RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2599
         (78 letters)



>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 166

 Score = 50.5 bits (120), Expect = 4e-10
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
          G SC   R+ +D+F   +  T G DF +K + I  + VKL +WD  G+  E    +   Y
Sbjct: 14 GKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ--ERFRTITTAY 71

Query: 72 LSSANI 77
             A  
Sbjct: 72 YRGAMG 77


>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score = 51.0 bits (121), Expect = 4e-10
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
          G SC   R++ D +T  Y  T G DF +K + +  + VKL +WD  G+  E    +  +Y
Sbjct: 18 GKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ--ERFRTITSSY 75

Query: 72 LSSANI 77
             ++ 
Sbjct: 76 YRGSHG 81


>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 171

 Score = 50.2 bits (119), Expect = 5e-10
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
          G +C   R+TQ  F      T G DF +K + I    VKL +WD  G+  E    + ++Y
Sbjct: 17 GKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--ERFRSITQSY 74

Query: 72 LSSANI 77
            SAN 
Sbjct: 75 YRSANA 80


>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 173

 Score = 48.2 bits (114), Expect = 4e-09
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
          G +C   R+++D F   +  T G DF ++ + +  + +KL +WD  G+  E    +   Y
Sbjct: 18 GKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ--ERFRTITTAY 75

Query: 72 LSSANI 77
             A  
Sbjct: 76 YRGAMG 81


>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 169

 Score = 44.5 bits (104), Expect = 9e-08
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
          G + F  RY  D FT  +  T G DF +K +   ++ +KL +WD  G+  E    +   Y
Sbjct: 17 GKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ--ERYRTITTAY 74

Query: 72 LSSANI 77
             A  
Sbjct: 75 YRGAMG 80


>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 177

 Score = 42.1 bits (98), Expect = 5e-07
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G S    R+T D F  +   T G DF +K +++     KL +WD  G
Sbjct: 19 GKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65


>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 170

 Score = 36.4 bits (83), Expect = 7e-05
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTS-GPDFHLKLLTIQNRGVKLILWDIGG 58
          G +C   R+    F    + ++ G DF  K+L +    VKL +WD  G
Sbjct: 18 GKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65


>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 186

 Score = 36.4 bits (83), Expect = 7e-05
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 12/76 (15%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNR----------GVKLILWDIGGKAN 61
          G + F  RYT ++F  ++  T G DF  K +    +           V L LWD  G   
Sbjct: 17 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG--Q 74

Query: 62 ESSAGLVKTYLSSANI 77
          E    L   +   A  
Sbjct: 75 ERFRSLTTAFFRDAMG 90


>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 174

 Score = 36.0 bits (82), Expect = 1e-04
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G SC   ++ + +F      T G +F  K++ +  + VKL +WD  G
Sbjct: 17 GKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63


>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 184

 Score = 35.1 bits (79), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G +    +Y   +F+ QY  T G DF  K + + +R V + +WD  G
Sbjct: 14 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 60


>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 175

 Score = 33.7 bits (76), Expect = 8e-04
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G S   +R+T++EF  +   T G +F  + + +  + +K  +WD  G
Sbjct: 16 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 62


>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 166

 Score = 32.5 bits (73), Expect = 0.002
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G SC   ++T+ +F      T G +F  +++ +  + +KL +WD  G
Sbjct: 16 GKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 62


>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 165

 Score = 32.3 bits (72), Expect = 0.003
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G +C + R+    F  +   T G DF  + + I    +K+ LWD  G
Sbjct: 14 GKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60


>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 174

 Score = 31.8 bits (71), Expect = 0.004
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
          G S    RY  ++F  Q + T G +F  K L +    V + +WD  G+
Sbjct: 18 GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 65


>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
          Length = 177

 Score = 31.1 bits (69), Expect = 0.006
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G +C     ++D+F   Y PT   + ++  + +  + V+L LWD  G
Sbjct: 14 GKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAG 59


>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 173

 Score = 31.0 bits (69), Expect = 0.007
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64
          G SC   ++T   F   +  T G +F  +++ I  + +KL +WD  G+ +  S
Sbjct: 15 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 67


>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 170

 Score = 30.8 bits (68), Expect = 0.008
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTY 71
          G S    R+ + +F      T G  F  + + + +  VK  +WD  G+  E    L   Y
Sbjct: 18 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ--ERYHSLAPMY 75

