Query psy26
Match_columns 1186
No_of_seqs 457 out of 2754
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 20:17:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy26.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/26hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1219|consensus 100.0 1E-147 2E-152 1319.8 126.1 1110 36-1185 697-2821(4289)
2 KOG1219|consensus 100.0 5E-146 1E-150 1305.6 114.3 1106 36-1184 1932-3337(4289)
3 KOG4289|consensus 100.0 2E-125 4E-130 1099.2 77.8 858 78-1185 158-1030(2531)
4 KOG4289|consensus 100.0 2E-122 4E-127 1074.2 76.5 857 15-1135 208-1079(2531)
5 cd00031 CA Cadherin repeat dom 100.0 1.4E-26 3E-31 246.9 29.6 198 937-1137 2-199 (199)
6 cd00031 CA Cadherin repeat dom 99.9 8.4E-26 1.8E-30 240.8 27.5 196 620-815 2-199 (199)
7 PF00028 Cadherin: Cadherin do 99.6 2.7E-14 5.8E-19 131.5 14.6 92 1045-1136 1-93 (93)
8 PF00028 Cadherin: Cadherin do 99.6 6.1E-14 1.3E-18 129.1 14.4 92 937-1031 1-93 (93)
9 smart00112 CA Cadherin repeats 99.5 3.8E-13 8.2E-18 119.6 11.2 79 1065-1143 1-79 (79)
10 KOG1834|consensus 99.4 4.1E-12 8.9E-17 143.2 19.9 206 708-924 22-244 (952)
11 smart00112 CA Cadherin repeats 99.4 7.4E-13 1.6E-17 117.8 10.4 78 640-717 1-79 (79)
12 KOG1834|consensus 99.4 7.1E-12 1.5E-16 141.3 20.3 209 920-1137 21-244 (952)
13 TIGR01965 VCBS_repeat VCBS rep 96.3 0.03 6.4E-07 50.9 9.2 88 739-836 2-98 (99)
14 smart00736 CADG Dystroglycan-t 96.2 0.073 1.6E-06 49.0 11.6 71 1063-1140 23-96 (97)
15 PF08758 Cadherin_pro: Cadheri 96.1 0.049 1.1E-06 49.0 9.6 79 715-800 2-80 (90)
16 PF08266 Cadherin_2: Cadherin- 95.9 0.016 3.5E-07 51.3 5.4 74 828-902 3-80 (84)
17 PF08266 Cadherin_2: Cadherin- 95.8 0.0064 1.4E-07 53.8 2.6 64 512-581 3-67 (84)
18 PF08758 Cadherin_pro: Cadheri 95.7 0.096 2.1E-06 47.1 9.8 77 929-1013 3-79 (90)
19 TIGR01965 VCBS_repeat VCBS rep 95.7 0.11 2.4E-06 47.2 10.0 92 843-945 2-98 (99)
20 smart00736 CADG Dystroglycan-t 95.5 0.19 4.1E-06 46.2 11.4 71 955-1035 23-96 (97)
21 PF13750 Big_3_3: Bacterial Ig 94.8 1.7 3.6E-05 44.0 16.7 128 999-1136 13-148 (158)
22 PF13750 Big_3_3: Bacterial Ig 94.3 2.3 5.1E-05 42.9 16.3 127 681-814 13-148 (158)
23 TIGR00845 caca sodium/calcium 89.0 28 0.00061 44.8 20.5 165 925-1100 395-588 (928)
24 PF05345 He_PIG: Putative Ig d 86.0 2.6 5.7E-05 33.2 5.9 38 1083-1122 11-49 (49)
25 TIGR00845 caca sodium/calcium 86.0 59 0.0013 42.0 20.8 148 816-975 395-570 (928)
26 PF05345 He_PIG: Putative Ig d 76.0 8.9 0.00019 30.2 5.7 36 866-908 13-48 (49)
27 PF13753 SWM_repeat: Putative 71.5 1.9E+02 0.0041 32.9 19.4 132 895-1041 11-147 (317)
28 TIGR00864 PCC polycystin catio 68.7 5.8E+02 0.013 37.5 88.4 121 1000-1133 2221-2355(2740)
29 PF02010 REJ: REJ domain; Int 68.1 9.1 0.0002 46.0 6.3 123 895-1033 272-401 (440)
30 TIGR03660 T1SS_rpt_143 T1SS-14 65.7 43 0.00094 32.9 9.1 71 16-99 55-128 (137)
31 KOG3597|consensus 65.3 2.9E+02 0.0064 32.8 25.8 164 805-976 24-197 (442)
32 PF02010 REJ: REJ domain; Int 64.1 8.2 0.00018 46.4 4.9 261 896-1185 50-339 (440)
33 PF03160 Calx-beta: Calx-beta 60.7 1.1E+02 0.0024 27.9 10.7 53 1027-1083 2-54 (100)
34 TIGR03660 T1SS_rpt_143 T1SS-14 60.6 72 0.0016 31.3 9.7 55 990-1053 71-128 (137)
35 PF07495 Y_Y_Y: Y_Y_Y domain; 59.4 93 0.002 25.7 9.2 61 853-923 5-66 (66)
36 PF13753 SWM_repeat: Putative 58.4 3.2E+02 0.007 31.0 18.6 111 581-698 11-126 (317)
37 PF07495 Y_Y_Y: Y_Y_Y domain; 55.3 95 0.0021 25.7 8.6 59 1072-1135 7-65 (66)
38 KOG3597|consensus 43.4 6.4E+02 0.014 30.1 29.1 155 701-866 24-196 (442)
39 KOG4221|consensus 35.8 1.3E+03 0.027 31.2 65.1 123 581-718 493-620 (1381)
40 PF03160 Calx-beta: Calx-beta 32.1 3.9E+02 0.0084 24.2 11.5 51 810-864 2-52 (100)
41 KOG4221|consensus 31.1 1.5E+03 0.032 30.6 52.9 240 557-822 371-620 (1381)
42 cd02848 Chitinase_N_term Chiti 23.8 1.3E+02 0.0029 27.9 4.5 34 994-1032 73-106 (106)
43 cd00146 PKD polycystic kidney 23.2 1.4E+02 0.0031 25.8 4.6 31 995-1030 51-81 (81)
44 cd00146 PKD polycystic kidney 23.0 1.5E+02 0.0033 25.6 4.8 31 1103-1135 51-81 (81)
45 cd02848 Chitinase_N_term Chiti 22.0 1.5E+02 0.0032 27.7 4.3 34 1102-1137 73-106 (106)
46 PF12245 Big_3_2: Bacterial Ig 21.8 2.8E+02 0.006 22.8 5.7 31 999-1034 21-51 (60)
47 smart00089 PKD Repeats in poly 20.6 1.8E+02 0.0038 25.0 4.7 31 1102-1135 48-78 (79)
48 PF12245 Big_3_2: Bacterial Ig 20.4 2.9E+02 0.0063 22.7 5.5 30 224-255 22-51 (60)
No 1
>KOG1219|consensus
Probab=100.00 E-value=1e-147 Score=1319.82 Aligned_cols=1110 Identities=30% Similarity=0.450 Sum_probs=1024.3
Q ss_pred EEEccCCccccccEEEEEEEEEECCcCCeEEEEEEEEEEEecCCCCCccccCCCeeEEEEeCCCCCCcEEEEEEEEeCCC
Q psy26 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQ 115 (1186)
Q Consensus 36 l~~~~~LD~E~~~~y~l~v~a~D~~~~~~~~~~~v~i~V~DvND~~P~f~~~~~~y~~~v~E~~~~gt~v~~v~A~D~D~ 115 (1186)
|.+.++||+|.+..|+|.|+|-|.|+|..++...+.|.|.|.|||+|.|.+ -.|.++|+|+..+|+.|++|.|.|.|.
T Consensus 697 itvas~ld~~~t~~yiLnvta~D~gtPqkss~r~l~v~vkd~ndn~p~f~e--~sy~vtvsedtepgs~Ia~vetnd~D~ 774 (4289)
T KOG1219|consen 697 ITVASPLDNENTEQYILNVTAYDLGTPQKSSWRLLLVFVKDYNDNTPIFVE--RSYHVTVSEDTEPGSFIAHVETNDTDG 774 (4289)
T ss_pred EEEecchhhhhhheeEEEEEEecCCCchhhceeeEEEEEEecccCCccccc--cceEEEEecCCCCCceEEEEEecccCC
Confidence 677889999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred CCCcEEEEEEeccCcceeecccc-------CCCCCCCceEEEEEEEEeCCCCCCeeeEEEEEEEEeCCCCCCeeeeeecC
Q psy26 116 GDNAKITYYLSETERKFTNCQQQ-------RPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFP 188 (1186)
Q Consensus 116 g~n~~i~y~l~~~~~~F~~~~~~-------~~~~e~~~~~~l~V~a~D~g~p~~~~~~~v~i~v~d~nd~~p~~~~~~~~ 188 (1186)
|.||.++|+|.+....|++++.+ .+++|.+..|.|.|+|+|++.|.+.+.+.+.|.|.|||||||.+-..
T Consensus 775 g~NG~v~fsL~n~sdvfsIdp~tGivv~~~sLdrE~q~~y~l~I~a~dqp~pq~~svv~l~vsvedVndnpPkci~~--- 851 (4289)
T KOG1219|consen 775 GNNGMVSFSLLNKSDVFSIDPFTGIVVTSKSLDREGQTSYHLKIEARDQPPPQLFSVVELDVSVEDVNDNPPKCIIR--- 851 (4289)
T ss_pred CCCceEEEEecCCcceEEecCcccEEEeccccCcccCceeEEEEEEcCCCCCceEEEEEEEEEEeeccCCCCccccc---
Confidence 99999999999988889977754 56999999999999999999999999999999999999999997543
Q ss_pred CCceeEEEeCCCCCCcEEEEEEEECCCCCCC-----------------------------CcccCceEEEEEEEEeCCCC
Q psy26 189 STAGFATVDENAINGSVVAAVSVVDPDEGLN-----------------------------DREHINKYNLTIIATDKGNP 239 (1186)
Q Consensus 189 ~~~~~~~v~E~~~~g~~v~~v~~~D~D~g~~-----------------------------D~E~~~~y~l~v~a~D~g~p 239 (1186)
++...|+|+.|.|+++..+.|.|+|.|.+ |+|+.+-|+|.|+|.|+|.|
T Consensus 852 --hsr~kipedlp~gt~~~~l~A~d~diGq~~kvry~l~~~~v~~rvd~~sGavfi~~~LDf~k~~fynLsv~a~d~g~p 929 (4289)
T KOG1219|consen 852 --HSRSKIPEDLPYGTVTWQLVALDPDIGQLGKVRYYLTDDTVGERVDFPSGAVFIGKPLDFEKSDFYNLSVTAVDRGTP 929 (4289)
T ss_pred --cccccCcccCCCceEEEEhhhcCcccCcCceeEEEEecCccccccccccccEEEecccccccccceEEEEEEecCCCc
Confidence 34578999999999999999999999876 99999999999999999999
Q ss_pred CeeEEEEEEEEEeecCCC--CCeecCCeeEEEEeccCCCCcEEEEEEEEeCCCCCCceEEEEEEeCCCCcCEEEcCCCCe
Q psy26 240 PRTATAFLIIHVNDVNDH--EPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGL 317 (1186)
Q Consensus 240 ~~~~~~~v~I~V~dvND~--~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~i~y~i~~~~~~~~F~I~~~tG~ 317 (1186)
.+++.|.+.|.|+|+|.| ||.|..-.-+++|.||+|+|+.|++|+|.|.|.|..+.|+|+|..|...+.|+||..+|.
T Consensus 930 ~lss~chl~Vevldv~enlhpp~F~~~v~e~~V~EnapiGT~vi~i~A~dedsgldg~l~Y~I~~gdg~g~FsId~~tG~ 1009 (4289)
T KOG1219|consen 930 ILSSICHLEVEVLDVNENLHPPEFISFVTEGHVLENAPIGTIVIRIQARDEDSGLDGELSYKIRTGDGDGIFSIDSTTGS 1009 (4289)
T ss_pred ceeeeEEEEEEEeccCCCCCCcchheeeeeeeEeecCCcceEEEEEEEecCCCCccceEEEEEEcCCcceeEEecCCcce
Confidence 999999999999999877 999999989999999999999999999999999999999999999988899999999999
Q ss_pred EEEE----------------EeeCCCCCceEEEEEEEEEEecCCCCCcccccceEEEEecCCCCCcEEEEEEEeeCCC--
Q psy26 318 ITTK----------------TRDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQ-- 379 (1186)
Q Consensus 318 i~~~----------------a~D~~~~~~~~~~~v~v~v~d~nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~-- 379 (1186)
|++. |+|.|..++++.+.+.|.|.|+|||+|+|.++.|-.+|.||+|.+..|.++.|.|+|.
T Consensus 1010 irTl~~lDrE~ks~YwltveA~D~gt~~~ssv~~vyI~ieDvNDn~Pq~s~pvy~asI~enSp~~vsivq~ea~D~Dsss 1089 (4289)
T KOG1219|consen 1010 IRTLKALDREKKSSYWLTVEAKDLGTVPLSSVCEVYIEIEDVNDNVPQFSSPVYYASISENSPETVSIVQAEANDPDSSS 1089 (4289)
T ss_pred EeechhhchhhcceEEEEEEEEecCCCccccceeEEEEEEecCCCCcccCCceEeeeeccCCCCceEEEEeccCCCCccc
Confidence 9876 8999999999999999999999999999999999999999999999999999999995
Q ss_pred -------------------CCCceeEEEcccCCCCCCceEEEEEEEEeCCCCCceEEEEEEEEEEecCCCCcccCCCceE
Q psy26 380 -------------------DSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYF 440 (1186)
Q Consensus 380 -------------------d~~tG~l~~~~~lD~E~~~~y~l~v~a~D~g~p~~s~~~~v~I~V~DvNDn~P~F~~~~y~ 440 (1186)
++.+|.|+..+.||||.+.++.|.|..+|+|.|.+++.+.|.|.|+|+|||+|.|.+..|.
