BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy26
(1186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 142/561 (25%), Positives = 230/561 (40%), Gaps = 61/561 (10%)
Query: 622 ITIPENA--AVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLN 674
I +PEN+ QE+ R+ DRD ++ R YS++ DQ F I +G + +
Sbjct: 7 INLPENSRGPFPQELVRIRS-DRDKNLSLR--YSVTGPGADQPPTGIFIINPISGQLSVT 63
Query: 675 KPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPV 734
KP+ + + A D + + + + + D+ND+ P F + S+ E +
Sbjct: 64 KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123
Query: 735 NNRFFELVAKDSDLGN--NGFVSYSIIEGNGEDKFGIFPDGF---------MYVRNSLDR 783
+ A D+D N NG + Y I+ + P+ F + V LDR
Sbjct: 124 GTYVMTVTAIDADDPNALNGMLRYRILS---QAPSTPSPNMFTINNETGDIITVAAGLDR 180
Query: 784 ETRDYYALTVLAED---HGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDS 840
E Y L + A D + Y S++ VI + D NDN PEF+ +F V EN D
Sbjct: 181 EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV-DV 239
Query: 841 FVGKLIATDKD----VGRNAELSFALSNAKGDFEI----DSRNGFIKTMRSFDREN---- 888
V L TDKD NA + + G F I +S +G + ++ D E
Sbjct: 240 IVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMF 299
Query: 889 LLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIG 948
+L +N + L + + V V + D N+N P F P ++ EG G
Sbjct: 300 VLTVAAENQVPLAKGIQHPP----QSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAG 354
Query: 949 TQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSK----FN 1004
T + ++ D D + ++ Y +S + ID GQIT +LDRE+ + +N
Sbjct: 355 TMLTTLTAQDPDRYMQQNIRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYN 413
Query: 1005 LKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQA 1064
LA D +S T + I +LD NDNAP + E++ T + A
Sbjct: 414 ATFLASDNGIP---PMSGTGTLQIYLLDINDNAPQVLPQEAETC----ETPEPNSINITA 466
Query: 1065 TDSDIGVNNEVL---FSIGSGNKRDTFHMDPVTG-ILYLHKKLDYEEINSYVLNVTASDG 1120
D DI N + + + ++ + G L+ K+ + E Y + + +D
Sbjct: 467 LDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDS 526
Query: 1121 GTPRLSTIFMFTINVEDCNDN 1141
G P S I + + V C+ N
Sbjct: 527 GNPPKSNISILRVKVCQCDSN 547
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 155/347 (44%), Gaps = 35/347 (10%)
Query: 835 NLPPDS---FVGKLIATDKDVGRNAELSFALSNAKGD------FEIDSRNGFIKTMRSFD 885
NLP +S F +L+ D +N L ++++ D F I+ +G + + D
Sbjct: 8 NLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 886 RENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGA 945
RE + + L A D ++++ + + + + D NDN P+FL + + EG+
Sbjct: 68 RELIAR------FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGS 121
Query: 946 SIGTQVFRVSTMDADE--GLNGDVYYKIIS----GNDDEHFSIDEATGQI-TISKLLDRE 998
GT V V+ +DAD+ LNG + Y+I+S F+I+ TG I T++ LDRE
Sbjct: 122 KPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDRE 181
Query: 999 TVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQ 1058
V ++ L + A D + LS+T I V D NDN P F V EN V+
Sbjct: 182 KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVI 240
Query: 1059 LFHFQATDSD----IGVNNEVLFSIGSGNKRDTFHMDPVT--GILYLHKKLDYEEINSYV 1112
+ + TD D N S G R DP + G++ + K +D+E +V
Sbjct: 241 VANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFV 300
Query: 1113 LNVTA------SDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQ 1153
L V A + G + ++ V D N+NP PN I+RQ
Sbjct: 301 LTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQ 347
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 126/433 (29%), Positives = 193/433 (44%), Gaps = 37/433 (8%)
Query: 740 ELVAKDSDLGNNGFVSYSIIEGNGEDK--FGIF---P-DGFMYVRNSLDRETRDYYALTV 793
ELV SD N + YS+ G G D+ GIF P G + V LDRE + L
Sbjct: 20 ELVRIRSDRDKNLSLRYSV-TGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA 78
Query: 794 LAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD-- 851
A D + + +VI++ID NDN+PEF + + SV E P ++V + A D D
Sbjct: 79 HAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDP 138
Query: 852 -----VGRNAELSFALSNAKGD-FEIDSRNGFIKTMRS-FDRENLLQTTGQNFISLEAT- 903
+ R LS A S + F I++ G I T+ + DRE + Q T + ++AT
Sbjct: 139 NALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT----LIIQATD 194
Query: 904 VSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL 963
+ N + L + + +TD NDN P+F + ++ E + V ++ D D+
Sbjct: 195 MEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPH 253
Query: 964 N--GDVYYKIISGNDDEHFSI----DEATGQITISKLLDRETVSKFNLKVLARDAATV-- 1015
+ Y+I G+ F+I + G +T+ K +D ET F L V A + +
Sbjct: 254 TPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAK 313
Query: 1016 -VSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNE 1074
+ + ST V++ V+D N+N P F I E T L A D D +
Sbjct: 314 GIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQN 372
Query: 1075 VLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEIN--SYVLNVT--ASDGGTPRLSTIFM 1130
+ ++ S + + +DPV G + LD E N + + N T ASD G P +S
Sbjct: 373 IRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGT 431
Query: 1131 FTINVEDCNDNPP 1143
I + D NDN P
Sbjct: 432 LQIYLLDINDNAP 444
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 107/409 (26%), Positives = 169/409 (41%), Gaps = 40/409 (9%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQSIYNL---VVSARSRLSYGKTFVNITLLDLNDNAP 613
P F IN +G++ LDRE + ++L V + I ++D+NDN P
Sbjct: 47 PTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRD--SGVNS----RIFYSLSSNPDDQFKIV-- 665
F ++PE + G + A D D + +N RI S P +
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINN 166
Query: 666 ETNGVIYLNKPIQSPPGSTLTIEIVASD---SGKQSLSSKHSVNVYIQDVNDHTPVFDMS 722
ET +I + + T+ I A+D + LS+ + + + DVND+ P F
Sbjct: 167 ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAM 226
Query: 723 SYETSLLESTPVNNRFFELVA------KDSDLGNNGFVSYSIIEGNGEDKFGIFPD---- 772
++ + E NR +VA KD +Y I G+ +F I D
Sbjct: 227 TFYGEVPE-----NRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSN 281
Query: 773 -GFMYVRNSLDRETRDYYALTVLAEDHG------KYPRSSSVPVVIHIIDENDNKPEFSN 825
G + V +D ET + LTV AE+ ++P S+ V + +ID N+N P F+
Sbjct: 282 DGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAP 340
Query: 826 SSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFA-LSNAKGDFEIDSRNGFIKTMRSF 884
+ + E L + + L A D D + + LS+ +ID NG I T+
Sbjct: 341 NPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVL 400
Query: 885 DRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFL 933
DRE+ N + SDNG P + + +Y+ D NDN+PQ L
Sbjct: 401 DRES--PNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVL 447
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 124/490 (25%), Positives = 177/490 (36%), Gaps = 132/490 (26%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
L T LDRE + + L A D + + + ++D+NDN P F H V + SV
Sbjct: 60 LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV-- 117
Query: 96 NESVLPGTKVLQVIATDNDQGDNAKITYYLSETERKFTNCQQQRPGGSCPKSCVFTVFAR 155
P GS P + V TV A
Sbjct: 118 --------------------------------------------PEGSKPGTYVMTVTAI 133
Query: 156 DHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDENAINGXXXXXXXXXDPD 215
D P N L+ ++++R + + IN
Sbjct: 134 DADDP----------NALNG-----MLRYRILSQAPSTPSPNMFTINNETGDIITVA--- 175
Query: 216 EGLNDREHINKYNLTIIATD-KGNPP--RTATAFLIIHVNDVNDHEPVFEKSEYSAVLSE 272
GL DRE + +Y L I ATD +GNP + TA +I V DVND+ P F + + E
Sbjct: 176 AGL-DREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPE 234
Query: 273 LAPAGSYVAGITATDED----TGVNAQIFYAFVSGNEHQWFEI----NPTSGLITT---- 320
VA +T TD+D NA Y G+ F I N GL+T
Sbjct: 235 NR-VDVIVANLTVTDKDQPHTPAWNAA--YRISGGDPTGRFAILTDPNSNDGLVTVVKPI 291
Query: 321 ------------------KTRDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLEN 362
G +P + + V+++D N E P F N I E
Sbjct: 292 DFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVN-ENPYFAPNPKIIRQEEG 350
Query: 363 SAANTLVATLTASDHDQ--------------------DSITGQLTVKTKLDRETIT---- 398
A T++ TLTA D D+ D + GQ+T LDRE+
Sbjct: 351 LHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNN 410
Query: 399 DYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQY-FKQIPEDTQVGVSIVQVS 457
Y +A D+G PP S T T+ +++ D+NDN P P + + PE + ++
Sbjct: 411 IYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEPNS-----INIT 465
Query: 458 AYDLDCGKNA 467
A D D NA
Sbjct: 466 ALDYDIDPNA 475
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/394 (23%), Positives = 160/394 (40%), Gaps = 59/394 (14%)
Query: 380 DSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQY 439
+ I+GQL+V LDRE I + L+ A D + + + + D+NDN P F +
Sbjct: 54 NPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW 113
Query: 440 FKQIPEDTQVGVSIVQVSAYDLD--CGKNAQVTYSIESGSEAVDGGNRKATENAIVEIIK 497
+PE ++ G ++ V+A D D N + Y I S + + N N +II
Sbjct: 114 NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDII- 172
Query: 498 NSMVETLEFEHYNGYT-----------------------------------FSILEDHDK 522
++ L+ E YT F+ + + +
Sbjct: 173 -TVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGE 231
Query: 523 MQEN-LGRDVGKIKIRNSDMQATIDQ-IKYAIVYGDPKKKFEI----NDRTGEIITAAKL 576
+ EN + V + + + D T Y I GDP +F I N G + +
Sbjct: 232 VPENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPI 291
Query: 577 DREEQSIYNLVVSARSRLSYGKTF---------VNITLLDLNDNAPIFNRDKDEITIPEN 627
D E ++ L V+A +++ K V++T++D+N+N P F + I E
Sbjct: 292 DFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEG 350
Query: 628 AAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETNGVI----YLNKPIQSPPGS 683
G + A+D D + I Y+ S+P + KI NG I L++ + +
Sbjct: 351 LHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNN 410
Query: 684 TLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTP 717
+ASD+G +S ++ +Y+ D+ND+ P
Sbjct: 411 IYNATFLASDNGIPPMSGTGTLQIYLLDINDNAP 444
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 150/373 (40%), Gaps = 94/373 (25%)
Query: 338 VSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHD-QDSITGQL---------- 386
++++D ND +P+F V N S+ E S T V T+TA D D +++ G L
Sbjct: 96 INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPS 155
Query: 387 -----------------TVKTKLDRETITDYELKVIAKD-HGTPPQ--SSTATVFLFIED 426
TV LDRE + Y L + A D G P S+TAT + + D
Sbjct: 156 TPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Query: 427 VNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSEAVDGGNRK 486
VNDN P F ++ ++PE+ +V V + ++ D D Q + + + GG+
Sbjct: 216 VNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKD-----QPHTPAWNAAYRISGGDPT 269
Query: 487 ATENAIVEIIKN----SMVETLEFEHYNGYTFSILEDHD--------------------- 521
+ + N ++V+ ++FE + ++ ++
Sbjct: 270 GRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTV 329
Query: 522 ----------------KMQENL--GRDVGKIKIRNSD--MQATIDQIKYAIVYGDPKKKF 561
+ +E L G + + ++ D MQ I K + DP
Sbjct: 330 IDVNENPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLS----DPANWL 385
Query: 562 EINDRTGEIITAAKLDREEQSIYNLVVSARSRLS-------YGKTFVNITLLDLNDNAP- 613
+I+ G+I T A LDRE ++ N + +A S G + I LLD+NDNAP
Sbjct: 386 KIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQ 445
Query: 614 IFNRDKDEITIPE 626
+ ++ + PE
Sbjct: 446 VLPQEAETCETPE 458
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 125/313 (39%), Gaps = 63/313 (20%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I +++L A D ++I+V D+ND+ P F ++ + E + G+Y
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126
Query: 280 VAGITATDED--TGVNAQIFYAFVSGNEH----QWFEINPTSGLITT------------- 320
V +TA D D +N + Y +S F IN +G I T
Sbjct: 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQY 186
Query: 321 ----KTRDGGPNPKWAYTQLKVSIL---DENDEKPQFTQNVLNISLLENSAANTLVATLT 373
+ D NP + + +++ D ND P+FT + EN + +VA LT
Sbjct: 187 TLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLT 245
Query: 374 ASDHDQ---------------------------DSITGQLTVKTKLDRETITDYELKV-- 404
+D DQ +S G +TV +D ET + L V
Sbjct: 246 VTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAA 305
Query: 405 -----IAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAY 459
+AK PPQ STATV + + DVN+ NP F P+ + E G + ++A
Sbjct: 306 ENQVPLAKGIQHPPQ-STATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQ 363
Query: 460 DLDCGKNAQVTYS 472
D D + Y+
Sbjct: 364 DPDRYMQQNIRYT 376
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 90/238 (37%), Gaps = 55/238 (23%)
Query: 240 PRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYA 299
P +TA + + V DVN++ P F + E AG+ + +TA D D + I Y
Sbjct: 318 PPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYT 376
Query: 300 FVSGNEHQWFEINPTSGLITT--------------------KTRDGGPNPKWAYTQLKVS 339
+S + W +I+P +G ITT D G P L++
Sbjct: 377 KLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIY 435
Query: 340 ILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDSITG--------------- 384
+LD ND PQ E N++ +TA D+D D G
Sbjct: 436 LLDINDNAPQVLPQ--EAETCETPEPNSI--NITALDYDIDPNAGPFAFDLPLSPVTIKR 491
Query: 385 ------------QLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDN 430
QL +K K I YE+ +I D G PP+S+ + + + + + N
Sbjct: 492 NWTINRLNGDFAQLNLKIKFLEAGI--YEVPIIITDSGNPPKSNISILRVKVCQCDSN 547
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 133/262 (50%), Gaps = 23/262 (8%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 102
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAP 1038
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D NDNAP
Sbjct: 163 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKDINDNAP 219
Query: 1039 MFVKTESKISVYENTTVNTQLFHFQATDSD---IGVNNEVLFSIGSGNKRDTFHMDPVT- 1094
+F + + V EN VN ++ + TD D V + +++ DP T
Sbjct: 220 VFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTN 278
Query: 1095 -GILYLHKKLDYEEINSYVLNV 1115
GIL K LD+E Y+L+V
Sbjct: 279 DGILKTAKGLDFEAKQQYILHV 300
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 186/413 (45%), Gaps = 44/413 (10%)
Query: 741 LVAKDSDLGNNGFVSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVL 794
LV S+ V YSI G G DK G+F G++ V LDRE Y L
Sbjct: 21 LVQIKSNRDKETKVFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSH 79
Query: 795 AEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD--- 851
A + +VI + D+NDN+PEF+ F SV E P + V K+ ATD D
Sbjct: 80 AVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDV 139
Query: 852 VGRNAELSFALSNA------KGDFEIDSRNGFIKTMRS-FDRENLLQTTGQNFISLEATV 904
NA +++ + + K F ++ G I + S DRE+ T L
Sbjct: 140 NTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYT------LVVQA 193
Query: 905 SDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISE---GASIGTQVFRVSTMDADE 961
+D L K + + D NDN+P F + Y+ Q+ E A I T +V+ DA
Sbjct: 194 ADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIAT--LKVTDDDAPN 251
Query: 962 GLNGDVYYKIISGNDDEHFSIDEAT---GQITISKLLDRETVSKFNLKVLARDAATVVSN 1018
Y +++ D + + + T G + +K LD E ++ L V + +
Sbjct: 252 TPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGS 311
Query: 1019 QLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFS 1078
+ ST VT+DV+D N+ AP+F+ E ++ V E+ V ++ + A + D ++ ++ +
Sbjct: 312 LVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYR 370
Query: 1079 IGSGNKRDT---FHMDPVTGILYLHKKLDYEEI-----NSYVLNVTASDGGTP 1123
I RDT ++P TG ++ ++D E+ ++YV + A+D G+P
Sbjct: 371 IW----RDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSP 419
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 165/380 (43%), Gaps = 33/380 (8%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSY 724
GVI L + T T+ + A+D + LS+ + ++D+ND+ PVF+ S+Y
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY 226
Query: 725 ETSLLESTPVNNRFFELVAKDSDLGNN-GFVSYSIIEGNGEDKFGIFP-----DGFMYVR 778
+ + E+ VN R L D D N + + + + + +F + DG +
Sbjct: 227 QGQVPENE-VNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTA 285
Query: 779 NSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMEN--- 835
LD E + Y L V E+ + S VP + + + N + +F E
Sbjct: 286 KGLDFEAKQQYILHVRVENEEPF-EGSLVPSTATVTVDVVD----VNEAPIFMPAERRVE 340
Query: 836 LPPDSFVGKLI----ATDKDVGRNAELSFALSNAKGDF-EIDSRNGFIKTMRSFDRENLL 890
+P D VG+ I A + D + ++++ + ++ EI+ G I T DRE+
Sbjct: 341 VPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAE 400
Query: 891 QTTGQNFISLEATVSDNGSP 910
+++L +D+GSP
Sbjct: 401 HVKNSTYVAL-IIATDDGSP 419
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 15/191 (7%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 90
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 1080 GSGNK----RDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 210
Query: 1135 VEDCNDNPPSF 1145
V+D NDN P F
Sbjct: 211 VKDINDNAPVF 221
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 129/318 (40%), Gaps = 84/318 (26%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 426 DVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSEAVDGGNR 485
D+NDN PVF PS Y Q+PE+ +V I + D D A T + ++ V+ ++
Sbjct: 213 DINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDD----APNTPAWKAVYTVVNDPDQ 267
Query: 486 K-------ATENAIVEIIKNSMVETLEFEHYNGYTFSI-LEDHDKMQENL---------- 527
+ T + I++ K L+FE Y + +E+ + + +L
Sbjct: 268 QFVVVTDPTTNDGILKTAKG-----LDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVD 322
Query: 528 -------------------------GRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFE 562
G+++ R D +DQ ++ D E
Sbjct: 323 VVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPD--TFMDQKITYRIWRDTANWLE 380
Query: 563 INDRTGEIITAAKLDREE 580
IN TG I T A++DRE+
Sbjct: 381 INPETGAIFTRAEMDRED 398
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 97/437 (22%), Positives = 154/437 (35%), Gaps = 96/437 (21%)
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQ 442
TG L V LDRE I Y L A + + + D NDN P F +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 443 IPEDTQVGVSIVQVSAYDLD---CGKNAQVTYSIESGSEAVDGGNRKATENAIVEIIKNS 499
+ E G S+++VSA D D NA + Y+I S
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS------------------------ 152
Query: 500 MVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKK 559
+ E H N +T + RD G I + S
Sbjct: 153 --QDPELPHKNMFT-------------VNRDTGVISVLTS-------------------- 177
Query: 560 KFEINDRTGEIITAAKLDREEQSIYNLVVSARSRLSYGKTFVN---ITLLDLNDNAPIFN 616
LDRE Y LVV A G + IT+ D+NDNAP+FN
Sbjct: 178 ---------------GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFN 222
Query: 617 RDKDEITIPENAAVGQEIYVARARDRDSGVNS--RIFYSLSSNPDDQFKIV----ETNGV 670
+ +PEN V I + D D+ + Y++ ++PD QF +V +G+
Sbjct: 223 PSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGI 281
Query: 671 IYLNKPI--QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSL 728
+ K + ++ L + + + + SL + + P+F + +
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIFMPAERRVEV 341
Query: 729 LESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRETRD 787
E V A++ D + ++Y I + I P+ G ++ R +DRE +
Sbjct: 342 PEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTA-NWLEINPETGAIFTRAEMDREDAE 400
Query: 788 Y-----YALTVLAEDHG 799
+ Y ++A D G
Sbjct: 401 HVKNSTYVALIIATDDG 417
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 124/311 (39%), Gaps = 63/311 (20%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT----RDGGPN 328
V ++ATD D V NA I Y VS + F +N +G+I+ T R+ P
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP- 185
Query: 329 PKWAYT-----------------QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVAT 371
YT + +++ D ND P F + + EN N +AT
Sbjct: 186 ---TYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE-VNARIAT 241
Query: 372 LTASDHDQ------------------------DSIT--GQLTVKTKLDRETITDYELKVI 405
L +D D D T G L LD E Y L V
Sbjct: 242 LKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVR 301
Query: 406 AKDHGTPPQS---STATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLD 462
++ S STATV + + DVN+ P+F P++ ++PED VG I +A + D
Sbjct: 302 VENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPD 360
Query: 463 CGKNAQVTYSI 473
+ ++TY I
Sbjct: 361 TFMDQKITYRI 371
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 119 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 30 ETSYLYLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVS 89
+T + + T+G LDRE+ Y L + A D + +T+ D+NDN P+F S
Sbjct: 168 DTGVISVLTSG-LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY 226
Query: 90 DYSVSLNESVLPGTKVLQVIATDND 114
V NE ++ + TD+D
Sbjct: 227 QGQVPENEV---NARIATLKVTDDD 248
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 190/414 (45%), Gaps = 36/414 (8%)
Query: 756 YSIIEGNGED--KFGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPV 809
Y I G G D G+F G+M V LDRE D Y L+ A P + +
Sbjct: 41 YYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEI 100
Query: 810 VIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSNAK 866
I++ID+NDN+P+F+ F SV E + P + V + ATD+D N LS+++
Sbjct: 101 TINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQD 160
Query: 867 GD------FEIDSRNGFIKTMRS-FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVD 919
+ F I+ G I + + DRE + T ++++AT D L + K
Sbjct: 161 PEEPIPNLFTINRETGVISLIGTGLDREKFPEYT----LTVQAT--DLEGAGLSVEGKAI 214
Query: 920 VYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKI---ISGND 976
+ ITD NDN+P F Y + E IG +V R+S D D + G ++ I N+
Sbjct: 215 IQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLD--MPGTPAWQAVYKIRVNE 271
Query: 977 DEHFSI----DEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+I + G +T +K LD E ++ L++ +A S L ++T ++
Sbjct: 272 GGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEP-FSVPLPTSTATVTVTVE 330
Query: 1033 ENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRD-TFHMD 1091
+ + AP FV S++ V E+ + ++ A D D ++ + IG+ R T + D
Sbjct: 331 DVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKD 390
Query: 1092 P--VTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPP 1143
VTG L ++ +Y + N+Y + + +D G + ++V D NDN P
Sbjct: 391 NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP 444
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/397 (25%), Positives = 165/397 (41%), Gaps = 28/397 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQSIYNL---VVSARSRLSYGKTFVNITLLDLNDNAP 613
P+ F I TG ++ LDREE Y L VS + I ++D NDN P
Sbjct: 53 PQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRP 112
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYS-LSSNPDDQ----FKIV 665
F +D ++ E G ++ A D D + N + YS L +P++ F I
Sbjct: 113 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 172
Query: 666 ETNGVIYL---NKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMS 722
GVI L + P TLT++ A+D LS + + I D ND+ P+FD
Sbjct: 173 RETGVISLIGTGLDREKFPEYTLTVQ--ATDLEGAGLSVEGKAIIQITDANDNAPIFDPK 230
Query: 723 SYETSLLESTPVNNRFFELVAKDSDL-GNNGFVSYSIIEGNGEDKFGIFPD-----GFMY 776
+Y T+L+ + L D D+ G + + I N F I D G +
Sbjct: 231 TY-TALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILT 289
Query: 777 VRNSLDRETRDYYALTVLAEDHGKY--PRSSSVPVVIHIIDENDNKPEFSNSSFVFSVME 834
LD E R Y L + E+ + P +S V +++ + P F + V E
Sbjct: 290 TAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSE 349
Query: 835 NLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDF-EIDSRNGFIKTMRSFDRENLLQTT 893
+L + L+A D D + +LS+ + N + ++ NG + + DRE+ +
Sbjct: 350 DLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRES--EYV 407
