RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2599
(78 letters)
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 52.7 bits (127), Expect = 2e-10
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + F R+ EF ++Y T G + H + +K +WD G
Sbjct: 27 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 50.6 bits (122), Expect = 1e-09
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG-VKLILWDIGG 58
G + +T + Q+ F +QY T G DF L+ +T+ V L +WDIGG
Sbjct: 18 GKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 50.3 bits (121), Expect = 2e-09
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 1 MAPLY---IKVL-----TEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLI 52
MA Y K+L G +C R+++D F + T G DF ++ + + + +KL
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 53 LWDIGG 58
+WD G
Sbjct: 61 IWDTAG 66
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 50.4 bits (121), Expect = 2e-09
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G SC R++ D +T Y T G DF +K + + + VKL +WD G
Sbjct: 20 GKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 49.9 bits (120), Expect = 2e-09
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G SC R+ D +T Y T G DF ++ + + + +KL +WD G
Sbjct: 28 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 49.8 bits (120), Expect = 2e-09
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S RY ++F Q + T G +F K L + V + +WD G
Sbjct: 19 GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 65
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 50.0 bits (120), Expect = 2e-09
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + +Y +F+ QY T G DF K + + +R V + +WD G
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 49.5 bits (119), Expect = 2e-09
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G SC R+ +D+F + T G DF +K + I + VKL +WD G
Sbjct: 15 GKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 50.0 bits (120), Expect = 2e-09
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S F R ++EF T G DF +K L + L LWD G
Sbjct: 40 GKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAG 86
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 50.0 bits (120), Expect = 2e-09
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G SC R+ D +T Y T G DF ++ + + + +KL +WD G
Sbjct: 45 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 91
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 49.9 bits (120), Expect = 3e-09
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + F RY D FT + T G DF +K + ++ +KL +WD G
Sbjct: 34 GKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 49.5 bits (119), Expect = 3e-09
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ + F+ Y T G DF ++ + I VKL +WD G
Sbjct: 21 GKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 49.0 bits (118), Expect = 3e-09
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWD 55
G S RY + FT+ Y T G DF + + + + V+L+LWD
Sbjct: 17 GKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWD 60
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 49.6 bits (119), Expect = 3e-09
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + TR+ D F Y T G DF K + +++R V+L LWD G
Sbjct: 28 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 49.2 bits (118), Expect = 5e-09
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + F RY D FT + T G DF +K + + VKL +WD G
Sbjct: 35 GKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 48.8 bits (117), Expect = 5e-09
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+T D F + T G DF +K +++ KL +WD G
Sbjct: 27 GKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 73
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 48.7 bits (117), Expect = 6e-09
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + TR+ D F Y T G DF K + +++R V+L LWD G
Sbjct: 26 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 48.8 bits (117), Expect = 6e-09
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + F RY D FT + T G DF +K + ++ +KL +WD G
Sbjct: 20 GKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 48.8 bits (117), Expect = 6e-09
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C R+TQ F T G DF +K + I VKL +WD G
Sbjct: 38 GKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 48.8 bits (117), Expect = 7e-09
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C R+ F+ + T G DF +K L IQ + VKL +WD G
Sbjct: 41 GKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAG 87
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 48.4 bits (116), Expect = 8e-09
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + R+T D F T G DF +K + ++ + ++L +WD G
Sbjct: 38 GKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 48.4 bits (116), Expect = 9e-09
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S +R+T++EF + T G +F + + + + +K +WD G
Sbjct: 17 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 48.4 bits (116), Expect = 1e-08
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G SC ++ +++F + T G +F +++ + + VKL +WD G
Sbjct: 37 GKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 48.0 bits (115), Expect = 1e-08
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + +R+T++EF+ T G +F + + + VK +WD G
Sbjct: 37 GKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 83
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 48.0 bits (115), Expect = 1e-08
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G SC ++T F + T G +F +++ I + +KL +WD G