T Consensus 1090 n~kLmykI~sGnyq~FF~Id~~TG~iTt~r~LDRE~qdEHiLeVTi~D~gep~l~s~~rviV~IldvNdnsp~Flqk~~~ 1169 (4289)
T KOG1219|consen 1090 NQKLMYKITSGNYQGFFQIDPETGLITTIRRLDREKQDEHILEVTIQDNGEPWLCSNQRVIVSILDVNDNSPRFLQKKTF 1169 (4289)
T ss_pred CcceEEEEccCCccceEEEccccceeeeehhhcccccccceEEEEEecCCCCccccceEEEEEEeeccCCchhhhhheeE
Confidence 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCeEEEEEEEEeCCCCCCceEEEEEecCCc------------------------------------------
Q psy26 441 KQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE------------------------------------------ 478 (1186)
Q Consensus 441 ~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~i~~~~~------------------------------------------ 478 (1186)
..|+|-..+ .+.++.|+|.|+|.|++|+|+|..+.+
T Consensus 1170 ~~v~~r~s~--plyRl~a~d~DeG~narityniedgde~FsID~~t~vVsss~~~~~~eydi~~Ikatd~g~pq~sa~tr 1247 (4289)
T KOG1219|consen 1170 LRVPERSSP--PLYRLAAQDNDEGNNARITYNIEDGDEVFSIDIATGVVSSSTLDPAGEYDILGIKATDRGAPQASAGTR 1247 (4289)
T ss_pred EEeeeccCC--ceeEEEEEecCCCcceEEEEecccCceEEEEeccCceEEeeeccCCcceeEeeEEEecCCCCcccceeE
Confidence 999998875 899999999999999999999988754
Q ss_pred --------------------------------------------------------------------------------
Q psy26 479 -------------------------------------------------------------------------------- 478 (1186)
Q Consensus 479 -------------------------------------------------------------------------------- 478 (1186)
T Consensus 1248 l~lt~~s~p~~ssep~~fee~f~~~~vse~d~V~~mVg~isve~~~gl~lW~nis~gd~Ds~fdv~k~TG~i~~ak~ld~ 1327 (4289)
T KOG1219|consen 1248 LHLTWISGPSESSEPVNFEEEFVDFTVSEDDPVMHMVGVISVEEVPGLMLWFNISGGDVDSIFDVAKNTGNITFAKPLDK 1327 (4289)
T ss_pred EEEEecCCCCcCCCcccccceeEEEEEecCcchhheeeeeeccCCCCcceeEeccCCCccceeeeccCcccEEEeeehhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy26 479 -------------------------------------------------------------------------------- 478 (1186)
Q Consensus 479 -------------------------------------------------------------------------------- 478 (1186)
T Consensus 1328 l~Rsn~nltVsvtdG~~ti~tqV~i~vs~~n~~rPkfs~shyet~vse~ta~gteI~~~~ai~q~~g~kLiynl~sv~d~ 1407 (4289)
T KOG1219|consen 1328 LWRSNYNLTVSVTDGQATIHTQVLIQVSEQNEHRPKFSLSHYETSVSEDTAPGTEILPAHAIDQDSGVKLIYNLSSVKDP 1407 (4289)
T ss_pred hhhcccceEEEeccCcceeeeEEEEEeehhhcCCCcchheeeEeecCCccCCceEEEeeeecCCccCCceeEeeccccCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy26 479 -------------------------------------------------------------------------------- 478 (1186)
Q Consensus 479 -------------------------------------------------------------------------------- 478 (1186)
T Consensus 1408 ~~~~k~qldpssg~l~t~ekLd~ea~~~~h~mVr~Q~~~mknFa~~~inv~d~ndh~prFt~~~~~a~v~es~avgtvl~ 1487 (4289)
T KOG1219|consen 1408 NSKTKFQLDPSSGLLPTQEKLDNEAARRIHVMVRDQNSPMKNFAMTLINVYDSNDHSPRFTTNNYLALVSESHAVGTVLL 1487 (4289)
T ss_pred cchhceEEcCCccceeeehhhcccccccceeEEeeccCCccceEEEEEEeccCCCCCceeecceeEEEeccccCCCceEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy26 479 -------------------------------------------------------------------------------- 478 (1186)
Q Consensus 479 -------------------------------------------------------------------------------- 478 (1186)
T Consensus 1488 qVtA~dkdRG~Naiv~Ysi~sgnie~F~Ida~~Gei~lak~ld~~nhae~~L~vkaid~~sp~~~d~asv~I~v~~~~~~ 1567 (4289)
T KOG1219|consen 1488 QVTAEDKDRGENAIVYYSIGSGNIELFKIDADLGEIILAKRLDELNHAERNLNVKAIDAGSPKGIDKASVTIEVIEDDLI 1567 (4289)
T ss_pred EEEEeccccCcceEEEEEEecCceeeeEeccccceEEeehhhhhhcccccceeeeeeeccCCcccceeEEEEEecccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy26 479 -------------------------------------------------------------------------------- 478 (1186)
Q Consensus 479 -------------------------------------------------------------------------------- 478 (1186)
T Consensus 1568 ~pkF~~s~yfv~lpeS~~~gSpig~v~a~~~s~Vtyel~d~~t~~~f~~~~~sg~ii~qk~ld~e~~~s~~~~i~gtn~a 1647 (4289)
T KOG1219|consen 1568 LPKFDQSEYFVELPESFNSGSPIGKVPADSDSDVTYELIDGNTYVRFFENFVSGHIITQKLLDLEHRKSYFLDIKGTNMA 1647 (4289)
T ss_pred cccccccceEEeCCCcCCCCCeeEEEeccCCCceEEEEecCCcceeEEEeeecceeeehhhccccccceEEEEEEEeecc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy26 479 -------------------------------------------------------------------------------- 478 (1186)
Q Consensus 479 -------------------------------------------------------------------------------- 478 (1186)
T Consensus 1648 G~~t~~~vvv~ii~en~nsp~fr~~ey~g~IsEnapigS~vl~k~n~PlVi~a~d~d~~sn~ll~YriveP~~~~~f~ID 1727 (4289)
T KOG1219|consen 1648 GKLTAPIVVVLIIDENDNSPEFRENEYMGEISENAPIGSSVLSKSNLPLVISAVDGDKPSNDLLVYRIVEPTCGQMFLID 1727 (4289)
T ss_pred ccccCcEEEEEEeccccCChHHhhhhheeeecccCcccceeecccCCceeEEeeccCCCCCceeEEEEecccccceEEEc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy26 479 -------------------------------------------------------------------------------- 478 (1186)
Q Consensus 479 -------------------------------------------------------------------------------- 478 (1186)
T Consensus 1728 ~s~GaIrt~~sfDyE~ts~f~F~vq~~dmg~P~~~a~rpanv~i~ViDvND~pPrf~~~~~eis~~lpt~~gvev~~v~A 1807 (4289)
T KOG1219|consen 1728 QSEGAIRTVTSFDYENTSEFSFYVQVHDMGEPSLFALRPANVLIHVIDVNDNPPRFLNAPYEISVYLPTNYGVEVEDVDA 1807 (4289)
T ss_pred ccCCeEEEEEEeccccCcceeEEEEEEecCCCcccccccccEEEEEEecCCCCCcccCCcceEEEEccCCCCceEeeccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy26 479 -------------------------------------------------------------------------------- 478 (1186)
Q Consensus 479 -------------------------------------------------------------------------------- 478 (1186)
T Consensus 1808 ~d~Dssl~YsIkdgn~~~~fsid~kTG~isv~n~~~l~~sf~ltirasDgr~~~~~~vKIs~~~~~ds~lkFtqd~y~aa 1887 (4289)
T KOG1219|consen 1808 IDSDSSLRYSIKDGNVFENFSIDDKTGVISVNNSNILNESFNLTIRASDGRPPFSYVVKISKVHFDDSTLKFTQDVYLAA 1887 (4289)
T ss_pred eeccceeEEEEeccccccceEeecCcceEEecccccccccceEEEEEeCCCCCcceEEEEEEEEeecceEEEEhhheeeh
Confidence
Q ss_pred -----------------------------------------------------------------cccCCCccccceEEE
Q psy26 479 -----------------------------------------------------------------AVDGGNRKATENAIV 493 (1186)
Q Consensus 479 -----------------------------------------------------------------a~d~~~~~~~~~~~v 493 (1186)
|.+...++..+.+.|
T Consensus 1888 v~en~te~~~~~ii~avg~~in~~l~y~ilnp~~~FkI~p~tGViqt~gtp~dReqsdi~~lvVqais~~k~~rva~~lV 1967 (4289)
T KOG1219|consen 1888 VKENDTEFWMLFIIEAVGMLINSELVYWILNPQIGFKIDPITGVIQTSGTPFDREQSDIAKLVVQAISYDKPPRVAFCLV 1967 (4289)
T ss_pred hhcccccccceeeeehhcccccceeEEEEecCccceEEccccceEecCCcCCCchhhhhhheeeEeeeccCCceeEEEEE
Confidence 444556666777888
Q ss_pred EEEEcccccccceeeccceEEEEcccccccccCCCceEEEEEEEcCCCcccc----------------------------
Q psy26 494 EIIKNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATI---------------------------- 545 (1186)
Q Consensus 494 ~i~~~~~~~~~~~~~~~~~~~~v~e~~~~~~~~~g~~v~~v~~~d~d~~~~~---------------------------- 545 (1186)
.|.+.+.|++.|+|....|.+.|.|.. ..|+.++++.+.|.|.++..
T Consensus 1968 ~V~ied~ndn~pvf~n~py~~~I~~~t-----d~gtvv~~v~a~d~dlnG~V~~i~~edyeyF~I~plG~I~l~kpld~e 2042 (4289)
T KOG1219|consen 1968 HVDIEDFNDNTPVFSNLPYYFNISETT-----DRGTVVGKVVALDADLNGSVFYIQDEDYEYFTISPLGTISLKKPLDFE 2042 (4289)
T ss_pred EEehhhcccCCceEeCCceEEEEeccC-----CCceEEEEEEEecCCCCccEEEEecCcceeEEecCCcceEecCccchh
Confidence 888999999999999999999999988 78888888777765542100
Q ss_pred -----------------------------------------------------------------ceEEEEEEeCCCCCc
Q psy26 546 -----------------------------------------------------------------DQIKYAIVYGDPKKK 560 (1186)
Q Consensus 546 -----------------------------------------------------------------~~i~y~i~~g~~~~~ 560 (1186)
..+.|+|..|+ ...
T Consensus 2043 ~ln~y~fkviAkd~gs~~~~eviV~vtv~nka~PvF~~~~y~avi~e~~tv~spvv~vqa~s~l~~kv~YsIldg~-~sl 2121 (4289)
T KOG1219|consen 2043 NLNKYRFKVIAKDGGSVHRVEVIVHVTVENKAAPVFITPDYVAVIEELITVSSPVVHVQAASPLGLKVTYSILDGN-TSL 2121 (4289)
T ss_pred hcceeEEEEEEcCCCceeeeEEEEEEEEecCCCcceecCcEEEEeecccccccceeEEeecCCcCCceEEEEecCC-cce
Confidence 13678998888 789
Q ss_pred eEEeCCccEEEeCccCCcccccEEEEEEEEEeC--CceeEEEEEEEEEeCCCCCCeecCCCCCcccCCCCCCCcEEEEEE
Q psy26 561 FEINDRTGEIITAAKLDREEQSIYNLVVSARSR--LSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVAR 638 (1186)
Q Consensus 561 F~Id~~tG~i~~~~~LD~E~~~~~~l~V~a~d~--~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~V~E~~~~gt~v~~v~ 638 (1186)
|++|-.||.|.+..+||||....|.|.|+|+|. +..++++|.|.|.|+|||+|+|.+..|.++++|++++|+.+.++.
T Consensus 2122 Ftvnf~TG~i~v~~pLd~ea~t~h~l~ieAtd~~~p~~Aea~VeIiV~dIndn~PvFeqlsYt~sisE~s~igt~viqil 2201 (4289)
T KOG1219|consen 2122 FTVNFTTGVILVLIPLDREASTLHELLIEATDAGIPLSAEAKVEIIVGDINDNPPVFEQLSYTISISENSKIGTKVIQIL 2201 (4289)
T ss_pred EEEecccceEEeccccccccccceEEEEEEeccCCCcceeeEEEEEecccCCCCchhheeeEEEEccCCCccCceEEEEE
Confidence 999999999999999999999999999999992 477899999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCceEEEEEecC--CCCCeEEEceecEEEEcccCCCCCccEEEEEEEEEeCCCCceeeEEEEEEEEEecCCCC
Q psy26 639 ARDRDSGVNSRIFYSLSSN--PDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHT 716 (1186)
Q Consensus 639 a~D~D~~~n~~v~ysl~~~--~~~~F~id~~tG~i~~~~~ld~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~DvND~~ 716 (1186)
|+|.|+ |..+.|+|.++ -...|+|+..||+|++.+.||||++..|.|.|+|+|+|.| +++.+.|.|.|.|+|||+
T Consensus 2202 ATdsDs--n~~isYsl~g~s~~sk~f~In~sTG~it~~g~ldyE~~q~f~~fvratdggk~-lSseviv~V~VeD~Ndn~ 2278 (4289)
T KOG1219|consen 2202 ATDSDS--NREISYSLEGNSEISKPFRINVSTGWITVAGKLDYEENQEFRFFVRATDGGKP-LSSEVIVEVHVEDFNDNP 2278 (4289)
T ss_pred eccCCC--CCceEEEeecCCccccceEEecccceEEEeeecChhhcceEEEEEEEccCCCc-ccccEEEEEEehhcCCCC
Confidence 999997 89999999974 3468999999999999999999999999999999999998 999999999999999999
Q ss_pred CccCCceeEEEEecCCCCCcEEEEEEEecCCCCCCeeEEEE----------------------------E----------
Q psy26 717 PVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYS----------------------------I---------- 758 (1186)
Q Consensus 717 P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~n~~i~ys----------------------------i---------- 758 (1186)
|.|.+..|...|+|.+..|..|..+.|.|+|......+.|. +
T Consensus 2279 Pef~q~~~ea~vsd~a~~g~fit~v~a~D~Dssd~lk~ey~~~~~l~~s~~G~iTlfNl~k~~l~~s~~lrv~vsD~v~~ 2358 (4289)
T KOG1219|consen 2279 PEFNQRNYEAFVSDPARSGHFITVVNAHDLDSSDHLKLEYNSNHFLILSENGIITLFNLLKSPLQTSYPLRVTVSDGVFR 2358 (4289)
T ss_pred chhccccceeecCCCccceeEEEEEEeccCCccchhhhhhcccceeeeccCceEEehhhcccccccccceeeeeccCcce
Confidence 99999999999999999999999999999997432222222 0
Q ss_pred ------------------------------------------------EeCCCCCceEEccceEEEEeecccccCCCeEE
Q psy26 759 ------------------------------------------------IEGNGEDKFGIFPDGFMYVRNSLDRETRDYYA 790 (1186)
Q Consensus 759 ------------------------------------------------~~~~~~~~F~i~~~G~i~~~~~lD~E~~~~~~ 790 (1186)
...-....|.|++.|.|.+.+.||||....+.
T Consensus 2359 at~~vl~~~~~~n~~~~lveka~l~Tv~~~~~~~~~~f~~~gt~~~~si~s~~sd~~~in~~GqI~t~~kld~e~s~~~v 2438 (4289)
T KOG1219|consen 2359 ATMEVLFHPHSRNHFSELVEKADLVTVVEHDEQEDADFGAYGTSIYYSINSRASDHFEINKSGQIKTLSKLDREYSEELV 2438 (4289)
T ss_pred eeeEEEEEecCcccchhhhhccceeEEEEecCccccccccCCceeeeeechhccCceeECCCccEEeeehhhhccCceEE
Confidence 00111235888889999999999999988776
Q ss_pred EEEE--EEECCCCCceeeEeEEEEEeeCCCCCCeeeccceEEEEecCCCCCceEEEEEEEeCCCCCceEEEEEecCCC--
Q psy26 791 LTVL--AEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAK-- 866 (1186)
Q Consensus 791 l~V~--a~D~~~~~~s~~~~v~I~V~dvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~g~n~~l~y~l~~~~-- 866 (1186)
+.+. |.|+++ +.+.++++|.+.|+|||||.|....|.++|.|++..|..|+++.|+|.|.|.|+.++|.+.++.
T Consensus 2439 i~i~v~a~Da~g--r~af~tvti~ltDiNDnpPqF~a~~Y~~nI~enaskg~~V~~v~A~D~De~snadvty~i~~e~~~ 2516 (4289)
T KOG1219|consen 2439 IIIAVMAFDAGG--RVAFCTVTIILTDINDNPPQFDAQLYRVNITENASKGKLVGHVIARDADEGSNADVTYEIVGESDV 2516 (4289)
T ss_pred EEEEEEEecCCC--eEEEEEEEEEEEecCCCCccccceeEEEEeecccCCCceEEEEEEecCCCCCcccEEEEecCchhh
Confidence 6555 559887 8899999999999999999999999999999999999999999999999999999999999874
Q ss_pred -CCeEEccCCceEEEeeccccccccccCCceEEEEEEEEEeCCCCCceeEEEEEEEEecCCCCCCccccCCceEEeecCC
Q psy26 867 -GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGA 945 (1186)
Q Consensus 867 -~~F~Id~~tG~i~~~~~ld~e~~~~~~~~~~~~l~v~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~ 945 (1186)
..|.|++ +|.|++.+.|++++ ...|.|.|.|.|+|.|.+.+.++|.|+|.+...+.|.|..+.|.++++|+.
T Consensus 2517 ~~v~~in~-sG~Itv~~sL~~~e------n~tl~l~vkA~D~g~P~~~s~ttV~v~vl~e~v~lPrFSep~y~fsvpEDv 2589 (4289)
T KOG1219|consen 2517 KHVFEINE-SGVITVKRSLDGLE------NSTLHLFVKAIDDGKPRRRSNTTVIVTVLPEDVNLPRFSEPIYTFSVPEDV 2589 (4289)
T ss_pred hheeeecC-CceEEeehhhhccc------CcEEEEEEEeccCCCCCcccceEEEEEecCcccCcccccCceEEEeccccC
Confidence 4588888 99999999999998 799999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEecCCCCCCCcEEEEEeeC-----CCCCcEEEECCCcEEEEccccCcccccEEEEEEEEEECCcccCCCc
Q psy26 946 SIGTQVFRVSTMDADEGLNGDVYYKIISG-----NDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQL 1020 (1186)
Q Consensus 946 ~~gt~v~~v~a~D~D~~~n~~v~y~i~~g-----~~~~~F~Id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~~~~~~~~~ 1020 (1186)
++|..|++|+|.|.|. .+-|++.-| +....|++|++||.|.+.++||+|....|++.|.|++++ ..
T Consensus 2590 ~vG~~Ig~v~a~~a~~----~~i~~~v~~gt~Esn~d~~Fsvdr~TG~i~v~ksLD~E~kk~yqi~v~a~~~~-----~v 2660 (4289)
T KOG1219|consen 2590 PVGEEIGQVSASDADE----HVIYSLVLGGTPESNPDLPFSVDRNTGMIKVNKSLDHEKKKSYQIKVKATCGQ-----WV 2660 (4289)
T ss_pred CCCCeeeEEeecccCC----ceEEEEEeCCCCCCCCCCceEEcCCCceEEeccccchhhhceEEEEEEeecCC-----ce
Confidence 9999999999999985 356666543 344569999999999999999999999999999999998 56
Q ss_pred eeEEEEEEEEEeCCCCCCcccCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCcEEEEEEeeCCCCCcEEEeCCccEEEEc
Q psy26 1021 SSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLH 1100 (1186)
Q Consensus 1021 s~~~~v~I~V~dvNDn~P~f~~~~~~~~V~E~~~~g~~v~~v~A~D~D~g~~~~v~y~i~~g~~~~~F~id~~tG~l~~~ 1100 (1186)
-+.+.|.|.|.|+|||+|+|..+.|.+.+.||++.|+.|++++|+|.|.|.||+++|+|.+... +|.|++.+|||++.
