No 352
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.78 E-value=0.0008 Score=41.46 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 54 ~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 788999999999999998753
No 353
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.78 E-value=0.00084 Score=40.27 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|+.++..
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999888863
No 354
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.77 E-value=0.00084 Score=43.19 Aligned_cols=20 Identities=5% Similarity=0.199 Sum_probs=17.5
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|++|+||||++..+..
T Consensus 132 i~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999888764
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.77 E-value=0.0007 Score=39.18 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=18.4
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.++++|.+|+|||+++..+..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999988875
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.76 E-value=0.0011 Score=43.14 Aligned_cols=21 Identities=5% Similarity=-0.159 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999998864
No 357
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.76 E-value=0.00094 Score=41.33 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 53 vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998874
No 358
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.75 E-value=0.00063 Score=43.88 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
++.|+|++|+|||+|++.+..
T Consensus 172 k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999998875
No 359
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.75 E-value=0.0009 Score=41.14 Aligned_cols=19 Identities=5% Similarity=-0.104 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
|.++|++|+|||++++.+.
T Consensus 30 I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7789999999999999887
No 360
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.75 E-value=0.00066 Score=45.23 Aligned_cols=58 Identities=9% Similarity=-0.031 Sum_probs=32.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCCCCCCCCCCCCceeEEEEEEECCEEEEEEEecCCCCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKA 60 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwD~~G~~ 60 (78)
.|+++|.+|+|||++..++...... ...++...+.........+......+||..|++
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~ 98 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 98 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHH
Confidence 3788999999999999999864321 122333211100000111222445789998873
No 361
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.74 E-value=0.00094 Score=40.72 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|++|+||||+++.+..
T Consensus 28 igI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999998875
No 362
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.74 E-value=0.0012 Score=43.03 Aligned_cols=21 Identities=10% Similarity=-0.083 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCchHHHHHHHHhcC
Confidence 468999999999999998864
No 363
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.74 E-value=0.0018 Score=43.45 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|-|+|...+|||+|++++..
T Consensus 70 VsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 70 VSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhh
Confidence 56799999999999999974
No 364
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.73 E-value=0.00054 Score=39.18 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|+.-+..
T Consensus 39 ~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999998875
No 365
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.73 E-value=0.0012 Score=42.99 Aligned_cols=21 Identities=5% Similarity=-0.205 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHCC
Confidence 468999999999999998864
No 366
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.73 E-value=0.00039 Score=40.87 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|.+|+|||+|+..+..
T Consensus 5 v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999888764
No 367
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.72 E-value=0.00095 Score=42.91 Aligned_cols=19 Identities=16% Similarity=-0.134 Sum_probs=17.6
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
+.++|.+|+|||||++.+.
T Consensus 58 v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999987
No 368
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.71 E-value=0.001 Score=39.39 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|.+|+|||+++..+..
T Consensus 25 i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999988764
No 369
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.71 E-value=0.00094 Score=41.44 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 57 vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 57 LLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp EEEESSSSSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 78899999999999999875
No 370
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.71 E-value=0.00096 Score=41.36 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|+..+..
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999874
No 371
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.71 E-value=0.0013 Score=43.02 Aligned_cols=21 Identities=5% Similarity=-0.148 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCcHHHHHHHHHHcC
Confidence 468999999999999998864
No 372
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.71 E-value=0.0013 Score=43.21 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++....-
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHcC
Confidence 468999999999999998864
No 373
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.70 E-value=0.001 Score=41.40 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=16.7
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
+++.|++|+|||+++..+.
T Consensus 70 vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999997554
No 374
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.70 E-value=0.001 Score=41.88 Aligned_cols=20 Identities=5% Similarity=0.004 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||++++.+..
T Consensus 40 lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67899999999999998875
No 375
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.70 E-value=0.0014 Score=42.98 Aligned_cols=21 Identities=5% Similarity=-0.162 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCChHHHHHHHHHcC
Confidence 468999999999999998864
No 376
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.70 E-value=0.00099 Score=42.92 Aligned_cols=21 Identities=14% Similarity=-0.149 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|+++|.+|||||||+.++..
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999863
No 377
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.70 E-value=0.0011 Score=38.27 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=16.4
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
.+++|++|+|||+|+.-+.