Query: 72 LSSAN 76
             A 
Sbjct: 76 YRGAQ 80


>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 191

 Score = 30.7 bits (68), Expect = 0.009
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFH 38
          G +C    YT ++F  +Y PT   ++ 
Sbjct: 15 GKTCLLISYTTNKFPSEYVPTVFDNYA 41


>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 175

 Score = 30.0 bits (66), Expect = 0.016
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGV-KLILWDIGG 58
          G +    RY  D++++QY  T G DF  K +T+    V  + +WD  G
Sbjct: 14 GKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61


>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 164

 Score = 29.7 bits (65), Expect = 0.019
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
          G S    RY +  FT+ Y  T G DF  + + + +  V+L+LWD  G+
Sbjct: 14 GKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61


>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 167

 Score = 29.5 bits (65), Expect = 0.025
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G +    RY +++F  ++  T G  F  K L I  + V L +WD  G
Sbjct: 15 GKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61


>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 164

 Score = 29.5 bits (65), Expect = 0.026
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGK 59
          G +   TR+  D F   Y  T G DF  K + +++R ++L LWD  G+
Sbjct: 12 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ 59


>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
          Length = 167

 Score = 29.2 bits (64), Expect = 0.032
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64
          G S  + ++ Q  F  +Y PT   D + K + +  +   L + D  G    ++
Sbjct: 15 GKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQFTA 66


>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 167

 Score = 28.0 bits (61), Expect = 0.075
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G S  + ++    F  +Y PT   DF+ K + + +    L + D  G
Sbjct: 15 GKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAG 60


>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
          inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
          Length = 168

 Score = 28.1 bits (61), Expect = 0.086
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFH 38
          G S    R+    F  +Y PT    + 
Sbjct: 14 GKSALVVRFLTKRFIWEYDPTLESTYR 40


>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 179

 Score = 28.1 bits (61), Expect = 0.089
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFH 38
          G +     + +D F   Y PT   ++ 
Sbjct: 14 GKTALLHVFAKDCFPENYVPTVFENYT 40


>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 170

 Score = 27.7 bits (60), Expect = 0.10
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G S    R+  ++F     PT G  F  + +TI    VK  +WD  G
Sbjct: 15 GKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61


>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
          Length = 170

 Score = 27.7 bits (60), Expect = 0.10
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFH 38
          G + F  R+   EF ++Y  T G + H
Sbjct: 15 GKTTFVKRHLTGEFEKKYVATLGVEVH 41


>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 171

 Score = 27.3 bits (59), Expect = 0.14
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESS 64
          G S  + ++ Q  F   Y PT   D + K   I +R  +L + D  G+    +
Sbjct: 17 GKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGA 68


>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 166

 Score = 27.3 bits (59), Expect = 0.16
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G S  + +  Q+ F  +Y PT   D + K + I      L + D  G
Sbjct: 15 GKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAG 60


>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 167

 Score = 27.3 bits (59), Expect = 0.17
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G S    R+ +D F     PT G  F  K +  QN   K ++WD  G
Sbjct: 16 GKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62


>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 185

 Score = 26.9 bits (58), Expect = 0.19
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIG 57
          G +C    Y  D F  +Y PT   D +   +T+  +   L L+D  
Sbjct: 21 GKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 65


>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 171

 Score = 26.5 bits (57), Expect = 0.29
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFH 38
          G S    R+ +  F   Y PT    + 
Sbjct: 14 GKSSLVLRFVKGTFRESYIPTVEDTYR 40


>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
          tamarin (Saguinus oedipus) [TaxId: 9490]}
          Length = 168

 Score = 26.4 bits (57), Expect = 0.30
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFH 38
          G S  + ++  DEF   Y PT    + 
Sbjct: 16 GKSALTLQFMYDEFVEDYEPTKADSYR 42


>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 175

 Score = 26.5 bits (57), Expect = 0.32
 Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIG 57
          G S    R+    +      T    +  K + +  +   +++ +  
Sbjct: 17 GKSSLIHRFLTGSYQ-VLEKTESEQYK-KEMLVDGQTHLVLIREEA 60


>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
          sapiens), ARL8A [TaxId: 9606]}
          Length = 164