T Consensus 2661 va~tsv~vqVkDvNDNaPvFe~d~y~f~i~En~pvGtsV~qf~AsD~Ds~~nGqirysl~~~v~--yF~In~etGwlTt~ 2738 (4289)
T KOG1219|consen 2661 VAETSVFVQVKDVNDNAPVFEKDPYLFIIEENSPVGTSVIQFHASDMDSGNNGQIRYSLTSPVP--YFAINPETGWLTTL 2738 (4289)
T ss_pred EEEEEEEEEeecccCCCccccCCceeEEEeccCCCCceEEEEEeeccCCCCCceEEEEEcCCcc--eEEEcCCCCeeeeh
Confidence 7889999999999999999999999999999999999999999999999999999999987533 99999999999999
Q ss_pred ccCCcccccEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCccCCCceEEEEecCCCCCcEEEEEEEeeCCCCCCceE
Q psy26 1101 KKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINTINVPITFKKLKKKKKKKM 1180 (1186)
Q Consensus 1101 ~~ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~n~~~ 1180 (1186)
..||.|.+..|+|.|+|+|.|.| ++.++|.|.|.|+||++|+|....|..++.|+.+.|.++..++..|+|..++.+.
T Consensus 2739 ~eld~ek~d~y~lkv~AtDhG~~--ssq~~v~v~vtDvndspprf~~eiy~gtvv~d~p~~~~ia~~si~d~D~s~~nq~ 2816 (4289)
T KOG1219|consen 2739 FELDLEKQDLYSLKVVATDHGVP--SSQATVLVHVTDVNDSPPRFQREIYEGTVVEDVPGGKIIAGLSIFDADVSEVNQV 2816 (4289)
T ss_pred hhhccccCCceEEEEEEecCCcc--cccceEEEEEEecCCCcchhhhHhhccceeccCCCCceeeeeEecccccccccee
Confidence 99999999999999999999996 7888999999999999999999999999999999999999999999999887789
Q ss_pred EEEeC
Q psy26 1181 LCSSG 1185 (1186)
Q Consensus 1181 ~y~i~ 1185 (1186)
+|.|.
T Consensus 2817 t~fI~ 2821 (4289)
T KOG1219|consen 2817 TGFIT 2821 (4289)
T ss_pred EEEEe
Confidence 98874
No 2
>KOG1219|consensus
Probab=100.00 E-value=4.6e-146 Score=1305.63 Aligned_cols=1106 Identities=31% Similarity=0.412 Sum_probs=1017.4
Q ss_pred EEEcc-CCccccccEEEEEEEEEECCcCCeEEEEEEEEEEEecCCCCCccccCCCeeEEEEeCCCCCCcEEEEEEEEeCC
Q psy26 36 LQTTG-KLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIATDND 114 (1186)
Q Consensus 36 l~~~~-~LD~E~~~~y~l~v~a~D~~~~~~~~~~~v~i~V~DvND~~P~f~~~~~~y~~~v~E~~~~gt~v~~v~A~D~D 114 (1186)
|++.+ ++|||+++.+.|.|+|.+...|++.+.+.|.|.|.|+|||+|+|.+ .+|.+.|.|.+.+|+.|+++.|.|+|
T Consensus 1932 iqt~gtp~dReqsdi~~lvVqais~~k~~rva~~lV~V~ied~ndn~pvf~n--~py~~~I~~~td~gtvv~~v~a~d~d 2009 (4289)
T KOG1219|consen 1932 IQTSGTPFDREQSDIAKLVVQAISYDKPPRVAFCLVHVDIEDFNDNTPVFSN--LPYYFNISETTDRGTVVGKVVALDAD 2009 (4289)
T ss_pred EecCCcCCCchhhhhhheeeEeeeccCCceeEEEEEEEehhhcccCCceEeC--CceEEEEeccCCCceEEEEEEEecCC
Confidence 56655 9999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred CCCCcEEEEEEeccCcceeecccc------CCCCCCCceEEEEEEEEeCCCCCCeeeEEEEEEEEeCCCCCCeeeeeecC
Q psy26 115 QGDNAKITYYLSETERKFTNCQQQ------RPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFP 188 (1186)
Q Consensus 115 ~g~n~~i~y~l~~~~~~F~~~~~~------~~~~e~~~~~~l~V~a~D~g~p~~~~~~~v~i~v~d~nd~~p~~~~~~~~ 188 (1186)
. ||.+.|...+.-.+|++.+.+ .+++|.-..|.|+|.|.|+|+ .-.+.+.|.|.++|+..|.|...
T Consensus 2010 l--nG~V~~i~~edyeyF~I~plG~I~l~kpld~e~ln~y~fkviAkd~gs---~~~~eviV~vtv~nka~PvF~~~--- 2081 (4289)
T KOG1219|consen 2010 L--NGSVFYIQDEDYEYFTISPLGTISLKKPLDFENLNKYRFKVIAKDGGS---VHRVEVIVHVTVENKAAPVFITP--- 2081 (4289)
T ss_pred C--CccEEEEecCcceeEEecCCcceEecCccchhhcceeEEEEEEcCCCc---eeeeEEEEEEEEecCCCcceecC---
Confidence 8 999999888777799988843 447887777999999999997 34567888889999999998654
Q ss_pred CCceeEEEeCCCCCCcEEEEEEEE-CCCCC--------------------------CCCcccCceEEEEEEEEeCCCCCe
Q psy26 189 STAGFATVDENAINGSVVAAVSVV-DPDEG--------------------------LNDREHINKYNLTIIATDKGNPPR 241 (1186)
Q Consensus 189 ~~~~~~~v~E~~~~g~~v~~v~~~-D~D~g--------------------------~~D~E~~~~y~l~v~a~D~g~p~~ 241 (1186)
.|.+.++|....-..|..++|. +.+.+ ..|||....|.|.|+|+|.+.| +
T Consensus 2082 --~y~avi~e~~tv~spvv~vqa~s~l~~kv~YsIldg~~slFtvnf~TG~i~v~~pLd~ea~t~h~l~ieAtd~~~p-~ 2158 (4289)
T KOG1219|consen 2082 --DYVAVIEELITVSSPVVHVQAASPLGLKVTYSILDGNTSLFTVNFTTGVILVLIPLDREASTLHELLIEATDAGIP-L 2158 (4289)
T ss_pred --cEEEEeecccccccceeEEeecCCcCCceEEEEecCCcceEEEecccceEEeccccccccccceEEEEEEeccCCC-c
Confidence 4458888888776666555542 22221 1199999999999999999998 9
Q ss_pred eEEEEEEEEEeecCCCCCeecCCeeEEEEeccCCCCcEEEEEEEEeCCCCCCceEEEEEEeCCC-CcCEEEcCCCCeEEE
Q psy26 242 TATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNE-HQWFEINPTSGLITT 320 (1186)
Q Consensus 242 ~~~~~v~I~V~dvND~~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~i~y~i~~~~~-~~~F~I~~~tG~i~~ 320 (1186)
.+.+.|.|.|.|+|||+|+|++..|.++++|++++|+.|+++.|+|.|. |..|.|+|.++.+ ...|.|+..||+|++
T Consensus 2159 ~Aea~VeIiV~dIndn~PvFeqlsYt~sisE~s~igt~viqilATdsDs--n~~isYsl~g~s~~sk~f~In~sTG~it~ 2236 (4289)
T KOG1219|consen 2159 SAEAKVEIIVGDINDNPPVFEQLSYTISISENSKIGTKVIQILATDSDS--NREISYSLEGNSEISKPFRINVSTGWITV 2236 (4289)
T ss_pred ceeeEEEEEecccCCCCchhheeeEEEEccCCCccCceEEEEEeccCCC--CCceEEEeecCCccccceEEecccceEEE
Confidence 9999999999999999999999999999999999999999999999997 8999999977433 578999999999998
Q ss_pred E----------------EeeCCCCCceEEEEEEEEEEecCCCCCcccccceEEEEecCCCCCcEEEEEEEeeCCC-----
Q psy26 321 K----------------TRDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQ----- 379 (1186)
Q Consensus 321 ~----------------a~D~~~~~~~~~~~v~v~v~d~nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~----- 379 (1186)
. |+|+|.+ +++.+.|.|.|.|.|||+|.|.+..|...|+|.+..|..|..++|.|+|.
T Consensus 2237 ~g~ldyE~~q~f~~fvratdggk~-lSseviv~V~VeD~Ndn~Pef~q~~~ea~vsd~a~~g~fit~v~a~D~Dssd~lk 2315 (4289)
T KOG1219|consen 2237 AGKLDYEENQEFRFFVRATDGGKP-LSSEVIVEVHVEDFNDNPPEFNQRNYEAFVSDPARSGHFITVVNAHDLDSSDHLK 2315 (4289)
T ss_pred eeecChhhcceEEEEEEEccCCCc-ccccEEEEEEehhcCCCCchhccccceeecCCCccceeEEEEEEeccCCccchhh
Confidence 7 8899987 88999999999999999999999999999999999999999999999997
Q ss_pred --------------------------------------------------------------------------------
Q psy26 380 -------------------------------------------------------------------------------- 379 (1186)
Q Consensus 380 -------------------------------------------------------------------------------- 379 (1186)
T Consensus 2316 ~ey~~~~~l~~s~~G~iTlfNl~k~~l~~s~~lrv~vsD~v~~at~~vl~~~~~~n~~~~lveka~l~Tv~~~~~~~~~~ 2395 (4289)
T KOG1219|consen 2316 LEYNSNHFLILSENGIITLFNLLKSPLQTSYPLRVTVSDGVFRATMEVLFHPHSRNHFSELVEKADLVTVVEHDEQEDAD 2395 (4289)
T ss_pred hhhcccceeeeccCceEEehhhcccccccccceeeeeccCcceeeeEEEEEecCcccchhhhhccceeEEEEecCccccc
Confidence
Q ss_pred ----------------------CCCceeEEEcccCCCCCCceEEEE--EEEEeCCCCCceEEEEEEEEEEecCCCCcccC
Q psy26 380 ----------------------DSITGQLTVKTKLDRETITDYELK--VIAKDHGTPPQSSTATVFLFIEDVNDNNPVFY 435 (1186)
Q Consensus 380 ----------------------d~~tG~l~~~~~lD~E~~~~y~l~--v~a~D~g~p~~s~~~~v~I~V~DvNDn~P~F~ 435 (1186)
+. .|+|.+.+.||||....|.+. +.|.|.|+ +.+.++++|.++|+|||||+|.
T Consensus 2396 f~~~gt~~~~si~s~~sd~~~in~-~GqI~t~~kld~e~s~~~vi~i~v~a~Da~g--r~af~tvti~ltDiNDnpPqF~ 2472 (4289)
T KOG1219|consen 2396 FGAYGTSIYYSINSRASDHFEINK-SGQIKTLSKLDREYSEELVIIIAVMAFDAGG--RVAFCTVTIILTDINDNPPQFD 2472 (4289)
T ss_pred cccCCceeeeeechhccCceeECC-CccEEeeehhhhccCceEEEEEEEEEecCCC--eEEEEEEEEEEEecCCCCcccc
Confidence 22 399999999999998877665 55669887 8999999999999999999999
Q ss_pred CCceEEEecCCCCCCeEEEEEEEEeCCCCCCceEEEEEecCCc--------------------------------cccCC
Q psy26 436 PSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE--------------------------------AVDGG 483 (1186)
Q Consensus 436 ~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~i~~~~~--------------------------------a~d~~ 483 (1186)
...|..+|.|++.-|+.|+++.|+|+|.|.|..++|.+.+... |.|+|
T Consensus 2473 a~~Y~~nI~enaskg~~V~~v~A~D~De~snadvty~i~~e~~~~~v~~in~sG~Itv~~sL~~~en~tl~l~vkA~D~g 2552 (4289)
T KOG1219|consen 2473 AQLYRVNITENASKGKLVGHVIARDADEGSNADVTYEIVGESDVKHVFEINESGVITVKRSLDGLENSTLHLFVKAIDDG 2552 (4289)
T ss_pred ceeEEEEeecccCCCceEEEEEEecCCCCCcccEEEEecCchhhhheeeecCCceEEeehhhhcccCcEEEEEEEeccCC
Confidence 9999999999999999999999999999999999999988732 99999
Q ss_pred CccccceEEEEEEEcccccccceeeccceEEEEcccccccccCCCceEEEEEEEcCCCccccceEEEEEEeCC-----CC
Q psy26 484 NRKATENAIVEIIKNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGD-----PK 558 (1186)
Q Consensus 484 ~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~v~e~~~~~~~~~g~~v~~v~~~d~d~~~~~~~i~y~i~~g~-----~~ 558 (1186)
.|+..+...|.+.+.+...++|.|....|.|+|.|+. +.|..|+++++.+.+. ...|+++-|. +.
T Consensus 2553 ~P~~~s~ttV~v~vl~e~v~lPrFSep~y~fsvpEDv-----~vG~~Ig~v~a~~a~~-----~~i~~~v~~gt~Esn~d 2622 (4289)
T KOG1219|consen 2553 KPRRRSNTTVIVTVLPEDVNLPRFSEPIYTFSVPEDV-----PVGEEIGQVSASDADE-----HVIYSLVLGGTPESNPD 2622 (4289)
T ss_pred CCCcccceEEEEEecCcccCcccccCceEEEeccccC-----CCCCeeeEEeecccCC-----ceEEEEEeCCCCCCCCC
Confidence 9999999999999999999999999999999999999 9999999999998764 4566665432 34
Q ss_pred CceEEeCCccEEEeCccCCcccccEEEEEEEEEeCCc-eeEEEEEEEEEeCCCCCCeecCCCCCcccCCCCCCCcEEEEE
Q psy26 559 KKFEINDRTGEIITAAKLDREEQSIYNLVVSARSRLS-YGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVA 637 (1186)
Q Consensus 559 ~~F~Id~~tG~i~~~~~LD~E~~~~~~l~V~a~d~~~-~~~~~v~I~V~DvNDn~P~f~~~~~~~~V~E~~~~gt~v~~v 637 (1186)
..|++|+.||.|.+.+.||+|.+.+|.+.|.|++++. .+.+.|.|.|.|||||+|+|....|.+.+.||+++|+.|+++
T Consensus 2623 ~~Fsvdr~TG~i~v~ksLD~E~kk~yqi~v~a~~~~~vva~tsv~vqVkDvNDNaPvFe~d~y~f~i~En~pvGtsV~qf 2702 (4289)
T KOG1219|consen 2623 LPFSVDRNTGMIKVNKSLDHEKKKSYQIKVKATCGQWVVAETSVFVQVKDVNDNAPVFEKDPYLFIIEENSPVGTSVIQF 2702 (4289)
T ss_pred CceEEcCCCceEEeccccchhhhceEEEEEEeecCCceEEEEEEEEEeecccCCCccccCCceeEEEeccCCCCceEEEE
Confidence 5699999999999999999999999999999999776 788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCceEEEEEecCCCCCeEEEceecEEEEcccCCCCCccEEEEEEEEEeCCCCceeeEEEEEEEEEecCCCCC
Q psy26 638 RARDRDSGVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTP 717 (1186)
Q Consensus 638 ~a~D~D~~~n~~v~ysl~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~DvND~~P 717 (1186)
+|.|+|.|.||+++|+|.+.. .+|.|++.+|||++...||+|+.+.|.|.|+|+|.|.+ ++.+.|.|.|.|+||+||
T Consensus 2703 ~AsD~Ds~~nGqirysl~~~v-~yF~In~etGwlTt~~eld~ek~d~y~lkv~AtDhG~~--ssq~~v~v~vtDvndspp 2779 (4289)
T KOG1219|consen 2703 HASDMDSGNNGQIRYSLTSPV-PYFAINPETGWLTTLFELDLEKQDLYSLKVVATDHGVP--SSQATVLVHVTDVNDSPP 2779 (4289)
T ss_pred EeeccCCCCCceEEEEEcCCc-ceEEEcCCCCeeeehhhhccccCCceEEEEEEecCCcc--cccceEEEEEEecCCCcc
Confidence 999999999999999998753 39999999999999999999999999999999999976 788999999999999999
Q ss_pred ccCCceeEEEEecCCCCCcEEEEEEEecCCCCCCeeEEEEEEeCCCCCce-EEccceEEEEeecccccCCCeEEEEEEEE
Q psy26 718 VFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKF-GIFPDGFMYVRNSLDRETRDYYALTVLAE 796 (1186)
Q Consensus 718 ~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~n~~i~ysi~~~~~~~~F-~i~~~G~i~~~~~lD~E~~~~~~l~V~a~ 796 (1186)
+|....|..++.|+.+.|..+..+...|.|...+..++|.|..|+..+.| .|..+-.+.+++++|+|....|.|+|.|+
T Consensus 2780 rf~~eiy~gtvv~d~p~~~~ia~~si~d~D~s~~nq~t~fI~~gd~~gqF~~i~ne~~~~~kKt~~~E~t~ny~Ltvtat 2859 (4289)
T KOG1219|consen 2780 RFQREIYEGTVVEDVPGGKIIAGLSIFDADVSEVNQVTGFITLGDPLGQFWIIENEWIYEFKKTLDRESTKNYLLTVTAT 2859 (4289)
T ss_pred hhhhHhhccceeccCCCCceeeeeEeccccccccceeEEEEeCCCccceEEEEcCcceEEEecchhhhcccceEEEEEEe
Confidence 99999999999999999999999999999998777899999999999999 55556678889999999999999999999
Q ss_pred ECCCCCc----------------e--------------------------------------------------------
Q psy26 797 DHGKYPR----------------S-------------------------------------------------------- 804 (1186)
Q Consensus 797 D~~~~~~----------------s-------------------------------------------------------- 804 (1186)
|+-.-.. +
T Consensus 2860 dg~f~~s~~vkv~v~~s~dn~~~c~~~~~t~i~~ed~f~gk~ilkisal~~dn~tna~itf~L~~~~a~kf~lnp~tgil 2939 (4289)
T KOG1219|consen 2860 DGIFMNSDNVKVLVLDSNDNSPFCGNQLYTKIQCEDVFPGKQILKISALDVDNLTNARITFPLAGQGAIKFKLNPKTGIL 2939 (4289)
T ss_pred ccceeccceEEEEeeccccCCccCcchhccceeccccCCceeEEEeeeeccCccccceeeeeccCCCcceEEEcCccceE
Confidence 9643110 0
Q ss_pred ---------------------------eeEeEEEEEeeCCCCCCeeeccceEEEEecCCCCCceEEEEEEEeCCCCCceE
Q psy26 805 ---------------------------SSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAE 857 (1186)
Q Consensus 805 ---------------------------~~~~v~I~V~dvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~g~n~~ 857 (1186)
-.+.+++.+.|+|||+|.|....+...|-||...++....+.++|+|.|.+.+
T Consensus 2940 kt~~~~~~e~~~~~nLe~~at~~~gr~cqa~Itv~~edvNdn~p~~~e~~~ai~ifente~~tl~~~v~r~~ad~~~f~k 3019 (4289)
T KOG1219|consen 2940 KTPTDLDRETIIVKNLENAATDGGGRVCQANITVSNEDVNDNAPTFLEETMAIDIFENTERSTLTITVNRSDADCGVFQK 3019 (4289)
T ss_pred ecCCCCcchhhHHHhHHhHhhhcccceeeeeEEEEecccccccccccchheEEEeecCCCcccceEEEeeccccccchhh
Confidence 24578899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC-CCCeEEccCCceEEEeeccccccccccCCceEEEEEEEEEeCCCCCceeEEEEEEEEecCCCCCCccccCC
Q psy26 858 LSFALSNA-KGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTP 936 (1186)
Q Consensus 858 l~y~l~~~-~~~F~Id~~tG~i~~~~~ld~e~~~~~~~~~~~~l~v~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~ 936 (1186)
+.|++.+. ++.|+|+..+|.+++.++||.|. +..|.+++.|.|+|. .+....++.+.|.|.|||+|.|....