Query: 894 GQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSP 930
N ++ V+D+G + +++ D NDN P
Sbjct: 408 KNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP 444
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 15/191 (7%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
VYY I D F I+ TG + +++ LDRE K+ VL+ A + + +
Sbjct: 40 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKY---VLSSHAVSENGSPVEE 96
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVN--NEVL-FSI 1079
+TI+V+D+NDN P F + + SV E TQ+ ATD D ++ N VL +SI
Sbjct: 97 PMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSI 156
Query: 1080 GSGNKRDT----FHMDPVTGILYL-HKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
+ + F ++ TG++ L LD E+ Y L V A+D LS I
Sbjct: 157 LKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQ 216
Query: 1135 VEDCNDNPPSF 1145
+ D NDN P F
Sbjct: 217 ITDANDNAPIF 227
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/425 (23%), Positives = 169/425 (39%), Gaps = 52/425 (12%)
Query: 649 RIFYSLSSN-----PDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKH 703
+++YS++ P F+I G + + +P+ + A +
Sbjct: 39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPM 98
Query: 704 SVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDL---GNNGFVSYSIIE 760
+ + + D ND+ P F + S+ E + + A D D NG +SYSI++
Sbjct: 99 EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 158
Query: 761 GNGEDKFGIFPDGFMYVRNS---------LDRETRDYYALTVLAEDHGKYPRSSSVPVVI 811
+ E+ P+ F R + LDRE Y LTV A D S +I
Sbjct: 159 QDPEEPI---PNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII 215
Query: 812 HIIDENDNKPEFSNSSFVFSVMENLPPDSF-VGKLIATDKDVGRNAELSFALS---NAKG 867
I D NDN P F ++ V EN F V +L TD D+ N G
Sbjct: 216 QITDANDNAPIFDPKTYTALVPEN--EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGG 273
Query: 868 DFEI----DSRNGFIKTMRSFD----RENLLQTTGQNFISLEATVSDNGSPRLKDKVKVD 919
F I +S G + T + D ++ +LQ T +N ++ S L
Sbjct: 274 FFNITTDPESNQGILTTAKGLDFELRKQYVLQITVEN--------AEPFSVPLPTSTATV 325
Query: 920 VYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEH 979
+ + +P F+ +V +SE S G ++ + D D+ + Y I GND
Sbjct: 326 TVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI--GNDPAR 383
Query: 980 F-SIDEATGQITISKLLDRETV----SKFNLKVLARDAATVVSNQLSSTTMVTIDVLDEN 1034
+ ++++ G +T + LDRE+ + + + +L D V + T + + VLD N
Sbjct: 384 WLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG---TGTGTLILHVLDVN 440
Query: 1035 DNAPM 1039
DN P+
Sbjct: 441 DNGPV 445
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 140/365 (38%), Gaps = 83/365 (22%)
Query: 156 DHGSPRQDGRTYVTVNLLDANDHDPVIKFRYF---------PSTAGFA--TVDEN----A 200
++GSP ++ +T+N++D ND+ P F P T A DE+ +
Sbjct: 89 ENGSPVEEPME-ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS 147
Query: 201 INGXXXXXXXXXDPDEGLN-------------------DREHINKYNLTIIATDKGNPPR 241
+NG DP+E + DRE +Y LT+ ATD
Sbjct: 148 LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGL 207
Query: 242 TATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDT-GVNAQIFYAF 300
+ II + D ND+ P+F+ Y+A++ E G V ++ TD D G A
Sbjct: 208 SVEGKAIIQITDANDNAPIFDPKTYTALVPE-NEIGFEVQRLSVTDLDMPGTPAWQAVYK 266
Query: 301 VSGNEHQWFEI--NPTS--GLITTKTRDGGPNPKWAYTQLKVS----------------- 339
+ NE +F I +P S G++TT K Q+ V
Sbjct: 267 IRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVT 326
Query: 340 -ILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDSI---------------- 382
+++ +E P F V + + E+ + + +L A D D+ I
Sbjct: 327 VTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLT 386
Query: 383 ----TGQLTVKTKLDRETI----TDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVF 434
G +T LDRE+ Y + ++ D G + T T+ L + DVNDN PV
Sbjct: 387 VNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVP 446
Query: 435 YPSQY 439
P +
Sbjct: 447 SPRVF 451
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/439 (22%), Positives = 160/439 (36%), Gaps = 110/439 (25%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE +KY L+ A + P + I+V D ND+ P F + + + E G+
Sbjct: 73 DREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQ 132
Query: 280 VAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTRDGGPNPKWAYTQLKVS 339
V ++ATDED +++ +G+ L S
Sbjct: 133 VMAVSATDEDDNIDS-------------------LNGV------------------LSYS 155
Query: 340 ILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDSITGQLTVKTKLDRETITD 399
IL ++ E+P N+ I+ T V +L + D+ E +
Sbjct: 156 ILKQDPEEP--IPNLFTIN------RETGVISLIGTGLDR---------------EKFPE 192
Query: 400 YELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAY 459
Y L V A D S + I D NDN P+F P Y +PE+ ++G + ++S
Sbjct: 193 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVT 251
Query: 460 DLDC-GKNA-QVTYSIESGSEAVDGGNRKATENAIVEIIKNSMVETLEFEHYNGYTFSI- 516
DLD G A Q Y I +GG T + + + L+FE Y I
Sbjct: 252 DLDMPGTPAWQAVYKIRVN----EGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQIT 307
Query: 517 ---------------------LEDHDK------------MQENLGRDVGKIKIRNSDM-Q 542
+ED ++ + E+L R I + D +
Sbjct: 308 VENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDK 367
Query: 543 ATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYN-------LVVSARSRLS 595
I ++ Y + DP + +N G + LDRE + + N LV +
Sbjct: 368 QQIQKLSY-FIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG 426
Query: 596 YGKTFVNITLLDLNDNAPI 614
G + + +LD+NDN P+
Sbjct: 427 TGTGTLILHVLDVNDNGPV 445
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/396 (21%), Positives = 156/396 (39%), Gaps = 73/396 (18%)
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQ 442
TG + V LDRE Y L A P + + + D NDN P F +
Sbjct: 63 TGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGS 122
Query: 443 IPEDTQVGVSIVQVSAYDLDC---GKNAQVTYSI--ESGSEAVDGGNRKATENAIVEIIK 497
+ E Q G ++ VSA D D N ++YSI + E + E ++ +I
Sbjct: 123 VREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG 182
Query: 498 NSMVETLEFEHYNGYTFSI-----------LEDHDKMQ---------------------E 525
L+ E + YT ++ +E +Q E
Sbjct: 183 TG----LDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 238
Query: 526 N-LGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEIND------------RTGEIIT 572
N +G +V ++ + + DM T + VY K +N+ G + T
Sbjct: 239 NEIGFEVQRLSVTDLDMPGTP---AWQAVY-----KIRVNEGGFFNITTDPESNQGILTT 290
Query: 573 AAKLDREEQSIYNLVVSARSR------LSYGKTFVNITLLDLNDNAPIFNRDKDEITIPE 626
A LD E + Y L ++ + L V +T+ D+N+ AP F + + E
Sbjct: 291 AKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSE 349
Query: 627 NAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETNGVIY----LNKPIQSPPG 682
+ + G++I A+D D ++ Y + ++P + + NG++ L++ +
Sbjct: 350 DLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKN 409
Query: 683 STLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPV 718
+T T+ ++ +D G + ++ +++ DVND+ PV
Sbjct: 410 NTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 445
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 35 YLQTTGKLDRETVDFYQLNISA-RDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSV 93
++ T LDRE D Y L+ A + G+P +++ + ++D NDN P F V +
Sbjct: 65 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEP-MEITINVIDQNDNRPKFTQDV--FRG 121
Query: 94 SLNESVLPGTKVLQVIATDND 114
S+ E V PGT+V+ V ATD D
Sbjct: 122 SVREGVQPGTQVMAVSATDED 142
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 1073 NEVLFSI---GSGNK-RDTFHMDPVTGILYLHKKLDYEEINSYVLNVTA-SDGGTPRLST 1127
N+V +SI G+ N + F ++ TG + + + LD EE + YVL+ A S+ G+P +
Sbjct: 38 NKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP-VEE 96
Query: 1128 IFMFTINVEDCNDNPPSFPNTAIVRQIRE 1156
TINV D NDN P F +RE
Sbjct: 97 PMEITINVIDQNDNRPKFTQDVFRGSVRE 125
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins Model
Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins Model
Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins Model
Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 190/414 (45%), Gaps = 36/414 (8%)
Query: 756 YSIIEGNGED--KFGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPV 809
Y I G G D G+F G+M V LDRE D Y L+ A P + +
Sbjct: 190 YYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEI 249
Query: 810 VIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSNAK 866
I++ID+NDN+P+F+ F SV E + P + V + ATD+D N LS+++
Sbjct: 250 TINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQD 309
Query: 867 GD------FEIDSRNGFIKTMRS-FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVD 919
+ F I+ G I + + DRE + T ++++AT D L + K
Sbjct: 310 PEEPIPNLFTINRETGVISLIGTGLDREKFPEYT----LTVQAT--DLEGAGLSVEGKAI 363
Query: 920 VYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKI---ISGND 976
+ ITD NDN+P F Y + E IG +V R+S D D + G ++ I N+
Sbjct: 364 IQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLD--MPGTPAWQAVYKIRVNE 420
Query: 977 DEHFSI----DEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+I + G +T +K LD E ++ L++ +A S L ++T ++
Sbjct: 421 GGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEP-FSVPLPTSTATVTVTVE 479
Query: 1033 ENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRD-TFHMD 1091
+ + AP FV S++ V E+ + ++ A D D ++ + IG+ R T + D
Sbjct: 480 DVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKD 539
Query: 1092 P--VTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPP 1143
VTG L ++ +Y + N+Y + + +D G + ++V D NDN P
Sbjct: 540 NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP 593
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/397 (25%), Positives = 165/397 (41%), Gaps = 28/397 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQSIYNL---VVSARSRLSYGKTFVNITLLDLNDNAP 613
P+ F I TG ++ LDREE Y L VS + I ++D NDN P
Sbjct: 202 PQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRP 261
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYS-LSSNPDDQ----FKIV 665
F +D ++ E G ++ A D D + N + YS L +P++ F I
Sbjct: 262 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 321
Query: 666 ETNGVIYL---NKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMS 722
GVI L + P TLT++ A+D LS + + I D ND+ P+FD
Sbjct: 322 RETGVISLIGTGLDREKFPEYTLTVQ--ATDLEGAGLSVEGKAIIQITDANDNAPIFDPK 379
Query: 723 SYETSLLESTPVNNRFFELVAKDSDL-GNNGFVSYSIIEGNGEDKFGIFPD-----GFMY 776
+Y T+L+ + L D D+ G + + I N F I D G +
Sbjct: 380 TY-TALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILT 438
Query: 777 VRNSLDRETRDYYALTVLAEDHGKY--PRSSSVPVVIHIIDENDNKPEFSNSSFVFSVME 834
LD E R Y L + E+ + P +S V +++ + P F + V E
Sbjct: 439 TAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSE 498
Query: 835 NLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDF-EIDSRNGFIKTMRSFDRENLLQTT 893
+L + L+A D D + +LS+ + N + ++ NG + + DRE+ +
Sbjct: 499 DLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRES--EYV 556
Query: 894 GQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSP 930
N ++ V+D+G + +++ D NDN P
Sbjct: 557 KNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP 593
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 15/191 (7%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
VYY I D F I+ TG + +++ LDRE K+ VL+ A + + +
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKY---VLSSHAVSENGSPVEE 245
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVN--NEVL-FSI 1079
+TI+V+D+NDN P F + + SV E TQ+ ATD D ++ N VL +SI
Sbjct: 246 PMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSI 305
Query: 1080 GSGNKRDT----FHMDPVTGILYL-HKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
+ + F ++ TG++ L LD E+ Y L V A+D LS I
Sbjct: 306 LKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQ 365
Query: 1135 VEDCNDNPPSF 1145
+ D NDN P F
Sbjct: 366 ITDANDNAPIF 376
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 101/425 (23%), Positives = 169/425 (39%), Gaps = 52/425 (12%)
Query: 649 RIFYSLSSN-----PDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKH 703
+++YS++ P F+I G + + +P+ + A +
Sbjct: 188 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPM 247
Query: 704 SVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDL---GNNGFVSYSIIE 760
+ + + D ND+ P F + S+ E + + A D D NG +SYSI++
Sbjct: 248 EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 307
Query: 761 GNGEDKFGIFPDGFMYVRNS---------LDRETRDYYALTVLAEDHGKYPRSSSVPVVI 811
+ E+ P+ F R + LDRE Y LTV A D S +I
Sbjct: 308 QDPEEPI---PNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII 364
Query: 812 HIIDENDNKPEFSNSSFVFSVMENLPPDSF-VGKLIATDKDVGRNAELSFALS---NAKG 867
I D NDN P F ++ V EN F V +L TD D+ N G
Sbjct: 365 QITDANDNAPIFDPKTYTALVPEN--EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGG 422
Query: 868 DFEI----DSRNGFIKTMRSFD----RENLLQTTGQNFISLEATVSDNGSPRLKDKVKVD 919
F I +S G + T + D ++ +LQ T +N ++ S L
Sbjct: 423 FFNITTDPESNQGILTTAKGLDFELRKQYVLQITVEN--------AEPFSVPLPTSTATV 474
Query: 920 VYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEH 979
+ + +P F+ +V +SE S G ++ + D D+ + Y I GND
Sbjct: 475 TVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI--GNDPAR 532
Query: 980 F-SIDEATGQITISKLLDRETV----SKFNLKVLARDAATVVSNQLSSTTMVTIDVLDEN 1034
+ ++++ G +T + LDRE+ + + + +L D V + T + + VLD N
Sbjct: 533 WLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG---TGTGTLILHVLDVN 589
Query: 1035 DNAPM 1039
DN P+
Sbjct: 590 DNGPV 594
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 96/411 (23%), Positives = 156/411 (37%), Gaps = 89/411 (21%)
Query: 156 DHGSPRQDGRTYVTVNLLDANDHDPVIKFRYF---------PSTAGFA--TVDEN----A 200
++GSP ++ +T+N++D ND+ P F P T A DE+ +
Sbjct: 238 ENGSPVEEPME-ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS 296
Query: 201 INGXXXXXXXXXDPDEGLN-------------------DREHINKYNLTIIATDKGNPPR 241
+NG DP+E + DRE +Y LT+ ATD
Sbjct: 297 LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGL 356
Query: 242 TATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDT-GVNAQIFYAF 300
+ II + D ND+ P+F+ Y+A++ E G V ++ TD D G A
Sbjct: 357 SVEGKAIIQITDANDNAPIFDPKTYTALVPE-NEIGFEVQRLSVTDLDMPGTPAWQAVYK 415
Query: 301 VSGNEHQWFEI--NPTS--GLITTKTRDGGPNPKWAYTQLKVS----------------- 339
+ NE +F I +P S G++TT K Q+ V
Sbjct: 416 IRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVT 475
Query: 340 -ILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDSI---------------- 382
+++ +E P F V + + E+ + + +L A D D+ I
Sbjct: 476 VTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLT 535
Query: 383 ----TGQLTVKTKLDRETI----TDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVF 434
G +T LDRE+ Y + ++ D G + T T+ L + DVNDN PV
Sbjct: 536 VNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVP 595
Query: 435 YPSQY--FKQIPEDTQVGVSIVQVS----AYDLDCGKNAQVTYSIESGSEA 479
P + Q PE + +S + Y + + +T+ E S+
Sbjct: 596 SPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKG 646
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 99/439 (22%), Positives = 160/439 (36%), Gaps = 110/439 (25%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE +KY L+ A + P + I+V D ND+ P F + + + E G+
Sbjct: 222 DREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQ 281
Query: 280 VAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTRDGGPNPKWAYTQLKVS 339
V ++ATDED +++ +G+ L S
Sbjct: 282 VMAVSATDEDDNIDS-------------------LNGV------------------LSYS 304
Query: 340 ILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDSITGQLTVKTKLDRETITD 399
IL ++ E+P N+ I+ T V +L + D+ E +
Sbjct: 305 ILKQDPEEP--IPNLFTIN------RETGVISLIGTGLDR---------------EKFPE 341
Query: 400 YELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAY 459
Y L V A D S + I D NDN P+F P Y +PE+ ++G + ++S
Sbjct: 342 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVT 400
Query: 460 DLDC-GKNA-QVTYSIESGSEAVDGGNRKATENAIVEIIKNSMVETLEFEHYNGYTFSI- 516
DLD G A Q Y I +GG T + + + L+FE Y I
Sbjct: 401 DLDMPGTPAWQAVYKIRVN----EGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQIT 456
Query: 517 ---------------------LEDHDK------------MQENLGRDVGKIKIRNSDM-Q 542
+ED ++ + E+L R I + D +
Sbjct: 457 VENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDK 516
Query: 543 ATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYN-------LVVSARSRLS 595
I ++ Y + DP + +N G + LDRE + + N LV +
Sbjct: 517 QQIQKLSY-FIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG 575
Query: 596 YGKTFVNITLLDLNDNAPI 614
G + + +LD+NDN P+
Sbjct: 576 TGTGTLILHVLDVNDNGPV 594
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/396 (21%), Positives = 156/396 (39%), Gaps = 73/396 (18%)
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQ 442
TG + V LDRE Y L A P + + + D NDN P F +
Sbjct: 212 TGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGS 271
Query: 443 IPEDTQVGVSIVQVSAYDLDC---GKNAQVTYSI--ESGSEAVDGGNRKATENAIVEIIK 497
+ E Q G ++ VSA D D N ++YSI + E + E ++ +I
Sbjct: 272 VREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG 331
Query: 498 NSMVETLEFEHYNGYTFSI-----------LEDHDKMQ---------------------E 525
L+ E + YT ++ +E +Q E
Sbjct: 332 TG----LDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 387
Query: 526 N-LGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEIND------------RTGEIIT 572
N +G +V ++ + + DM T + VY K +N+ G + T
Sbjct: 388 NEIGFEVQRLSVTDLDMPGTP---AWQAVY-----KIRVNEGGFFNITTDPESNQGILTT 439
Query: 573 AAKLDREEQSIYNLVVSARSR------LSYGKTFVNITLLDLNDNAPIFNRDKDEITIPE 626
A LD E + Y L ++ + L V +T+ D+N+ AP F + + E
Sbjct: 440 AKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSE 498
Query: 627 NAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETNGVIY----LNKPIQSPPG 682
+ + G++I A+D D ++ Y + ++P + + NG++ L++ +
Sbjct: 499 DLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKN 558
Query: 683 STLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPV 718
+T T+ ++ +D G + ++ +++ DVND+ PV
Sbjct: 559 NTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 594
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 35 YLQTTGKLDRETVDFYQLNISA-RDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSV 93
++ T LDRE D Y L+ A + G+P +++ + ++D NDN P F V +
Sbjct: 214 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEP-MEITINVIDQNDNRPKFTQDV--FRG 270
Query: 94 SLNESVLPGTKVLQVIATDND 114
S+ E V PGT+V+ V ATD D
Sbjct: 271 SVREGVQPGTQVMAVSATDED 291
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 1073 NEVLFSI---GSGNK-RDTFHMDPVTGILYLHKKLDYEEINSYVLNVTA-SDGGTPRLST 1127
N+V +SI G+ N + F ++ TG + + + LD EE + YVL+ A S+ G+P +
Sbjct: 187 NKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP-VEE 245
Query: 1128 IFMFTINVEDCNDNPPSFPNTAIVRQIRE 1156
TINV D NDN P F +RE
Sbjct: 246 PMEITINVIDQNDNRPKFTQDVFRGSVRE 274
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 152/314 (48%), Gaps = 22/314 (7%)
Query: 825 NSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSN--AKGDFEIDSRNGFIKTMR 882
N FV P VG+L TD D G + ++ + LS A F+I+ G I ++
Sbjct: 5 NQMFVLEEFSG-PEPILVGRL-HTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIK 61
Query: 883 SFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQIS 942
DRE + T ++ +A + P L+ + + + D NDN+P+FL PY +
Sbjct: 62 RLDREEKAEYT----LTAQAVDFETNKP-LEPPSEFIIKVQDINDNAPEFLNGPYHATVP 116
Query: 943 EGASIGTQVFRVSTMDADEGLNGD---VYYKIISGNDDEHFSIDEATGQI-TISKLLDRE 998
E + +GT V V+ DAD+ + G+ + Y I+ G +FSI+ T I T +DRE
Sbjct: 117 EMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ--PYFSIEPETAIIKTALPNMDRE 174
Query: 999 TVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQ 1058
++ + + A+D S LS TT +T+ + D NDN P F ++ SV E+ + T
Sbjct: 175 AKEEYLVVIQAKDMGGH-SGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTA 233
Query: 1059 LFHFQATDSDIGVNNEVLFSIGSGNKRDTFHM----DPVTGILYLHKKLDYEEINSYVLN 1114
+ +A D DIG N + + I G+ F + G++ L K LD+E SY L
Sbjct: 234 IGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLK 293
Query: 1115 VTASDGGT-PRLST 1127
V A++ PR S+
Sbjct: 294 VEAANIHIDPRFSS 307
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 136/294 (46%), Gaps = 25/294 (8%)
Query: 531 VGKIKIRNSDMQATIDQIKYAIVYGDPKKK-FEINDRTGEIITAAKLDREEQSIYNLVVS 589
VG++ ++D+ +IKY I+ GD F+IND TG+I +LDREE++ Y L
Sbjct: 21 VGRL---HTDLDPGSKKIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQ 76
Query: 590 A-----RSRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDS 644
A L F+ I + D+NDNAP F T+PE + +G + A D D
Sbjct: 77 AVDFETNKPLEPPSEFI-IKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADD 135
Query: 645 ---GVNSRIFYS-LSSNPDDQFKIVETNGVIYLNKP-IQSPPGSTLTIEIVASDSGKQS- 698
G ++++ YS L P F I +I P + + I A D G S
Sbjct: 136 PVYGNSAKLVYSILEGQP--YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSG 193
Query: 699 -LSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYS 757
LS ++ V + DVND+ P F S Y S+ E + + A D D+G N SY
Sbjct: 194 GLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYD 253
Query: 758 IIEGNGEDKFGI-----FPDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSS 806
II+G+G F I DG + +R LD ET+ Y L V A + PR SS
Sbjct: 254 IIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSS 307
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 109/246 (44%), Gaps = 13/246 (5%)
Query: 773 GFMYVRNSLDRETRDYYALTVLAED-HGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFS 831
G ++ LDRE + Y LT A D P +I + D NDN PEF N + +
Sbjct: 55 GDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHAT 114
Query: 832 VMENLPPDSFVGKLIATDKD---VGRNAELSFALSNAKGDFEIDSRNGFIKT-MRSFDRE 887
V E + V + ATD D G +A+L +++ + F I+ IKT + + DRE
Sbjct: 115 VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDRE 174
Query: 888 NLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASI 947
+ + ++A S L + V +TD NDN P+F ++ Y + E +
Sbjct: 175 ----AKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVL 230
Query: 948 GTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSI----DEATGQITISKLLDRETVSKF 1003
GT + RV D D G N Y II G+ F I G I + K LD ET +
Sbjct: 231 GTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSY 290
Query: 1004 NLKVLA 1009
LKV A
Sbjct: 291 TLKVEA 296
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 136/273 (49%), Gaps = 21/273 (7%)
Query: 632 QEIYVARAR-DRDSGVNSRIFYSLSSNPDDQ-FKIVETNGVIYLNKPIQSPPGSTLTIEI 689
+ I V R D D G + +I Y LS + F+I + G I+ K + + T+
Sbjct: 17 EPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTA 75
Query: 690 VASD-SGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSD- 747
A D + L + +QD+ND+ P F Y ++ E + + + A D+D
Sbjct: 76 QAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADD 135
Query: 748 --LGNNGFVSYSIIEGNGEDKFGIFPDGFMYVRNSL---DRETRDYYALTVLAEDHGKYP 802
GN+ + YSI+EG + F I P+ + ++ +L DRE ++ Y + + A+D G +
Sbjct: 136 PVYGNSAKLVYSILEG--QPYFSIEPETAI-IKTALPNMDREAKEEYLVVIQAKDMGGHS 192
Query: 803 --RSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSF 860
S + + + + D NDN P+F+ S + FSV E++ + +G++ A D+D+G NA+ S+
Sbjct: 193 GGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSY 252
Query: 861 ALSNAKGD--FEIDS----RNGFIKTMRSFDRE 887
+ + G FEI S ++G I+ + D E
Sbjct: 253 DIIDGDGTALFEITSDAQAQDGVIRLRKPLDFE 285
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 112/261 (42%), Gaps = 57/261 (21%)
Query: 220 DREHINKYNLTIIATD-KGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGS 278