T Consensus 29 ~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4689999999999988764
No 378
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.68 E-value=0.00093 Score=42.27 Aligned_cols=21 Identities=5% Similarity=-0.054 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++-...-
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 568999999999999998753
No 379
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.66 E-value=0.00091 Score=39.11 Aligned_cols=21 Identities=10% Similarity=-0.107 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|.+.|..|+|||++...+...
T Consensus 11 I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 788999999999999998764
No 380
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.65 E-value=0.0012 Score=42.09 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988754
No 381
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.65 E-value=0.0005 Score=42.22 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|.+|+|||+++..+..
T Consensus 35 i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998864
No 382
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.65 E-value=0.0013 Score=38.73 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=17.5
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|.+|+|||+++.++..
T Consensus 7 i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56799999999999988874
No 383
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.65 E-value=0.00079 Score=40.74 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|..|+||||+++.+...
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 678999999999999988753
No 384
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.63 E-value=0.00087 Score=43.54 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=19.0
Q ss_pred CCceeEcCCCCCHHHHHHHHH
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~ 21 (78)
++++++|.+++|||++++++.
T Consensus 10 ~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 10 RKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEECCCCCcHHHHHHHHH
Confidence 368999999999999999986
No 385
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.63 E-value=0.0012 Score=40.60 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 67 vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 788999999999999988753
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.63 E-value=0.0013 Score=39.17 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+++|.+|+|||+++..+..
T Consensus 28 i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999887753
No 387
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.62 E-value=0.0011 Score=45.64 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=19.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhCCCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDEFT 26 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~~~ 26 (78)
++|+|++|+|||||++.+.+-.+|
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 688999999999999999876444
No 388
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.62 E-value=0.00094 Score=40.87 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78899999999999998875
No 389
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.61 E-value=0.0012 Score=42.96 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|++|+||||++..+..
T Consensus 160 i~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHh
Confidence 57899999999999888764
No 390
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.61 E-value=0.0013 Score=40.03 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=17.5
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+++|++|+||++.+.++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56799999999999988874
No 391
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.60 E-value=0.0011 Score=41.96 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 47 vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 47 ALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp EEECBCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998875
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.60 E-value=0.0011 Score=39.56 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||+++..+..
T Consensus 7 I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999875
No 393
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.60 E-value=0.0012 Score=43.41 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|++|+|||+|++....
T Consensus 50 ~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCChHHHHHHHHhC
Confidence 57899999999999988875
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.59 E-value=0.0015 Score=37.33 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|..|+|||++...+..
T Consensus 10 i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998875
No 395
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.58 E-value=0.0013 Score=41.54 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=17.8
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.|+|.+|+|||+|+..+..
T Consensus 83 igI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999998875
No 396
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.58 E-value=0.0013 Score=41.86 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 73 vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 73 VLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999998753
No 397
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.58 E-value=0.0011 Score=43.04 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTS
T ss_pred EEEECCCCccHHHHHHHHHcC
Confidence 568999999999999998864
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.58 E-value=0.0015 Score=39.82 Aligned_cols=20 Identities=5% Similarity=-0.047 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|.+|+|||+++.++..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78899999999999998875
No 399
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.57 E-value=0.0014 Score=41.17 Aligned_cols=20 Identities=10% Similarity=-0.223 Sum_probs=17.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++.....
T Consensus 39 lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46679999999999998874
No 400
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.57 E-value=0.0014 Score=42.64 Aligned_cols=20 Identities=15% Similarity=-0.016 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+||||+++-+..
T Consensus 126 i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68899999999999987764
No 401
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.55 E-value=0.0014 Score=44.57 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=17.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|.+|+|||+++..+..
T Consensus 296 I~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHH
Confidence 57899999999999888753
No 402
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.55 E-value=0.0015 Score=41.26 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=16.6
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
|.|+|.+|+|||+|+..+.
T Consensus 34 i~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999987765
No 403
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0014 Score=43.90 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=18.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
.+.|+|++|+|||||++-+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3678999999999999988753
No 404
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.53 E-value=0.0014 Score=42.61 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=17.8
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+++..+..