Sbjct: 33 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 48.0 bits (115), Expect = 1e-08
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C + R+ F + T G DF + + I +K+ LWD G
Sbjct: 32 GKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 78
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 48.1 bits (115), Expect = 1e-08
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G SC R+ +D+F + T G DF +K + I + VKL LWD G
Sbjct: 32 GKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 47.9 bits (115), Expect = 1e-08
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + RY +++F ++ T G F K L I + V L +WD G
Sbjct: 18 GKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G SC ++ + +F T G +F K++ + + VKL +WD G
Sbjct: 22 GKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 68
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 47.6 bits (114), Expect = 1e-08
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G SC ++T+ +F T G +F +++ + + +KL +WD G
Sbjct: 27 GKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 48.2 bits (115), Expect = 1e-08
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S +R+T++EF T G +F + L I+ + +K +WD G
Sbjct: 25 GKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAG 71
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 47.6 bits (114), Expect = 2e-08
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S +R+T++EF + T G +F + + + + +K +WD G
Sbjct: 41 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 87
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 47.2 bits (113), Expect = 2e-08
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQ-NRGVKLILWDIGG 58
G + RY D++++QY T G DF K +T+ ++ + +WD G
Sbjct: 20 GKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 47.1 bits (112), Expect = 2e-08
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ ++F PT G F + +TI VK +WD G
Sbjct: 15 GKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 47.1 bits (113), Expect = 2e-08
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + + + + + D + + + + V LI++DI
Sbjct: 14 GKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 47.2 bits (113), Expect = 2e-08
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ QD F PT G F K + N K ++WD G
Sbjct: 35 GKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG 81
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 46.4 bits (111), Expect = 4e-08
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ + +F T G F + + + + VK +WD G
Sbjct: 18 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 46.4 bits (111), Expect = 4e-08
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + + + + P + D + + + + V L+++DI
Sbjct: 35 GKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWE 81
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 46.3 bits (111), Expect = 4e-08
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ +D F PT G F K + QN K ++WD G
Sbjct: 18 GKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 45.8 bits (109), Expect = 8e-08
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGP-DFHLKLLTIQNRGVKLILWD 55
G + + R F + Y T G + + L Q +K +WD
Sbjct: 23 GKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 45.2 bits (108), Expect = 1e-07
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ +D+F T G F + L + + VK +WD G
Sbjct: 24 GKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 70
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 45.3 bits (108), Expect = 1e-07
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 12 GTSCFSTRYTQDEFT-RQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C R+ F + T G DF K+L + VKL +WD G
Sbjct: 22 GKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 45.4 bits (108), Expect = 1e-07
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG----------VKLILWDIGG 58
G + F RYT ++F ++ T G DF K + +G V L LWD G
Sbjct: 37 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG 93
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 43.2 bits (103), Expect = 5e-07
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWD 55
G S + ++ F +Y PT DF+ K + + + L + D
Sbjct: 15 GKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILD 57
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 43.4 bits (103), Expect = 6e-07
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRG----------VKLILWDIGG 58
G + +YT +F ++ T G DF K + + G + L LWD G
Sbjct: 23 GKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAG 79
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 42.5 bits (101), Expect = 1e-06
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWD 55
G S + ++ Q F Y PT D + K+ ++ +L + D
Sbjct: 21 GKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILD 63
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 41.8 bits (99), Expect = 2e-06
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWD 55
G S + ++ Q F Y PT D +LK I N+ L + D
Sbjct: 30 GKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLD 72
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 41.4 bits (98), Expect = 3e-06
Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G + ++ + + + G D + + LT+ L++ D + ++
Sbjct: 16 GKTSLASLFAGKQERDLHEQL-GEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESC 74
Query: 72 LSSAN 76
L +
Sbjct: 75 LQGGS 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 41.0 bits (97), Expect = 4e-06
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ + F Y PT D + ++++ L + D G