DRE +Y LT A D + N P + II V D+ND+ P F Y A + E++ G+
Sbjct: 64 DREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGT 123
Query: 279 YVAGITATDEDT---GVNAQIFYAFVSGNEHQWFEINPTSGLITTKTRDGGPNPKWAY-- 333
V +TATD D G +A++ Y+ + G +F I P + +I T + K Y
Sbjct: 124 SVTNVTATDADDPVYGNSAKLVYSILEG--QPYFSIEPETAIIKTALPNMDREAKEEYLV 181
Query: 334 -TQLK----------------VSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASD 376
Q K V++ D ND P+F Q++ + S+ E+ T + + A+D
Sbjct: 182 VIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKAND 241
Query: 377 HD-----QDS-------------IT-------GQLTVKTKLDRETITDYELKVIAKD-HG 410
D Q S IT G + ++ LD ET Y LKV A + H
Sbjct: 242 QDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHI 301
Query: 411 TP------PQSSTATVFLFIE 425
P P TATV + +E
Sbjct: 302 DPRFSSRGPFKDTATVKIVVE 322
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 10/172 (5%)
Query: 980 FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPM 1039
F I++ TG I K LDRE +++ L A D T + L + I V D NDNAP
Sbjct: 48 FQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET--NKPLEPPSEFIIKVQDINDNAPE 105
Query: 1040 FVKTESKISVYENTTVNTQLFHFQATDSD---IGVNNEVLFSIGSGNKRDTFHMDPVTGI 1096
F+ +V E + + T + + ATD+D G + ++++SI G + F ++P T I
Sbjct: 106 FLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG--QPYFSIEPETAI 163
Query: 1097 LYLH-KKLDYEEINSYVLNVTASD--GGTPRLSTIFMFTINVEDCNDNPPSF 1145
+ +D E Y++ + A D G + LS T+ + D NDNPP F
Sbjct: 164 IKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKF 215
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 121/299 (40%), Gaps = 64/299 (21%)
Query: 269 VLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSG------------ 316
VL E + + G TD D G + +I Y F+IN +G
Sbjct: 9 VLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE 67
Query: 317 ----LITTKTRDGGPN-PKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVAT 371
+T + D N P ++ + + D ND P+F + ++ E S T V
Sbjct: 68 KAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTN 127
Query: 372 LTASDHDQDSITGQ---------------------LTVKTKL---DRETITDYELKVIAK 407
+TA+D D D + G +KT L DRE +Y + + AK
Sbjct: 128 VTATDAD-DPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAK 186
Query: 408 DHG--TPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGK 465
D G + S T T+ + + DVNDN P F S Y +PED +G +I +V A D D G+
Sbjct: 187 DMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGE 246
Query: 466 NAQVTYSIESGSEAVDGGNRKATENAIVEIIKNSMVE--------TLEFEHYNGYTFSI 516
NAQ +Y I G DG A+ EI ++ + L+FE YT +
Sbjct: 247 NAQSSYDIIDG----DG-------TALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKV 294
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 42 LDRETVDFYQLNISARD--GGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSLNESV 99
+DRE + Y + I A+D G + G + VT+ DVNDNPP FA S+ Y S+ E V
Sbjct: 171 MDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSL--YHFSVPEDV 228
Query: 100 LPGTKVLQVIATDNDQGDNAKITY 123
+ GT + +V A D D G+NA+ +Y
Sbjct: 229 VLGTAIGRVKANDQDIGENAQSSY 252
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 1065 TDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPR 1124
TD D G + ++ + + F ++ +TG ++ K+LD EE Y L A D T +
Sbjct: 26 TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNK 84
Query: 1125 -LSTIFMFTINVEDCNDNPPSFPN 1147
L F I V+D NDN P F N
Sbjct: 85 PLEPPSEFIIKVQDINDNAPEFLN 108
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGT------PTRYGYLQVNVTILDVNDNPPIFAHSVS 89
+ +LDRE Y L A D T P+ + + + D+NDN P F +
Sbjct: 57 IHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEF-----IIKVQDINDNAPEFLNG-- 109
Query: 90 DYSVSLNESVLPGTKVLQVIATDNDQ---GDNAKITYYLSETERKFT 133
Y ++ E + GT V V ATD D G++AK+ Y + E + F+
Sbjct: 110 PYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFS 156
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 17/182 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 51 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 104
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 105 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 164
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAP 1038
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D NDNAP
Sbjct: 165 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKDINDNAP 221
Query: 1039 MF 1040
+F
Sbjct: 222 VF 223
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 15/191 (7%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 36 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 92
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 93 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 152
Query: 1080 GSGNK----RDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 153 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 212
Query: 1135 VEDCNDNPPSF 1145
V+D NDN P F
Sbjct: 213 VKDINDNAPVF 223
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 84/195 (43%), Gaps = 23/195 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 36 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVK 917
K F ++ G I + S DRE+ T L +D L K
Sbjct: 155 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYT------LVVQAADLQGEGLSTTAK 208
Query: 918 VDVYITDQNDNSPQF 932
+ + D NDN+P F
Sbjct: 209 AVITVKDINDNAPVF 223
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 29/132 (21%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 155 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 214
Query: 426 DVNDNNPVFYPS 437
D+NDN PVF PS
Sbjct: 215 DINDNAPVFNPS 226
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 49 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 168
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMS 722
GVI L + T T+ + A+D + LS+ + ++D+ND+ PVF+ S
Sbjct: 169 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS 226
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 18/201 (8%)
Query: 640 RDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
RD+++ ++FYS++ D+ F I G + + +P+ + + A S
Sbjct: 30 RDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS 85
Query: 695 GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF- 753
+++ + + + D ND+ P F +E S+ E ++ A D+D N +
Sbjct: 86 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 145
Query: 754 --VSYSIIEGNGE----DKFGIFPD-GFMYVRNS-LDRETRDYYALTVLAEDHGKYPRSS 805
++Y+I+ + E + F + D G + V S LDRE+ Y L V A D S+
Sbjct: 146 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLST 205
Query: 806 SVPVVIHIIDENDNKPEFSNS 826
+ VI + D NDN P F+ S
Sbjct: 206 TAKAVITVKDINDNAPVFNPS 226
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 85/230 (36%), Gaps = 64/230 (27%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 61 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 120
Query: 95 LNESVLPGTKVLQVIATDNDQGDNAKITYYLSETERKFTNCQQQRPGGSCPKSCVFTVFA 154
E +PGT V++V ATD D N TY + +T+ +
Sbjct: 121 --EGAVPGTSVMKVSATDADDDVN---TYN---------------------AAIAYTIVS 154
Query: 155 RDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDENAINGXXXXXXXXXDP 214
+D P + N+ N VI T+G
Sbjct: 155 QDPELPHK--------NMFTVNRDTGVISVL----TSGL--------------------- 181
Query: 215 DEGLNDREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKS 264
DRE Y L + A D + TA +I V D+ND+ PVF S
Sbjct: 182 -----DRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS 226
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 97/287 (33%), Gaps = 91/287 (31%)
Query: 345 DEKPQFTQNVLNISLLENSAANTLV-ATLTASDHDQDSI--------TGQLTVKTKLDRE 395
+EK +F +N++ I N T V ++T D+ + TG L V LDRE
Sbjct: 14 NEKGEFPKNLVQIK--SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE 71
Query: 396 TITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQ 455
I Y L A + + + D NDN P F + + E G S+++
Sbjct: 72 AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 131
Query: 456 VSAYDLD---CGKNAQVTYSIESGSEAVDGGNRKATENAIVEIIKNSMVETLEFEHYNGY 512
VSA D D NA + Y+I S + E H N +
Sbjct: 132 VSATDADDDVNTYNAAIAYTIVS--------------------------QDPELPHKNMF 165
Query: 513 TFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIIT 572
T + RD G I + S
Sbjct: 166 T-------------VNRDTGVISVLTS--------------------------------- 179
Query: 573 AAKLDREEQSIYNLVVSARSRLSYGKTFVN---ITLLDLNDNAPIFN 616
LDRE Y LVV A G + IT+ D+NDNAP+FN
Sbjct: 180 --GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFN 224
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 69 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 128
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 129 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 178
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 95 EIVITVTDQNDNRPEF 110
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 30 ETSYLYLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHS 87
+T + + T+G LDRE+ Y L + A D + +T+ D+NDN P+F S
Sbjct: 170 DTGVISVLTSG-LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS 226
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 12/201 (5%)
Query: 941 ISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV 1000
ISE +G+ V ++ D D N + + + F+++ TG + + + LDRET
Sbjct: 19 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 75
Query: 1001 SKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLF 1060
S+F ++ D V++ + V I V D NDNAP F + + ENT V T +F
Sbjct: 76 SEFTVEFSVSDHQGVITRK------VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIF 129
Query: 1061 HFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDG 1120
ATD D+G VL+S + F +D GI+ + ++LDYE +Y L V A+D
Sbjct: 130 IVNATDPDLGAGGSVLYSFQPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 187
Query: 1121 GTPR-LSTIFMFTINVEDCND 1140
R LST+ I + D D
Sbjct: 188 DKTRPLSTLANLAIIITDMQD 208
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 821 PEFSNSSF--VFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGD--FEIDSRNG 876
P F+N F + E+ P S V +L+A D D N L F +S + F ++ G
Sbjct: 6 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 62
Query: 877 FIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTP 936
+ + DRE T F ++E +VSD+ + KV++ + D NDN+P F P
Sbjct: 63 VVWLRQPLDRE-----TKSEF-TVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQP 113
Query: 937 YKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLD 996
Y V+I E +GT +F V+ D D G G V Y + F+ID A G +T+ + LD
Sbjct: 114 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELD 171
Query: 997 RETVSKFNLKVLARD 1011
E + L V A D
Sbjct: 172 YEVTQAYQLTVNATD 186
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 622 ITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETN-GVIYLNKPIQSP 680
+ I E+ VG + ARD D N + + +S +F VE + GV++L +P+
Sbjct: 17 LLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRE 73
Query: 681 PGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFE 740
S T+E SD Q + ++ VN+ + DVND+ P F Y + E+TPV F
Sbjct: 74 TKSEFTVEFSVSD--HQGVITR-KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFI 130
Query: 741 LVAKDSDLGNNGFVSYSIIEGNGEDKFGI-FPDGFMYVRNSLDRETRDYYALTVLAEDHG 799
+ A D DLG G V YS + F I G + V LD E Y LTV A D
Sbjct: 131 VNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQD 188
Query: 800 K-YPRSSSVPVVIHIIDEND 818
K P S+ + I I D D
Sbjct: 189 KTRPLSTLANLAIIITDMQD 208
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 16/215 (7%)
Query: 717 PVFDMSSYETSLL--ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-G 773
P F ++T LL E TPV + +L+A+D D N + + + F + PD G
Sbjct: 6 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 62
Query: 774 FMYVRNSLDRETRDYYALTVLAEDH-GKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSV 832
+++R LDRET+ + + DH G R V I + D NDN P F N + +
Sbjct: 63 VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK----VNIQVGDVNDNAPTFHNQPYSVRI 118
Query: 833 MENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQT 892
EN P + + + ATD D+G + ++ F IDS G + ++ D E
Sbjct: 119 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYE----V 174
Query: 893 TGQNFISLEATVSDNGSPRLKDKVKVDVYITDQND 927
T +++ AT D P L + + ITD D
Sbjct: 175 TQAYQLTVNATDQDKTRP-LSTLANLAIIITDMQD 208
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 6/189 (3%)
Query: 527 LGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNL 586
+G V ++ R+ D D + + + + + F + TG + LDRE +S + +
Sbjct: 25 VGSSVTQLLARDMDN----DPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTV 80
Query: 587 VVSARSRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGV 646
S VNI + D+NDNAP F+ + IPEN VG I++ A D D G
Sbjct: 81 EFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGA 140
Query: 647 NSRIFYSLSSNPDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGK-QSLSSKHSV 705
+ YS P F I G++ + + + + + A+D K + LS+ ++
Sbjct: 141 GGSVLYSFQP-PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANL 199
Query: 706 NVYIQDVND 714
+ I D+ D
Sbjct: 200 AIIITDMQD 208
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 39/218 (17%)
Query: 348 PQFTQNVLNISLL--ENSAANTLVATLTASDHDQDSI------------------TGQLT 387
P FT + + LL E++ + V L A D D D + TG +
Sbjct: 6 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVW 65
Query: 388 VKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDT 447
++ LDRET +++ ++ DH T V + + DVNDN P F+ Y +IPE+T
Sbjct: 66 LRQPLDRETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENT 122
Query: 448 QVGVSIVQVSAYDLDCGKNAQVTYSIESGSE--AVDGGNRKATENAIVEIIKNSMVETLE 505
VG I V+A D D G V YS + S A+D IV +I+ L+
Sbjct: 123 PVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSA------RGIVTVIQE-----LD 171
Query: 506 FEHYNGYTFSI-LEDHDKMQENLGRDVGKIKIRNSDMQ 542
+E Y ++ D DK + + + I +DMQ
Sbjct: 172 YEVTQAYQLTVNATDQDKTRP--LSTLANLAIIITDMQ 207
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 249 IHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQW 308
I V DVND+ P F YS + E P G+ + + ATD D G + Y+F + +
Sbjct: 97 IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--F 154
Query: 309 FEINPTSGLITTKTRDGGPNPKWAYTQLKVSILDENDEKP 348
F I+ G++T ++ AY QL V+ D++ +P
Sbjct: 155 FAIDSARGIVTV-IQELDYEVTQAY-QLTVNATDQDKTRP 192
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 30 ETSYLYLQTTGKLDRETVDFYQLNISARD-GGTPTRYGYLQVNVTILDVNDNPPIFAHSV 88
+T ++L+ LDRET + + S D G TR +VN+ + DVNDN P F +
Sbjct: 60 DTGVVWLRQ--PLDRETKSEFTVEFSVSDHQGVITR----KVNIQVGDVNDNAPTFHNQ- 112
Query: 89 SDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITY 123
YSV + E+ GT + V ATD D G + Y
Sbjct: 113 -PYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 146
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 38/195 (19%)
Query: 269 VLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNE-HQWFEINPTSGLITTKT---RD 324
++SE P GS V + A D D N + + VSG E ++F + P +G++ + R+
Sbjct: 18 LISEDTPVGSSVTQLLARDMD---NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPLDRE 73
Query: 325 GGPNPKWAYT----------QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTA 374
++ ++ + + D ND P F ++ + EN+ T + + A
Sbjct: 74 TKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNA 133
Query: 375 SDHDQ-------------------DSITGQLTVKTKLDRETITDYELKVIAKDH-GTPPQ 414
+D D DS G +TV +LD E Y+L V A D T P
Sbjct: 134 TDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL 193
Query: 415 SSTATVFLFIEDVND 429
S+ A + + I D+ D
Sbjct: 194 STLANLAIIITDMQD 208
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 1044 ESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKL 1103
++ + + E+T V + + A D D N+ ++F + F ++P TG+++L + L
Sbjct: 14 DTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPL 70
Query: 1104 DYEEINSYVLNVTASD--GGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRE 1156
D E + + + + SD G R I V D NDN P+F N +I E
Sbjct: 71 DRETKSEFTVEFSVSDHQGVITR-----KVNIQVGDVNDNAPTFHNQPYSVRIPE 120
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 941 ISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV 1000
ISE +G+ V ++ D D N + + + F+++ TG + + + LDRET
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 1001 SKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLF 1060
S+F ++ D V++ + V I V D NDNAP F + + ENT V T +F
Sbjct: 77 SEFTVEFSVSDHQGVITRK------VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIF 130
Query: 1061 HFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDG 1120
ATD D+G VL+S + F +D GI+ + ++LDYE +Y L V A+D
Sbjct: 131 IVNATDPDLGAGGSVLYSFQPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Query: 1121 GTPR-LSTIFMFTINVEDC 1138
R LST+ I + D
Sbjct: 189 DKTRPLSTLANLAIIITDL 207
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 821 PEFSNSSF--VFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGD--FEIDSRNG 876
P F+N F + E+ P S V +L+A D D N L F + + F ++ G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTG 63
Query: 877 FIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTP 936
+ + DRE T F ++E +VSD+ + KV++ + D NDN+P F P
Sbjct: 64 VVWLRQPLDRE-----TKSEF-TVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQP 114
Query: 937 YKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLD 996
Y V+I E +GT +F V+ D D G G V Y + F+ID A G +T+ + LD
Sbjct: 115 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELD 172
Query: 997 RETVSKFNLKVLARD 1011
E + L V A D
Sbjct: 173 YEVTQAYQLTVNATD 187
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 16/212 (7%)
Query: 717 PVFDMSSYETSLL--ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-G 773
P F ++T LL E TPV + +L+A+D D N + + + F + PD G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTG 63
Query: 774 FMYVRNSLDRETRDYYALTVLAEDH-GKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSV 832
+++R LDRET+ + + DH G R V I + D NDN P F N + +
Sbjct: 64 VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK----VNIQVGDVNDNAPTFHNQPYSVRI 119
Query: 833 MENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQT 892
EN P + + + ATD D+G + ++ F IDS G + ++ D E
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYE----V 175
Query: 893 TGQNFISLEATVSDNGSPRLKDKVKVDVYITD 924
T +++ AT D P L + + ITD
Sbjct: 176 TQAYQLTVNATDQDKTRP-LSTLANLAIIITD 206
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 11/197 (5%)
Query: 622 ITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETN-GVIYLNKPIQSP 680
+ I E+ VG + ARD D N + + + +F VE + GV++L +P+
Sbjct: 18 LLISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 681 PGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFE 740
S T+E SD Q + ++ VN+ + DVND+ P F Y + E+TPV F
Sbjct: 75 TKSEFTVEFSVSD--HQGVITR-KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFI 131
Query: 741 LVAKDSDLGNNGFVSYSIIEGNGEDKFGI-FPDGFMYVRNSLDRETRDYYALTVLAEDHG 799
+ A D DLG G V YS + F I G + V LD E Y LTV A D
Sbjct: 132 VNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQD 189
Query: 800 K-YPRSSSVPVVIHIID 815
K P S+ + I I D
Sbjct: 190 KTRPLSTLANLAIIITD 206
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 552 IVYGDPKKK----FEINDRTGEIITAAKLDREEQSIYNLVVSARSRLSYGKTFVNITLLD 607
+V+G P ++ F + TG + LDRE +S + + S VNI + D
Sbjct: 43 LVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGD 102
Query: 608 LNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVET 667
+NDNAP F+ + IPEN VG I++ A D D G + YS P F I
Sbjct: 103 VNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQP-PSPFFAIDSA 161
Query: 668 NGVIYLNKPIQSPPGSTLTIEIVASDSGK-QSLSSKHSVNVYIQDV 712
G++ + + + + + A+D K + LS+ ++ + I D+
Sbjct: 162 RGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 37/200 (18%)
Query: 348 PQFTQNVLNISLL--ENSAANTLVATLTASDHDQDSI------------------TGQLT 387
P FT + + LL E++ + V L A D D D + TG +
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVPGEEASRFFAVEPDTGVVW 66
Query: 388 VKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDT 447
++ LDRET +++ ++ DH T V + + DVNDN P F+ Y +IPE+T
Sbjct: 67 LRQPLDRETKSEFTVEFSVSDHQ---GVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENT 123
Query: 448 QVGVSIVQVSAYDLDCGKNAQVTYSIESGSE--AVDGGNRKATENAIVEIIKNSMVETLE 505
VG I V+A D D G V YS + S A+D IV +I+ L+
Sbjct: 124 PVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSA------RGIVTVIQE-----LD 172
Query: 506 FEHYNGYTFSI-LEDHDKMQ 524
+E Y ++ D DK +
Sbjct: 173 YEVTQAYQLTVNATDQDKTR 192
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 249 IHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQW 308
I V DVND+ P F YS + E P G+ + + ATD D G + Y+F + +
Sbjct: 98 IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--F 155
Query: 309 FEINPTSGLIT 319
F I+ G++T
Sbjct: 156 FAIDSARGIVT 166
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 30 ETSYLYLQTTGKLDRETVDFYQLNISARD-GGTPTRYGYLQVNVTILDVNDNPPIFAHSV 88
+T ++L+ LDRET + + S D G TR +VN+ + DVNDN P F +
Sbjct: 61 DTGVVWLRQ--PLDRETKSEFTVEFSVSDHQGVITR----KVNIQVGDVNDNAPTFHNQ- 113
Query: 89 SDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITY 123
YSV + E+ GT + V ATD D G + Y
Sbjct: 114 -PYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 1044 ESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKL 1103
++ + + E+T V + + A D D N+ ++F + F ++P TG+++L + L
Sbjct: 15 DTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPL 71
Query: 1104 DYEEINSYVLNVTASD--GGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRE 1156
D E + + + + SD G R I V D NDN P+F N +I E
Sbjct: 72 DRETKSEFTVEFSVSDHQGVITR-----KVNIQVGDVNDNAPTFHNQPYSVRIPE 121
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 36/192 (18%)
Query: 269 VLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT---RDG 325
++SE P GS V + A D D N + + ++F + P +G++ + R+
Sbjct: 19 LISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRET 75
Query: 326 GPNPKWAYT----------QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTAS 375
++ ++ + + D ND P F ++ + EN+ T + + A+
Sbjct: 76 KSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 135
Query: 376 DHDQ-------------------DSITGQLTVKTKLDRETITDYELKVIAKDH-GTPPQS 415
D D DS G +TV +LD E Y+L V A D T P S
Sbjct: 136 DPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLS 195
Query: 416 STATVFLFIEDV 427
+ A + + I D+
Sbjct: 196 TLANLAIIITDL 207
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 941 ISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV 1000
ISE +G+ V ++ D D N + + + F+++ TG + + + LDRET
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 1001 SKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLF 1060
S+F ++ D V++ + V I V D NDNAP F + + ENT V T +F
Sbjct: 77 SEFTVEFSVSDHQGVITRK------VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIF 130
Query: 1061 HFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDG 1120
ATD D+G VL+S + F +D GI+ + ++LDYE +Y L V A+D
Sbjct: 131 IVNATDPDLGAGGSVLYSFQPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Query: 1121 GTPR-LSTIFMFTINVEDC 1138
R LST+ I + D
Sbjct: 189 DKTRPLSTLANLAIIITDL 207
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 821 PEFSNSSF--VFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGD--FEIDSRNG 876
P F+N F + E+ P S V +L+A D D N L F +S + F ++ G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 63
Query: 877 FIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTP 936