T Consensus 139 i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999988764
No 405
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.53 E-value=0.0016 Score=41.06 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=19.2
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
.+++.|++|+|||+++..+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3788999999999999998753
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.53 E-value=0.0017 Score=40.32 Aligned_cols=21 Identities=5% Similarity=0.192 Sum_probs=18.6
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|+++|.+|+|||++.+.+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 407
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.52 E-value=0.0016 Score=40.08 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=18.2
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+.+.|++|+|||+++..+..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999988863
No 408
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.52 E-value=0.0016 Score=40.51 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 50 ~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 68899999999999988875
No 409
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.52 E-value=0.0014 Score=42.38 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||||++.+..-
T Consensus 178 i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 178 IVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp EEEEESSSSCHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999998853
No 410
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.51 E-value=0.0016 Score=40.96 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||++++.+...
T Consensus 52 vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHH
Confidence 788999999999999988753
No 411
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.51 E-value=0.0016 Score=41.50 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 48 vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 48 NLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999998875
No 412
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.50 E-value=0.0017 Score=41.78 Aligned_cols=20 Identities=15% Similarity=-0.064 Sum_probs=17.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|++|+|||+++..+..
T Consensus 95 igI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56799999999999988753
No 413
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.50 E-value=0.0022 Score=41.94 Aligned_cols=21 Identities=14% Similarity=-0.137 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++....-
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHhcC
Confidence 468999999999999888754
No 414
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.48 E-value=0.0014 Score=43.77 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|||||+++..+..
T Consensus 204 ~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 78999999999999988764
No 415
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.47 E-value=0.0016 Score=40.70 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+++.|++|+|||+++..+..
T Consensus 40 ~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998864
No 416
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.46 E-value=0.0016 Score=39.56 Aligned_cols=21 Identities=19% Similarity=-0.028 Sum_probs=19.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+++..+...
T Consensus 37 ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 417
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.46 E-value=0.002 Score=39.43 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=19.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhCC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
.+++.|++|+|||++++.+....
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTS
T ss_pred CEEEECCCCCcHHHHHHHHHHhc
Confidence 47899999999999999987643
No 418
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.45 E-value=0.0023 Score=37.52 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.+.|.+|+|||++...+..
T Consensus 5 i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999988865
No 419
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.45 E-value=0.0019 Score=41.51 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=18.7
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+++.|++|+|||+++..+..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999998875
No 420
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.44 E-value=0.0019 Score=39.26 Aligned_cols=19 Identities=5% Similarity=0.343 Sum_probs=17.5
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
++++|.+||||||++..+.
T Consensus 17 ~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHH
Confidence 5679999999999999997
No 421
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.43 E-value=0.00099 Score=42.52 Aligned_cols=20 Identities=10% Similarity=-0.036 Sum_probs=17.8
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|++|+|||||++-+..
T Consensus 83 vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTT
T ss_pred EEEECCCCchHHHHHHHHHc
Confidence 67899999999999988764
No 422
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.42 E-value=0.0021 Score=38.54 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=17.1
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
+++.|++|+|||+|+.+++
T Consensus 33 ~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999875
No 423
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.41 E-value=0.0015 Score=41.31 Aligned_cols=20 Identities=10% Similarity=-0.059 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998876
No 424
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.41 E-value=0.0011 Score=43.02 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999998864
No 425
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.41 E-value=0.0018 Score=41.51 Aligned_cols=21 Identities=5% Similarity=-0.013 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|++-+..-
T Consensus 174 v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp EEEEESTTSCHHHHHHHGGGG
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999998854
No 426
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.41 E-value=0.002 Score=40.57 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999988764
No 427
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.40 E-value=0.002 Score=41.01 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 48 iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEESSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 788999999999999998864
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.39 E-value=0.0019 Score=42.50 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+++|.+|+|||+++.++..
T Consensus 261 Iil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999875
No 429
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.39 E-value=0.002 Score=40.75 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||++++.+...
T Consensus 54 vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999988753
No 430
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.39 E-value=0.0019 Score=41.81 Aligned_cols=22 Identities=9% Similarity=-0.154 Sum_probs=19.3
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||+|++...+..
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5789999999999999988753
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.35 E-value=0.0027 Score=36.23 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=15.4
Q ss_pred eeEcCCCCCHHHHHHHHH
Q psy2599 4 LYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 4 v~vG~~~vGKTsl~~~~~ 21 (78)
+++|+.|+|||+|+.-+.
T Consensus 27 ~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 689999999999977653
No 432
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.34 E-value=0.0022 Score=40.71 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999988753
No 433
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.34 E-value=0.0017 Score=41.27 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|.+|+||||+++.+...