T Consensus 3020 i~y~l~dsa~g~fsidei~gvi~l~kpLd~e~------~~~f~lTv~asd~g~-~l~~l~tvlvsv~d~ndn~pvfe~se 3092 (4289)
T KOG1219|consen 3020 IFYSLEDSANGSFSIDEIHGVIWLEKPLDGEQ------QAIFDLTVLASDNGS-SLIFLGTVLVSVYDFNDNIPVFEDSE 3092 (4289)
T ss_pred eEEEeeeccCCccchhhccceEEeccccccch------hcceeeEEEEecCCc-eeEEeccEEEEEEecccCCccccccc
Confidence 99999875 57999999999999999999998 799999999999998 78999999999999999999999999
Q ss_pred ceEEeecCCCCCcEEEEEEEecCCCCCCCcEEEEEeeCCCCCcEEEECCCcEEEEccccCcccccEEEEEEEEEECCccc
Q psy26 937 YKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVV 1016 (1186)
Q Consensus 937 ~~~~v~E~~~~gt~v~~v~a~D~D~~~n~~v~y~i~~g~~~~~F~Id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~~~~~ 1016 (1186)
|...+.|...+|+.+.+++|.-+|.+ +....|.+.+|+..+.|++|+.||.+++.++||+|+...|.|+|.|+|.+ .
T Consensus 3093 ys~~v~e~~~vg~ev~~~~a~~~d~~-ae~~~y~~~~~n~~g~fsLds~tgil~li~sldfet~skl~ltV~a~d~g--~ 3169 (4289)
T KOG1219|consen 3093 YSSAVHEDVTVGTEVLQTTANIRDFA-AENTNYPNLSGNESGFFSLDSDTGILSLIGSLDFETSSKLSLTVEAVDVG--G 3169 (4289)
T ss_pred cceeeecccccCchhhhhhhccCCcc-ccccccccccCCCcceEEeccccceEEEecccCcccchhheEEEEEecCC--C
Confidence 99999999999999999999999832 45566999999999999999999999999999999999999999999999 7
Q ss_pred CCCceeEEEEEEEEEeCCCCCCcccCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCcEEEEEEeeCCCCCcEEEeCCccE
Q psy26 1017 SNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGI 1096 (1186)
Q Consensus 1017 ~~~~s~~~~v~I~V~dvNDn~P~f~~~~~~~~V~E~~~~g~~v~~v~A~D~D~g~~~~v~y~i~~g~~~~~F~id~~tG~ 1096 (1186)
| +++..++|.|+|.|+|||.|.|.+..|...|.|++..|..+++|.|.|.|...|+.+.|+|..|+....|.||+..|+
T Consensus 3170 p-~Le~~atV~inv~DvnDn~p~f~qe~yv~~v~enal~g~~vitV~a~d~d~e~ns~i~Yei~~~n~~l~Ftidp~nge 3248 (4289)
T KOG1219|consen 3170 P-SLEDVATVRINVTDVNDNVPSFDQEYYVTSVTENALKGPTVITVEAFDRDGENNSAILYEIIKGNQRLLFTIDPINGE 3248 (4289)
T ss_pred C-CccceeEEEEEeeecccCCCcccccceeEEEeeccccCCceEEEEeccCCCCCccceEEEEecCccceeEEecccCce
Confidence 7 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCcccccEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCccCCCceEEEEecCCCCCcEEEEEEEeeCCCCC
Q psy26 1097 LYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINTINVPITFKKLKKKK 1176 (1186)
Q Consensus 1097 l~~~~~ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~D~~~ 1176 (1186)
+.+.+.||||....|.|+|+|+|+|.|++-....|.|.|.|+|||+|+|....|+..++|+.++|..|+++..+|+|+..
T Consensus 3249 v~V~kslDrE~is~ynLkvia~d~g~ppl~e~t~v~I~V~d~ndnaPrf~~~n~st~vqen~piG~~vLq~~vtd~dsp~ 3328 (4289)
T KOG1219|consen 3249 VPVVKSLDREAISTYNLKVIAEDPGTPPLLENTAVSIEVIDVNDNAPRFITDNYSTYVQENEPIGHRVLQLLVTDQDSPD 3328 (4289)
T ss_pred EEEEeccChhhhccceEEEEecCCCCCCccccceeEEEEEeccCCCCeeeccceeEEEecCCcccceEEEEEeecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cce-EEEEe
Q psy26 1177 KKK-MLCSS 1184 (1186)
Q Consensus 1177 n~~-~~y~i 1184 (1186)
||. ++|.|
T Consensus 3329 ng~pftf~I 3337 (4289)
T KOG1219|consen 3329 NGPPFTFVI 3337 (4289)
T ss_pred cCCCeEEEE
Confidence 863 44444
No 3
>KOG4289|consensus
Probab=100.00 E-value=1.9e-125 Score=1099.19 Aligned_cols=858 Identities=34% Similarity=0.505 Sum_probs=784.7
Q ss_pred CCCCCccccCCCeeEEEEeCCCCCCcEEEEEEEEeCCCCCCcEEEEEEeccC-----cceeeccccCCCCCCCceEEEEE
Q psy26 78 NDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSETE-----RKFTNCQQQRPGGSCPKSCVFTV 152 (1186)
Q Consensus 78 ND~~P~f~~~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~i~y~l~~~~-----~~F~~~~~~~~~~e~~~~~~l~V 152 (1186)
.-++|.|.+ +.|...++||.|.||.|++|+|.|+| .+++.|++..-- ..|++++.
T Consensus 158 ~~~~~~Fqq--~~Yq~~lpEn~pagT~iasv~A~~~~---a~rl~Ysm~al~dsRS~~lFslD~~--------------- 217 (2531)
T KOG4289|consen 158 AANAVQFQQ--PNYQKELPENEPAGTIIASVKASDPD---AGRLYYSMVALFDSRSQNLFSLDPM--------------- 217 (2531)
T ss_pred CCCCccCCC--cchhccCcCCCCCCceeEEEEecCCC---cCceEEEeeeccchhccccEeeccc---------------
Confidence 346899999 99999999999999999999999999 468999987521 12221111
Q ss_pred EEEeCCCCCCeeeEEEEEEEEeCCCCCCeeeeeecCCCceeEEEeCCCCCCcEEEEEEEECCCCCCCCcccCceEEEEEE
Q psy26 153 FARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLNDREHINKYNLTII 232 (1186)
Q Consensus 153 ~a~D~g~p~~~~~~~v~i~v~d~nd~~p~~~~~~~~~~~~~~~v~E~~~~g~~v~~v~~~D~D~g~~D~E~~~~y~l~v~ 232 (1186)
.|.+ + + ....|||.+..+-|.|+
T Consensus 218 -------------------------------------------------sG~i----r-t---a~~lDREt~e~HvlrVt 240 (2531)
T KOG4289|consen 218 -------------------------------------------------SGAI----R-T---AKSLDRETKETHVLRVT 240 (2531)
T ss_pred -------------------------------------------------cccc----h-h---hhhhhhhhhheeEEEEE
Confidence 0000 0 0 01239999999999999
Q ss_pred EEeCCCCCeeEEEEEEEEEeecCCCCCeecCCeeEEEEeccCCCCcEEEEEEEEeCCCCCCceEEEEEEeCCCCcCEEEc
Q psy26 233 ATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEIN 312 (1186)
Q Consensus 233 a~D~g~p~~~~~~~v~I~V~dvND~~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~i~y~i~~~~~~~~F~I~ 312 (1186)
|.|.|.|+++++++|+|.|.|.|||.|+|++..|..++.||.++|+.|.+|.|+|.|.+.|+.|+|++..|+....|+||
T Consensus 241 A~d~~~P~~SAtttv~V~V~D~nDhsPvFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~~~~f~in 320 (2531)
T KOG4289|consen 241 AQDHGDPRRSATTTVTVLVLDTNDHSPVFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNAKNVFEIN 320 (2531)
T ss_pred eeecCCCcccceeEEEEEEeecCCCCcccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCccceeEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred CCCCeEEEEEeeCCCCCceEEEEEEEEEEecCCCCCcccccceEEEEecCCCCCcEEEEEEEeeCCCCCCceeEEEcccC
Q psy26 313 PTSGLITTKTRDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDSITGQLTVKTKL 392 (1186)
Q Consensus 313 ~~tG~i~~~a~D~~~~~~~~~~~v~v~v~d~nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~d~~tG~l~~~~~l 392 (1186)
+.+|+|. ++.+|
T Consensus 321 ~rSGvI~--------------------------------------------------------------------T~a~l 332 (2531)
T KOG4289|consen 321 PRSGVIS--------------------------------------------------------------------TRAPL 332 (2531)
T ss_pred Cccceee--------------------------------------------------------------------ccCcc
Confidence 9877654 45789
Q ss_pred CCCCCceEEEEEEEEeCCCCCceEEEEEEEEEEecCCCCcccCCCceEEEecCCCCCCeEEEEEEEEeCCCCCCceEEEE
Q psy26 393 DRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYS 472 (1186)
Q Consensus 393 D~E~~~~y~l~v~a~D~g~p~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~ 472 (1186)
|||+..+|+|.|+|.|.|.|+...++.|.|+|+|+|||+|+|....|.+.|.|+..+++.|++|+|+|.|.|.||.++|+
T Consensus 333 DRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYs 412 (2531)
T KOG4289|consen 333 DREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYS 412 (2531)
T ss_pred CHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCceEEEE
Confidence 99999999999999999999887899999999999999999999999999999999999999999999999999988888
Q ss_pred EecCCccccCCCccccceEEEEEEEcccccccceeeccceEEEEcccccccccCCCceEEEEEEEcCCCccccceEEEEE
Q psy26 473 IESGSEAVDGGNRKATENAIVEIIKNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAI 552 (1186)
Q Consensus 473 i~~~~~a~d~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~v~e~~~~~~~~~g~~v~~v~~~d~d~~~~~~~i~y~i 552 (1186)
|.++
T Consensus 413 i~Sg---------------------------------------------------------------------------- 416 (2531)
T KOG4289|consen 413 IASG---------------------------------------------------------------------------- 416 (2531)
T ss_pred eecc----------------------------------------------------------------------------
Confidence 8764
Q ss_pred EeCCCCCceEEeCCccEEEeCccCCcccccEEEEEEEEEeCC---ceeEEEEEEEEEeCCCCCCeecCCCCCcccCCCCC
Q psy26 553 VYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSRL---SYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAA 629 (1186)
Q Consensus 553 ~~g~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~l~V~a~d~~---~~~~~~v~I~V~DvNDn~P~f~~~~~~~~V~E~~~ 629 (1186)
+..+.|.||..||+|.+..+||+|.. .|++.|+|.||+ ++...-+.|.|+|+|||+|.|...++.++|.||.+
T Consensus 417 ---n~~G~f~id~~tGel~vv~plD~e~~-~ytl~IrAqDggrPpLsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~ 492 (2531)
T KOG4289|consen 417 ---NGRGQFYIDSLTGELDVVEPLDFENS-EYTLRIRAQDGGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVP 492 (2531)
T ss_pred ---CccccEEEecccceEEEeccccccCC-eeEEEEEcccCCCCCccCCCceEEEEEecCCCCceeEechhhhhhhhccc
Confidence 34678999999999999999999998 999999999965 34555566999999999999999999999999999
Q ss_pred CCcEEEEEEEEeCCCCCCceEEEEEecCCCCCeEEEceecEEEEcccCCCCCccEEEEEEEEEeCCCCceeeEEEEEEEE
Q psy26 630 VGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYI 709 (1186)
Q Consensus 630 ~gt~v~~v~a~D~D~~~n~~v~ysl~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V 709 (1186)
.|..+..+.|.|.|+|.|+.+.|++.+- +.|.|+..+|+|++.+.||||+...|.|.|+|+|.|.|++++.+.|.|.+
T Consensus 493 lg~~v~~vqaidadsg~na~l~y~laG~--~pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv 570 (2531)
T KOG4289|consen 493 LGYLVCHVQAIDADSGENARLHYSLAGV--GPFQINNGSGWITVTKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTV 570 (2531)
T ss_pred ccceEEEEecccCCCCcccceeeeeccC--CCeeEecCCceEEEeecccccccceEEEEEEEcCCCCCcccccceEEEEe
Confidence 9999999999999999999999999864 58999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCccCCceeEEEEecCCCCCcEEEEEEEecCCCCCCeeEEEEEEeCCCCCceEEcc---ceEEEEeecccccCC
Q psy26 710 QDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFP---DGFMYVRNSLDRETR 786 (1186)
Q Consensus 710 ~DvND~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~n~~i~ysi~~~~~~~~F~i~~---~G~i~~~~~lD~E~~ 786 (1186)
.|+|||.|.|.+..|+..+.|+.+.|+.|.+++|+|.|. +..++|.|.+++....|.|.. -|.|.+.-++|+.+.
T Consensus 571 ~dvndndP~Ft~~eytl~inED~pvgsSI~tvtAvD~d~--~s~ityqi~g~ntrn~Fsi~si~g~Glitlalp~dkKqe 648 (2531)
T KOG4289|consen 571 LDVNDNDPTFTQKEYTLRINEDAPVGSSIVTVTAVDRDA--NSVITYQITGGNTRNRFSISSIGGGGLITLALPLDKKQE 648 (2531)
T ss_pred cccCCCCCccccCceEEEecCCccccceEEEEEEecccc--ccceEEEecCCcccccceeeccCCcceEEeecchhhccc
Confidence 999999999999999999999999999999999999997 678999999999889999987 578889999999999
Q ss_pred CeEEEEEEEEECCCCCceeeEeEEEEEeeCCCCCCeeeccceEEEEecCCCCCceEEEEEEEeCCCCCceEEEEEecCCC
Q psy26 787 DYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAK 866 (1186)
Q Consensus 787 ~~~~l~V~a~D~~~~~~s~~~~v~I~V~dvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~g~n~~l~y~l~~~~ 866 (1186)
.+|.+.|+|+|++ +..+..|.|+|.|.|-+.|.|....|+.+|.|..|.|+.|..++|+|.|.|+|++|+|-+..