Sbjct: 15 GKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTG 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 40.6 bits (96), Expect = 5e-06
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + ++ Q F +Y PT D + K + + + L + D G
Sbjct: 15 GKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAG 60
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 41.1 bits (97), Expect = 5e-06
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ + F Y PT D + ++++ L + D G
Sbjct: 20 GKSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTG 65
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 40.7 bits (96), Expect = 6e-06
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 12 GTSCFSTRYT--QDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILW 54
G S + +T +F + Y TSG + + +TI + V + L+
Sbjct: 32 GKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELF 76
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 40.7 bits (96), Expect = 6e-06
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWD 55
G + + ++ + EF+ Y PT + K++T+ L L D
Sbjct: 36 GKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVD 78
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 40.3 bits (95), Expect = 8e-06
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + ++ DEF Y PT D + K + + V++ + D G
Sbjct: 26 GKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAG 71
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 39.8 bits (94), Expect = 1e-05
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + ++ DEF Y PT D + K + + V++ + D G
Sbjct: 30 GKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAG 75
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 39.8 bits (94), Expect = 1e-05
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + ++ DEF Y PT D + K + + V++ + D G
Sbjct: 16 GKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAG 61
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 39.8 bits (94), Expect = 1e-05
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + + Q+ F + PT D + K + I L + D G
Sbjct: 15 GKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAG 60
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 39.7 bits (93), Expect = 1e-05
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 1 MAPLYIKVL-----TEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWD 55
MA + K++ G +C +++D+F Y PT + ++ + + + V+L LWD
Sbjct: 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWD 79
Query: 56 IGG 58
G
Sbjct: 80 TAG 82
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 39.8 bits (94), Expect = 1e-05
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWD 55
G S + ++ + +F Y PT F KL+T+ + L L D
Sbjct: 18 GKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVD 60
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 39.5 bits (93), Expect = 2e-05
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + + Q+ F +Y PT + K + I L + D G
Sbjct: 16 GKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAG 61
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 39.4 bits (92), Expect = 2e-05
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT + F +Y PT D + + + + V L LWD G
Sbjct: 42 GKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAG 87
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 39.5 bits (93), Expect = 2e-05
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + + Q+ F +Y PT D + K + I L + D G
Sbjct: 33 GKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAG 78
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 39.3 bits (92), Expect = 2e-05
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 12 GTSCFSTRYTQDEFT--RQYYPTSGPDFHLKLLTIQNRG---VKLILWDIGG 58
G + + + + + T G D + I+++ + L +WD G
Sbjct: 14 GKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAG 65
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 38.9 bits (91), Expect = 3e-05
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C +++ E Y PT + ++ +N L LWD G
Sbjct: 35 GKTCLLLAFSKGEIPTAYVPTVF-ENFSHVMKYKNEEFILHLWDTAG 80
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein;
HET: GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 39.0 bits (91), Expect = 3e-05
Identities = 11/67 (16%), Positives = 23/67 (34%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
G S R T+D F T G F ++ + + +K + S
Sbjct: 19 GKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVI 78
Query: 72 LSSANIS 78
+++ + +
Sbjct: 79 ITNQHNN 85
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 38.4 bits (90), Expect = 3e-05
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ + T + + K + + + +++ + G
Sbjct: 19 GKSSLIHRFLTGSYQ-VLEKTES-EQYKKEMLVDGQTHLVLIREEAG 63
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 38.3 bits (90), Expect = 4e-05
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S RY + ++ P G F K + + + L++ D GG
Sbjct: 32 GKSALVHRYLTGTYVQEESPEGG-RFK-KEIVVDGQSYLLLIRDEGG 76
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 37.6 bits (88), Expect = 9e-05
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S R+ F +Y PT + TI + V + + D G
Sbjct: 40 GKSALVVRFLTKRFIWEYDPTLE-STYRHQATIDDEVVSMEILDTAG 85
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 36.8 bits (86), Expect = 1e-04
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + ++ F +Y P D + T+ ++ V L + D
Sbjct: 33 GKSALTVKFLTKRFISEYDPNLE-DTYSSEETVDHQPVHLRVMDTAD 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 36.7 bits (85), Expect = 2e-04
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C +++DEF Y PT + ++ + + + V+L LWD G