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEecCCCCHHHHHHHHHhh
Confidence 578999999999999999865
No 434
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.32 E-value=0.0021 Score=42.81 Aligned_cols=21 Identities=10% Similarity=-0.148 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|++.....
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999988865
No 435
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.31 E-value=0.0023 Score=41.27 Aligned_cols=21 Identities=5% Similarity=-0.001 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||+|+..++..
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999854
No 436
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.30 E-value=0.0014 Score=36.97 Aligned_cols=22 Identities=0% Similarity=-0.022 Sum_probs=18.8
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
.+++.|++|+|||+++..+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4789999999999999887653
No 437
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.30 E-value=0.0024 Score=40.40 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=16.6
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
++++|.+|+|||+++..+.
T Consensus 108 i~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999988775
No 438
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.30 E-value=0.0027 Score=41.26 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
|+|+|+.|+|||+|...+...
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999853
No 439
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.29 E-value=0.0028 Score=40.95 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|+|+.|||||+|...+...
T Consensus 6 i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHT
T ss_pred EEEECCCcCCHHHHHHHHHHh
Confidence 678999999999999999854
No 440
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.29 E-value=0.0025 Score=42.98 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|.|.+|+|||+|+..+...
T Consensus 150 v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 150 VTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEcCCCCCHHHHHHHHHhc
Confidence 678999999999999998743
No 441
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.27 E-value=0.0025 Score=42.07 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
++|+|++|+|||+|+..++
T Consensus 181 ~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHH
Confidence 5789999999999999886
No 442
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.26 E-value=0.0018 Score=40.89 Aligned_cols=21 Identities=10% Similarity=-0.105 Sum_probs=18.7
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+++.|++|+|||+++..+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999998875
No 443
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.26 E-value=0.0029 Score=40.55 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=19.0
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
.+++.|++|+|||+++..+...
T Consensus 53 ~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999888753
No 444
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.26 E-value=0.0021 Score=40.23 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|.|.+|+|||+++..+..
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998873
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.25 E-value=0.0028 Score=40.85 Aligned_cols=20 Identities=5% Similarity=0.114 Sum_probs=18.2
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++|+|+.|+|||+|...+..
T Consensus 8 i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998875
No 446
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.24 E-value=0.0031 Score=37.50 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=19.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|+|.+++|||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 447
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.24 E-value=0.0022 Score=39.20 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|.|.|.+|+|||++...+..
T Consensus 25 I~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999998875
No 448
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.24 E-value=0.0027 Score=42.12 Aligned_cols=20 Identities=20% Similarity=-0.104 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++|+|+.|+||||+++-+..
T Consensus 170 i~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999998875
No 449
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.24 E-value=0.0028 Score=40.77 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=18.8
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 120 vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 120 ILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998753
No 450
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.23 E-value=0.0022 Score=41.62 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=18.1
Q ss_pred CceeEcCCCCCHHHHHHHHH
Q psy2599 2 APLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~ 21 (78)
++|++|.+++|||++++++.
T Consensus 7 klLLLG~geSGKSTi~KQmk 26 (340)
T 4fid_A 7 TVMLLGSGESGKSTIAKQLK 26 (340)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 68999999999999998874
No 451
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.23 E-value=0.0029 Score=40.29 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=16.8
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
++++|.+|+|||+++..+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHH
Confidence 5789999999999988776
No 452
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.22 E-value=0.0037 Score=37.11 Aligned_cols=21 Identities=14% Similarity=0.060 Sum_probs=18.6
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|++.|..|+|||++...+..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999988865
No 453
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.22 E-value=0.0028 Score=40.78 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 87 iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999988753
No 454
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.22 E-value=0.0026 Score=42.91 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=16.6
Q ss_pred ceeEcCCCCCHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRY 20 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~ 20 (78)
++++|++|+|||+|+..|
T Consensus 42 ~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 578999999999999996
No 455
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.20 E-value=0.003 Score=40.97 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|+|.|++|+|||+|..++..
T Consensus 10 I~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCcCcHHHHHHHHHH
Confidence 67899999999999998875
No 456
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.20 E-value=0.0043 Score=42.25 Aligned_cols=22 Identities=9% Similarity=-0.154 Sum_probs=19.2
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||||++-...-.
T Consensus 50 ~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 50 VGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999988643
No 457
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.19 E-value=0.003 Score=40.47 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
+.++|.+|+||||++..+.