T Consensus 649 ~~~vl~vtAtDg~---l~d~~~V~v~I~danThrpvFqs~pfTvsI~e~rP~G~tvvtlsasd~D~geNARI~y~led-- 723 (2531)
T KOG4289|consen 649 RQYVLAVTATDGT---LQDTCSVNVNITDANTHRPVFQSSPFTVSINEDRPLGTTVVTLSASDEDTGENARITYILED-- 723 (2531)
T ss_pred ceEEEEEEecCCc---cccceEEEEEeeecccCCcccccCCeeEeeccCCcCCceeEEEecccCCCCccceEEEEecc--
Confidence 9999999999955 57788999999999999999999999999999999999999999999999999999995544
Q ss_pred CCeEEccCCceEEEeeccccccccccCCceEEEEEEEEEeCCCCCceeEEEEEEEEecCCCCCCccccCCceEEeecCCC
Q psy26 867 GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGAS 946 (1186)
Q Consensus 867 ~~F~Id~~tG~i~~~~~ld~e~~~~~~~~~~~~l~v~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~ 946 (1186)
..|+||+.+|.+++...||+|. +-.|++.++|.|++.|...++.++.|.|.|+|||+|+|..+.|.++|.|+++
T Consensus 724 ~~Frid~dsg~i~t~~~ld~ed------qvtytl~itA~D~~~pq~adtttveV~v~diNDnaPqf~assyt~sV~Ed~P 797 (2531)
T KOG4289|consen 724 EAFRIDPDSGAIYTQAELDYED------QVTYTLAITARDNGIPQKADTTTVEVLVNDINDNAPQFLASSYTGSVFEDAP 797 (2531)
T ss_pred cceeecCCCCceEEeeeeeccc------ceeeEeeeeecCCCCCCcCccEEEEEEeecccccCcccchhhceeEeecCCC
Confidence 3499999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEecCCCCCCCcEEEEEeeCC-CCCcEEEECCCcEEEEccccCcccccEEEEEEEEEECCcccCCCceeEEE
Q psy26 947 IGTQVFRVSTMDADEGLNGDVYYKIISGN-DDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTM 1025 (1186)
Q Consensus 947 ~gt~v~~v~a~D~D~~~n~~v~y~i~~g~-~~~~F~Id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~ 1025 (1186)
++|.+++|+|+|+|.|.|+.+.|.+..|. ..+.|.|++++|.|++.+.||||....|.|.+.|.|.+ .| ++++.+.
T Consensus 798 v~TsvlQVSatDaD~g~Ng~v~y~~qg~~d~p~~F~IEptSGviRtl~rLdRE~~avy~L~a~avDrg--~p-~ls~~~e 874 (2531)
T KOG4289|consen 798 VFTSVLQVSATDADSGPNGRVYYTFQGGDDGPGDFYIEPTSGVIRTLRRLDRENVAVYVLAAYAVDRG--NP-PLSAPVE 874 (2531)
T ss_pred CcceEEEEEEeccCCCCCceEEEEecCCCCCCCceEEccCcceeehhhhhcchheeEEEEEEEEeeCC--CC-CcCCceE
Confidence 99999999999999999999999987653 34789999999999999999999999999999999999 77 8999999
Q ss_pred EEEEEEeCCCCCCcccCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCcEEEEEEeeCCCCCcEEEeCCccEEEEcccCCc
Q psy26 1026 VTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDY 1105 (1186)
Q Consensus 1026 v~I~V~dvNDn~P~f~~~~~~~~V~E~~~~g~~v~~v~A~D~D~g~~~~v~y~i~~g~~~~~F~id~~tG~l~~~~~ld~ 1105 (1186)
|+|+|+|+|||||+|.+..++..|.||.++|..+.+++|.|+|+|+|..|+|+|.+|+....|.++...|+|.....|||
T Consensus 875 ItvtvldvNDnaPvfe~~e~e~~I~enspvgs~va~i~a~dpdEG~NA~IsYqIvgg~d~~~fq~de~~~~lla~~efdy 954 (2531)
T KOG4289|consen 875 ITVTVLDVNDNAPVFEQDELELFIEENSPVGSVVALITADDPDEGPNAHISYQIVGGNDPELFQLDEFSGELLALVEFDY 954 (2531)
T ss_pred EEEEEEecCCCCCCCCCcceeeEEeecCccceeeEEEEccCCCcCCcceEEEeeccCccHHHHHHHHhhhhhhhheeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cccEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCccCCCc--eEEEEecCCCCCcEEEEEEEeeCCCCCCceEEE
Q psy26 1106 E-EINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTA--IVRQIRENIPINTINVPITFKKLKKKKKKKMLC 1182 (1186)
Q Consensus 1106 e-~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~--~~~~v~e~~~~g~~v~~v~a~D~D~~~n~~~~y 1182 (1186)
| ....|.+.++|+- -++.+.+++.|.|.|.|||+|....-. |...+ |.-.+-.++.+-|.|||. +..+.|
T Consensus 955 ef~~~eyv~~~qats---~plvS~atv~i~vsd~ndn~pvl~~f~iLfN~y~--nsf~~g~ig~iPA~Dpd~--sd~l~y 1027 (2531)
T KOG4289|consen 955 EFTRVEYVLVVQATS---APLVSRATVHIRVSDQNDNPPVLEDFQILFNNYV--NSFPAGLIGRIPAHDPDV--SDSLIY 1027 (2531)
T ss_pred hhccceeeEEeeccc---cccccceeEEEEecccCCCchhhccHHHHhhhhh--hccccceeEecccCCcch--hhhhhe
Confidence 9 7889999999975 357899999999999999999875421 11111 455566789999999996 466888
Q ss_pred EeC
Q psy26 1183 SSG 1185 (1186)
Q Consensus 1183 ~i~ 1185 (1186)
++.
T Consensus 1028 ~~e 1030 (2531)
T KOG4289|consen 1028 SFE 1030 (2531)
T ss_pred eec
Confidence 764
No 4
>KOG4289|consensus
Probab=100.00 E-value=1.8e-122 Score=1074.22 Aligned_cols=857 Identities=34% Similarity=0.522 Sum_probs=776.8
Q ss_pred CCCCeEEEEEeCCCCCeeEEEEEEccCCccccccEEEEEEEEEECCcCCeEEEEEEEEEEEecCCCCCccccCCCeeEEE
Q psy26 15 TLQNSKAKVTANPSGETSYLYLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94 (1186)
Q Consensus 15 ~~~~f~~~~~~~~~g~~~~~~l~~~~~LD~E~~~~y~l~v~a~D~~~~~~~~~~~v~i~V~DvND~~P~f~~~~~~y~~~ 94 (1186)
..+.|.++. .+|+ +++.+.||||+...+.|+|+|.|.+.|+++++++|+|.|+|.|||.|+|++ ..|.-+
T Consensus 208 S~~lFslD~---~sG~-----irta~~lDREt~e~HvlrVtA~d~~~P~~SAtttv~V~V~D~nDhsPvFEq--~~Y~e~ 277 (2531)
T KOG4289|consen 208 SQNLFSLDP---MSGA-----IRTAKSLDRETKETHVLRVTAQDHGDPRRSATTTVTVLVLDTNDHSPVFEQ--DEYREE 277 (2531)
T ss_pred ccccEeecc---cccc-----chhhhhhhhhhhheeEEEEEeeecCCCcccceeEEEEEEeecCCCCcccch--hHHHHH
Confidence 456777774 3466 567899999999999999999999999999999999999999999999999 999999
Q ss_pred EeCCCCCCcEEEEEEEEeCCCCCCcEEEEEEeccCc--ceeeccccCCCCCCCceEEEEEEEEeCCCCCCeeeEEEEEEE
Q psy26 95 LNESVLPGTKVLQVIATDNDQGDNAKITYYLSETER--KFTNCQQQRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNL 172 (1186)
Q Consensus 95 v~E~~~~gt~v~~v~A~D~D~g~n~~i~y~l~~~~~--~F~~~~~~~~~~e~~~~~~l~V~a~D~g~p~~~~~~~v~i~v 172 (1186)
+.||.++|..|++|+|+|.|.++|+.|.|++.+++. .|.+++.+ +.
T Consensus 278 lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~~~~f~in~rS-------------------------Gv------- 325 (2531)
T KOG4289|consen 278 LRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNAKNVFEINPRS-------------------------GV------- 325 (2531)
T ss_pred HhhccccCceEEEEEeccCCCCCCCceEEEecCCCccceeEEcCcc-------------------------ce-------
Confidence 999999999999999999999999999999998643 45443321 10
Q ss_pred EeCCCCCCeeeeeecCCCceeEEEeCCCCCCcEEEEEEEECCCCCCCCcccCceEEEEEEEEeCCCCCeeEEEEEEEEEe
Q psy26 173 LDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLNDREHINKYNLTIIATDKGNPPRTATAFLIIHVN 252 (1186)
Q Consensus 173 ~d~nd~~p~~~~~~~~~~~~~~~v~E~~~~g~~v~~v~~~D~D~g~~D~E~~~~y~l~v~a~D~g~p~~~~~~~v~I~V~ 252 (1186)
+ +- .+..|||+..+|+|.|.|+|+|.|+...++.|.|+|.
T Consensus 326 ---------I---------------------------~T----~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~ 365 (2531)
T KOG4289|consen 326 ---------I---------------------------ST----RAPLDREELESYQLDVEASDQGRPPGPRTAMVEITVE 365 (2531)
T ss_pred ---------e---------------------------ec----cCccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEE
Confidence 0 00 1344999999999999999999998888999999999
Q ss_pred ecCCCCCeecCCeeEEEEeccCCCCcEEEEEEEEeCCCCCCceEEEEEEeCCCCcCEEEcCCCCeEEEEEeeCCCCCceE
Q psy26 253 DVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTRDGGPNPKWA 332 (1186)
Q Consensus 253 dvND~~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~i~y~i~~~~~~~~F~I~~~tG~i~~~a~D~~~~~~~~ 332 (1186)
|+|||+|+|....|.++|.|+..+++.|++|+|+|.|.|.|+.+.|+|.+|+..|.|.||..
T Consensus 366 D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~------------------ 427 (2531)
T KOG4289|consen 366 DENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSL------------------ 427 (2531)
T ss_pred ecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCccccEEEecc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999765
Q ss_pred EEEEEEEEEecCCCCCcccccceEEEEecCCCCCcEEEEEEEeeCCCCCCceeEEEcccCCCCCCceEEEEEEEEeCCCC
Q psy26 333 YTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQDSITGQLTVKTKLDRETITDYELKVIAKDHGTP 412 (1186)
Q Consensus 333 ~~~v~v~v~d~nd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~d~~tG~l~~~~~lD~E~~~~y~l~v~a~D~g~p 412 (1186)
+|+|.+..+||+|.. .|.+.|+|.|+|.|
T Consensus 428 --------------------------------------------------tGel~vv~plD~e~~-~ytl~IrAqDggrP 456 (2531)
T KOG4289|consen 428 --------------------------------------------------TGELDVVEPLDFENS-EYTLRIRAQDGGRP 456 (2531)
T ss_pred --------------------------------------------------cceEEEeccccccCC-eeEEEEEcccCCCC
Confidence 456667789999998 99999999999999
Q ss_pred CceEEEEEEEEEEecCCCCcccCCCceEEEecCCCCCCeEEEEEEEEeCCCCCCceEEEEEecCCccccCCCccccceEE
Q psy26 413 PQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSEAVDGGNRKATENAI 492 (1186)
Q Consensus 413 ~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~v~Y~i~~~~~a~d~~~~~~~~~~~ 492 (1186)
+++.+.-+.|.|+|+|||+|+|....+.++|.|+.+.|..+..+.|.|+|+|+|+.+.|++..
T Consensus 457 pLsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l~y~laG----------------- 519 (2531)
T KOG4289|consen 457 PLSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARLHYSLAG----------------- 519 (2531)
T ss_pred CccCCCceEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccceeeeecc-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999864
Q ss_pred EEEEEcccccccceeeccceEEEEcccccccccCCCceEEEEEEEcCCCccccceEEEEEEeCCCCCceEEeCCccEEEe
Q psy26 493 VEIIKNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIIT 572 (1186)
Q Consensus 493 v~i~~~~~~~~~~~~~~~~~~~~v~e~~~~~~~~~g~~v~~v~~~d~d~~~~~~~i~y~i~~g~~~~~F~Id~~tG~i~~ 572 (1186)
.+.|.|+..+|+|++
T Consensus 520 -----------------------------------------------------------------~~pf~I~~~SG~Itv 534 (2531)
T KOG4289|consen 520 -----------------------------------------------------------------VGPFQINNGSGWITV 534 (2531)
T ss_pred -----------------------------------------------------------------CCCeeEecCCceEEE
Confidence 247999999999999
Q ss_pred CccCCcccccEEEEEEEEEeC---CceeEEEEEEEEEeCCCCCCeecCCCCCcccCCCCCCCcEEEEEEEEeCCCCCCce
Q psy26 573 AAKLDREEQSIYNLVVSARSR---LSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSR 649 (1186)
Q Consensus 573 ~~~LD~E~~~~~~l~V~a~d~---~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~n~~ 649 (1186)
.+.||||+...|.|.|+|+|. ...+.+.|.|++.|+|||.|.|.+..|.+++.|+.+.|+.|.+++|+|.|. +..
T Consensus 535 tk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl~inED~pvgsSI~tvtAvD~d~--~s~ 612 (2531)
T KOG4289|consen 535 TKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTLRINEDAPVGSSIVTVTAVDRDA--NSV 612 (2531)
T ss_pred eecccccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEEEecCCccccceEEEEEEecccc--ccc
Confidence 999999999999999999993 456788999999999999999999999999999999999999999999996 688
Q ss_pred EEEEEecCC-CCCeEEEcee--cEEEEcccCCCCCccEEEEEEEEEeCCCCceeeEEEEEEEEEecCCCCCccCCceeEE
Q psy26 650 IFYSLSSNP-DDQFKIVETN--GVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYET 726 (1186)
Q Consensus 650 v~ysl~~~~-~~~F~id~~t--G~i~~~~~ld~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~DvND~~P~f~~~~~~~ 726 (1186)
++|.|.++. ...|.|+... |.|++.-++|+.....|.+.|.|+|+ .+..++.|.|+|.|.|-+.|+|....|.+
T Consensus 613 ityqi~g~ntrn~Fsi~si~g~Glitlalp~dkKqe~~~vl~vtAtDg---~l~d~~~V~v~I~danThrpvFqs~pfTv 689 (2531)
T KOG4289|consen 613 ITYQITGGNTRNRFSISSIGGGGLITLALPLDKKQERQYVLAVTATDG---TLQDTCSVNVNITDANTHRPVFQSSPFTV 689 (2531)
T ss_pred eEEEecCCcccccceeeccCCcceEEeecchhhcccceEEEEEEecCC---ccccceEEEEEeeecccCCcccccCCeeE
Confidence 999999754 6789998765 78999999999999999999999996 48899999999999999999999999999
Q ss_pred EEecCCCCCcEEEEEEEecCCCCCCeeEEEEEEeCCCCCceEEcc-ceEEEEeecccccCCCeEEEEEEEEECCCCCcee
Q psy26 727 SLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFP-DGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSS 805 (1186)
Q Consensus 727 ~v~E~~~~g~~v~~v~a~D~D~g~n~~i~ysi~~~~~~~~F~i~~-~G~i~~~~~lD~E~~~~~~l~V~a~D~~~~~~s~ 805 (1186)
+|.|..|.|+.|.+++|+|.|.|.|++|+|-+. . ..|.|++ +|.+++...||||.+-.|++.++|.|++.|+...