+ + DRE T F ++E +VSD+ + KV++ + D NDN+P F P
Sbjct: 64 VVWLRQPLDRE-----TKSEF-TVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQP 114
Query: 937 YKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLD 996
Y V+I E +GT +F V+ D D G G V Y + F+ID A G +T+ + LD
Sbjct: 115 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELD 172
Query: 997 RETVSKFNLKVLARD 1011
E + L V A D
Sbjct: 173 YEVTQAYQLTVNATD 187
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 91/197 (46%), Gaps = 11/197 (5%)
Query: 622 ITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETN-GVIYLNKPIQSP 680
+ I E+ VG + ARD D N + + +S +F VE + GV++L +P+
Sbjct: 18 LLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 681 PGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFE 740
S T+E SD Q + ++ VN+ + DVND+ P F Y + E+TPV F
Sbjct: 75 TKSEFTVEFSVSD--HQGVITRK-VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFI 131
Query: 741 LVAKDSDLGNNGFVSYSIIEGNGEDKFGI-FPDGFMYVRNSLDRETRDYYALTVLAEDHG 799
+ A D DLG G V YS + F I G + V LD E Y LTV A D
Sbjct: 132 VNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQD 189
Query: 800 K-YPRSSSVPVVIHIID 815
K P S+ + I I D
Sbjct: 190 KTRPLSTLANLAIIITD 206
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 16/212 (7%)
Query: 717 PVFDMSSYETSLL--ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-G 773
P F ++T LL E TPV + +L+A+D D N + + + F + PD G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 63
Query: 774 FMYVRNSLDRETRDYYALTVLAEDH-GKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSV 832
+++R LDRET+ + + DH G R V I + D NDN P F N + +
Sbjct: 64 VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK----VNIQVGDVNDNAPTFHNQPYSVRI 119
Query: 833 MENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQT 892
EN P + + + ATD D+G + ++ F IDS G + ++ D E
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYE----V 175
Query: 893 TGQNFISLEATVSDNGSPRLKDKVKVDVYITD 924
T +++ AT D P L + + ITD
Sbjct: 176 TQAYQLTVNATDQDKTRP-LSTLANLAIIITD 206
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 6/187 (3%)
Query: 527 LGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNL 586
+G V ++ R+ D D + + + + + F + TG + LDRE +S + +
Sbjct: 26 VGSSVTQLLARDMDN----DPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTV 81
Query: 587 VVSARSRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGV 646
S VNI + D+NDNAP F+ + IPEN VG I++ A D D G
Sbjct: 82 EFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGA 141
Query: 647 NSRIFYSLSSNPDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGK-QSLSSKHSV 705
+ YS P F I G++ + + + + + A+D K + LS+ ++
Sbjct: 142 GGSVLYSFQP-PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANL 200
Query: 706 NVYIQDV 712
+ I D+
Sbjct: 201 AIIITDL 207
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 37/200 (18%)
Query: 348 PQFTQNVLNISLL--ENSAANTLVATLTASDHDQDSI------------------TGQLT 387
P FT + + LL E++ + V L A D D D + TG +
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVW 66
Query: 388 VKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDT 447
++ LDRET +++ ++ DH T V + + DVNDN P F+ Y +IPE+T
Sbjct: 67 LRQPLDRETKSEFTVEFSVSDHQ---GVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENT 123
Query: 448 QVGVSIVQVSAYDLDCGKNAQVTYSIESGSE--AVDGGNRKATENAIVEIIKNSMVETLE 505
VG I V+A D D G V YS + S A+D IV +I+ L+
Sbjct: 124 PVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSA------RGIVTVIQE-----LD 172
Query: 506 FEHYNGYTFSI-LEDHDKMQ 524
+E Y ++ D DK +
Sbjct: 173 YEVTQAYQLTVNATDQDKTR 192
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 249 IHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQW 308
I V DVND+ P F YS + E P G+ + + ATD D G + Y+F + +
Sbjct: 98 IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--F 155
Query: 309 FEINPTSGLITTKTRDGGPNPKWAYTQLKVSILDENDEKP 348
F I+ G++T ++ AY QL V+ D++ +P
Sbjct: 156 FAIDSARGIVTV-IQELDYEVTQAY-QLTVNATDQDKTRP 193
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 30 ETSYLYLQTTGKLDRETVDFYQLNISARD-GGTPTRYGYLQVNVTILDVNDNPPIFAHSV 88
+T ++L+ LDRET + + S D G TR +VN+ + DVNDN P F +
Sbjct: 61 DTGVVWLRQ--PLDRETKSEFTVEFSVSDHQGVITR----KVNIQVGDVNDNAPTFHNQ- 113
Query: 89 SDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITY 123
YSV + E+ GT + V ATD D G + Y
Sbjct: 114 -PYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 1044 ESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKL 1103
++ + + E+T V + + A D D N+ ++F + F ++P TG+++L + L
Sbjct: 15 DTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPL 71
Query: 1104 DYEEINSYVLNVTASD--GGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRE 1156
D E + + + + SD G R I V D NDN P+F N +I E
Sbjct: 72 DRETKSEFTVEFSVSDHQGVITR-----KVNIQVGDVNDNAPTFHNQPYSVRIPE 121
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 38/193 (19%)
Query: 269 VLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNE-HQWFEINPTSGLITTKT---RD 324
++SE P GS V + A D D N + + VSG E ++F + P +G++ + R+
Sbjct: 19 LISEDTPVGSSVTQLLARDMD---NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 325 GGPNPKWAYT----------QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTA 374
++ ++ + + D ND P F ++ + EN+ T + + A
Sbjct: 75 TKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNA 134
Query: 375 SDHDQ-------------------DSITGQLTVKTKLDRETITDYELKVIAKDH-GTPPQ 414
+D D DS G +TV +LD E Y+L V A D T P
Sbjct: 135 TDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL 194
Query: 415 SSTATVFLFIEDV 427
S+ A + + I D+
Sbjct: 195 STLANLAIIITDL 207
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 17/179 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 50 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 103
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 104 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 163
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNA 1037
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D NDNA
Sbjct: 164 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKDINDNA 219
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 35 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 91
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 92 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 151
Query: 1080 GSGN----KRDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 152 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 211
Query: 1135 VEDCNDN 1141
V+D NDN
Sbjct: 212 VKDINDN 218
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 35 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 93
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 94 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 153
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVK 917
K F ++ G I + S DRE+ T L +D L K
Sbjct: 154 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYT------LVVQAADLQGEGLSTTAK 207
Query: 918 VDVYITDQNDNS 929
+ + D NDN+
Sbjct: 208 AVITVKDINDNA 219
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 29/125 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 94 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 153
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 154 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 213
Query: 426 DVNDN 430
D+NDN
Sbjct: 214 DINDN 218
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 48 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 107
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 108 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 167
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDH 715
GVI L + T T+ + A+D + LS+ + ++D+ND+
Sbjct: 168 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDN 218
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 60 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 119
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 120 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 151
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 18/194 (9%)
Query: 640 RDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
RD+++ ++FYS++ D+ F I G + + +P+ + + A S
Sbjct: 29 RDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS 84
Query: 695 GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF- 753
+++ + + + D ND+ P F +E S+ E ++ A D+D N +
Sbjct: 85 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 144
Query: 754 --VSYSIIEGNGE----DKFGIFPD-GFMYVRNS-LDRETRDYYALTVLAEDHGKYPRSS 805
++Y+I+ + E + F + D G + V S LDRE+ Y L V A D S+
Sbjct: 145 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLST 204
Query: 806 SVPVVIHIIDENDN 819
+ VI + D NDN
Sbjct: 205 TAKAVITVKDINDN 218
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 68 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 127
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 128 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 177
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQ 442
TG L V LDRE I Y L A + + + D NDN P F +
Sbjct: 58 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 117
Query: 443 IPEDTQVGVSIVQVSAYDLD---CGKNAQVTYSIES 475
+ E G S+++VSA D D NA + Y+I S
Sbjct: 118 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 153
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 34 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 93
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 94 EIVITVTDQNDNRPEF 109
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 941 ISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV 1000
ISE +G+ V ++ D D N + + + F+++ TG + + + LDRET
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 1001 SKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLF 1060
S+F ++ D V++ + V I V NDNAP F + + ENT V T +F
Sbjct: 77 SEFTVEFSVSDHQGVITRK------VNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIF 130
Query: 1061 HFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDG 1120
ATD D+G VL+S + F +D GI+ + ++LDYE +Y L V A+D
Sbjct: 131 IVNATDPDLGAGGSVLYSFQPPSP--FFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Query: 1121 GTPR-LSTIFMFTINVEDC 1138
R LST+ I + D
Sbjct: 189 DKTRPLSTLANLAIIITDL 207
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 821 PEFSNSSF--VFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGD--FEIDSRNG 876
P F+N F + E+ P S V +L+A D D N L F +S + F ++ G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 63
Query: 877 FIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTP 936
+ + DRE T F ++E +VSD+ + KV++ + NDN+P F P
Sbjct: 64 VVWLRQPLDRE-----TKSEF-TVEFSVSDHQGVITR---KVNIQVGGVNDNAPTFHNQP 114
Query: 937 YKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLD 996
Y V+I E +GT +F V+ D D G G V Y + F+ID A G +T+ + LD
Sbjct: 115 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELD 172
Query: 997 RETVSKFNLKVLARD 1011
E + L V A D
Sbjct: 173 YEVTQAYQLTVNATD 187
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 11/197 (5%)
Query: 622 ITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETN-GVIYLNKPIQSP 680
+ I E+ VG + ARD D N + + +S +F VE + GV++L +P+
Sbjct: 18 LLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 681 PGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFE 740
S T+E SD Q + ++ VN+ + VND+ P F Y + E+TPV F
Sbjct: 75 TKSEFTVEFSVSD--HQGVITRK-VNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFI 131
Query: 741 LVAKDSDLGNNGFVSYSIIEGNGEDKFGI-FPDGFMYVRNSLDRETRDYYALTVLAEDHG 799
+ A D DLG G V YS + F I G + V LD E Y LTV A D
Sbjct: 132 VNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQD 189
Query: 800 K-YPRSSSVPVVIHIID 815
K P S+ + I I D
Sbjct: 190 KTRPLSTLANLAIIITD 206
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 16/212 (7%)
Query: 717 PVFDMSSYETSLL--ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-G 773
P F ++T LL E TPV + +L+A+D D N + + + F + PD G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 63
Query: 774 FMYVRNSLDRETRDYYALTVLAEDH-GKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSV 832
+++R LDRET+ + + DH G R V I + NDN P F N + +
Sbjct: 64 VVWLRQPLDRETKSEFTVEFSVSDHQGVITRK----VNIQVGGVNDNAPTFHNQPYSVRI 119
Query: 833 MENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQT 892
EN P + + + ATD D+G + ++ F IDS G + ++ D E
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYE----V 175
Query: 893 TGQNFISLEATVSDNGSPRLKDKVKVDVYITD 924
T +++ AT D P L + + ITD
Sbjct: 176 TQAYQLTVNATDQDKTRP-LSTLANLAIIITD 206
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 6/187 (3%)
Query: 527 LGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNL 586
+G V ++ R+ D D + + + + + F + TG + LDRE +S + +
Sbjct: 26 VGSSVTQLLARDMDN----DPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTV 81
Query: 587 VVSARSRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGV 646
S VNI + +NDNAP F+ + IPEN VG I++ A D D G
Sbjct: 82 EFSVSDHQGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGA 141
Query: 647 NSRIFYSLSSNPDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGK-QSLSSKHSV 705
+ YS P F I G++ + + + + + A+D K + LS+ ++
Sbjct: 142 GGSVLYSFQP-PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANL 200
Query: 706 NVYIQDV 712
+ I D+
Sbjct: 201 AIIITDL 207
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 37/200 (18%)
Query: 348 PQFTQNVLNISLL--ENSAANTLVATLTASDHDQDSI------------------TGQLT 387
P FT + + LL E++ + V L A D D D + TG +
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVW 66
Query: 388 VKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDT 447
++ LDRET +++ ++ DH T V + + VNDN P F+ Y +IPE+T
Sbjct: 67 LRQPLDRETKSEFTVEFSVSDHQ---GVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENT 123
Query: 448 QVGVSIVQVSAYDLDCGKNAQVTYSIESGSE--AVDGGNRKATENAIVEIIKNSMVETLE 505
VG I V+A D D G V YS + S A+D IV +I+ L+
Sbjct: 124 PVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSA------RGIVTVIQE-----LD 172
Query: 506 FEHYNGYTFSI-LEDHDKMQ 524
+E Y ++ D DK +
Sbjct: 173 YEVTQAYQLTVNATDQDKTR 192
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 249 IHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQW 308
I V VND+ P F YS + E P G+ + + ATD D G + Y+F + +
Sbjct: 98 IQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--F 155
Query: 309 FEINPTSGLIT 319
F I+ G++T
Sbjct: 156 FAIDSARGIVT 166
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 30 ETSYLYLQTTGKLDRETVDFYQLNISARD-GGTPTRYGYLQVNVTILDVNDNPPIFAHSV 88
+T ++L+ LDRET + + S D G TR +VN+ + VNDN P F +
Sbjct: 61 DTGVVWLRQ--PLDRETKSEFTVEFSVSDHQGVITR----KVNIQVGGVNDNAPTFHNQ- 113
Query: 89 SDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITY 123
YSV + E+ GT + V ATD D G + Y
Sbjct: 114 -PYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 38/193 (19%)
Query: 269 VLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNE-HQWFEINPTSGLITTKT---RD 324
++SE P GS V + A D D N + + VSG E ++F + P +G++ + R+
Sbjct: 19 LISEDTPVGSSVTQLLARDMD---NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 325 GGPNPKWAYT----------QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTA 374
++ ++ + + ND P F ++ + EN+ T + + A
Sbjct: 75 TKSEFTVEFSVSDHQGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNA 134
Query: 375 SDHDQ-------------------DSITGQLTVKTKLDRETITDYELKVIAKDH-GTPPQ 414
+D D DS G +TV +LD E Y+L V A D T P
Sbjct: 135 TDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL 194
Query: 415 SSTATVFLFIEDV 427
S+ A + + I D+
Sbjct: 195 STLANLAIIITDL 207
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 154/337 (45%), Gaps = 26/337 (7%)
Query: 809 VVIHIIDENDNKPEFSNSSFVFS--VMENLPPDSFVGKLIATDKDVGRNAELSFALSNAK 866
V+I + D ND P F N V N PP++ V L A D D N
Sbjct: 97 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTG 156
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGS---PRLKDKVKVDVYIT 923
G FE+D R+G ++T + +L Q + + ++A NG R + + + I
Sbjct: 157 GRFEVDERSGVVRTRGT----DLFQLDMEYVLYVKAE-DQNGKVDDRRFQSTPEERLSIV 211
Query: 924 DQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIIS-GNDDEHFSI 982
+PQF Y+ +I E + + ++ A + ++ Y + + G F+I
Sbjct: 212 G-GKRAPQFYMPSYEAEIPENQKKDSDII---SIKAKSFADREIRYTLKAQGQGAGTFNI 267
Query: 983 DEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVK 1042
+G + ++K LD E + + ++ L AT S S++ +TI V D NDNAP F
Sbjct: 268 GPTSGIVKLAKELDFEDLRQPHVYSLIV-TATEDSGGFSTSVDLTIRVTDVNDNAPKFEL 326
Query: 1043 TESKI-SVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHK 1101
+ + +V E+ + T + +A DSD G N E+ + + D F +D GI+ +K
Sbjct: 327 PDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD----DHFAVDS-NGIIVNNK 381
Query: 1102 KLDYEEINSYV-LNVTASDGGTPR---LSTIFMFTIN 1134
+LD + N+Y VTA D G P ++T+ ++T N
Sbjct: 382 QLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 122/284 (42%), Gaps = 26/284 (9%)
Query: 875 NGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLR 934
NG ++ + +D E L +F + + N + D +V + + D ND P F+
Sbjct: 54 NGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFIN 113
Query: 935 TPYKVQ--ISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITIS 992
P +Q + A T VF + D D N ++Y I+ F +DE +G +
Sbjct: 114 RPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTR 171
Query: 993 KL----LDRETVSKFNLKVLARDA-ATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKI 1047
LD E V L V A D V + ST + ++ AP F +
Sbjct: 172 GTDLFQLDMEYV----LYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEA 226
Query: 1048 SVYENTTVNTQLFHFQATDSDIGVNNEVLFSI-GSGNKRDTFHMDPVTGILYLHKKLDYE 1106
+ EN ++ + +A + E+ +++ G TF++ P +GI+ L K+LD+E
Sbjct: 227 EIPENQKKDSDIISIKAKSF---ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFE 283
Query: 1107 EINS---YVLNVTASD--GGTPRLSTIFMFTINVEDCNDNPPSF 1145
++ Y L VTA++ GG ST TI V D NDN P F
Sbjct: 284 DLRQPHVYSLIVTATEDSGG---FSTSVDLTIRVTDVNDNAPKF 324
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 119/283 (42%), Gaps = 31/283 (10%)
Query: 548 IKYAIVYGDPKKKFEINDRTGEIITAA----KLDREEQSIYNLVVSARSR------LSYG 597
I Y IV +FE+++R+G + T +LD E Y L V A + +
Sbjct: 146 IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKVDDRRFQ 201
Query: 598 KTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSN 657
T + AP F E IPEN +I +A+ S + I Y+L +
Sbjct: 202 STPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAK---SFADREIRYTLKAQ 258
Query: 658 PDDQ--FKIVETNGVIYLNKPIQ----SPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
F I T+G++ L K + P I DSG S+ + + + D
Sbjct: 259 GQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG--GFSTSVDLTIRVTD 316
Query: 712 VNDHTPVFDMSSYET-SLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIF 770
VND+ P F++ Y+ ++ E P+ + A DSD G+N + Y + +D F +
Sbjct: 317 VNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV----SDDHFAVD 372
Query: 771 PDGFMYVRNSLDRETRD-YYALTVLAEDHGKYPRSSSVPVVIH 812
+G + LD + + YY V A+D G+ P+S V ++
Sbjct: 373 SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVY 415
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 113/281 (40%), Gaps = 51/281 (18%)
Query: 247 LIIHVNDVNDHEPVF--EKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGN 304
+II V DVND P F AV+ AP + V + A D DT N I Y V
Sbjct: 97 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDR 154
Query: 305 EHQWFEINPTSGLITTKTRD------------------GGPNPK--WAYTQLKVSILDEN 344
FE++ SG++ T+ D G + + + + ++SI+
Sbjct: 155 TGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-G 213
Query: 345 DEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDSI-------------------TGQ 385
PQF + EN ++ + ++ A I +G
Sbjct: 214 KRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGI 273
Query: 386 LTVKTKLDRETITD---YELKVIA-KDHGTPPQSSTATVFLFIEDVNDNNPVF-YPSQYF 440
+ + +LD E + Y L V A +D G S++ + + + DVNDN P F P
Sbjct: 274 VKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVDLTIRVTDVNDNAPKFELPDYQA 331
Query: 441 KQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSEAVD 481
+ ED +G SI++V A D D G NA++ Y + AVD
Sbjct: 332 HNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDHFAVD 372
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 68 LQVNVTILDVNDNPPIFAHSVSDYSV-SLNESVLPGTKVLQVIATDNDQGDNAKITYYLS 126
+ + + + DVNDN P F + DY +++E + GT +L+V A D+D G NA+I Y +S
Sbjct: 308 VDLTIRVTDVNDNAPKF--ELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVS 365
Query: 127 ETERKFTN-----CQQQRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTV 170
+ + +Q + F V A+D G P + G V V
Sbjct: 366 DDHFAVDSNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRV 414
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 227 YNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAV-LSELAPAGSYVAGITA 285
Y+L + AT+ T+ L I V DVND+ P FE +Y A + E P G+ + + A
Sbjct: 291 YSLIVTATEDSGGFSTSVD-LTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKA 349
Query: 286 TDEDTGVNAQIFY 298
D D+G NA+I Y
Sbjct: 350 MDSDSGSNAEIEY 362
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 74/204 (36%), Gaps = 44/204 (21%)
Query: 259 PVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAF-VSGNEHQWFEINPTSG- 316
P F Y A + E S + I A + + +I Y G F I PTSG
Sbjct: 217 PQFYMPSYEAEIPENQKKDSDIISIKAK---SFADREIRYTLKAQGQGAGTFNIGPTSGI 273
Query: 317 -------------------LITTKTRDGGPNPKWAYTQLKVSILDENDEKPQF------T 351
LI T T D G L + + D ND P+F
Sbjct: 274 VKLAKELDFEDLRQPHVYSLIVTATEDSGGFS--TSVDLTIRVTDVNDNAPKFELPDYQA 331
Query: 352 QNV-----LNISLLE------NSAANTLVATLTASDHDQDSITGQLTVKTKLDRETITDY 400
NV L S+L +S +N + L + DH G + +LD + Y
Sbjct: 332 HNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDHFAVDSNGIIVNNKQLDADNNNAY 391
Query: 401 -ELKVIAKDHGTPPQSSTATVFLF 423
E V AKD G PP+S ATV ++
Sbjct: 392 YEFIVTAKDKGEPPKSGVATVRVY 415
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 51 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 104
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 105 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 164
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D
Sbjct: 165 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKD 215
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 36 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 92
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 93 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 152
Query: 1080 GSGN----KRDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 153 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 212
Query: 1135 VED 1137
V+D
Sbjct: 213 VKD 215
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 36 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDREN 888
K F ++ G I + S DRE+
Sbjct: 155 QDPELPHKNMFTVNRDTGVISVLTSGLDRES 185
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 61 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 120
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 121 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 152
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 49 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 168
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