T Consensus 59 i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999986
No 458
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.19 E-value=0.0023 Score=41.07 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=17.1
Q ss_pred cee--EcCCCCCHHHHHHHHHh
Q psy2599 3 PLY--IKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~--vG~~~vGKTsl~~~~~~ 22 (78)
++| .|++|+|||+++..+..
T Consensus 53 ~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp EEEECTTCCSSSHHHHHHHHHH
T ss_pred EEEeCcCcCCCCHHHHHHHHHH
Confidence 455 79999999999998875
No 459
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.19 E-value=0.0033 Score=37.57 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 19 vli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 789999999999999988753
No 460
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.18 E-value=0.0033 Score=38.02 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=18.4
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.|.++|.+|+|||++...+..
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999988874
No 461
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.17 E-value=0.0034 Score=38.67 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=19.9
Q ss_pred CCceeEcCCCCCHHHHHHHHHh
Q psy2599 1 MAPLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 1 ~~~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++-++|.+|+|||++..++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 7888999999999999998865
No 462
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.15 E-value=0.0033 Score=39.82 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=17.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||.|+..+..
T Consensus 155 lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 155 LYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999877764
No 463
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.14 E-value=0.0033 Score=40.76 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=18.9
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 151 vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 151 LLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998753
No 464
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.13 E-value=0.0035 Score=39.73 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999998875
No 465
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.13 E-value=0.0035 Score=40.35 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++|+|+.|+|||+|...+...
T Consensus 13 i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHh
Confidence 578999999999999999753
No 466
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.11 E-value=0.0037 Score=38.81 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 688999999999999888753
No 467
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.11 E-value=0.0035 Score=41.07 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|+..+..
T Consensus 172 i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 172 WLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999988764
No 468
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.08 E-value=0.0034 Score=42.67 Aligned_cols=20 Identities=5% Similarity=0.001 Sum_probs=17.7
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+|++.+..
T Consensus 111 vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999988764
No 469
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.07 E-value=0.0038 Score=41.39 Aligned_cols=21 Identities=5% Similarity=-0.035 Sum_probs=18.2
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+++.|++|+|||+|++.+..
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 368899999999999988765
No 470
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.07 E-value=0.0017 Score=40.93 Aligned_cols=20 Identities=15% Similarity=-0.007 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 48 vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 78999999999999999875
No 471
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.07 E-value=0.0035 Score=40.41 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=18.2
Q ss_pred CceeEcCCCCCHHHHHHHHH
Q psy2599 2 APLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~ 21 (78)
++|++|.+.+|||++++++.
T Consensus 9 klLlLG~geSGKSTi~KQmk 28 (327)
T 3ohm_A 9 KLLLLGTGESGKSTFIKQMR 28 (327)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEcCCCccHHHHHHHHH
Confidence 58999999999999999875
No 472
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.06 E-value=0.0039 Score=44.32 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.++++|++|+|||+++..+..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999988875
No 473
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.06 E-value=0.0038 Score=41.62 Aligned_cols=21 Identities=5% Similarity=-0.005 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||++++.+...
T Consensus 53 vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 53 MILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 688999999999999998853
No 474
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.04 E-value=0.0039 Score=42.16 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=17.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.++|++|+|||||+.-+..
T Consensus 32 ~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 32 TTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 46899999999999988764
No 475
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.04 E-value=0.0049 Score=41.70 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=18.3
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+.|+|.+|+|||+|+..+.+
T Consensus 155 v~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 155 LFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999986
No 476
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.03 E-value=0.0031 Score=40.93 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=18.5
Q ss_pred CceeEcCCCCCHHHHHHHHH
Q psy2599 2 APLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~ 21 (78)
++|++|.+.+|||++++++.
T Consensus 34 klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 34 KLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCchhHHHHHH
Confidence 58999999999999999886
No 477
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.01 E-value=0.0043 Score=38.46 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 688999999999999888643
No 478
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.99 E-value=0.0043 Score=38.39 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=17.8
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHH
Confidence 68899999999999988864
No 479
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.99 E-value=0.0041 Score=42.18 Aligned_cols=21 Identities=5% Similarity=-0.028 Sum_probs=18.7
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|+.|+|||++++-+..-
T Consensus 263 i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999988753
No 480
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0063 Score=42.13 Aligned_cols=22 Identities=9% Similarity=-0.118 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||||++-...-.