T Consensus 690 sI~e~rP~G~tvvtlsasd~D~geNARI~y~le-d---~~Frid~dsg~i~t~~~ld~edqvtytl~itA~D~~~pq~ad 765 (2531)
T KOG4289|consen 690 SINEDRPLGTTVVTLSASDEDTGENARITYILE-D---EAFRIDPDSGAIYTQAELDYEDQVTYTLAITARDNGIPQKAD 765 (2531)
T ss_pred eeccCCcCCceeEEEecccCCCCccceEEEEec-c---cceeecCCCCceEEeeeeecccceeeEeeeeecCCCCCCcCc
Confidence 999999999999999999999999999999443 2 2499999 8999999999999999999999999999999999
Q ss_pred eEeEEEEEeeCCCCCCeeeccceEEEEecCCCCCceEEEEEEEeCCCCCceEEEEEecCC---CCCeEEccCCceEEEee
Q psy26 806 SVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNA---KGDFEIDSRNGFIKTMR 882 (1186)
Q Consensus 806 ~~~v~I~V~dvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~g~n~~l~y~l~~~---~~~F~Id~~tG~i~~~~ 882 (1186)
+++|.|.|.|+|||+|+|..+.|.++|.|++|+++.+++|+|+|+|.|.|+.+.|.+.++ .+.|.|++.+|.|++.+
T Consensus 766 tttveV~v~diNDnaPqf~assyt~sV~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y~~qg~~d~p~~F~IEptSGviRtl~ 845 (2531)
T KOG4289|consen 766 TTTVEVLVNDINDNAPQFLASSYTGSVFEDAPVFTSVLQVSATDADSGPNGRVYYTFQGGDDGPGDFYIEPTSGVIRTLR 845 (2531)
T ss_pred cEEEEEEeecccccCcccchhhceeEeecCCCCcceEEEEEEeccCCCCCceEEEEecCCCCCCCceEEccCcceeehhh
Confidence 999999999999999999999999999999999999999999999999999999999764 37899999999999999
Q ss_pred ccccccccccCCceEEEEEEEEEeCCCCCceeEEEEEEEEecCCCCCCccccCCceEEeecCCCCCcEEEEEEEecCCCC
Q psy26 883 SFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEG 962 (1186)
Q Consensus 883 ~ld~e~~~~~~~~~~~~l~v~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~ 962 (1186)
.||||. ...|.|.+.|.|.|.|++++.+.|+|+|.|+|||||+|.+..|...|.||.++|..+++++|.|+|+|
T Consensus 846 rLdRE~------~avy~L~a~avDrg~p~ls~~~eItvtvldvNDnaPvfe~~e~e~~I~enspvgs~va~i~a~dpdEG 919 (2531)
T KOG4289|consen 846 RLDREN------VAVYVLAAYAVDRGNPPLSAPVEITVTVLDVNDNAPVFEQDELELFIEENSPVGSVVALITADDPDEG 919 (2531)
T ss_pred hhcchh------eeEEEEEEEEeeCCCCCcCCceEEEEEEEecCCCCCCCCCcceeeEEeecCccceeeEEEEccCCCcC
Confidence 999998 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeeCCCCCcEEEECCCcEEEEccccCcc-cccEEEEEEEEEECCcccCCCceeEEEEEEEEEeCCCCCCccc
Q psy26 963 LNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRE-TVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFV 1041 (1186)
Q Consensus 963 ~n~~v~y~i~~g~~~~~F~Id~~tG~i~~~~~lD~E-~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~dvNDn~P~f~ 1041 (1186)
+|..|.|+|..|+....|.++...|.|...-.|||| ....|.+.++|+-. ++.+.+++.|.|.|.|||+|...
T Consensus 920 ~NA~IsYqIvgg~d~~~fq~de~~~~lla~~efdyef~~~eyv~~~qats~------plvS~atv~i~vsd~ndn~pvl~ 993 (2531)
T KOG4289|consen 920 PNAHISYQIVGGNDPELFQLDEFSGELLALVEFDYEFTRVEYVLVVQATSA------PLVSRATVHIRVSDQNDNPPVLE 993 (2531)
T ss_pred CcceEEEeeccCccHHHHHHHHhhhhhhhheeehhhhccceeeEEeecccc------ccccceeEEEEecccCCCchhhc
Confidence 999999999999999999999999999999999999 77889999988743 58999999999999999999875
Q ss_pred CCc--eEEEEeCCCCCCeEEEEEEEEeCCCCCCcEEEEEEeeCCCCCcEEEeCCccEEEEcccCCcccccEEEEEEEEEE
Q psy26 1042 KTE--SKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASD 1119 (1186)
Q Consensus 1042 ~~~--~~~~V~E~~~~g~~v~~v~A~D~D~g~~~~v~y~i~~g~~~~~F~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D 1119 (1186)
.-. +.-.+ |.-.+..++.+.|.|+|. +..+.|++. +......|+.+|+|.+++.||.. -.-.+.|.++|
T Consensus 994 ~f~iLfN~y~--nsf~~g~ig~iPA~Dpd~--sd~l~y~~e---El~L~~an~~tGel~lsr~ldnN--l~asm~v~VsD 1064 (2531)
T KOG4289|consen 994 DFQILFNNYV--NSFPAGLIGRIPAHDPDV--SDSLIYSFE---ELNLLLANAKTGELLLSRELDNN--LEASMKVCVSD 1064 (2531)
T ss_pred cHHHHhhhhh--hccccceeEecccCCcch--hhhhheeec---cceeEEecccCCcEEehhhhhcc--cceeEEEEeec
Confidence 321 11111 555667889999999995 778999986 34577889999999999999876 45678889999
Q ss_pred CCCCCceEEEEEEEEE
Q psy26 1120 GGTPRLSTIFMFTINV 1135 (1186)
Q Consensus 1120 ~g~p~~s~~~~v~I~V 1135 (1186)
+-. ...+...+.+.+
T Consensus 1065 G~h-svta~C~lrvvi 1079 (2531)
T KOG4289|consen 1065 GAH-SVTAQCRLRVVI 1079 (2531)
T ss_pred Ccc-ceeeeEEEEEEE
Confidence 876 233344444433
No 5
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.96 E-value=1.4e-26 Score=246.88 Aligned_cols=198 Identities=47% Similarity=0.643 Sum_probs=185.3
Q ss_pred ceEEeecCCCCCcEEEEEEEecCCCCCCCcEEEEEeeCCCCCcEEEECCCcEEEEccccCcccccEEEEEEEEEECCccc
Q psy26 937 YKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVV 1016 (1186)
Q Consensus 937 ~~~~v~E~~~~gt~v~~v~a~D~D~~~n~~v~y~i~~g~~~~~F~Id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~~~~~ 1016 (1186)
|.+.|.|+++.|+.++++.|.|+|.+.+..++|+|.++....+|.|++.+|.|++.+.||||....|.|.|+|+|.+ .
T Consensus 2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g--~ 79 (199)
T cd00031 2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGG--G 79 (199)
T ss_pred eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECC--c
Confidence 67899999999999999999999998889999999987666899999999999999999999999999999999976 4
Q ss_pred CCCceeEEEEEEEEEeCCCCCCcccCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCcEEEEEEeeCCCCCcEEEeCCccE
Q psy26 1017 SNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGI 1096 (1186)
Q Consensus 1017 ~~~~s~~~~v~I~V~dvNDn~P~f~~~~~~~~V~E~~~~g~~v~~v~A~D~D~g~~~~v~y~i~~g~~~~~F~id~~tG~ 1096 (1186)
+ .+++...|+|.|.|+|||+|.|....+.+.|.|+.+.|+.++++.|+|+|.+.++.++|+|.++....+|.|++.+|.
T Consensus 80 ~-~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~i~~~~G~ 158 (199)
T cd00031 80 P-PLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSILSGNDKELFSIDPNTGI 158 (199)
T ss_pred C-cceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCCCCCEEEEeCCceE
Confidence 4 456899999999999999999998889999999999999999999999999888999999998765689999999999
Q ss_pred EEEcccCCcccccEEEEEEEEEECCCCCceEEEEEEEEEEe
Q psy26 1097 LYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVED 1137 (1186)
Q Consensus 1097 l~~~~~ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~d 1137 (1186)
|++.+.+|||....|.|.|+|+|.+.|.++.+..++|.|.|
T Consensus 159 i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~d 199 (199)
T cd00031 159 ITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVLD 199 (199)
T ss_pred EEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEEC
Confidence 99999999999999999999999998889999999999875
No 6
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.95 E-value=8.4e-26 Score=240.79 Aligned_cols=196 Identities=39% Similarity=0.604 Sum_probs=183.7
Q ss_pred CCcccCCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCC-CCeEEEceecEEEEcccCCCCCccEEEEEEEEEeCCCCc
Q psy26 620 DEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPD-DQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQS 698 (1186)
Q Consensus 620 ~~~~V~E~~~~gt~v~~v~a~D~D~~~n~~v~ysl~~~~~-~~F~id~~tG~i~~~~~ld~e~~~~~~l~V~a~D~g~~~ 698 (1186)
|.+.|.|+++.|+.++++.|.|+|.+.++.++|+|.+.+. .+|.|++.+|.|++.+.||||....|.|.|+|+|.|.|.
T Consensus 2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g~~~ 81 (199)
T cd00031 2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGGGPP 81 (199)
T ss_pred eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECCcCc
Confidence 5678999999999999999999999888999999997654 799999999999999999999999999999999998888
Q ss_pred eeeEEEEEEEEEecCCCCCccCCceeEEEEecCCCCCcEEEEEEEecCCCCCCeeEEEEEEeCCCCCceEEcc-ceEEEE
Q psy26 699 LSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFP-DGFMYV 777 (1186)
Q Consensus 699 ~s~~~~v~I~V~DvND~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~n~~i~ysi~~~~~~~~F~i~~-~G~i~~ 777 (1186)
+++...++|.|.|+||++|.|....|.+.+.|+.+.|+.++++.|+|+|.+.++.++|+|.++.....|.|++ +|.|++
T Consensus 82 ~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~i~~~~G~i~~ 161 (199)
T cd00031 82 LSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSILSGNDKELFSIDPNTGIITL 161 (199)
T ss_pred ceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCCCCCEEEEeCCceEEEe
Confidence 8899999999999999999999888999999999999999999999999988899999999776668999999 999999
Q ss_pred eecccccCCCeEEEEEEEEECCCCCceeeEeEEEEEee
Q psy26 778 RNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIID 815 (1186)
Q Consensus 778 ~~~lD~E~~~~~~l~V~a~D~~~~~~s~~~~v~I~V~d 815 (1186)
.+.||||....|.|.|.|+|.+.+.++....++|.|.|
T Consensus 162 ~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~d 199 (199)
T cd00031 162 AKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVLD 199 (199)
T ss_pred CCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEEC
Confidence 99999999999999999999988778889999998875
No 7
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=99.58 E-value=2.7e-14 Score=131.49 Aligned_cols=92 Identities=42% Similarity=0.534 Sum_probs=88.9
Q ss_pred eEEEEeCCCCCCeEEEEEEEEeCCCCCCcEEEEEEeeCCCCCcEEEeCCccEEEEcccCCcccccEEEEEEEEEEC-CCC
Q psy26 1045 SKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDG-GTP 1123 (1186)
Q Consensus 1045 ~~~~V~E~~~~g~~v~~v~A~D~D~g~~~~v~y~i~~g~~~~~F~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~-g~p 1123 (1186)
|.++|+|+++.|+.++++.|.|+|.+.|+.+.|+|..++..++|.|++.+|+|++.+.||||....|.|.|+|+|. |.|
T Consensus 1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~ 80 (93)
T PF00028_consen 1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSP 80 (93)
T ss_dssp EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSS
T ss_pred CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCC
Confidence 6889999999999999999999999999999999999988899999999999999999999999999999999999 899
Q ss_pred CceEEEEEEEEEE
Q psy26 1124 RLSTIFMFTINVE 1136 (1186)
Q Consensus 1124 ~~s~~~~v~I~V~ 1136 (1186)
+++++++|.|+|+
T Consensus 81 ~~~~~~~V~I~V~ 93 (93)
T PF00028_consen 81 PLSSTATVTINVL 93 (93)
T ss_dssp EEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEC
Confidence 9999999999985
No 8
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=99.56 E-value=6.1e-14 Score=129.09 Aligned_cols=92 Identities=47% Similarity=0.660 Sum_probs=87.2
Q ss_pred ceEEeecCCCCCcEEEEEEEecCCCCCCCcEEEEEeeCCCCCcEEEECCCcEEEEccccCcccccEEEEEEEEEEC-Ccc
Q psy26 937 YKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDA-ATV 1015 (1186)
Q Consensus 937 ~~~~v~E~~~~gt~v~~v~a~D~D~~~n~~v~y~i~~g~~~~~F~Id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~-~~~ 1015 (1186)
|.+.|+|++++|+.++++.|.|+|.+.|+.+.|+|..++..+.|.|++.+|.|++.+.||||....|.|.|.|+|. +
T Consensus 1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~-- 78 (93)
T PF00028_consen 1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGG-- 78 (93)
T ss_dssp EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTT--
T ss_pred CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCC--
Confidence 6889999999999999999999999999999999999988899999999999999999999999999999999999 5
Q ss_pred cCCCceeEEEEEEEEE
Q psy26 1016 VSNQLSSTTMVTIDVL 1031 (1186)
Q Consensus 1016 ~~~~~s~~~~v~I~V~ 1031 (1186)
.| +++++++|+|+|+
T Consensus 79 ~~-~~~~~~~V~I~V~ 93 (93)
T PF00028_consen 79 SP-PLSSTATVTINVL 93 (93)
T ss_dssp SS-EEEEEEEEEEEEE
T ss_pred CC-CCEEEEEEEEEEC
Confidence 45 8999999999985
No 9
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=99.46 E-value=3.8e-13 Score=119.63 Aligned_cols=79 Identities=48% Similarity=0.680 Sum_probs=74.9
Q ss_pred EeCCCCCCcEEEEEEeeCCCCCcEEEeCCccEEEEcccCCcccccEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCC
Q psy26 1065 TDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPP 1143 (1186)
Q Consensus 1065 ~D~D~g~~~~v~y~i~~g~~~~~F~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P 1143 (1186)
+|+|.|.|+.+.|+|.+++...+|.|++.+|.|++.+.||||....|.|.|+|+|.|.|++++.++|+|.|.|+|||+|
T Consensus 1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~P 79 (79)
T smart00112 1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNAP 79 (79)
T ss_pred CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCCC
Confidence 4889998999999999877668999999999999999999999999999999999999999999999999999999998
No 10
>KOG1834|consensus
Probab=99.44 E-value=4.1e-12 Score=143.22 Aligned_cols=206 Identities=22% Similarity=0.296 Sum_probs=163.0
Q ss_pred EEEecCCCCCccCCceeEEEEecCCCCCcEEEEEEEecCCCCC---CeeEEEEEEeCCCCCceE---Ecc---ceEEEEe
Q psy26 708 YIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGN---NGFVSYSIIEGNGEDKFG---IFP---DGFMYVR 778 (1186)
Q Consensus 708 ~V~DvND~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~---n~~i~ysi~~~~~~~~F~---i~~---~G~i~~~ 778 (1186)
...-+|-+.|.... .|..-|.||...-...-.+.|-|.|..- .-..-|.|.+.+ -.|. ++. .|.|+.+
T Consensus 22 ~aarankhkpwie~-ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq~--vPFdavVvdK~TGegvlRaK 98 (952)
T KOG1834|consen 22 HAARANKHKPWIEE-EYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQP--VPFDAVVVDKYTGEGVLRAK 98 (952)
T ss_pred ccccccccCccccc-ceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCCC--CCceEEEEeccCCceEEeec
Confidence 34556778888876 5999999997543333457788888621 123467776433 2454 344 5789999
Q ss_pred ecccccCCCeEEEEEEEEECCCCC------ceeeEeEEEEEeeCCCCCCeeeccceEEEEecCCCCCceEEEEEEEeCCC
Q psy26 779 NSLDRETRDYYALTVLAEDHGKYP------RSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDV 852 (1186)
Q Consensus 779 ~~lD~E~~~~~~l~V~a~D~~~~~------~s~~~~v~I~V~dvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~ 852 (1186)
.+||-|.++.|+|+|+|.|.|..+ .|-.++|.|+|.|+|+.||+|..+.|.+.|.|+-.. ..|+++.|.|.|-
T Consensus 99 ~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK~y-d~il~veAiD~DC 177 (952)
T KOG1834|consen 99 EPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGKVY-DSILRVEAIDKDC 177 (952)
T ss_pred CcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecceee-eeeEEEEeecCCC
Confidence 999999999999999999976543 566789999999999999999999999999998644 5678999999997
Q ss_pred C-CceEE-EEEecCCCCCeEEccCCceEEEeeccccccccccCCceEEEEEEEEEeCCCCCceeEEEEEEEEec
Q psy26 853 G-RNAEL-SFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITD 924 (1186)
Q Consensus 853 g-~n~~l-~y~l~~~~~~F~Id~~tG~i~~~~~ld~e~~~~~~~~~~~~l~v~a~D~g~p~~s~~~~v~I~V~d 924 (1186)
+ .+++| .|.|....-.|.||. .|.|+.+.+|.|.. ...|.|+|+|.|.|.......+.|+|.|..