Sbjct: 37 GKTCLLIVFSKDEFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAG 82
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 36.7 bits (85), Expect = 2e-04
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + + F Y PT + ++ L ++ + V L +WD G
Sbjct: 46 GKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAG 91
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 36.9 bits (85), Expect = 2e-04
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 8/55 (14%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLK--------LLTIQNRGVKLILWDIGG 58
G + + + F + T G + K + + WD GG
Sbjct: 53 GKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG 107
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 35.9 bits (83), Expect = 4e-04
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + YT + + +Y PT+ D ++++ R V+L L D G
Sbjct: 32 GKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAG 77
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 35.5 bits (82), Expect = 5e-04
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + + +D F Y PT + + I + ++L LWD G
Sbjct: 19 GKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSG 64
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 35.4 bits (82), Expect = 5e-04
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT + F Y PT D + + V L LWD G
Sbjct: 20 GKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNLGLWDTAG 65
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 35.6 bits (82), Expect = 5e-04
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C Y D F +Y PT D + +T+ + L L+D G
Sbjct: 30 GKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAG 75
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 35.1 bits (81), Expect = 6e-04
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT + F +Y PT D + + + + V L LWD G
Sbjct: 17 GKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAG 62
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 35.2 bits (81), Expect = 7e-04
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + +D + Y PT + + L + + V+L LWD G
Sbjct: 39 GKTAMLQVLAKDCYPETYVPTVF-ENYTACLETEEQRVELSLWDTSG 84
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 34.7 bits (80), Expect = 8e-04
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G + + +D F Y PT + + I + ++L LWD G
Sbjct: 40 GKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSG 85
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 34.3 bits (79), Expect = 0.002
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G +C YT ++F Y PT D + + + V L LWD G
Sbjct: 21 GKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGQIVNLGLWDTAG 66
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 32.9 bits (76), Expect = 0.004
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
G S + + E +G + + + + L+++DI
Sbjct: 14 GKSALARIFGGVEDG-PEAEAAG-HTYDRSIVVDGEEASLMVYDIWE 58
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 30.0 bits (68), Expect = 0.038
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 12 GTSCFSTRYTQDEFTRQYYP-TSGPDFHLKLLTIQNRGVKLILWDI 56
G S + + + G D + + L + +IL D+
Sbjct: 18 GKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDM 63
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 29.8 bits (68), Expect = 0.051
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 23 DEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
+F PT G F+++ I V + LWDIGG
Sbjct: 45 GQFNEDMIPTVG--FNMR--KITKGNVTIKLWDIGG 76
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 29.9 bits (67), Expect = 0.053
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G F+++ T+ + VK +WD+GG
Sbjct: 352 PTVG--FNVE--TVTYKNVKFNVWDVGG 375
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 29.5 bits (67), Expect = 0.065
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G F+++ T+ + +K +WD+GG
Sbjct: 37 PTIG--FNVE--TVTYKNLKFQVWDLGG 60
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 29.5 bits (66), Expect = 0.069
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G F+++ T++ + + +WD+GG
Sbjct: 195 PTIG--FNVE--TVEYKNISFTVWDVGG 218
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 29.1 bits (66), Expect = 0.090
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G F++K T+++RG KL +WD+GG
Sbjct: 48 PTLG--FNIK--TLEHRGFKLNIWDVGG 71
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 29.1 bits (66), Expect = 0.099
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G +++ I + ++WDIGG
Sbjct: 46 PTIG--SNVE--EIVINNTRFLMWDIGG 69
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 29.2 bits (65), Expect = 0.100
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 5 YIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
+ G +C YT + F +Y PT D + + + + V L LWD G
Sbjct: 160 VVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAG 212
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 28.7 bits (65), Expect = 0.11
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G F++K ++Q++G KL +WDIGG
Sbjct: 46 PTQG--FNIK--SVQSQGFKLNVWDIGG 69
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 28.8 bits (65), Expect = 0.12
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G +L+ T+Q + + +WD+GG
Sbjct: 52 PTVG--VNLE--TLQYKNISFEVWDLGG 75
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 28.8 bits (65), Expect = 0.13
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G F ++ ++ + ++D+ G
Sbjct: 53 PTIG--FSIE--KFKSSSLSFTVFDMSG 76
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 28.7 bits (65), Expect = 0.13