GVI L + T T+ + A+D + LS+ + ++D
Sbjct: 169 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 215
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 69 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 128
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 129 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 178
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 640 RDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
RD+++ ++FYS++ D+ F I G + + +P+ + + A S
Sbjct: 30 RDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS 85
Query: 695 GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF- 753
+++ + + + D ND+ P F +E S+ E ++ A D+D N +
Sbjct: 86 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 145
Query: 754 --VSYSIIEGNGE----DKFGIFPD-GFMYVRNS-LDRETRDYYALTVLAEDHGKYPRSS 805
++Y+I+ + E + F + D G + V S LDRE+ Y L V A D S+
Sbjct: 146 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLST 205
Query: 806 SVPVVIHIID 815
+ VI + D
Sbjct: 206 TAKAVITVKD 215
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 154
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 155 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 214
Query: 426 D 426
D
Sbjct: 215 D 215
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 345 DEKPQFTQNVLNISLLENSAANTLV-ATLTASDHDQDSI--------TGQLTVKTKLDRE 395
+EK +F +N++ I N T V ++T D+ + TG L V LDRE
Sbjct: 14 NEKGEFPKNLVQIK--SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE 71
Query: 396 TITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQ 455
I Y L A + + + D NDN P F + + E G S+++
Sbjct: 72 AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 131
Query: 456 VSAYDLD---CGKNAQVTYSIES 475
VSA D D NA + Y+I S
Sbjct: 132 VSATDADDDVNTYNAAIAYTIVS 154
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 95 EIVITVTDQNDNRPEF 110
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 102
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D
Sbjct: 163 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKD 213
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 90
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 1080 GSGN----KRDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 210
Query: 1135 VED 1137
V+D
Sbjct: 211 VKD 213
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 34 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDREN 888
K F ++ G I + S DRE+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 119 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
GVI L + T T+ + A+D + LS+ + ++D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 23/217 (10%)
Query: 613 PIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQ-----FKIVET 667
PI + +E P+N + + RD+++ ++FYS++ D+ F I
Sbjct: 6 PISCPENEEGEFPKNL-----VQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERE 56
Query: 668 NGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETS 727
G + + +P+ + + A S +++ + + + D ND+ P F +E S
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 728 LLESTPVNNRFFELVAKDSDLGNNGF---VSYSIIEGNGE----DKFGIFPD-GFMYVRN 779
+ E ++ A D+D N + ++Y+I+ + E + F + D G + V
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 780 S-LDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIID 815
S LDRE+ Y L V A D S++ VI + D
Sbjct: 177 SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 426 D 426
D
Sbjct: 213 D 213
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQ 442
TG L V LDRE I Y L A + + + D NDN P F +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 443 IPEDTQVGVSIVQVSAYDLD---CGKNAQVTYSIES 475
+ E G S+++VSA D D NA + Y+I S
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 93 EIVITVTDQNDNRPEF 108
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 102
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D
Sbjct: 163 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKD 213
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 90
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 1080 GSGN----KRDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 210
Query: 1135 VED 1137
V+D
Sbjct: 211 VKD 213
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 34 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDREN 888
K F ++ G I + S DRE+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 119 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
GVI L + T T+ + A+D + LS+ + ++D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 640 RDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
RD+++ ++FYS++ D+ F I G + + +P+ + + A S
Sbjct: 28 RDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS 83
Query: 695 GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF- 753
+++ + + + D ND+ P F +E S+ E ++ A D+D N +
Sbjct: 84 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 143
Query: 754 --VSYSIIEGNGE----DKFGIFPD-GFMYVRNS-LDRETRDYYALTVLAEDHGKYPRSS 805
++Y+I+ + E + F + D G + V S LDRE+ Y L V A D S+
Sbjct: 144 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLST 203
Query: 806 SVPVVIHIID 815
+ VI + D
Sbjct: 204 TAKAVITVKD 213
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 426 D 426
D
Sbjct: 213 D 213
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 345 DEKPQFTQNVLNISLLENSAANTLV-ATLTASDHDQDSI--------TGQLTVKTKLDRE 395
+EK +F +N++ I N T V ++T D+ + TG L V LDRE
Sbjct: 12 NEKGEFPKNLVQIK--SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE 69
Query: 396 TITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQ 455
I Y L A + + + D NDN P F + + E G S+++
Sbjct: 70 AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
Query: 456 VSAYDLD---CGKNAQVTYSIES 475
VSA D D NA + Y+I S
Sbjct: 130 VSATDADDDVNTYNAAIAYTIVS 152
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 93 EIVITVTDQNDNRPEF 108
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 48 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 101
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 102 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 161
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D
Sbjct: 162 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKD 212
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 33 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 89
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 90 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 149
Query: 1080 GSGN----KRDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 150 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 209
Query: 1135 VED 1137
V+D
Sbjct: 210 VKD 212
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 33 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 91
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 92 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 151
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDREN 888
K F ++ G I + S DRE+
Sbjct: 152 QDPELPHKNMFTVNRDTGVISVLTSGLDRES 182
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 58 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 117
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 118 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 149
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 46 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 105
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 106 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 165
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
GVI L + T T+ + A+D + LS+ + ++D
Sbjct: 166 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 212
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 66 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 125
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 126 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 175
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 640 RDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
RD+++ ++FYS++ D+ F I G + + +P+ + + A S
Sbjct: 27 RDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS 82
Query: 695 GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF- 753
+++ + + + D ND+ P F +E S+ E ++ A D+D N +
Sbjct: 83 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 142
Query: 754 --VSYSIIEGNGE----DKFGIFPD-GFMYVRNS-LDRETRDYYALTVLAEDHGKYPRSS 805
++Y+I+ + E + F + D G + V S LDRE+ Y L V A D S+
Sbjct: 143 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLST 202
Query: 806 SVPVVIHIID 815
+ VI + D
Sbjct: 203 TAKAVITVKD 212
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 92 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 151
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 152 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 211
Query: 426 D 426
D
Sbjct: 212 D 212
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 345 DEKPQFTQNVLNISLLENSAANTLV-ATLTASDHDQDSI--------TGQLTVKTKLDRE 395
+EK +F +N++ I N T V ++T D+ + TG L V LDRE
Sbjct: 11 NEKGEFPKNLVQIK--SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE 68
Query: 396 TITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQ 455
I Y L A + + + D NDN P F + + E G S+++
Sbjct: 69 AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 128
Query: 456 VSAYDLD---CGKNAQVTYSIES 475
VSA D D NA + Y+I S
Sbjct: 129 VSATDADDDVNTYNAAIAYTIVS 151
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 32 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 91
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 92 EIVITVTDQNDNRPEF 107
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 102
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D
Sbjct: 163 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKD 213
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 90
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 1080 GSGN----KRDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 210
Query: 1135 VED 1137
V+D
Sbjct: 211 VKD 213
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 34 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDREN 888
K F ++ G I + S DRE+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 119 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
GVI L + T T+ + A+D + LS+ + ++D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 23/217 (10%)
Query: 613 PIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQ-----FKIVET 667
PI + +E P+N + + RD+++ ++FYS++ D+ F I
Sbjct: 6 PISCPENEEGEFPKNL-----VQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERE 56
Query: 668 NGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETS 727
G + + +P+ + + A S +++ + + + D ND+ P F +E S
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 728 LLESTPVNNRFFELVAKDSDLGNNGF---VSYSIIEGNGE----DKFGIFPD-GFMYVRN 779
+ E ++ A D+D N + ++Y+I+ + E + F + D G + V
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 780 S-LDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIID 815
S LDRE+ Y L V A D S++ VI + D
Sbjct: 177 SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 426 D 426
D
Sbjct: 213 D 213
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQ 442
TG L V LDRE I Y L A + + + D NDN P F +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 443 IPEDTQVGVSIVQVSAYDLD---CGKNAQVTYSIES 475
+ E G S+++VSA D D NA + Y+I S
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 93 EIVITVTDQNDNRPEF 108
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 102
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D
Sbjct: 163 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKD 213
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 90
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 1080 GSGN----KRDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 210
Query: 1135 VED 1137
V+D
Sbjct: 211 VKD 213
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 34 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDREN 888
K F ++ G I + S DRE+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 119 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
GVI L + T T+ + A+D + LS+ + ++D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 640 RDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
RD+++ ++FYS++ D+ F I G + + +P+ + + A S
Sbjct: 28 RDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS 83
Query: 695 GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF- 753
+++ + + + D ND+ P F +E S+ E ++ A D+D N +
Sbjct: 84 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 143
Query: 754 --VSYSIIEGNGE----DKFGIFPD-GFMYVRNS-LDRETRDYYALTVLAEDHGKYPRSS 805
++Y+I+ + E + F + D G + V S LDRE+ Y L V A D S+
Sbjct: 144 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLST 203
Query: 806 SVPVVIHIID 815
+ VI + D
Sbjct: 204 TAKAVITVKD 213
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 426 D 426
D
Sbjct: 213 D 213
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 345 DEKPQFTQNVLNISLLENSAANTLV-ATLTASDHDQDSI--------TGQLTVKTKLDRE 395
+EK +F +N++ I N T V ++T D+ + TG L V LDRE
Sbjct: 12 NEKGEFPKNLVQIK--SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE 69
Query: 396 TITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQ 455
I Y L A + + + D NDN P F + + E G S+++
Sbjct: 70 AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
Query: 456 VSAYDLD---CGKNAQVTYSIES 475
VSA D D NA + Y+I S
Sbjct: 130 VSATDADDDVNTYNAAIAYTIVS 152
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 93 EIVITVTDQNDNRPEF 108
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 102
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D
Sbjct: 163 FTVNRDTGVISVDTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKD 213
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 90
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 1080 GSGN----KRDTFHMDPVTGILYLHKK-LDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ + LD E +Y L V A+D LST I
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 210
Query: 1135 VED 1137
V+D
Sbjct: 211 VKD 213
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 34 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNA-ELSFALSNAK 866
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D N + A +
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 867 GDFEIDSRNGF 877
D E+ +N F
Sbjct: 153 QDPELPHKNMF 163
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 119 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVDT 176
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 666 ETNGVIYLNKP---IQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
GVI ++ +S P TL ++ A+D + LS+ + ++D
Sbjct: 167 RDTGVISVDTSGLDRESYPTYTLVVQ--AADLQGEGLSTTAKAVITVKD 213
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 426 D 426
D
Sbjct: 213 D 213
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 640 RDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
RD+++ ++FYS++ D+ F I G + + +P+ + + A S
Sbjct: 28 RDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS 83
Query: 695 GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF- 753
+++ + + + D ND+ P F +E S+ E ++ A D+D N +
Sbjct: 84 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 143
Query: 754 --VSYSIIEGNGE----DKFGIFPD-GFMYVRNS-LDRETRDYYALTVLAEDHGKYPRSS 805
++Y+I+ + E + F + D G + V S LDRE+ Y L V A D S+
Sbjct: 144 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLST 203
Query: 806 SVPVVIHIID 815
+ VI + D
Sbjct: 204 TAKAVITVKD 213
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 345 DEKPQFTQNVLNISLLENSAANTLV-ATLTASDHDQDSI--------TGQLTVKTKLDRE 395
+EK +F +N++ I N T V ++T D+ + TG L V LDRE
Sbjct: 12 NEKGEFPKNLVQIK--SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE 69
Query: 396 TITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQ 455
I Y L A + + + D NDN P F + + E G S+++
Sbjct: 70 AIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
Query: 456 VSAYDLD---CGKNAQVTYSIES 475
VSA D D NA + Y+I S
Sbjct: 130 VSATDADDDVNTYNAAIAYTIVS 152
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 93 EIVITVTDQNDNRPEF 108
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 102
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D
Sbjct: 163 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKD 213
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 90
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 1080 GSGN----KRDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 210
Query: 1135 VED 1137
V+D
Sbjct: 211 VKD 213
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 34 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDREN 888
K F ++ G I + S DRE+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 119 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
GVI L + T T+ + A+D + LS+ + ++D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 640 RDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
RD+++ ++FYS++ D+ F I G + + +P+ + + A S
Sbjct: 28 RDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS 83
Query: 695 GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF- 753
+++ + + + D ND+ P F +E S+ E ++ A D+D N +
Sbjct: 84 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 143
Query: 754 --VSYSIIEGNGE----DKFGIFPD-GFMYVRNS-LDRETRDYYALTVLAEDHGKYPRSS 805
++Y+I+ + E + F + D G + V S LDRE+ Y L V A D S+
Sbjct: 144 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLST 203
Query: 806 SVPVVIHIID 815
+ VI + D
Sbjct: 204 TAKAVITVKD 213
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 426 D 426
D
Sbjct: 213 D 213
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQ 442
TG L V LDRE I Y L A + + + D NDN P F +
Sbjct: 57 TGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS 116
Query: 443 IPEDTQVGVSIVQVSAYDLD---CGKNAQVTYSIES 475
+ E G S+++VSA D D NA + Y+I S
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 92
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 93 EIVITVTDQNDNRPEF 108
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 17/174 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG + D +++ + +TDQN
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVADPMEIVITVTDQN 102
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D
Sbjct: 163 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKD 213
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + ++
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVAD 90
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 1080 GSGN----KRDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 210
Query: 1135 VED 1137
V+D
Sbjct: 211 VKD 213
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A + +
Sbjct: 34 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPM 92
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDREN 888
K F ++ G I + S DRE+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 119 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFKIV 665
F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F +
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 666 ETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
GVI L + T T+ + A+D + LS+ + ++D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 18/190 (9%)
Query: 640 RDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
RD+++ ++FYS++ D+ F I G + + +P+ + + A S
Sbjct: 28 RDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS 83
Query: 695 GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF- 753
++++ + + + D ND+ P F +E S+ E ++ A D+D N +
Sbjct: 84 NGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 143
Query: 754 --VSYSIIEGNGE----DKFGIFPD-GFMYVRNS-LDRETRDYYALTVLAEDHGKYPRSS 805
++Y+I+ + E + F + D G + V S LDRE+ Y L V A D S+
Sbjct: 144 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLST 203
Query: 806 SVPVVIHIID 815
+ VI + D
Sbjct: 204 TAKAVITVKD 213
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 345 DEKPQFTQNVLNISLLENSAANTLV-ATLTASDHDQDSI--------TGQLTVKTKLDRE 395
+EK +F +N++ I N T V ++T D+ + TG L V LDRE
Sbjct: 12 NEKGEFPKNLVQIK--SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE 69
Query: 396 TITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQ 455
I Y L A + + + + D NDN P F + + E G S+++
Sbjct: 70 AIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
Query: 456 VSAYDLD---CGKNAQVTYSIES 475
VSA D D NA + Y+I S
Sbjct: 130 VSATDADDDVNTYNAAIAYTIVS 152
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 426 D 426
D
Sbjct: 213 D 213
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A ++
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPM 92
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 93 EIVITVTDQNDNRPEF 108
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 22/214 (10%)
Query: 835 NLPPDS---FVGKLIATDKDVGRNAELSFALSNAKGD------FEIDSRNGFIKTMRSFD 885
NLP +S F +L+ D +N L ++++ D F I+ +G + + D
Sbjct: 8 NLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 886 RENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGA 945
RE + + L A D ++++ + + + + D NDN P+FL + + EG+
Sbjct: 68 RELIAR------FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGS 121
Query: 946 SIGTQVFRVSTMDADE--GLNGDVYYKIISGN----DDEHFSIDEATGQ-ITISKLLDRE 998
GT V V+ +DAD+ LNG + Y+I+S F+I+ TG IT++ LDRE
Sbjct: 122 KPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDRE 181
Query: 999 TVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
V ++ L + A D + LS+T I V D
Sbjct: 182 KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 980 FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPM 1039
F I+ +GQ++++K LDRE +++F+L+ A D + NQ+ + + I+V+D NDN P
Sbjct: 51 FIINPISGQLSVTKPLDRELIARFHLRAHAVD---INGNQVENPIDIVINVIDMNDNRPE 107
Query: 1040 FVKTESKISVYENTTVNTQLFHFQATDSD--IGVNNEVLFSI----GSGNKRDTFHMDPV 1093
F+ SV E + T + A D+D +N + + I S + F ++
Sbjct: 108 FLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNE 167
Query: 1094 TG-ILYLHKKLDYEEINSYVLNVTASD 1119
TG I+ + LD E++ Y L + A+D
Sbjct: 168 TGDIITVAAGLDREKVQQYTLIIQATD 194
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 380 DSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQY 439
+ I+GQL+V LDRE I + L+ A D + + + + D+NDN P F +
Sbjct: 54 NPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW 113
Query: 440 FKQIPEDTQVGVSIVQVSAYDLD--CGKNAQVTYSIESGSEAVDGGNRKATENAIVEIIK 497
+PE ++ G ++ V+A D D N + Y I S + + N N +II
Sbjct: 114 NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDII- 172
Query: 498 NSMVETLEFEHYNGYTFSI 516
++ L+ E YT I
Sbjct: 173 -TVAAGLDREKVQQYTLII 190
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Query: 740 ELVAKDSDLGNNGFVSYSIIEGNGEDK--FGIF---P-DGFMYVRNSLDRETRDYYALTV 793
ELV SD N + YS+ G G D+ GIF P G + V LDRE + L
Sbjct: 20 ELVRIRSDRDKNLSLRYSV-TGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA 78
Query: 794 LAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD-- 851
A D + + +VI++ID NDN+PEF + + SV E P ++V + A D D
Sbjct: 79 HAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDP 138
Query: 852 VGRNAELSFAL------SNAKGDFEIDSRNGFIKTMRS-FDRENLLQTT 893
N L + + + + F I++ G I T+ + DRE + Q T