 Score = 25.4 bits (54), Expect = 0.64
 Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWD 55
          G + F       +F     PT G +       I    V + LWD
Sbjct: 14 GKTTFVNVIASGQFNEDMIPTVGFNMR----KITKGNVTIKLWD 53


>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
          Length = 183

 Score = 25.0 bits (53), Expect = 0.97
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 12 GTSCFSTRYTQDEFTRQYYP 31
          G +C    YT + F  +Y P
Sbjct: 17 GKTCLLISYTTNAFPGEYIP 36


>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 173

 Score = 25.0 bits (53), Expect = 1.1
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 12 GTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGG 58
          G S  + ++ Q  F   Y PT   D + K+ ++     +L + D  G
Sbjct: 18 GKSALTIQFIQSYFVSDYDPT-IEDSYTKICSVDGIPARLDILDTAG 63


>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 167

 Score = 24.7 bits (52), Expect = 1.4
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 12 GTSCFSTRYTQDEFTRQYYP 31
          G S  + ++ + +F   Y P
Sbjct: 16 GKSSLTIQFVEGQFVDSYDP 35


>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 169

 Score = 24.2 bits (51), Expect = 1.6
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 12 GTSCFSTRYTQDEFTRQYYP 31
          G S  + ++ Q  F   Y P
Sbjct: 16 GKSALTIQFFQKIFVPDYDP 35


>d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752
          {Thermotoga maritima [TaxId: 2336]}
          Length = 193

 Score = 24.0 bits (51), Expect = 2.4
 Identities = 5/34 (14%), Positives = 13/34 (38%)

Query: 43 TIQNRGVKLILWDIGGKANESSAGLVKTYLSSAN 76
           +      + + D+  +   +S  L + Y+   N
Sbjct: 28 ELSREDTHIYMMDVHERRLNASYILARKYVEELN 61


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 23.5 bits (50), Expect = 4.2
 Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 1/60 (1%)

Query: 16  FSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSSA 75
           F+ R     F  +Y                 +  +LIL        E   G  K ++ + 
Sbjct: 616 FAGRIEYTRFYNRYKMLC-KKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNP 674


>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
           catalytic C-terminal domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 370

 Score = 23.2 bits (50), Expect = 4.3
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 18  TRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVK------LILWDIGGKANESSAGLVKTY 71
            ++ QDE    Y         +   + +NRG+K      ++  D G        G +   
Sbjct: 52  DQWMQDEMEIGYIQAPHKTLPVVFDSPRNRGLKEFPIKRVMGPDFGYVTRGPQTGGISGL 111

Query: 72  LSSANI 77
            S  N+
Sbjct: 112 DSFGNL 117


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 23.2 bits (49), Expect = 5.0
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 16  FSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLSS 74
           F  R    EF ++Y   +        +  + +   L++  +    N    G  K +  +
Sbjct: 642 FPNRIVFQEFRQRYEILAANAIPKGFMDGK-QACILMIKALELDPNLYRIGQSKIFFRT 699


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 23.1 bits (49), Expect = 5.6
 Identities = 7/61 (11%), Positives = 19/61 (31%)

Query: 14  SCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSAGLVKTYLS 73
             F +R    +F ++Y   +             +  + +L        + + G  K +  
Sbjct: 660 KGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTKVFFK 719

Query: 74  S 74
           +
Sbjct: 720 A 720


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 23.1 bits (49), Expect = 6.0
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 6   IKVLTEGTSCFSTRYTQDEFTRQYYPTSGPDFHLKLLTIQNRGVKLILWDIGGKANESSA 65
           I++  +G   F +R    EF ++Y   + P+   +         + IL  +     E   
Sbjct: 652 IRICRKG---FPSRLIYSEFKQRYSILA-PNAIPQGFVDGKTVSEKILAGLQMDPAEYRL 707

Query: 66  GLVKTYLSS 74
           G  K +  +
Sbjct: 708 GTTKVFFKA 716


>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId:
          4844]}
          Length = 222

 Score = 22.5 bits (47), Expect = 7.0
 Identities = 9/35 (25%), Positives = 11/35 (31%)

Query: 2  APLYIKVLTEGTSCFSTRYTQDEFTRQYYPTSGPD 36
            L         +C S  Y       Q+ P  GPD
Sbjct: 6  TALSCSNSANSDTCCSPEYGLVVLNMQWAPGYGPD 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0467    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 258,516
Number of extensions: 9303
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 48
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)