T Consensus 178 spq~sqIC~YEI~t~d~PFaIdn-~G~irnTekLny~k------e~~Y~ltVtAyDCg~kraa~d~lV~v~Vkp 244 (952)
T KOG1834|consen 178 SPQYSQICEYEITTPDVPFAIDN-DGNIRNTEKLNYTK------EHQYKLTVTAYDCGKKRAASDSLVTVHVKP 244 (952)
T ss_pred CCcccceeEEEecCCCCceEEcC-CCcccccccccccc------ceeEEEEEEEEecccccccCcceEEEEecC
Confidence 4 45555 688999888999996 79999999999987 799999999999997665666788888864
No 11
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=99.43 E-value=7.4e-13 Score=117.76 Aligned_cols=78 Identities=36% Similarity=0.543 Sum_probs=73.3
Q ss_pred EeCCCCCCceEEEEEecCCC-CCeEEEceecEEEEcccCCCCCccEEEEEEEEEeCCCCceeeEEEEEEEEEecCCCCC
Q psy26 640 RDRDSGVNSRIFYSLSSNPD-DQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTP 717 (1186)
Q Consensus 640 ~D~D~~~n~~v~ysl~~~~~-~~F~id~~tG~i~~~~~ld~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~DvND~~P 717 (1186)
+|+|.|.|+.++|+|.+... ..|.|++.+|.|++.++||||....|.|.|+|+|.|.|++++.+.|+|+|.|+|||+|
T Consensus 1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~P 79 (79)
T smart00112 1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNAP 79 (79)
T ss_pred CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCCC
Confidence 48899889999999997654 8999999999999999999999999999999999999999999999999999999998
No 12
>KOG1834|consensus
Probab=99.43 E-value=7.1e-12 Score=141.32 Aligned_cols=209 Identities=25% Similarity=0.342 Sum_probs=162.8
Q ss_pred EEEecCCCCCCccccCCceEEeecCCCCCcEEE--EEEEecCCCCC--CCc-EEEEEeeCCCCCcEEE---ECCCc--EE
Q psy26 920 VYITDQNDNSPQFLRTPYKVQISEGASIGTQVF--RVSTMDADEGL--NGD-VYYKIISGNDDEHFSI---DEATG--QI 989 (1186)
Q Consensus 920 I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~--~v~a~D~D~~~--n~~-v~y~i~~g~~~~~F~I---d~~tG--~i 989 (1186)
.....+|-+.|... ..|...|.||.. ++++ -+.|-|.|.+. .+. --|.|.+ ..-.|.+ |..|| .|
T Consensus 21 ~~aarankhkpwie-~ey~gvV~Endn--tvll~Ppl~aLdkdaplr~ageiC~fklhg--q~vPFdavVvdK~TGegvl 95 (952)
T KOG1834|consen 21 HHAARANKHKPWIE-EEYHGVVTENDN--TVLLDPPLAALDKDAPLRYAGEICGFKLHG--QPVPFDAVVVDKYTGEGVL 95 (952)
T ss_pred cccccccccCcccc-cceeEEEEeCCc--eEEeCCCeeeecCCCCcccccccceeEecC--CCCCceEEEEeccCCceEE
Confidence 34556777888765 568999999864 3333 46788888632 222 3567754 3445654 76665 67
Q ss_pred EEccccCcccccEEEEEEEEEECCcccC---CCceeEEEEEEEEEeCCCCCCcccCCceEEEEeCCCCCCeEEEEEEEEe
Q psy26 990 TISKLLDRETVSKFNLKVLARDAATVVS---NQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATD 1066 (1186)
Q Consensus 990 ~~~~~lD~E~~~~y~l~V~a~D~~~~~~---~~~s~~~~v~I~V~dvNDn~P~f~~~~~~~~V~E~~~~g~~v~~v~A~D 1066 (1186)
+.+.+||-|.+..|+|+|+|.|.+.... ...|-.++|.|.|.|+|+.||+|..+.|.+.|.|.. .-..|+++.|.|
T Consensus 96 RaK~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK-~yd~il~veAiD 174 (952)
T KOG1834|consen 96 RAKEPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGK-VYDSILRVEAID 174 (952)
T ss_pred eecCcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecce-eeeeeEEEEeec
Confidence 8889999999999999999999873210 135668899999999999999999999999999975 456789999999
Q ss_pred CCCC-CCc-EEEEEEeeCCCCCcEEEeCCccEEEEcccCCcccccEEEEEEEEEECCCCCceEEEEEEEEEEe
Q psy26 1067 SDIG-VNN-EVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVED 1137 (1186)
Q Consensus 1067 ~D~g-~~~-~v~y~i~~g~~~~~F~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~d 1137 (1186)
.|-+ +++ ...|.|.. ..-.|.||. .|.|+.+.+|+|.....|.|+|+|.|.|..+..+...|+|.|..
T Consensus 175 ~DCspq~sqIC~YEI~t--~d~PFaIdn-~G~irnTekLny~ke~~Y~ltVtAyDCg~kraa~d~lV~v~Vkp 244 (952)
T KOG1834|consen 175 KDCSPQYSQICEYEITT--PDVPFAIDN-DGNIRNTEKLNYTKEHQYKLTVTAYDCGKKRAASDSLVTVHVKP 244 (952)
T ss_pred CCCCCcccceeEEEecC--CCCceEEcC-CCccccccccccccceeEEEEEEEEecccccccCcceEEEEecC
Confidence 9975 445 45788875 556899996 79999999999999999999999999998665666788888874
No 13
>TIGR01965 VCBS_repeat VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Probab=96.28 E-value=0.03 Score=50.91 Aligned_cols=88 Identities=24% Similarity=0.202 Sum_probs=59.8
Q ss_pred EEEEEecCCCCCCeeEEEEEEe-CCCCCceEEccceEEEEee--------cccccCCCeEEEEEEEEECCCCCceeeEeE
Q psy26 739 FELVAKDSDLGNNGFVSYSIIE-GNGEDKFGIFPDGFMYVRN--------SLDRETRDYYALTVLAEDHGKYPRSSSVPV 809 (1186)
Q Consensus 739 ~~v~a~D~D~g~n~~i~ysi~~-~~~~~~F~i~~~G~i~~~~--------~lD~E~~~~~~l~V~a~D~~~~~~s~~~~v 809 (1186)
++|.++|+|.+.. ..+++.. ....+.|.|+++|.....- .|..-....-+|+|++.|+. ..+|
T Consensus 2 G~Lt~sD~D~gd~--~~~s~~~~~g~yGtlti~~~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DGt------t~~v 73 (99)
T TIGR01965 2 GQLTISDADAGQA--HFIAQTDAAGQYGTFSIDADGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGT------SQTV 73 (99)
T ss_pred CceEEeCCCCCCc--eEEecccccCCcEEEEECCCCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCCC------eEEE
Confidence 4688899997654 4555531 2245779999988766542 23333334567888888962 6789
Q ss_pred EEEEeeCCCCCCeeeccceEEEEecCC
Q psy26 810 VIHIIDENDNKPEFSNSSFVFSVMENL 836 (1186)
Q Consensus 810 ~I~V~dvND~~P~f~~~~~~~~V~E~~ 836 (1186)
+|+|.-.|| +|+..... ...+.|+.
T Consensus 74 tItI~GtND-apvi~~~~-~g~v~ED~ 98 (99)
T TIGR01965 74 TITITGAND-AAVIGGAD-TGSVTEDS 98 (99)
T ss_pred EEEEEccCC-CCEEeccc-ceeEecCC
Confidence 999999999 88775443 56777764
No 14
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=96.18 E-value=0.073 Score=49.04 Aligned_cols=71 Identities=30% Similarity=0.331 Sum_probs=55.6
Q ss_pred EEEeCCCCCCcEEEEEEeeCC---CCCcEEEeCCccEEEEcccCCcccccEEEEEEEEEECCCCCceEEEEEEEEEEecC
Q psy26 1063 QATDSDIGVNNEVLFSIGSGN---KRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCN 1139 (1186)
Q Consensus 1063 ~A~D~D~g~~~~v~y~i~~g~---~~~~F~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~dvN 1139 (1186)
...|+| +..++|++...+ ...|.++|+.++.++-... .+..+.|.|.|+|+|+.+ .+....++|.|.+.|
T Consensus 23 tF~d~d---~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~GtP~--~~~~g~~~i~v~a~D~~g--~~~~~~f~i~V~~~~ 95 (97)
T smart00736 23 TFTDAD---GDTLTYSATLSDGSALPSWLSFDSDTGTLSGTPT--NSDVGSLSLKVTATDSSG--ASASDTFTITVVNTN 95 (97)
T ss_pred ceECCC---CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEECC--CCCCcEEEEEEEEEECCC--CEEEEEEEEEEeCCC
Confidence 457777 568999986432 3679999999988877532 334578999999999886 678889999999988
Q ss_pred C
Q psy26 1140 D 1140 (1186)
Q Consensus 1140 d 1140 (1186)
+
T Consensus 96 ~ 96 (97)
T smart00736 96 D 96 (97)
T ss_pred C
Confidence 7
No 15
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=96.09 E-value=0.049 Score=48.95 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=43.6
Q ss_pred CCCccCCceeEEEEecCCCCCcEEEEEEEecCCCCCCeeEEEEEEeCCCCCceEEccceEEEEeecccccCCCeEEEEEE
Q psy26 715 HTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPDGFMYVRNSLDRETRDYYALTVL 794 (1186)
Q Consensus 715 ~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~n~~i~ysi~~~~~~~~F~i~~~G~i~~~~~lD~E~~~~~~l~V~ 794 (1186)
.-|-|....|.+.|+.+...|..+++|.-.|-.. +..+.|.-. + ..|.|.++|.|++++++...... -.|.|.
T Consensus 2 C~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~--~~~~~~~ss--D--pdF~V~~DGsVy~~r~v~l~~~~-~~F~V~ 74 (90)
T PF08758_consen 2 CRPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTG--RRRVIFESS--D--PDFRVLEDGSVYAKRPVQLSSEQ-RSFTVH 74 (90)
T ss_dssp ---B--S-EEEE----SS-SS--EEE---B--SS-----EEEE-------SEEEEETTTEEEEES--S-SSS--EEEEEE
T ss_pred CcCCcccceEEEEcCchhhCCcEEEEEEeccCCC--CCceEEecC--C--CCEEEcCCCeEEEeeeEecCCCc-eEEEEE
Confidence 4588999999999999999999999999988753 556777643 3 28999999999999999875443 479999
Q ss_pred EEECCC
Q psy26 795 AEDHGK 800 (1186)
Q Consensus 795 a~D~~~ 800 (1186)
|.|..+
T Consensus 75 a~D~~~ 80 (90)
T PF08758_consen 75 AWDSQT 80 (90)
T ss_dssp EEETTT
T ss_pred EECCCC
Confidence 999876
No 16
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=95.86 E-value=0.016 Score=51.35 Aligned_cols=74 Identities=23% Similarity=0.470 Sum_probs=41.8
Q ss_pred eEEEEecCCCCCceEEEEEEEeCCCCCc--eEEEEEecC--CCCCeEEccCCceEEEeeccccccccccCCceEEEEEE
Q psy26 828 FVFSVMENLPPDSFVGKLIATDKDVGRN--AELSFALSN--AKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEA 902 (1186)
Q Consensus 828 ~~~~V~E~~~~gt~v~~v~a~D~D~g~n--~~l~y~l~~--~~~~F~Id~~tG~i~~~~~ld~e~~~~~~~~~~~~l~v 902 (1186)
...+|+|..++|++||.+. .|.-.... ....|++.. ...+|.++..+|.|.+...+|||.+......-.+.+.|
T Consensus 3 i~YsV~EE~~~Gt~IGnia-~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~LC~~~~~C~l~~ev 80 (84)
T PF08266_consen 3 IRYSVPEEMPPGTVIGNIA-KDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDREELCGQSSPCFLSFEV 80 (84)
T ss_dssp EEEEEESS--TT-EEEECC-CCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCCCC-TTSSS-EEEEEE
T ss_pred eEEEeecCCCCCCEEEEhH-HhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHHHHCCCCCCEEEEEEE
Confidence 3578999999999999984 44322110 112345443 34799999999999999999999875433333344443
No 17
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=95.78 E-value=0.0064 Score=53.83 Aligned_cols=64 Identities=23% Similarity=0.505 Sum_probs=41.8
Q ss_pred eEEEEcccccccccCCCceEEEEEEEcCCCcc-ccceEEEEEEeCCCCCceEEeCCccEEEeCccCCcccc
Q psy26 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQA-TIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQ 581 (1186)
Q Consensus 512 ~~~~v~e~~~~~~~~~g~~v~~v~~~d~d~~~-~~~~i~y~i~~g~~~~~F~Id~~tG~i~~~~~LD~E~~ 581 (1186)
..++|.|.. +.|+.||.+.. |..... ......|.|.+.....+|.+++.+|.|++...+|||+.
T Consensus 3 i~YsV~EE~-----~~Gt~IGnia~-dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~L 67 (84)
T PF08266_consen 3 IRYSVPEEM-----PPGTVIGNIAK-DLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDREEL 67 (84)
T ss_dssp EEEEEESS-------TT-EEEECCC-CCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCCCC
T ss_pred eEEEeecCC-----CCCCEEEEhHH-hhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHHHH
Confidence 468899998 99999999843 332211 12245678888777889999999999999999999974
No 18
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=95.71 E-value=0.096 Score=47.09 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=42.6
Q ss_pred CCccccCCceEEeecCCCCCcEEEEEEEecCCCCCCCcEEEEEeeCCCCCcEEEECCCcEEEEccccCcccccEEEEEEE
Q psy26 929 SPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVL 1008 (1186)
Q Consensus 929 ~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~n~~v~y~i~~g~~~~~F~Id~~tG~i~~~~~lD~E~~~~y~l~V~ 1008 (1186)
.|-|....|.+.|+.+...|..|++|.-.|-.. +..+.|... +..|.|.+ .|.|++++++.... ..-.|.|.
T Consensus 3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~--~~~~~~~ss----DpdF~V~~-DGsVy~~r~v~l~~-~~~~F~V~ 74 (90)
T PF08758_consen 3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTG--RRRVIFESS----DPDFRVLE-DGSVYAKRPVQLSS-EQRSFTVH 74 (90)
T ss_dssp --B--S-EEEE----SS-SS--EEE---B--SS-----EEEE-------SEEEEET-TTEEEEES--S-SS-S-EEEEEE
T ss_pred cCCcccceEEEEcCchhhCCcEEEEEEeccCCC--CCceEEecC----CCCEEEcC-CCeEEEeeeEecCC-CceEEEEE
Confidence 588999999999999999999999999999853 455777663 34899987 69999999987653 33589999
Q ss_pred EEECC
Q psy26 1009 ARDAA 1013 (1186)
Q Consensus 1009 a~D~~ 1013 (1186)
|.|..
T Consensus 75 a~D~~ 79 (90)
T PF08758_consen 75 AWDSQ 79 (90)
T ss_dssp EEETT
T ss_pred EECCC
Confidence 99988
No 19
>TIGR01965 VCBS_repeat VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Probab=95.65 E-value=0.11 Score=47.22 Aligned_cols=92 Identities=23% Similarity=0.273 Sum_probs=57.3
Q ss_pred EEEEEEeCCCCCceEEEEEecCC---CCCeEEccCCceEEEeecccc--ccccccCCceEEEEEEEEEeCCCCCceeEEE
Q psy26 843 GKLIATDKDVGRNAELSFALSNA---KGDFEIDSRNGFIKTMRSFDR--ENLLQTTGQNFISLEATVSDNGSPRLKDKVK 917 (1186)
Q Consensus 843 ~~v~a~D~D~g~n~~l~y~l~~~---~~~F~Id~~tG~i~~~~~ld~--e~~~~~~~~~~~~l~v~a~D~g~p~~s~~~~ 917 (1186)
|++.++|+|.+.. ..+++... -+.|.|++ +|.....-.-.. -..+.........|++++.|+. +.+
T Consensus 2 G~Lt~sD~D~gd~--~~~s~~~~~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DGt------t~~ 72 (99)
T TIGR01965 2 GQLTISDADAGQA--HFIAQTDAAGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGT------SQT 72 (99)
T ss_pred CceEEeCCCCCCc--eEEecccccCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCCC------eEE
Confidence 4688899997653 45555322 25688887 676554422110 0001111235678888889862 789
Q ss_pred EEEEEecCCCCCCccccCCceEEeecCC
Q psy26 918 VDVYITDQNDNSPQFLRTPYKVQISEGA 945 (1186)
Q Consensus 918 v~I~V~dvNd~~P~f~~~~~~~~v~E~~ 945 (1186)
|+|+|.-.|| +|+.... -...+.|+.
T Consensus 73 vtItI~GtND-apvi~~~-~~g~v~ED~ 98 (99)
T TIGR01965 73 VTITITGAND-AAVIGGA-DTGSVTEDS 98 (99)
T ss_pred EEEEEEccCC-CCEEecc-cceeEecCC
Confidence 9999999999 8877643 346676653
No 20
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=95.49 E-value=0.19 Score=46.25 Aligned_cols=71 Identities=28% Similarity=0.382 Sum_probs=54.9
Q ss_pred EEecCCCCCCCcEEEEEeeCC---CCCcEEEECCCcEEEEccccCcccccEEEEEEEEEECCcccCCCceeEEEEEEEEE
Q psy26 955 STMDADEGLNGDVYYKIISGN---DDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVL 1031 (1186)
Q Consensus 955 ~a~D~D~~~n~~v~y~i~~g~---~~~~F~Id~~tG~i~~~~~lD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~ 1031 (1186)
...|+| +..++|++...+ ...|.++|+.++.++-.. . .+..+.|.|.|.|+|+. +.+....++|.|.