Sbjct: 139 NALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 31/122 (25%)
Query: 336 LKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDH-DQDSITGQL-------- 386
+ ++++D ND +P+F V N S+ E S T V T+TA D D +++ G L
Sbjct: 94 IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQA 153
Query: 387 -------------------TVKTKLDRETITDYELKVIAKD-HGTPPQ--SSTATVFLFI 424
TV LDRE + Y L + A D G P S+TAT + +
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 213
Query: 425 ED 426
D
Sbjct: 214 TD 215
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
L T LDRE + + L A D + + + ++D+NDN P F H V + SV
Sbjct: 60 LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP- 118
Query: 96 NESVLPGTKVLQVIATDND 114
E PGT V+ V A D D
Sbjct: 119 -EGSKPGTYVMTVTAIDAD 136
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I +++L A D ++I+V D+ND+ P F ++ + E + G+Y
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126
Query: 280 VAGITATDED--TGVNAQIFYAFVS 302
V +TA D D +N + Y VS
Sbjct: 127 VMTVTAIDADDPNALNGMLRYRIVS 151
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 540 DMQATIDQIKYAIVYGDPKKK----FEINDRTGEIIT-AAKLDREEQSIYNLVVSA 590
D A ++Y IV P F IN+ TG+IIT AA LDRE+ Y L++ A
Sbjct: 137 DPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQA 192
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 27/215 (12%)
Query: 622 ITIPENA--AVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLN 674
I +PEN+ QE+ R+ DRD ++ R YS++ DQ F I +G + +
Sbjct: 7 INLPENSRGPFPQELVRIRS-DRDKNLSLR--YSVTGPGADQPPTGIFIINPISGQLSVT 63
Query: 675 KPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPV 734
KP+ + + A D + + + + + D+ND+ P F + S+ E +
Sbjct: 64 KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123
Query: 735 NNRFFELVAKDSDLGN--NGFVSYSIIEGNGEDKFGIFPDGF---------MYVRNSLDR 783
+ A D+D N NG + Y I+ + P+ F + V LDR
Sbjct: 124 GTYVMTVTAIDADDPNALNGMLRYRIVS---QAPSTPSPNMFTINNETGDIITVAAGLDR 180
Query: 784 ETRDYYALTVLAED---HGKYPRSSSVPVVIHIID 815
E Y L + A D + Y S++ VI + D
Sbjct: 181 EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 1088 FHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSF 1145
F ++P++G L + K LD E I + L A D ++ INV D NDN P F
Sbjct: 51 FIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 108
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQSIYNL---VVSARSRLSYGKTFVNITLLDLNDNAP 613
P F IN +G++ LDRE + ++L V + I ++D+NDN P
Sbjct: 47 PTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRD--SGVNSRIFYSLSS 656
F ++PE + G + A D D + +N + Y + S
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVS 151
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 22/214 (10%)
Query: 835 NLPPDS---FVGKLIATDKDVGRNAELSFALSNAKGD------FEIDSRNGFIKTMRSFD 885
NLP +S F +L+ D +N L ++++ D F I+ +G + + D
Sbjct: 8 NLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 886 RENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGA 945
RE + + L A D ++++ + + + + D NDN P+FL + + EG+
Sbjct: 68 RELIAR------FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGS 121
Query: 946 SIGTQVFRVSTMDADE--GLNGDVYYKIISGN----DDEHFSIDEATGQ-ITISKLLDRE 998
GT V V+ +DAD+ LNG + Y+I+S F+I+ TG IT++ LDRE
Sbjct: 122 KPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDRE 181
Query: 999 TVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
V ++ L + A D + LS+T I V D
Sbjct: 182 KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 980 FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPM 1039
F I+ +GQ++++K LDRE +++F+L+ A D + NQ+ + + I+V+D NDN P
Sbjct: 51 FIINPISGQLSVTKPLDRELIARFHLRAHAVD---INGNQVENPIDIVINVIDMNDNRPE 107
Query: 1040 FVKTESKISVYENTTVNTQLFHFQATDSD--IGVNNEVLFSI----GSGNKRDTFHMDPV 1093
F+ SV E + T + A D+D +N + + I S + F ++
Sbjct: 108 FLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNE 167
Query: 1094 TG-ILYLHKKLDYEEINSYVLNVTASD 1119
TG I+ + LD E++ Y L + A+D
Sbjct: 168 TGDIITVAAGLDREKVQQYTLIIQATD 194
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 380 DSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQY 439
+ I+GQL+V LDRE I + L+ A D + + + + D+NDN P F +
Sbjct: 54 NPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW 113
Query: 440 FKQIPEDTQVGVSIVQVSAYDLD--CGKNAQVTYSIESGSEAVDGGNRKATENAIVEIIK 497
+PE ++ G ++ V+A D D N + Y I S + + N N +II
Sbjct: 114 NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDII- 172
Query: 498 NSMVETLEFEHYNGYTFSI 516
++ L+ E YT I
Sbjct: 173 -TVAAGLDREKVQQYTLII 190
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 740 ELVAKDSDLGNNGFVSYSIIEGNGEDK--FGIF---P-DGFMYVRNSLDRETRDYYALTV 793
ELV SD N + YS+ G G D+ GIF P G + V LDRE + L
Sbjct: 20 ELVRIRSDRDKNLSLRYSV-TGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA 78
Query: 794 LAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD-- 851
A D + + +VI++ID NDN+PEF + + SV E P ++V + A D D
Sbjct: 79 HAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDP 138
Query: 852 -----VGRNAELSFALSNAKGD-FEIDSRNGFIKTMRS-FDRENLLQTT 893
+ R LS A S + F I++ G I T+ + DRE + Q T
Sbjct: 139 NALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 31/122 (25%)
Query: 336 LKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDH-DQDSITGQL-------- 386
+ ++++D ND +P+F V N S+ E S T V T+TA D D +++ G L
Sbjct: 94 IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQA 153
Query: 387 -------------------TVKTKLDRETITDYELKVIAKD-HGTPPQ--SSTATVFLFI 424
TV LDRE + Y L + A D G P S+TAT + +
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 213
Query: 425 ED 426
D
Sbjct: 214 TD 215
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
L T LDRE + + L A D + + + ++D+NDN P F H V + SV
Sbjct: 60 LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP- 118
Query: 96 NESVLPGTKVLQVIATDND 114
E PGT V+ V A D D
Sbjct: 119 -EGSKPGTYVMTVTAIDAD 136
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I +++L A D ++I+V D+ND+ P F ++ + E + G+Y
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126
Query: 280 VAGITATDED--TGVNAQIFYAFVS 302
V +TA D D +N + Y +S
Sbjct: 127 VMTVTAIDADDPNALNGMLRYRILS 151
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 27/215 (12%)
Query: 622 ITIPENA--AVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLN 674
I +PEN+ QE+ R+ DRD ++ R YS++ DQ F I +G + +
Sbjct: 7 INLPENSRGPFPQELVRIRS-DRDKNLSLR--YSVTGPGADQPPTGIFIINPISGQLSVT 63
Query: 675 KPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPV 734
KP+ + + A D + + + + + D+ND+ P F + S+ E +
Sbjct: 64 KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123
Query: 735 NNRFFELVAKDSDLGN--NGFVSYSIIEGNGEDKFGIFPDGF---------MYVRNSLDR 783
+ A D+D N NG + Y I+ + P+ F + V LDR
Sbjct: 124 GTYVMTVTAIDADDPNALNGMLRYRILS---QAPSTPSPNMFTINNETGDIITVAAGLDR 180
Query: 784 ETRDYYALTVLAED---HGKYPRSSSVPVVIHIID 815
E Y L + A D + Y S++ VI + D
Sbjct: 181 EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 1088 FHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSF 1145
F ++P++G L + K LD E I + L A D ++ INV D NDN P F
Sbjct: 51 FIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 108
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 540 DMQATIDQIKYAIVYGDPKKK----FEINDRTGEIIT-AAKLDREEQSIYNLVVSA 590
D A ++Y I+ P F IN+ TG+IIT AA LDRE+ Y L++ A
Sbjct: 137 DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQA 192
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQSIYNL---VVSARSRLSYGKTFVNITLLDLNDNAP 613
P F IN +G++ LDRE + ++L V + I ++D+NDN P
Sbjct: 47 PTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRD--SGVNSRIFYSLSS 656
F ++PE + G + A D D + +N + Y + S
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILS 151
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 15/210 (7%)
Query: 830 FSVMENLPPDSFVGKLIATDKDVGRNAELSFALSN--AKGDFEIDSRNGFIKTMRSFDRE 887
F + E PD + + +D D G + + + LS A F ID ++G I ++ DRE
Sbjct: 9 FVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDRE 67
Query: 888 NLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASI 947
Q T + +A D P L+ + V + D NDN P+FL Y + E +++
Sbjct: 68 ERAQYT----LMAQAVDRDTNRP-LEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNV 122
Query: 948 GTQVFRVSTMDADE---GLNGDVYYKIISGNDDEHFSIDEATGQI-TISKLLDRETVSKF 1003
GT V +V+ DAD+ G + + Y I+ G +FS++ TG I T +DRE ++
Sbjct: 123 GTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEAQTGIIRTALPNMDREAKEEY 180
Query: 1004 NLKVLARDAATVVSNQLSSTTMVTIDVLDE 1033
++ + A+D + LS TT VTI + D+
Sbjct: 181 HVVIQAKDMGGHMGG-LSGTTKVTITLTDD 209
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 380 DSITGQLTVKTKLDRETITDYELKVIAKDHGT-PPQSSTATVFLFIEDVNDNNPVFYPSQ 438
D +G + LDRE Y L A D T P + + ++D+NDN P F
Sbjct: 52 DDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEI 111
Query: 439 YFKQIPEDTQVGVSIVQVSAYDLD---CGKNAQVTYSIESG 476
Y +PE + VG S++QV+A D D G +A++ YSI G
Sbjct: 112 YHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG 152
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
Query: 523 MQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQS 582
++E G D + +SD+ + IKY + F I+D++G I LDREE++
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERA 70
Query: 583 IYNLVVSARSR-----LSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVA 637
Y L+ A R L F+ + + D+NDN P F + +PE + VG +
Sbjct: 71 QYTLMAQAVDRDTNRPLEPPSEFI-VKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQV 129
Query: 638 RARDRDS---GVNSRIFYS-LSSNPDDQFKIVETNGVIYLNKP 676
A D D G ++++ YS L P F + G+I P
Sbjct: 130 TASDADDPTYGNSAKLVYSILEGQP--YFSVEAQTGIIRTALP 170
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 958 DADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVS 1017
D D G +G++ Y + F ID+ +G I +K LDRE +++ L A D T +
Sbjct: 28 DIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDT--N 84
Query: 1018 NQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSD---IGVNNE 1074
L + + V D NDN P F+ +V E + V T + A+D+D G + +
Sbjct: 85 RPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAK 144
Query: 1075 VLFSIGSGNKRDTFHMDPVTGILYLH-KKLDYEEINSYVLNVTASDGG 1121
+++SI G F ++ TGI+ +D E Y + + A D G
Sbjct: 145 LVYSILEGQPY--FSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMG 190
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 751 NGFVSYSIIEGNGEDKFGIFPD--GFMYVRNSLDRETRDYYALTVLAEDHG-KYPRSSSV 807
+G + Y I+ G G + D G ++ +LDRE R Y L A D P
Sbjct: 33 DGNIKY-ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPS 91
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
++ + D NDN PEF + + +V E + V ++ A+D D G +A+L +++
Sbjct: 92 EFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILE 151
Query: 865 AKGDFEIDSRNGFIKT-MRSFDRE 887
+ F ++++ G I+T + + DRE
Sbjct: 152 GQPYFSVEAQTGIIRTALPNMDRE 175
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 220 DREHINKYNLTIIATDKG-NPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGS 278
DRE +Y L A D+ N P + I+ V D+ND+ P F Y A + E + G+
Sbjct: 65 DREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGT 124
Query: 279 YVAGITATDEDT---GVNAQIFYAFVSGNEHQWFEINPTSGLITT 320
V +TA+D D G +A++ Y+ + G +F + +G+I T
Sbjct: 125 SVIQVTASDADDPTYGNSAKLVYSILEG--QPYFSVEAQTGIIRT 167
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 36 LQTTGKLDRETVDFYQLNISA--RDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSV 93
+ T LDRE Y L A RD P + V + D+NDNPP F H + Y
Sbjct: 58 IHATKTLDREERAQYTLMAQAVDRDTNRPLEPPS-EFIVKVQDINDNPPEFLHEI--YHA 114
Query: 94 SLNESVLPGTKVLQVIATDNDQ---GDNAKITYYLSETERKFT 133
++ E GT V+QV A+D D G++AK+ Y + E + F+
Sbjct: 115 NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFS 157
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 25/194 (12%)
Query: 620 DEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQ-FKIVETNGVIYLNKPIQ 678
+E T P+ VG+ D DSG + I Y LS F I + +G I+ K +
Sbjct: 12 EEYTGPDPVLVGR-----LHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLD 65
Query: 679 SPPGSTLTIEIVASDSG-KQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNR 737
+ T+ A D + L V +QD+ND+ P F Y ++ E + V
Sbjct: 66 REERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTS 125
Query: 738 FFELVAKDSD---LGNNGFVSYSIIEGNG----EDKFGIFPDGFMYVRNSL---DRETRD 787
++ A D+D GN+ + YSI+EG E + GI +R +L DRE ++
Sbjct: 126 VIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGI-------IRTALPNMDREAKE 178
Query: 788 YYALTVLAEDHGKY 801
Y + + A+D G +
Sbjct: 179 EYHVVIQAKDMGGH 192
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 1067 SDIGVNNEVLFSIGSGNKRDT-FHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPR- 1124
SDI + + I SG T F +D +G ++ K LD EE Y L A D T R
Sbjct: 27 SDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRP 86
Query: 1125 LSTIFMFTINVEDCNDNPPSF 1145
L F + V+D NDNPP F
Sbjct: 87 LEPPSEFIVKVQDINDNPPEF 107
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 23/100 (23%)
Query: 334 TQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDS-----------I 382
++ V + D ND P+F + + ++ E S T V +TASD D + +
Sbjct: 91 SEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSIL 150
Query: 383 TGQ------------LTVKTKLDRETITDYELKVIAKDHG 410
GQ T +DRE +Y + + AKD G
Sbjct: 151 EGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMG 190
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 95/202 (47%), Gaps = 20/202 (9%)
Query: 842 VGKLIATDKDVGRNAELSFAL--SNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFIS 899
VGK++ +D+ G L+ + KG F I+ G + R+ DRE + T Q ++
Sbjct: 22 VGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETI--ATYQLYVE 79
Query: 900 LEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDA 959
+D L+ V ++V + DQNDN P F PY + EG+ GT V R++ DA
Sbjct: 80 ----TTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDA 135
Query: 960 DEGL--NGDVYYKIISGNDDE----HFSIDEATGQITI---SKLLDRETVS--KFNLKVL 1008
D+ N + Y I D+ F ID G I LLDRET+ K+ L +
Sbjct: 136 DDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIE 195
Query: 1009 ARDAATV-VSNQLSSTTMVTID 1029
A+D A + V ++T + ID
Sbjct: 196 AQDMAGLDVGLTGTATATIVID 217
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 773 GFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSV 832
G + V +LDRET Y L V D VP+ + +ID+NDN+P F ++ V
Sbjct: 58 GSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHV 117
Query: 833 MENLPPDSFVGKLIATDKD--VGRNAELSFALSNAKGD------FEIDSRNGFIKTMRS- 883
ME P + V ++ A D D NA L + + D F ID G I T+ S
Sbjct: 118 MEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSP 177
Query: 884 --FDRENL 889
DRE L
Sbjct: 178 ALLDRETL 185
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 951 VFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLAR 1010
V +V D EG + K + + F I+E TG +++++ LDRET++ + L V
Sbjct: 22 VGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT 81
Query: 1011 DAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSD 1068
DA+ L + + V+D+NDN P+F + V E + T + A D+D
Sbjct: 82 DAS---GKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDAD 136
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQ 442
TG ++V LDRETI Y+L V D + + + D NDN P+F Y
Sbjct: 57 TGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGH 116
Query: 443 IPEDTQVGVSIVQVSAYDLD--CGKNAQVTYSIESGSEAVDGGNR---KATENAIVEIIK 497
+ E + G ++++++A+D D NA + Y+I + N + IV ++
Sbjct: 117 VMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVS 176
Query: 498 NSMV--ETLEFEHYNGYTFSILEDHDKMQENLGRDVG 532
+++ ETLE Y I+E Q+ G DVG
Sbjct: 177 PALLDRETLENPKYE----LIIE----AQDMAGLDVG 205
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
+ T LDRET+ YQL + D T G + + V ++D NDN PIF Y +
Sbjct: 60 VSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFRE--GPYIGHV 117
Query: 96 NESVLPGTKVLQVIATDNDQG--DNAKITYYLSETERKFTNCQQQRPGGSCP 145
E GT V+++ A D D DNA + Y N +QQ P P
Sbjct: 118 MEGSPTGTTVMRMTAFDADDPATDNALLRY----------NIRQQTPDKPSP 159
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 510 NGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGE 569
+G S + + ++ RDVGK+ + + + + ++ V DPK F IN+ TG
Sbjct: 1 SGIVVSPILIPENQRQPFPRDVGKV-VDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGS 59
Query: 570 IITAAKLDREEQSIYNLVVS---ARSRLSYGKTFVNITLLDLNDNAPIF 615
+ LDRE + Y L V A + G + + ++D NDN PIF
Sbjct: 60 VSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIF 108
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 622 ITIPENAAVGQEIYVARARDRDSGVNSRIFYS---LSSNPDDQFKIVETNGVIYLNKPIQ 678
I IPEN V + D D S+ + + +P F+I E G + + + +
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 679 SPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRF 738
+T + + +D+ ++L + V + D ND+ P+F Y ++E +P
Sbjct: 68 RETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTV 127
Query: 739 FELVAKDSD--LGNNGFVSYSI 758
+ A D+D +N + Y+I
Sbjct: 128 MRMTAFDADDPATDNALLRYNI 149
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I Y L + TD L + V D ND+ P+F + Y + E +P G+
Sbjct: 67 DRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTT 126
Query: 280 VAGITATDEDTGV--NAQIFYAFVSGNEHQ----WFEINPTSGLITT 320
V +TA D D NA + Y + F I+P G I T
Sbjct: 127 VMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVT 173
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 1083 NKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNP 1142
+ + TF ++ TG + + + LD E I +Y L V +D L + V D NDN
Sbjct: 46 DPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNR 105
Query: 1143 PSF 1145
P F
Sbjct: 106 PIF 108
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 326 GPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHD 378
GP P L+V ++D+ND +P F + ++E S T V +TA D D
Sbjct: 90 GPVP------LEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDAD 136
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K DRE + + VS NG+ ++D +++ + +TDQN
Sbjct: 49 GVFIIERETGWLKVTEPLDRERI-----ATYTLFSHAVSSNGN-AVEDPMEILITVTDQN 102
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGN----DDEH 979
DN P+F + +K + EGA GT V V+ DAD+ + N + Y I+S + D
Sbjct: 103 DNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNM 162
Query: 980 FSIDEATGQIT-ISKLLDRETVSKFNLKVLARD 1011
F+I+ TG I+ ++ LDRE+ + L V A D
Sbjct: 163 FTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 965 GDVYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQL 1020
G V+Y I D F I+ TG + +++ LDRE ++ + L A + N +
Sbjct: 32 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTL---FSHAVSSNGNAV 88
Query: 1021 SSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLF 1077
+ I V D+NDN P F + K SV E T + ATD+D VN + +
Sbjct: 89 EDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAY 148
Query: 1078 SIGSGNK----RDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASD 1119
+I S + ++ F ++ TG++ + LD E +Y L V A+D
Sbjct: 149 TILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 741 LVAKDSDLGNNGFVSYSIIEGNGED--KFGIF----PDGFMYVRNSLDRETRDYYALTVL 794
LV S+ G V YSI G G D G+F G++ V LDRE Y L
Sbjct: 21 LVQIKSNKDKEGKVFYSIT-GQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSH 79
Query: 795 AEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD--- 851
A + ++I + D+NDNKPEF+ F SVME P + V ++ ATD D
Sbjct: 80 AVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDV 139
Query: 852 VGRNAELSFALSNA------KGDFEIDSRNGFIKTMRS-FDRENL 889
NA +++ + + K F I+ G I + + DRE+
Sbjct: 140 NTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRESF 184
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + S
Sbjct: 59 WLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEV--FKGS 116
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
+ E LPGT V++V ATD D NA I Y +
Sbjct: 117 VMEGALPGTSVMEVTATDADDDVNTYNAAIAYTI 150
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 649 RIFYSLSSN-----PDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKH 703
++FYS++ P F I G + + +P+ +T T+ A S ++
Sbjct: 33 KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPM 92
Query: 704 SVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF---VSYSIIE 760
+ + + D ND+ P F ++ S++E E+ A D+D N + ++Y+I+
Sbjct: 93 EILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILS 152
Query: 761 GNGEDKFGIFPDGFMY-----------VRNSLDRETRDYYALTVLAED 797
+ E PD M+ V LDRE+ Y L V A D
Sbjct: 153 QDPE-----LPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 29/103 (28%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD----------SITG 384
++ +++ D+ND KP+FTQ V S++E + T V +TA+D D D +I
Sbjct: 93 EILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILS 152
Query: 385 Q-------------------LTVKTKLDRETITDYELKVIAKD 408
Q V T LDRE+ Y L V A D
Sbjct: 153 QDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I Y L A ++I V D ND++P F + + + E A G+
Sbjct: 67 DRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V +TATD D V NA I Y +S + + F IN +G+I+ T
Sbjct: 127 VMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVT 176
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQSIYNL---VVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + Y L VS+ + IT+ D NDN P
Sbjct: 47 PVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKP 106
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYS-LSSNPD----DQFKIV 665
F ++ + ++ E A G + A D D V N+ I Y+ LS +P+ + F I
Sbjct: 107 EFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTIN 166
Query: 666 ETNGVI 671
GVI
Sbjct: 167 RNTGVI 172
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQ 442
TG L V LDRE I Y L A + + + D NDN P F +
Sbjct: 57 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGS 116
Query: 443 IPEDTQVGVSIVQVSAYDLD---CGKNAQVTYSIES 475
+ E G S+++V+A D D NA + Y+I S
Sbjct: 117 VMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILS 152
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 17/174 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I S NG ++D +++ + +TDQN
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHADSSNGE-AVEDPMEIVITVTDQN 102
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGL---NGDVYYKIISGNDD----EH 979
DN P+F + ++ ++EGA GT V +VS DAD+ + N + Y I+S + +
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 980 FSIDEATGQITI-SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
F+++ TG I++ + LDRE+ + L V A D + LS+T I V D
Sbjct: 163 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD---LQGEGLSTTAKAVITVKD 213
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHADSSNGEAVED 90
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNN---EVLFSI 1079
+ I V D+NDN P F + + SV E T + ATD+D VN + ++I
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 1080 GSGN----KRDTFHMDPVTGIL-YLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTIN 1134
S + ++ F ++ TG++ L LD E +Y L V A+D LST I
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 210
Query: 1135 VED 1137
V+D
Sbjct: 211 VKD 213
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A+ +
Sbjct: 34 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPM 92
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFALSN 864
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D NA +++ + +
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 865 A------KGDFEIDSRNGFIKTMRS-FDREN 888