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G F+++ T++ + + +WD+GG
Sbjct: 30 PTIG--FNVE--TVEYKNISFTVWDVGG 53
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 28.8 bits (65), Expect = 0.13
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G +++ I + ++WDIGG
Sbjct: 51 PTIG--SNVE--EIVINNTRFLMWDIGG 74
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 28.4 bits (64), Expect = 0.14
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G F+++ T+ + +KL +WD+GG
Sbjct: 48 PTIG--FNVE--TLSYKNLKLNVWDLGG 71
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 28.3 bits (64), Expect = 0.18
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT + + +K +D+GG
Sbjct: 53 PTWH--PTSE--ELAIGNIKFTTFDLGG 76
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 28.0 bits (63), Expect = 0.19
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT G F+++ T++ + + +WD+GG
Sbjct: 59 PTIG--FNVE--TVEYKNICFTVWDVGG 82
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 28.2 bits (63), Expect = 0.19
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 31 PTSGPDF-HLKLLTIQNRGVKLILWDIGG 58
T DF L + ++ + L+ + G
Sbjct: 55 RTLFFDFLPLDIGEVKGFKTRFHLYTVPG 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 28.0 bits (63), Expect = 0.20
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 31 PTSGPDFHLKLLTIQNRGVKLILWDIGG 58
PT + + G+ +D+GG
Sbjct: 55 PTLH--PTSE--ELTIAGMTFTTFDLGG 78
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.23
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 27 RQYYPTSGPDFHLKLLTIQ 45
+ Y S P +K T++
Sbjct: 30 KLYADDSAPALAIK-ATME 47
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo
sapiens} SCOP: c.2.1.2
Length = 272
Score = 27.6 bits (62), Expect = 0.32
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 47 RGVKLILWDIGGKANESSAGLVKTY 71
KL+LWDI E +A K
Sbjct: 54 LKSKLVLWDINKHGLEETAAKCKGL 78
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding
site, enzyme function initiativ; 1.65A {Bacteroides
thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Length = 229
Score = 26.7 bits (59), Expect = 0.73
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 29 YYPTSGPDF---HLKLLTIQNRGVKLILWDIGG 58
++ +SG D +L +++++G+K +L D+GG
Sbjct: 5 HHHSSGVDLGTENLYFQSMKSKGIKNLLIDLGG 37
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 2.3
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 31/86 (36%)
Query: 12 GTS--CFSTRYTQDEFTRQYYPTSGP---DF------HLKLLTIQN--------RGVKLI 52
G + F +E R Y T D L L +G+ ++
Sbjct: 164 GNTDDYF------EEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 53 LWDIGGKANESSAGLVKTYLSSANIS 78
W + +N YL S IS
Sbjct: 217 EW-LENPSNTPDKD----YLLSIPIS 237
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex
IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK
PGV DMU; 1.95A {Bos taurus}
Length = 80
Score = 24.6 bits (53), Expect = 2.8
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 1 MAPLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLK 40
M PL L S + Q RQ + PDFH K
Sbjct: 1 MFPLAKNAL----SRLRVQSIQQAVARQIHQKRAPDFHDK 36
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 24.7 bits (54), Expect = 3.3
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 43 TIQNRGVKLILWDIGGKANESSAGLVKTYLSSA 75
G + L D G + + YL +
Sbjct: 49 AADYDGSGVTLVDFPG--HVKLRYKLSDYLKTR 79
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 24.7 bits (54), Expect = 3.6
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 43 TIQNRGVKLILWDIGGKANESSAGLVKTYLSSA 75
G + L D G + + YL +
Sbjct: 85 AADYDGSGVTLVDFPG--HVKLRYKLSDYLKTR 115
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Length = 307
Score = 24.5 bits (53), Expect = 4.8
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 15/64 (23%)
Query: 7 KVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKL------------LTIQNRGVKLILW 54
+V + +E TR+ YP F ++ ++ N+ + +++
Sbjct: 82 EVENHTKESITFLLKDNEETRKVYPF---KFEFRVNYNLMNNLLEENFSVVNKSDETMIF 138
Query: 55 DIGG 58
+GG
Sbjct: 139 GVGG 142
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein;
enolase, mandelate racemase subgroup, enzyme function
initia EFI; 1.25A {Agrobacterium tumefaciens} PDB:
4dx3_A 2pod_A
Length = 400
Score = 24.1 bits (53), Expect = 6.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 53 LWDIGGKA 60
LWDI GKA
Sbjct: 91 LWDIFGKA 98
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel;
1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB:
2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Length = 738
Score = 23.9 bits (51), Expect = 7.9
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 32 TSGPDFHLKLLT--IQNRGVKLILW 54
T PDF +K + +G+K+++
Sbjct: 413 TPYPDFDVKEIHRYAARKGIKMMMH 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 23.5 bits (51), Expect = 8.8
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 31 PTSGPDFHLKLLTIQN-RGVKLILWDIGG 58
+ + + N RG L L D+ G
Sbjct: 37 TSIT--DSSAIYKVNNNRGNSLTLIDLPG 63
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining
glycosidase; HET: MES; 2.30A {Bacteroides
thetaiotaomicron}
Length = 641
Score = 23.8 bits (51), Expect = 9.1
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 30 YPTSGPDFHLKLLT--IQNRGVKLILW 54
+ LK L ++ V +ILW
Sbjct: 340 LMQVVKEIDLKELVDYAASKNVGIILW 366
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,056,597
Number of extensions: 47162
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 111
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)