T Consensus 106 ~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHhcCC
Confidence 4689999999999999988643
No 481
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.96 E-value=0.0037 Score=37.87 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.6
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
-|++-|..|+|||+++..+..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378899999999999998875
No 482
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.96 E-value=0.0019 Score=39.73 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=18.1
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
|++.|..|+|||+++..+..
T Consensus 27 I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGG
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999988874
No 483
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.96 E-value=0.0044 Score=41.83 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
++++|++|+|||+|+..+...
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 578999999999999999853
No 484
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.95 E-value=0.0056 Score=41.83 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999998753
No 485
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.95 E-value=0.0044 Score=40.34 Aligned_cols=20 Identities=5% Similarity=-0.012 Sum_probs=17.5
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++|.|++|+|||+|+..+..
T Consensus 64 ~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999988864
No 486
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.94 E-value=0.0048 Score=39.12 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=17.9
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|.+|+|||+|+.++..
T Consensus 71 ~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999874
No 487
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.93 E-value=0.0047 Score=40.96 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=19.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+|+..+...
T Consensus 170 vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999998864
No 488
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.92 E-value=0.004 Score=37.06 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=18.9
Q ss_pred CceeEcCCCCCHHHHHHHHHhC
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~~ 23 (78)
.|.+.|..|+|||++...+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999988753
No 489
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.91 E-value=0.0046 Score=43.20 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|+|||+++..+..
T Consensus 210 vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 210 PLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999888764
No 490
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.0047 Score=41.60 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+++..+...
T Consensus 80 lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 80 AMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998753
No 491
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.91 E-value=0.0057 Score=38.62 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=18.8
Q ss_pred CceeEcCCCCCHHHHHHHHHh
Q psy2599 2 APLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 2 ~~v~vG~~~vGKTsl~~~~~~ 22 (78)
.+++.|++|+|||.++..+..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHH
Confidence 478999999999999988875
No 492
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.91 E-value=0.0049 Score=39.93 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+++.|++|+|||+|+.++...
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 578999999999999999853
No 493
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.88 E-value=0.0041 Score=43.59 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=18.0
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
++++|++|||||+++..+..
T Consensus 204 vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 78999999999999888764
No 494
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.88 E-value=0.0055 Score=36.09 Aligned_cols=19 Identities=5% Similarity=0.074 Sum_probs=16.2
Q ss_pred ceeEcCCCCCHHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRYT 21 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~ 21 (78)
+++.|+.|+|||+++.+..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999986655
No 495
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.88 E-value=0.006 Score=41.70 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=18.5
Q ss_pred ceeEcCCCCCHHHHHHHHHhC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQD 23 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~ 23 (78)
+.++|++|+|||||++-...-
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHhhc
Confidence 578999999999999998753
No 496
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.87 E-value=0.0052 Score=39.48 Aligned_cols=20 Identities=15% Similarity=-0.067 Sum_probs=18.6
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++..+..
T Consensus 147 vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 147 VLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 497
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0052 Score=40.95 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=18.4
Q ss_pred ceeEcCCCCCHHHHHHHHHh
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQ 22 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~ 22 (78)
+++.|++|+|||+++.-...
T Consensus 209 iLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 498
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.85 E-value=0.0069 Score=41.90 Aligned_cols=22 Identities=5% Similarity=-0.165 Sum_probs=19.1
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||||++-.....
T Consensus 120 ~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 120 VGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 5689999999999999988643
No 499
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.85 E-value=0.007 Score=41.28 Aligned_cols=22 Identities=5% Similarity=-0.161 Sum_probs=19.0
Q ss_pred ceeEcCCCCCHHHHHHHHHhCC
Q psy2599 3 PLYIKVLTEGTSCFSTRYTQDE 24 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~~~~~ 24 (78)
+.++|++|+|||||++-...-.
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999988654
No 500
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.83 E-value=0.0064 Score=36.24 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=15.2
Q ss_pred ceeEcCCCCCHHHHHHHH
Q psy2599 3 PLYIKVLTEGTSCFSTRY 20 (78)
Q Consensus 3 ~v~vG~~~vGKTsl~~~~ 20 (78)
.+|+|+.|+|||+|+.-+
T Consensus 26 ~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 368999999999997654
Done!