K F ++ G I + S DRE+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 59 WLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYL 125
E +PGT V++V ATD D NA I Y +
Sbjct: 119 --EGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 67 DREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGN----EHQWFEINPTSGLITTKT 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 640 RDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
RD+++ ++FYS++ D+ F I G + + +P+ + + A S
Sbjct: 28 RDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSS 83
Query: 695 GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF- 753
+++ + + + D ND+ P F +E S+ E ++ A D+D N +
Sbjct: 84 NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN 143
Query: 754 --VSYSIIEGNGE----DKFGIFPD-GFMYVRNS-LDRETRDYYALTVLAEDHGKYPRSS 805
++Y+I+ + E + F + D G + V S LDRE+ Y L V A D S+
Sbjct: 144 AAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLST 203
Query: 806 SVPVVIHIID 815
+ VI + D
Sbjct: 204 TAKAVITVKD 213
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 16/169 (9%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSRLSYGKTF-----VNITLLDLNDN 611
P F I TG + LDRE + Y L A S S G+ + IT+ D NDN
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHADS--SNGEAVEDPMEIVITVTDQNDN 104
Query: 612 APIFNRDKDEITIPENAAVGQEIYVARARDRDSGV---NSRIFYSL-SSNPD----DQFK 663
P F ++ E ++ E A G + A D D V N+ I Y++ S +P+ + F
Sbjct: 105 RPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFT 164
Query: 664 IVETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
+ GVI L + T T+ + A+D + LS+ + ++D
Sbjct: 165 VNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD-------------- 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 381 --------------SITGQLTVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIE 425
TG ++V T LDRE+ Y L V A D S+TA + ++
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 426 D 426
D
Sbjct: 213 D 213
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 345 DEKPQFTQNVLNISLLENSAANTLV-ATLTASDHDQDSI--------TGQLTVKTKLDRE 395
+EK +F +N++ I N T V ++T D+ + TG L V LDRE
Sbjct: 12 NEKGEFPKNLVQIK--SNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE 69
Query: 396 TITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQ 455
I Y L A + + + D NDN P F + + E G S+++
Sbjct: 70 AIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMK 129
Query: 456 VSAYDLD---CGKNAQVTYSIES 475
VSA D D NA + Y+I S
Sbjct: 130 VSATDADDDVNTYNAAIAYTIVS 152
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPM 92
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 93 EIVITVTDQNDNRPEF 108
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 120/280 (42%), Gaps = 26/280 (9%)
Query: 875 NGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLR 934
NG ++ + +D E L +F + + N + D +V + + D ND P F+
Sbjct: 49 NGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFIN 108
Query: 935 TPYKVQ--ISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITIS 992
P +Q + A T VF + D D N ++Y I+ F +DE +G +
Sbjct: 109 RPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTR 166
Query: 993 KL----LDRETVSKFNLKVLARDA-ATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKI 1047
LD E V L V A D V + ST + ++ AP F +
Sbjct: 167 GTDLFQLDMEYV----LYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEA 221
Query: 1048 SVYENTTVNTQLFHFQATDSDIGVNNEVLFSI-GSGNKRDTFHMDPVTGILYLHKKLDYE 1106
+ EN ++ + +A + E+ +++ G TF++ P +GI+ L K+LD+E
Sbjct: 222 EIPENQKKDSDIISIKAKSF---ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFE 278
Query: 1107 EINS---YVLNVTASD--GGTPRLSTIFMFTINVEDCNDN 1141
++ Y L VTA++ GG ST TI V D NDN
Sbjct: 279 DLRQPHVYSLIVTATEDSGG---FSTSVDLTIRVTDVNDN 315
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 101/235 (42%), Gaps = 16/235 (6%)
Query: 809 VVIHIIDENDNKPEFSNSSFVFS--VMENLPPDSFVGKLIATDKDVGRNAELSFALSNAK 866
V+I + D ND P F N V N PP++ V L A D D N
Sbjct: 92 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTG 151
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGS---PRLKDKVKVDVYIT 923
G FE+D R+G ++T + +L Q + + ++A NG R + + + I
Sbjct: 152 GRFEVDERSGVVRTRGT----DLFQLDMEYVLYVKAE-DQNGKVDDRRFQSTPEERLSIV 206
Query: 924 DQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKI-ISGNDDEHFSI 982
+PQF Y+ +I E + + ++ A + ++ Y + G F+I
Sbjct: 207 G-GKRAPQFYMPSYEAEIPENQKKDSDII---SIKAKSFADREIRYTLKAQGQGAGTFNI 262
Query: 983 DEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNA 1037
+G + ++K LD E + + ++ L AT S S++ +TI V D NDNA
Sbjct: 263 GPTSGIVKLAKELDFEDLRQPHVYSLIV-TATEDSGGFSTSVDLTIRVTDVNDNA 316
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 247 LIIHVNDVNDHEPVF--EKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGN 304
+II V DVND P F AV+ AP + V + A D DT N I Y V
Sbjct: 92 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDR 149
Query: 305 EHQWFEINPTSGLITTKTRD 324
FE++ SG++ T+ D
Sbjct: 150 TGGRFEVDERSGVVRTRGTD 169
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 842 VGKLIATDKDVGRNAELSFAL--SNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFIS 899
VGK+I ++ G LS + KG F I+ +G + R DRE + N+
Sbjct: 21 VGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAI-----ANY-Q 74
Query: 900 LEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDA 959
LE V+D + V++D+ + DQNDN P F PY + EG+ GT V R++ DA
Sbjct: 75 LEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDA 134
Query: 960 DEGL--NGDVYYKIISGNDDE----HFSIDEATGQITI---SKLLDRETV--SKFNLKVL 1008
D+ N + Y I+ + F ID G I LLDRET+ K+ L +
Sbjct: 135 DDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIE 194
Query: 1009 ARDAA 1013
A+D
Sbjct: 195 AKDMG 199
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 930 PQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQI 989
P F R+ KV SEG G + FR+S D+ G F I+E +G +
Sbjct: 15 PPFPRSVGKVIRSEGTE-GAK-FRLSGKGVDQDPKG-------------IFRINEISGDV 59
Query: 990 TISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISV 1049
++++ LDRE ++ + L+V D + + + + I V+D+NDN PMF + V
Sbjct: 60 SVTRPLDREAIANYQLEVEVTDLSGKI---IDGPVRLDISVIDQNDNRPMFKEGPYVGHV 116
Query: 1050 YENTTVNTQLFHFQATDSD 1068
E + T + A D+D
Sbjct: 117 MEGSPTGTTVMRMTAFDAD 135
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 336 LKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQ------DSITGQLTVK 389
L IL +++P F ++V + E + + D D + I+G ++V
Sbjct: 3 LATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVT 62
Query: 390 TKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQV 449
LDRE I +Y+L+V D + + + D NDN P+F Y + E +
Sbjct: 63 RPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPT 122
Query: 450 GVSIVQVSAYDLD--CGKNAQVTYSI 473
G ++++++A+D D NA + Y+I
Sbjct: 123 GTTVMRMTAFDADDPSTDNALLRYNI 148
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 760 EGNGEDKFGIFP----DGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIID 815
+G +D GIF G + V LDRE Y L V D V + I +ID
Sbjct: 40 KGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVID 99
Query: 816 ENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD--VGRNAELSFAL------SNAKG 867
+NDN+P F +V VME P + V ++ A D D NA L + + +
Sbjct: 100 QNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPN 159
Query: 868 DFEIDSRNGFIKTMRS---FDRENL 889
F ID G I T+ S DRE +
Sbjct: 160 MFYIDPEKGDIVTVVSPVLLDRETM 184
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 529 RDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNL-- 586
R VGK+ IR+ + ++ V DPK F IN+ +G++ LDRE + Y L
Sbjct: 19 RSVGKV-IRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEV 77
Query: 587 -VVSARSRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRD 643
V ++ G ++I+++D NDN P+F + E + G + A D D
Sbjct: 78 EVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDAD 135
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 29/202 (14%)
Query: 622 ITIPENA------AVGQEIYVARARDRDSGVNSRIFY----SLSSNPDDQFKIVETNGVI 671
I IPEN +VG+ I R G F + +P F+I E +G +
Sbjct: 7 ILIPENQRPPFPRSVGKVI-------RSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDV 59
Query: 672 YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLES 731
+ +P+ + +E+ +D + + +++ + D ND+ P+F Y ++E
Sbjct: 60 SVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEG 119
Query: 732 TPVNNRFFELVAKDSD--LGNNGFVSYSIIEGN----GEDKFGIFPD-GFMYVRNS---L 781
+P + A D+D +N + Y+I++ + F I P+ G + S L
Sbjct: 120 SPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVLL 179
Query: 782 DRETRD--YYALTVLAEDHGKY 801
DRET + Y L + A+D G +
Sbjct: 180 DRETMETPKYELVIEAKDMGGH 201
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I Y L + TD L I V D ND+ P+F++ Y + E +P G+
Sbjct: 66 DREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTT 125
Query: 280 VAGITATDED--TGVNAQIFYAFVSGNEHQ----WFEINPTSGLITT 320
V +TA D D + NA + Y + + F I+P G I T
Sbjct: 126 VMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVT 172
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
+ T LDRE + YQL + D G ++++++++D NDN P+F Y +
Sbjct: 59 VSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKE--GPYVGHV 116
Query: 96 NESVLPGTKVLQVIATDND--QGDNAKITY-YLSETERK 131
E GT V+++ A D D DNA + Y L +T K
Sbjct: 117 MEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTK 155
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 34/126 (26%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDS---------ITGQ 385
+L +S++D+ND +P F + ++E S T V +TA D D S I Q
Sbjct: 92 RLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQ 151
Query: 386 LTVKTK---------------------LDRETI--TDYELKVIAKDHGTP--PQSSTATV 420
K LDRET+ YEL + AKD G + TAT
Sbjct: 152 TPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMGGHDVGLTGTATA 211
Query: 421 FLFIED 426
+ I+D
Sbjct: 212 TILIDD 217
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 1034 NDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNK--RDTFHMD 1091
NDN+P F K+ + + EN+ T + +A D D+GVN ++ + G+ + R +D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 1092 PVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPP 1143
+G L + ++D EE+N V A D G P + +N++D NDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 926 NDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDD--EHFSID 983
NDNSP+F ++ Y+ ++E ++ GT + ++ D D G+NG + Y + + +D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 984 EATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAP 1038
E +G +++ +DRE V++ V+ARD + V +++ DENDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPK---TDKATVVLNIKDENDNVP 119
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 713 NDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD 772
ND++P F+ S YE L E++ +L A D D+G NG + Y + + D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 773 ---GFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKP 821
G++ V + +DRE + TV+A D G+ P++ VV++I DENDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 23/112 (20%)
Query: 344 NDEKPQFTQNVLNISLLENSAANTLVATLTASDHD-----------------------QD 380
ND P+F ++V L ENSA T + L A+D D D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 381 SITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNP 432
+G L+V ++DRE + V+A+D G PP++ ATV L I+D NDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 817 NDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNA----KGDFEID 872
NDN P F S + + EN P + + +L A D DVG N ++ + A + +D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 873 SRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSP 930
+G++ + DRE + N + D G P DK V + I D+NDN P
Sbjct: 68 ETSGWLSVLHRIDREEV------NQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 78 NDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYL---SETERKFTN 134
NDN P F SV Y L E+ PGT +LQ+ A D D G N +I Y +E+ R+
Sbjct: 8 NDNSPRFEKSV--YEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLR 65
Query: 135 CQQ--------QRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDP 180
+ R FTV ARD G P + + V +N+ D ND+ P
Sbjct: 66 LDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 18/112 (16%)
Query: 255 NDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNE--HQWFEIN 312
ND+ P FEKS Y A L+E + G+ + + A D D GVN QI Y F + E + ++
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 313 PTSGLI----------------TTKTRDGGPNPKWAYTQLKVSILDENDEKP 348
TSG + T RD G PK + ++I DEND P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 609 NDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIV--- 665
NDN+P F + E + EN+A G I RA D D GVN +I Y + + +++
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 666 ETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTP 717
ET+G + + I + L ++A D G+ + K +V + I+D ND+ P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 428 NDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSEAV 480
NDN+P F S Y + E++ G I+Q+ A DLD G N Q+ Y + +E+V
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESV 60
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEP 259
DRE +N+ T++A D+G PP+T A +++++ D ND+ P
Sbjct: 80 DREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPP 82
+L ++DRE V+ + + ARD G P + V + I D NDN P
Sbjct: 72 WLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin
9
Length = 114
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 9/111 (8%)
Query: 1034 NDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGS----GNKRDTFH 1089
NDN P+F + + ++ + EN V T + ATD+DIG N E+ + G+ KR F
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKR-LFA 66
Query: 1090 MDPVTGILYLHKKLDYEEINSYVLNVTASDG-GTPRLSTIFMFTINVEDCN 1139
++ TG++ + + LD EE + + V ASDG TP +T+ TINV D N
Sbjct: 67 LNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATV---TINVTDVN 114
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 926 NDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKI---ISGNDDEHFSI 982
NDN P F +V I E A +GT V ++ DAD G N ++ Y ++ F++
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 983 DEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDEN 1034
+ TG IT+ + LDRE + + VLA D ++ + VTI+V D N
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSST-----PARATVTINVTDVN 114
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 713 NDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFP- 771
ND+ PVF E + E+ PV +L A D+D+G+N + Y +F
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 772 ---DGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDEN 817
G + V+ SLDRE + +TVLA D P ++ V I++ D N
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARAT--VTINVTDVN 114
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 255 NDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAF---VSGNEHQWFEI 311
ND+ PVF++ + + E AP G+ V + ATD D G NA+I Y F V+ + F +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 312 NPTSGLITTK 321
N T+GLIT +
Sbjct: 68 NNTTGLITVQ 77
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 609 NDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSN--PDDQ--FKI 664
NDN P+F + E+ IPENA VG + A D D G N+ I Y + P + F +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 665 VETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVN 713
T G+I + + + + + ++ASD S ++ +V + + DVN
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDG--SSTPARATVTINVTDVN 114
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 428 NDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTY 471
NDN PVF Q IPE+ VG S++Q+ A D D G NA++ Y
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRY 51
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 817 NDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALS-----NAKGDFEI 871
NDN+P F + EN P + V +L ATD D+G NAE+ + K F +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 872 DSRNGFIKTMRSFDRE 887
++ G I RS DRE
Sbjct: 68 NNTTGLITVQRSLDRE 83
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 344 NDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDS---------------------- 381
ND +P F + + + + EN+ T V L A+D D S
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 382 --ITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVN 428
TG +TV+ LDRE +++ V+A D + P + ATV + + DVN
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSSTP--ARATVTINVTDVN 114
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 78 NDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYL 125
NDN P+F + + N V GT V+Q+ ATD D G NA+I Y
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPV--GTSVIQLHATDADIGSNAEIRYIF 53
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 841 FVGKLIATDKDVGRNAELSFALS-NAKGD-FEIDSRNGFIKTMRSFDRENLLQTTGQNFI 898
+VGKL +D+D G + L + LS + GD F I+ G I+ + DRE +
Sbjct: 20 YVGKL-HSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREE----KPVYIL 73
Query: 899 SLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMD 958
+A G P ++ + + + I D NDN P F + Y + E A +GT V +V+ D
Sbjct: 74 RAQAVNRRTGRP-VEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATD 132
Query: 959 ADE---GLNGDVYYKIISGNDDEHFSIDEATGQITISKL-LDRETVSKFNLKVLARDAAT 1014
AD+ G + V Y I+ G +FS++ TG I + L +DRE ++ + + A+D
Sbjct: 133 ADDPTYGNSAKVVYSILQGQ--PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGG 190
Query: 1015 VVSNQLSSTTMVTIDVLD 1032
+ LS TT V I + D
Sbjct: 191 QMGG-LSGTTTVNITLTD 207
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 220 DREHINKYNLTIIATDK--GNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAG 277
DRE Y L A ++ G P + F II ++D+ND+EP+F K Y+A + E+A G
Sbjct: 64 DREEKPVYILRAQAVNRRTGRPVEPESEF-IIKIHDINDNEPIFTKDVYTATVPEMADVG 122
Query: 278 SYVAGITATDEDT---GVNAQIFYAFVSGNEHQWFEINPTSGLITT 320
++V +TATD D G +A++ Y+ + G +F + +G+I T
Sbjct: 123 TFVVQVTATDADDPTYGNSAKVVYSILQG--QPYFSVESETGIIKT 166
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 523 MQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQS 582
++E G D + +SD +KY + F IN+ TG+I +LDREE+
Sbjct: 10 LEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKP 69
Query: 583 IYNLVVSARSRLSYGK------TFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYV 636
+Y L A +R + G+ F+ I + D+NDN PIF +D T+PE A VG +
Sbjct: 70 VYILRAQAVNRRT-GRPVEPESEFI-IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQ 127
Query: 637 ARARDRDS---GVNSRIFYS-LSSNPDDQFKIVETNGVI---YLNKPIQSPPGSTLTIEI 689
A D D G ++++ YS L P F + G+I LN ++ + I+
Sbjct: 128 VTATDADDPTYGNSAKVVYSILQGQP--YFSVESETGIIKTALLNMDRENREQYQVVIQ- 184
Query: 690 VASDSGKQ--SLSSKHSVNVYIQD 711
A D G Q LS +VN+ + D
Sbjct: 185 -AKDMGGQMGGLSGTTTVNITLTD 207
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTP-PQSSTATVFLFIEDVNDNNPVFYPSQYFK 441
TG + +LDRE Y L+ A + T P + + I D+NDN P+F Y
Sbjct: 54 TGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTA 113
Query: 442 QIPEDTQVGVSIVQVSAYDLD---CGKNAQVTYSIESG 476
+PE VG +VQV+A D D G +A+V YSI G
Sbjct: 114 TVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG 151
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 11/172 (6%)
Query: 728 LLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD--GFMYVRNSLDRET 785
L E T + ++ + D D G+ G + Y I+ G+G I + G + LDRE
Sbjct: 10 LEEYTGSDYQYVGKLHSDQDRGD-GSLKY-ILSGDGAGDLFIINENTGDIQATKRLDREE 67
Query: 786 RDYYALTVLAEDH--GKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVG 843
+ Y L A + G+ P +I I D NDN+P F+ + +V E +FV
Sbjct: 68 KPVYILRAQAVNRRTGR-PVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVV 126
Query: 844 KLIATDKD---VGRNAELSFALSNAKGDFEIDSRNGFIKT-MRSFDRENLLQ 891
++ ATD D G +A++ +++ + F ++S G IKT + + DREN Q
Sbjct: 127 QVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMDRENREQ 178
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 15/175 (8%)
Query: 635 YVARAR-DRDSGVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPI--QSPPGSTLTIEIVA 691
YV + D+D G S + D F I E G I K + + P L + V
Sbjct: 20 YVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVN 79
Query: 692 SDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSD---L 748
+G+ + + + I D+ND+ P+F Y ++ E V ++ A D+D
Sbjct: 80 RRTGR-PVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTY 138
Query: 749 GNNGFVSYSIIEGNG----EDKFGIFPDGFMYVRNSLDRETRDYYALTVLAEDHG 799
GN+ V YSI++G E + GI + ++DRE R+ Y + + A+D G
Sbjct: 139 GNSAKVVYSILQGQPYFSVESETGIIKTALL----NMDRENREQYQVVIQAKDMG 189
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 958 DADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVS 1017
D D G +G + Y + + F I+E TG I +K LDRE + L+ A + T
Sbjct: 27 DQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRT--G 83
Query: 1018 NQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSD---IGVNNE 1074
+ + I + D NDN P+F K +V E V T + ATD+D G + +
Sbjct: 84 RPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAK 143
Query: 1075 VLFSIGSGNKRDTFHMDPVTGILYLH-KKLDYEEINSYVLNVTASDGG 1121
V++SI G F ++ TGI+ +D E Y + + A D G
Sbjct: 144 VVYSILQGQPY--FSVESETGIIKTALLNMDRENREQYQVVIQAKDMG 189
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 36 LQTTGKLDRETVDFYQLNISA--RDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSV 93
+Q T +LDRE Y L A R G P + + I D+NDN PIF V Y+
Sbjct: 57 IQATKRLDREEKPVYILRAQAVNRRTGRPVE-PESEFIIKIHDINDNEPIFTKDV--YTA 113
Query: 94 SLNESVLPGTKVLQVIATDNDQ---GDNAKITYYLSETERKFT 133
++ E GT V+QV ATD D G++AK+ Y + + + F+
Sbjct: 114 TVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFS 156
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 1075 VLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPR-LSTIFMFTI 1133
+L G+G D F ++ TG + K+LD EE Y+L A + T R + F I
Sbjct: 38 ILSGDGAG---DLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFII 94
Query: 1134 NVEDCNDNPPSF 1145
+ D NDN P F
Sbjct: 95 KIHDINDNEPIF 106
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 23/100 (23%)
Query: 334 TQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQ-------------- 379
++ + I D ND +P FT++V ++ E + T V +TA+D D
Sbjct: 90 SEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSIL 149
Query: 380 --------DSITGQL-TVKTKLDRETITDYELKVIAKDHG 410
+S TG + T +DRE Y++ + AKD G
Sbjct: 150 QGQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMG 189
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 837 PPDSFVGKLIATDKDVG-RNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQ 895
P VGKL ++ VG +NA +A F++ +G I DRE +
Sbjct: 16 PLPHHVGKLTSS---VGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAE---- 68
Query: 896 NFISLEATVSDNGSPR-LKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRV 954
L A + D + R L+ K + ++D NDN+P F++ + + E + +GT V +V
Sbjct: 69 --YELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKV 126
Query: 955 STMDADE---GLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARD 1011
+ DAD+ + V Y+II GN E+F++D++ T LDRE+ S + + V A+D
Sbjct: 127 TAEDADDPTVAGHATVTYQIIKGN--EYFTVDDSGVIFTARADLDRESQSAYEIIVKAKD 184
Query: 1012 AATVVSNQLSSTTMVTIDVLD 1032
A + SST V I + D
Sbjct: 185 ALGLTGE--SSTATVIIRLTD 203
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 359 LLENSAANTLVATLTASDHDQDSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTA 418
++E +ANT+ +D G + +LDRE +YEL D
Sbjct: 36 IIEGESANTI---FKVQGYD-----GDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPP 87
Query: 419 TVFLF-IEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLD---CGKNAQVTYSIE 474
+ F+ + D+NDN P+F + +PE +++G S+ +V+A D D +A VTY I
Sbjct: 88 SKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQII 147
Query: 475 SGSE 478
G+E
Sbjct: 148 KGNE 151
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 23/116 (19%)
Query: 334 TQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDSITGQLTV----- 388
++ + + D ND P F Q + N S+ E S T V +TA D D ++ G TV
Sbjct: 88 SKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQII 147
Query: 389 -----------------KTKLDRETITDYELKVIAKDH-GTPPQSSTATVFLFIED 426
+ LDRE+ + YE+ V AKD G +SSTATV + + D
Sbjct: 148 KGNEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 697 QSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSD---LGNNGF 753
+SL + + D+ND+ P+F + S+ E + + ++ A+D+D + +
Sbjct: 82 RSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHAT 141
Query: 754 VSYSIIEGNGEDKFGIFPDGFMY-VRNSLDRETRDYYALTVLAEDH-GKYPRSSSVPVVI 811
V+Y II+GN + F + G ++ R LDRE++ Y + V A+D G SS+ V+I
Sbjct: 142 VTYQIIKGN--EYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVII 199
Query: 812 HIID 815
+ D
Sbjct: 200 RLTD 203
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 220 DREHINKYNLTIIATDKGN-----PPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELA 274
DRE +Y LT D+ N PP II V+D+ND+ P+F + ++ + E++
Sbjct: 62 DREKKAEYELTAHIIDRRNNRSLEPPSK----FIIKVSDINDNAPIFVQKIFNGSVPEMS 117
Query: 275 PAGSYVAGITATDED---TGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTRDGGPNPKW 331
G+ V +TA D D +A + Y + GNE +F ++ SG+I T D +
Sbjct: 118 RLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE--YFTVD-DSGVIFTARADLDRESQS 174
Query: 332 AY 333
AY
Sbjct: 175 AY 176
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 980 FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPM 1039
F + G I + LDRE +++ L D + L + I V D NDNAP+
Sbjct: 46 FKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRN--NRSLEPPSKFIIKVSDINDNAPI 103
Query: 1040 FVKTESKISVYENTTVNTQLFHFQATDSD---IGVNNEVLFSIGSGNKRDTFHMDPVTGI 1096
FV+ SV E + + T + A D+D + + V + I GN + F +D I
Sbjct: 104 FVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN--EYFTVDDSGVI 161
Query: 1097 LYLHKKLDYEEINSYVLNVTASDG 1120
LD E ++Y + V A D
Sbjct: 162 FTARADLDRESQSAYEIIVKAKDA 185
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 746 SDLGNNGFVSYSIIEGNGEDKFGIFP----DGFMYVRNSLDRETRDYYALTVLAEDHGKY 801
S +GN + IIEG E IF DG +Y LDRE + Y LT D +
Sbjct: 26 SSVGNKN--AMYIIEG--ESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDR-RN 80
Query: 802 PRSSSVP--VVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNA 856
RS P +I + D NDN P F F SV E + V K+ A D D V +A
Sbjct: 81 NRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHA 140
Query: 857 ELSFALSNAKGDFEIDSRNGFIKTMRS-FDREN 888
+++ + F +D +G I T R+ DRE+
Sbjct: 141 TVTYQIIKGNEYFTVDD-SGVIFTARADLDRES 172
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 561 FEINDRTGEIITAAKLDREEQSIYNLVVSARSR-----LSYGKTFVNITLLDLNDNAPIF 615
F++ G+I +LDRE+++ Y L R L F+ I + D+NDNAPIF
Sbjct: 46 FKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFI-IKVSDINDNAPIF 104
Query: 616 NRDKDEITIPENAAVGQEIYVARARDRD 643
+ ++PE + +G + A D D
Sbjct: 105 VQKIFNGSVPEMSRLGTSVTKVTAEDAD 132
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 16/102 (15%)
Query: 41 KLDRETVDFYQLN---ISARDGGT---PTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+LDRE Y+L I R+ + P+++ + + D+NDN PIF + ++ S
Sbjct: 60 RLDREKKAEYELTAHIIDRRNNRSLEPPSKF-----IIKVSDINDNAPIFVQKI--FNGS 112
Query: 95 LNESVLPGTKVLQVIATDNDQ---GDNAKITYYLSETERKFT 133
+ E GT V +V A D D +A +TY + + FT
Sbjct: 113 VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEYFT 154
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 1061 HFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDG 1120
H S +G N ++ I + F + G +Y ++LD E+ Y L D
Sbjct: 20 HVGKLTSSVG-NKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDR 78
Query: 1121 GTPR-LSTIFMFTINVEDCNDNPPSF 1145
R L F I V D NDN P F
Sbjct: 79 RNNRSLEPPSKFIIKVSDINDNAPIF 104
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K + DRE + + +I VS NG ++D +++ + +TDQN
Sbjct: 51 GVFIIERETGWLKVTQPLDREAIAK-----YILYSHAVSSNGE-AVEDPMEIVITVTDQN 104
Query: 927 DNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLN 964
DN P+F + ++ ++EGA GT V +VS DAD+ +N
Sbjct: 105 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN 142
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 754 VSYSIIEGNGEDK--FGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSV 807
V YSI G G DK G+F G++ V LDRE Y L A +
Sbjct: 36 VFYSIT-GQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 808 PVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD 851
+VI + D+NDN+PEF+ F SV E P + V K+ ATD D
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 967 VYYKIISGNDDEH----FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSS 1022
V+Y I D+ F I+ TG + +++ LDRE ++K+ +L A + +
Sbjct: 36 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVED 92
Query: 1023 TTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVN 1072
+ I V D+NDN P F + + SV E T + ATD+D VN
Sbjct: 93 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN 142
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+L+ T LDRE + Y L A +++ +T+ D NDN P F V + SV+
Sbjct: 61 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 120
Query: 95 LNESVLPGTKVLQVIATDND 114
E +PGT V++V ATD D
Sbjct: 121 --EGAVPGTSVMKVSATDAD 138
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 345 DEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDSI--------TGQLTVKTKLDRET 396
+EK +F +N++ I + ++T D+ + TG L V LDRE
Sbjct: 14 NEKGEFPKNLVQIKSNRDKETKVFY-SITGQGADKPPVGVFIIERETGWLKVTQPLDREA 72
Query: 397 ITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQV 456
I Y L A + + + D NDN P F + + E G S+++V
Sbjct: 73 IAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKV 132
Query: 457 SAYDLD 462
SA D D
Sbjct: 133 SATDAD 138
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 335 QLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQD 380
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D D D
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD 140
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 557 PKKKFEINDRTGEIITAAKLDREEQS---IYNLVVSARSRLSYGKTFVNITLLDLNDNAP 613
P F I TG + LDRE + +Y+ VS+ + IT+ D NDN P
Sbjct: 49 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGVNS 648
F ++ E ++ E A G + A D D VN+
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 143
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 69 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 128
Query: 280 VAGITATDEDTGVN 293
V ++ATD D VN
Sbjct: 129 VMKVSATDADDDVN 142
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1074 EVLFSI-GSGNKR---DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIF 1129
+V +SI G G + F ++ TG L + + LD E I Y+L A +
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPM 94
Query: 1130 MFTINVEDCNDNPPSF 1145
I V D NDN P F
Sbjct: 95 EIVITVTDQNDNRPEF 110
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 634 IYVARARDRDSGVNSRIFYSLSSNPDDQ-----FKIVETNGVIYLNKPIQSPPGSTLTIE 688
+ + RD+++ ++FYS++ D+ F I G + + +P+ + +
Sbjct: 24 VQIKSNRDKET----KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILY 79
Query: 689 IVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSD 747
A S +++ + + + D ND+ P F +E S+ E ++ A D+D
Sbjct: 80 SHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 980 FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPM 1039
F I+ +GQ++++K LDRE +++F+L+ A D + NQ+ + + I+V+D NDN P
Sbjct: 53 FIINPISGQLSVTKPLDRELIARFHLRAHAVD---INGNQVENPIDIVINVIDMNDNRPE 109
Query: 1040 F 1040
F
Sbjct: 110 F 110
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 341 LDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQ--------DSITGQLTVKTKL 392
L EN P F Q ++ I + +L ++T DQ + I+GQL+V L
Sbjct: 11 LPENSRGP-FPQELVRIRSGRDKNL-SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 393 DRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVF 434
DRE I + L+ A D + + + + D+NDN P F
Sbjct: 69 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 740 ELVAKDSDLGNNGFVSYSIIEGNGEDK--FGIF---P-DGFMYVRNSLDRETRDYYALTV 793
ELV S N + YS+ G G D+ GIF P G + V LDRE + L
Sbjct: 22 ELVRIRSGRDKNLSLRYSV-TGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRA 80
Query: 794 LAEDHGKYPRSSSVPVVIHIIDENDNKPEF 823
A D + + +VI++ID NDN+PEF
Sbjct: 81 HAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 1088 FHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSF 1145
F ++P++G L + K LD E I + L A D ++ INV D NDN P F
Sbjct: 53 FIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>pdb|2X2U|A Chain A, First Two Cadherin-Like Domains From Human Ret
Length = 246
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 754 VSYSIIEGNGEDKFGIFPDGF-MYVRNSLDRETRDYYALTVLAEDH-GKYPRSSSVPVVI 811
V+Y ++EG G F PD + R +LDRE R+ Y L + H G VP +
Sbjct: 174 VAYRLLEGEGL-PFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPV 232
Query: 812 HIIDENDNKPEFSN 825
+ DE+D+ PEF N
Sbjct: 233 TVYDEDDSAPEFEN 246
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 703 HSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELV-----AKDSDLGNNGFVSYS 757
H V + ++D ND++P F SY ++ E TPV F A D D G NG + Y
Sbjct: 111 HEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEY- 169
Query: 758 IIEGNGED-------KFGIFPDGFMYVRNSLDRETRDYYALTVLAEDHGK 800
+I+ N ED + + G + +R L+ E + Y + + A D +
Sbjct: 170 VIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQ 219
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 917 KVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRV-----STMDADEGLNGDVYYKI 971
+V + + D+NDNSP F Y ++E +GT +F D D+G NG + Y I
Sbjct: 112 EVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVI 171
Query: 972 ISGNDD----EHFSID-EATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMV 1026
+D + F I TG + + K L+ E +++ + + A D A ++ + ++TT +
Sbjct: 172 QYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTL 231
Query: 1027 TIDV 1030
T+D+
Sbjct: 232 TVDL 235
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 1026 VTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHF-----QATDSDIGVNNEVLFSIG 1080
V I V D NDN+P F +V E T V T +F ATD D G N ++ + I
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ 172
Query: 1081 SG----NKRDTFHMD-PVTGILYLHKKLDYEEINSYVLNVTASD 1119
DTF + +TG + L K+L+YE+ Y + + A+D
Sbjct: 173 YNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAND 216
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 546 DQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREE-QSIYNLVVSARSRLSYGKTF---- 600
D + Y ++ DP K+ + TG + LDR+ +I+++VV + T
Sbjct: 59 DNVDYWVLL-DPVKQMLFLNSTGRV-----LDRDPPMNIHSIVVQVQCVNKKVGTVIYHE 112
Query: 601 VNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVA-----RARDRDSGVNSRIFYSLS 655
V I + D NDN+P F + T+ E VG I+ A D D G N +I Y +
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ 172
Query: 656 SNPDD 660
NP+D
Sbjct: 173 YNPED 177
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 249 IHVNDVNDHEPVFEKSEYSAVLSELAPAGSYV-AGIT----ATDEDTGVNAQIFYAF 300
I V D ND+ P F+ Y A ++EL P G+ + G + ATD D G N QI Y
Sbjct: 115 IVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVI 171
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 420 VFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQV-----SAYDLDCGKNAQVTYSIE 474
V + + D NDN+P F Y+ + E T VG +I A D+D G N Q+ Y I+
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ 172
Query: 475 SGSE 478
E
Sbjct: 173 YNPE 176
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 34 LYLQTTGK-LDRET-VDFY----QLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHS 87
L+L +TG+ LDR+ ++ + Q+ + GT Y +V + + D NDN P F H
Sbjct: 74 LFLNSTGRVLDRDPPMNIHSIVVQVQCVNKKVGTVI---YHEVRIVVRDRNDNSPTFKH- 129
Query: 88 VSDYSVSLNESVLPGTKVLQVI-----ATDNDQGDNAKITYYLS 126
Y ++NE GT + ATD D G N +I Y +
Sbjct: 130 -ESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ 172
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 809 VVIHIIDENDNKPEFSNSSFVFSVMENLPPDS-----FVGKLIATDKDVGRNAELSFALS 863
V I + D NDN P F + S+ +V E P + F G ATD D G N ++ + +
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQ 172
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 717 PVFDMSSYETSLL--ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-G 773
P F ++T LL E TPV + +L+A+D D N + + + F + PD G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTG 63
Query: 774 FMYVRNSLDRETRDYYALTVLAEDH 798
+++R LDRET+ + + DH
Sbjct: 64 VVWLRQPLDRETKSEFTVEFSVSDH 88
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 622 ITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETN-GVIYLNKPIQSP 680
+ I E+ VG + ARD D N + + +S +F VE + GV++L +P+
Sbjct: 18 LLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 681 PGSTLTIEIVASD 693
S T+E SD
Sbjct: 75 TKSEFTVEFSVSD 87
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 941 ISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV 1000
ISE +G+ V ++ D D N + + + F+++ TG + + + LDRET
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 1001 SKFNLKVLARDAATVVSNQL 1020
S+F ++ D V++ ++
Sbjct: 77 SEFTVEFSVSDHQGVITRKV 96
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 980 FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPM 1039
F ++ TG++ ++ +LDRE F L A DA N + + I VLD NDN P+
Sbjct: 63 FVFNKDTGELNVTSILDREETPFFLLTGYALDAR---GNNVEKPLELRIKVLDINDNEPV 119
Query: 1040 FVK 1042
F +
Sbjct: 120 FTQ 122
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 561 FEINDRTGEIITAAKLDREEQSIYNL---VVSARSRLSYGKTFVNITLLDLNDNAPIFNR 617
F N TGE+ + LDREE + L + AR + I +LD+NDN P+F +
Sbjct: 63 FVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Query: 618 D 618
D
Sbjct: 123 D 123
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAH 86
L T LDRE F+ L A D L++ + +LD+NDN P+F
Sbjct: 72 LNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 760 EGNGEDKFGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIID 815
+G E FGIF G + V + LDRE ++ LT A D + + I ++D
Sbjct: 53 KGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLD 112
Query: 816 ENDNKPEFS 824
NDN+P F+
Sbjct: 113 INDNEPVFT 121
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 37.4 bits (85), Expect = 0.048, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 523 MQENLGRD---VGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDRE 579
++E G D VGK+ +SDM IKY + F I+D TG+I +LDRE
Sbjct: 11 LEEYTGTDPLYVGKL---HSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDRE 67
Query: 580 EQSIYNLVVSARSR 593
E+S Y L A R
Sbjct: 68 ERSQYTLRAQALDR 81
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 958 DADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAAT 1014
D D G +G + Y + F+ID+ TG I + LDRE S++ L+ A D T
Sbjct: 28 DMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRT 83
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain Of
Human T-Cadherin
Length = 105
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 980 FSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAP 1038
F I+E TG +++++ LDRE ++ + L V D V L + + V+D+NDN P
Sbjct: 50 FRINENTGSVSVTRTLDREVIAVYQLFVETTD---VNGKTLEGPVPLEVIVIDQNDNRP 105
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 521 DKMQENLGRDVGKI----KIRNSDMQAT---IDQIKYAIVYGDPKKKFEINDRTGEIITA 573
+ ++ RDVGK+ + S + T +DQ +PK F IN+ TG +
Sbjct: 11 ENQRQPFPRDVGKVVDSDRPERSKFRLTGKGVDQ--------EPKGIFRINENTGSVSVT 62
Query: 574 AKLDREEQSIYNLVVS---ARSRLSYGKTFVNITLLDLNDNAP 613
LDRE ++Y L V + G + + ++D NDN P
Sbjct: 63 RTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 842 VGKLIATDKDVGRNAELSFALSN------AKGDFEIDSRNGFIKTMRSFDRENLLQTTGQ 895
VGK++ +D R F L+ KG F I+ G + R+ DRE + Q
Sbjct: 21 VGKVVDSD----RPERSKFRLTGKGVDQEPKGIFRINENTGSVSVTRTLDREVI--AVYQ 74
Query: 896 NFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSP 930
F+ T NG L+ V ++V + DQNDN P
Sbjct: 75 LFVE---TTDVNGK-TLEGPVPLEVIVIDQNDNRP 105
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 773 GFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKP 821
G + V +LDRE Y L V D VP+ + +ID+NDN+P
Sbjct: 57 GSVSVTRTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPP 82
+ T LDRE + YQL + D T G + + V ++D NDN P
Sbjct: 59 VSVTRTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
>pdb|1ZXK|A Chain A, Crystal Structure Of Cadherin8 Ec1 Domain
pdb|1ZXK|B Chain B, Crystal Structure Of Cadherin8 Ec1 Domain
Length = 98
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 531 VGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSA 590
VG++ ++D+ +IKY + F+IND TG+I +LDREE++ Y L A
Sbjct: 21 VGRL---HTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQA 77
>pdb|1WYJ|A Chain A, Solution Structure Of Mouse Protocadherin Beta 14 (26-137)
Length = 125
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 513 TFSILEDHDK--MQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEI 570
T+S+LE+ D+ + NL +D+G + +R + I+ K+ ++ ++G +
Sbjct: 14 TYSVLEETDRGSLVGNLAKDLG-LSLRELITRGA------QILSKGNKQLLQLEQKSGNL 66
Query: 571 ITAAKLDREE--QSIYNLVVSARSRLSYGKTFVN--ITLLDLNDNAPIFNRDK 619
+ KLDREE S ++ + L F+ I L D+ND+AP F D+
Sbjct: 67 LLKEKLDREELCGSTNPCILHFQVLLKSPVQFIQGEIQLQDVNDHAPEFMEDE 119
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 951 VFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLAR 1010
V +V D EG + K + + F I+E TG +++++ LDRET++ + L V
Sbjct: 22 VGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT 81
Query: 1011 DAA 1013
DA+
Sbjct: 82 DAS 84
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 510 NGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGE 569
+G S + + ++ RDVGK+ + + + + ++ V DPK F IN+ TG
Sbjct: 1 SGIVVSPILIPENQRQPFPRDVGKV-VDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGS 59
Query: 570 IITAAKLDREEQSIYNLVVSARSRLSYGKTF 600
+ LDRE + Y L V + GKT
Sbjct: 60 VSVTRTLDRETIATYQLYVETTD--ASGKTL 88
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 951 VFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLAR 1010
V RV D G +Y K + F I+E +G+++++K LDRE + + L+V
Sbjct: 21 VGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETT 80
Query: 1011 D 1011
D
Sbjct: 81 D 81
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 830 FSVMEN--LPPDSFVGKLIATDKDVGRNAEL--SFALSNAKGDFEIDSRNGFIKTMRSFD 885
S+ EN +P VG+++ +D+ G +L KG F+I+ +G + ++ D
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD 66
Query: 886 RENL------LQTTGQNFISLEATV 904
RE + ++TT +N ++E V
Sbjct: 67 REAIPSYQLQVETTDENGKTIEGPV 91
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 523 MQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQS 582
++E G D + +SD+ + IKY + F I+D++G I LDREE++
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERA 70
Query: 583 IYNLVVSARSR 593
Y L+ A R
Sbjct: 71 QYTLMAQAVDR 81
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQN 926
G F I+ G++K DRE + + VS NG+ ++D +++ + +TDQN
Sbjct: 53 GVFIIERETGWLKVTEPLDRERI-----ATYTLFSHAVSSNGN-AVEDPMEILITVTDQN 106
Query: 927 DN 928
DN
Sbjct: 107 DN 108
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 336 LKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQ------DSITGQLTVK 389
L IL +++P F ++V + E + + D D + I+G ++V
Sbjct: 3 LATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVT 62
Query: 390 TKLDRETITDYELKV 404
LDRE I +YEL+V
Sbjct: 63 RPLDREAIANYELEV 77
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 529 RDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNL-- 586
R VGK+ IR+ + ++ V DPK F IN+ +G++ LDRE + Y L
Sbjct: 19 RSVGKV-IRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEV 77
Query: 587 -VVSARSRLSYGKTFVNITLLD 607
V ++ G ++I+++D
Sbjct: 78 EVTDLSGKIIDGPVRLDISVID 99
>pdb|2HG2|A Chain A, Structure Of Lactaldehyde Dehydrogenase
Length = 479
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 551 AIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSRLSYGKTFVN-------- 602
A+ +G+P ++ +I G +I AA L+R EQ + V +R+++G V
Sbjct: 311 AVQFGNPAERNDIA--MGPLINAAALERVEQKVAR-AVEEGARVAFGGKAVEGKGYYYPP 367
Query: 603 ITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIF 651
LLD+ I + + +P A E ++ A D D G+ S I+
Sbjct: 368 TLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTSSIY 416
>pdb|2IMP|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
Coli: The Ternary Complex With Product Bound (L)-Lactate
And Nadh.
pdb|2ILU|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
Coli: The Binary Complex With Nadph
Length = 479
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 551 AIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSRLSYGKTFVN-------- 602
A+ +G+P ++ +I G +I AA L+R EQ + V +R+++G V
Sbjct: 311 AVQFGNPAERNDIA--MGPLINAAALERVEQKVAR-AVEEGARVAFGGKAVEGKGYYYPP 367
Query: 603 ITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIF 651
LLD+ I + + +P A E ++ A D D G+ S I+
Sbjct: 368 TLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTSSIY 416
>pdb|1WUZ|A Chain A, Structure Of Ec1 Domain Of Cnr
Length = 103
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 825 NSSFVFSVMENLPPDSFVGKLIATDKDVGRN-----AELSFALSNAKGDF-EIDSRNGFI 878
NS +S+ E +FVG++ +D+G L S +GD E++ +NG +
Sbjct: 2 NSQIHYSIPEEAKHGTFVGRIA---QDLGLELTELVPRLFRVASKDRGDLLEVNLQNGIL 58
Query: 879 KTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDN 928
DRE L + + I LE V R V+V + D NDN
Sbjct: 59 FVNSRIDREELCGRSAECSIHLEVIVD-----RPLQVFHVEVEVRDINDN 103
>pdb|2OPX|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From
Escherichia Coli
Length = 479
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 551 AIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSRLSYGKTFVN-------- 602
A+ +G+P ++ +I G +I AA L+R EQ + V +R++ G V
Sbjct: 311 AVQFGNPAERNDIA--MGPLINAAALERVEQKVAR-AVEEGARVALGGKAVEGKGYYYPP 367
Query: 603 ITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIF 651
LLD+ I + + +P A E ++ A D D G+ S I+
Sbjct: 368 TLLLDVRQEMSIMHEETFGPVLPVVAFDTLEEAISMANDSDYGLTSSIY 416
>pdb|1DBP|A Chain A, Identical Mutations At Corresponding Positions In Two
Homologous Proteins With Non-Identical Effects
Length = 271
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 54 ISARDGGTPT--RYGYLQVNVTILDVNDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIAT 111
+S +DG + GY N+ +LD +NP +V D +V GTK+L + T
Sbjct: 17 VSLKDGAQKEADKLGY---NLVVLDSQNNPAKELANVQDLTVR-------GTKILLINPT 66
Query: 112 DNDQGDNA 119
D+D DNA
Sbjct: 67 DSDAVDNA 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,490,747
Number of Sequences: 62578
Number of extensions: 1516154
Number of successful extensions: 3723
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2974
Number of HSP's gapped (non-prelim): 483
length of query: 1186
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1076
effective length of database: 8,089,757
effective search space: 8704578532
effective search space used: 8704578532
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)