T Consensus 23 tF~d~d---~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~GtP-~-~~~~g~~~i~v~a~D~~-----g~~~~~~f~i~V~ 92 (97)
T smart00736 23 TFTDAD---GDTLTYSATLSDGSALPSWLSFDSDTGTLSGTP-T-NSDVGSLSLKVTATDSS-----GASASDTFTITVV 92 (97)
T ss_pred ceECCC---CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEEC-C-CCCCcEEEEEEEEEECC-----CCEEEEEEEEEEe
Confidence 356777 367899986432 357899999998887743 2 23357799999999998 6788899999999
Q ss_pred eCCC
Q psy26 1032 DEND 1035 (1186)
Q Consensus 1032 dvND 1035 (1186)
+.|+
T Consensus 93 ~~~~ 96 (97)
T smart00736 93 NTND 96 (97)
T ss_pred CCCC
Confidence 9987
No 21
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=94.85 E-value=1.7 Score=43.97 Aligned_cols=128 Identities=22% Similarity=0.224 Sum_probs=74.8
Q ss_pred cccEEEEEE-EEEECCcccCCCceeEEEEEEEEEeCCCCCCcccCCceEEEEeCCCCC-CeEEEEEEEEeCCCCCCcEEE
Q psy26 999 TVSKFNLKV-LARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTV-NTQLFHFQATDSDIGVNNEVL 1076 (1186)
Q Consensus 999 ~~~~y~l~V-~a~D~~~~~~~~~s~~~~v~I~V~dvNDn~P~f~~~~~~~~V~E~~~~-g~~v~~v~A~D~D~g~~~~v~ 1076 (1186)
..+.|.+.+ .|.|.. +...+..+..++.- ...+|.+.- .....+..+..+ +..-..+.++|.-.+. ..-.
T Consensus 13 ~dG~Y~l~~~~a~D~a-----gN~~~~~~~~~~~i-D~T~Ptisi-~~~~~~~~g~~v~~~~~i~i~~tD~~~~~-~i~s 84 (158)
T PF13750_consen 13 PDGSYTLTVVTATDAA-----GNTSTSTVSETFTI-DNTPPTISI-SDGASVANGSTVYGLVNISINVTDNSDDS-KITS 84 (158)
T ss_pred CCccEEEEEEEEEecC-----CCEEEEEEeeEEEE-cCCCCEEEE-ecCCccCCCccccceeeeEEEEEeCCCCc-eEEE
Confidence 458899999 799988 45555555544432 234788754 111223333332 2233568888876543 4566
Q ss_pred EEEeeCCCCCcEEE--e-CCccEEEEccc---CCcccccEEEEEEEEEECCCCCceEEEEEEEEEE
Q psy26 1077 FSIGSGNKRDTFHM--D-PVTGILYLHKK---LDYEEINSYVLNVTASDGGTPRLSTIFMFTINVE 1136 (1186)
Q Consensus 1077 y~i~~g~~~~~F~i--d-~~tG~l~~~~~---ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~ 1136 (1186)
.+|.+|.....-.+ . ...|...+.-+ ...|....|.|+|.|+|..+ ..++..+.....
T Consensus 85 v~l~Gg~~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aG--N~~~~si~F~y~ 148 (158)
T PF13750_consen 85 VSLTGGPASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAG--NQSTKSISFSYM 148 (158)
T ss_pred EEEECCcccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEEecCC--CEEEEEEEEEEe
Confidence 77776654443332 1 12344433311 12366789999999999877 466666766655
No 22
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=94.26 E-value=2.3 Score=42.88 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=71.1
Q ss_pred CccEEEEEE-EEEeCCCCceeeEEEEEEEEEecCCCCCccCCceeEEEEecCCCC-CcEEEEEEEecCCCCCCeeEEEEE
Q psy26 681 PGSTLTIEI-VASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPV-NNRFFELVAKDSDLGNNGFVSYSI 758 (1186)
Q Consensus 681 ~~~~~~l~V-~a~D~g~~~~s~~~~v~I~V~DvND~~P~f~~~~~~~~v~E~~~~-g~~v~~v~a~D~D~g~n~~i~ysi 758 (1186)
..+.|.+++ .|+|..+...+.....++.| ...||.+.. .....+..+..+ +..-..+.++|.-.+. ...+.+|
T Consensus 13 ~dG~Y~l~~~~a~D~agN~~~~~~~~~~~i---D~T~Ptisi-~~~~~~~~g~~v~~~~~i~i~~tD~~~~~-~i~sv~l 87 (158)
T PF13750_consen 13 PDGSYTLTVVTATDAAGNTSTSTVSETFTI---DNTPPTISI-SDGASVANGSTVYGLVNISINVTDNSDDS-KITSVSL 87 (158)
T ss_pred CCccEEEEEEEEEecCCCEEEEEEeeEEEE---cCCCCEEEE-ecCCccCCCccccceeeeEEEEEeCCCCc-eEEEEEE
Confidence 356799999 79998754333333333443 345787654 112233333322 2233567777766543 4556777
Q ss_pred EeCCCCCceEEc--c--ceEEEEe--ec-ccccCCCeEEEEEEEEECCCCCceeeEeEEEEEe
Q psy26 759 IEGNGEDKFGIF--P--DGFMYVR--NS-LDRETRDYYALTVLAEDHGKYPRSSSVPVVIHII 814 (1186)
Q Consensus 759 ~~~~~~~~F~i~--~--~G~i~~~--~~-lD~E~~~~~~l~V~a~D~~~~~~s~~~~v~I~V~ 814 (1186)
.+|.......+. . .|...+. +. ...|....|+|+|.|+|..+ ..+...+.....
T Consensus 88 ~Gg~~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aG--N~~~~si~F~y~ 148 (158)
T PF13750_consen 88 TGGPASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAG--NQSTKSISFSYM 148 (158)
T ss_pred ECCcccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEEecCC--CEEEEEEEEEEe
Confidence 766544433222 2 3433332 11 13377889999999999877 355566666555
No 23
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=89.05 E-value=28 Score=44.76 Aligned_cols=165 Identities=20% Similarity=0.279 Sum_probs=85.6
Q ss_pred CCCCCCccccCCceEEeecCCCCCcEEEEEEEecCCCCCCCcEEEEEeeCCCC--CcEEEECCCcEEEEcc---------
Q psy26 925 QNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDD--EHFSIDEATGQITISK--------- 993 (1186)
Q Consensus 925 vNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~D~~~n~~v~y~i~~g~~~--~~F~Id~~tG~i~~~~--------- 993 (1186)
.||..+.|.-.+-...+.|+. |+.-..|.-...|.+..-.+.|+..+|... ..|. +..|.|+...
T Consensus 395 ~dd~~s~i~Fe~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~--~~sGTLtF~PGEt~KtItV 470 (928)
T TIGR00845 395 ENDPVSKIFFEPGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYE--FTEGTLVFKPGETQKEFRI 470 (928)
T ss_pred ccCCcceEEecCCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCcc--ccCceEEECCCceEEEEEE
Confidence 455555555455567788985 676666665544544345688888776543 2333 3456554431
Q ss_pred -ccC---cccccEEEEEEEEEECCc----c------cCCCceeEEEEEEEEEeCCCCCCcccCCceEEEEeCCCCCCeEE
Q psy26 994 -LLD---RETVSKFNLKVLARDAAT----V------VSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQL 1059 (1186)
Q Consensus 994 -~lD---~E~~~~y~l~V~a~D~~~----~------~~~~~s~~~~v~I~V~dvNDn~P~f~~~~~~~~V~E~~~~g~~v 1059 (1186)
-+| +|....|.+...--..+. . ....+......+|+|.| ||++|.|.-......|.|+. |..-
T Consensus 471 ~IIDDdi~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlD-DD~aGIfsFe~~~~sV~Es~--G~vt 547 (928)
T TIGR00845 471 GIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILD-DDHAGIFTFEEDVFHVSESI--GIME 547 (928)
T ss_pred EEccCCCCCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEec-CcccCcccccCceEEEEcCC--CEEE
Confidence 111 233344444332211110 0 00012233456777777 77899887665677888974 5544
Q ss_pred EEE-EEEeCCCCCCcEEEEEEeeCCCCC---cEEEeCCccEEEEc
Q psy26 1060 FHF-QATDSDIGVNNEVLFSIGSGNKRD---TFHMDPVTGILYLH 1100 (1186)
Q Consensus 1060 ~~v-~A~D~D~g~~~~v~y~i~~g~~~~---~F~id~~tG~l~~~ 1100 (1186)
.+| +..+.+ ..-.+.|....|.... -|. +.+|.|...
T Consensus 548 vtV~RtsGa~--G~VtV~Y~T~dGTA~aGg~DY~--~~sGtLtF~ 588 (928)
T TIGR00845 548 VKVLRTSGAR--GTVIVPYRTVEGTARGGGKDFE--DTCGELEFE 588 (928)
T ss_pred EEEEEcCCCC--eeEEEEEEeecCccCCCCCCcc--cccceEEEc
Confidence 443 333332 1235668777664422 233 346666554
No 24
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=86.05 E-value=2.6 Score=33.16 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCCCcEEEeCCccEEEEcccCCcc-cccEEEEEEEEEECCC
Q psy26 1083 NKRDTFHMDPVTGILYLHKKLDYE-EINSYVLNVTASDGGT 1122 (1186)
Q Consensus 1083 ~~~~~F~id~~tG~l~~~~~ld~e-~~~~~~l~V~a~D~g~ 1122 (1186)
....+..||+.+|.|+-... .. ..+.|.|.|+|+|+.+
T Consensus 11 ~LP~gLs~d~~tG~isGtp~--~~~~~G~y~~~vtatd~~G 49 (49)
T PF05345_consen 11 GLPSGLSLDPSTGTISGTPT--SSVQPGTYTFTVTATDGSG 49 (49)
T ss_pred CCCCcEEEeCCCCEEEeecC--CCccccEEEEEEEEEcCCC
Confidence 45778999999999988743 33 3479999999999753
No 25
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=85.99 E-value=59 Score=41.98 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=74.6
Q ss_pred CCCCCCeeeccceEEEEecCCCCCceEEEEEEEeCCCCCceEEEEEecCCC----CCeEEccCCceEEEeec--------
Q psy26 816 ENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAK----GDFEIDSRNGFIKTMRS-------- 883 (1186)
Q Consensus 816 vND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~g~n~~l~y~l~~~~----~~F~Id~~tG~i~~~~~-------- 883 (1186)
.||..+.|.-..-...|.|+. |++-..|.-.-.|.+....+.|+..++. ..|. +.+|.|.-...
T Consensus 395 ~dd~~s~i~Fe~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~--~~sGTLtF~PGEt~KtItV 470 (928)
T TIGR00845 395 ENDPVSKIFFEPGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYE--FTEGTLVFKPGETQKEFRI 470 (928)
T ss_pred ccCCcceEEecCCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCcc--ccCceEEECCCceEEEEEE
Confidence 455555554444457789986 6766666554445555567889887642 2333 23455433211
Q ss_pred --cccccccccCCceEEEEEEEEEeCC-------------CCCceeEEEEEEEEecCCCCCCccccCCceEEeecCCCCC
Q psy26 884 --FDRENLLQTTGQNFISLEATVSDNG-------------SPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIG 948 (1186)
Q Consensus 884 --ld~e~~~~~~~~~~~~l~v~a~D~g-------------~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g 948 (1186)
+|-.. ......|.+.+.--..+ ...+......+|+|.| ||++|.|.-..-...|.|+. |
T Consensus 471 ~IIDDdi---~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlD-DD~aGIfsFe~~~~sV~Es~--G 544 (928)
T TIGR00845 471 GIIDDDI---FEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILD-DDHAGIFTFEEDVFHVSESI--G 544 (928)
T ss_pred EEccCCC---CCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEec-CcccCcccccCceEEEEcCC--C
Confidence 11110 00123344433221111 0112233456777777 77899877655567888874 5
Q ss_pred cEEEEEE-EecCCCCCCCcEEEEEeeCC
Q psy26 949 TQVFRVS-TMDADEGLNGDVYYKIISGN 975 (1186)
Q Consensus 949 t~v~~v~-a~D~D~~~n~~v~y~i~~g~ 975 (1186)
+.-.+|. ..+.+ | .-.+.|...+|.
T Consensus 545 ~vtvtV~RtsGa~-G-~VtV~Y~T~dGT 570 (928)
T TIGR00845 545 IMEVKVLRTSGAR-G-TVIVPYRTVEGT 570 (928)
T ss_pred EEEEEEEEcCCCC-e-eEEEEEEeecCc
Confidence 5444443 22222 1 234567666554
No 26
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=75.98 E-value=8.9 Score=30.21 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=27.7
Q ss_pred CCCeEEccCCceEEEeeccccccccccCCceEEEEEEEEEeCC
Q psy26 866 KGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNG 908 (1186)
Q Consensus 866 ~~~F~Id~~tG~i~~~~~ld~e~~~~~~~~~~~~l~v~a~D~g 908 (1186)
..+..||+.+|.|.-...-.-+ ...|.++|+|+|+.
T Consensus 13 P~gLs~d~~tG~isGtp~~~~~-------~G~y~~~vtatd~~ 48 (49)
T PF05345_consen 13 PSGLSLDPSTGTISGTPTSSVQ-------PGTYTFTVTATDGS 48 (49)
T ss_pred CCcEEEeCCCCEEEeecCCCcc-------ccEEEEEEEEEcCC
Confidence 4789999999999877432222 36899999999974
No 27
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=71.46 E-value=1.9e+02 Score=32.95 Aligned_cols=132 Identities=20% Similarity=0.240 Sum_probs=63.4
Q ss_pred ceEEEEEEEEEeCCCCCceeEEEEEEEEecCCCCCCccccCCc--eEEeecCCCCCcEEEEEEEecCCCCCCCcEEEEEe
Q psy26 895 QNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPY--KVQISEGASIGTQVFRVSTMDADEGLNGDVYYKII 972 (1186)
Q Consensus 895 ~~~~~l~v~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~--~~~v~E~~~~gt~v~~v~a~D~D~~~n~~v~y~i~ 972 (1186)
.+.|.+.++++|..+. .+.....|.|-- .+|....... ...+.-........+...+++.+. +..+.+.+
T Consensus 11 d~~~~v~vt~tD~aGN--~~~~t~~~~vDt---~~P~v~i~~~~~~~~~~~~~~~~~~t~s~tvs~~~~--g~~v~v~~- 82 (317)
T PF13753_consen 11 DGTYTVSVTVTDAAGN--TSTATQSITVDT---TAPTVTITSIADDDIINGDEATNTVTFSGTVSGAEP--GSTVTVTI- 82 (317)
T ss_pred CCcEEEEEEEEeCCCC--eeeeeEEEEEec---CCCceeeecccCCCccccceeeeeeEEEEEecCCCC--CCEEEEEE-
Confidence 5789999999998643 333455555332 2664432210 000000001223344555555444 34566655
Q ss_pred eCCCCCcEEEECCCcEEEEcc-ccCcccccEEEEEEE-EEECCcccCCCceeEE-EEEEEEEeCCCCCCccc
Q psy26 973 SGNDDEHFSIDEATGQITISK-LLDRETVSKFNLKVL-ARDAATVVSNQLSSTT-MVTIDVLDENDNAPMFV 1041 (1186)
Q Consensus 973 ~g~~~~~F~Id~~tG~i~~~~-~lD~E~~~~y~l~V~-a~D~~~~~~~~~s~~~-~v~I~V~dvNDn~P~f~ 1041 (1186)
.| ....+..+ ..|..++.- +-+.-..+.|.+.+. ++|.. +..... ...+.|-..--.+|.+.
T Consensus 83 ~g-~~~t~~~~-~~G~ws~t~~~~~~l~~g~~ti~v~~~tD~a-----GN~~t~~s~~~~vDt~~~~~p~vt 147 (317)
T PF13753_consen 83 NG-TTGTLTAD-ADGNWSVTVTPSDDLPDGDYTITVTTVTDAA-----GNTSTAASQTFTVDTTAPTAPTVT 147 (317)
T ss_pred CC-EEEEEEEe-cCCcEEEeeccccccccCcceeEEEEEEccC-----Cccccccccccccccccccccccc
Confidence 22 22334444 345422221 111234568999999 99987 344443 55554443311256654
No 28
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=68.74 E-value=5.8e+02 Score=37.51 Aligned_cols=121 Identities=10% Similarity=0.092 Sum_probs=63.1
Q ss_pred ccEEEEEEEEEECCcccCCCceeEEEEEEEEEeCCCCCCcccCCceEEEEeCCCCCCeEEEEEE---EEeCCCCC--CcE
Q psy26 1000 VSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQ---ATDSDIGV--NNE 1074 (1186)
Q Consensus 1000 ~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~dvNDn~P~f~~~~~~~~V~E~~~~g~~v~~v~---A~D~D~g~--~~~ 1074 (1186)
.+.|.|.++++-.+ .| +.....+.+.|.--.= -+++.-.. .-++.++. -+.+. ..|||... .+.
T Consensus 2221 ~G~Y~~~~~Vs~~~--tp--l~~sa~~~L~V~~s~L-vAVI~GGt-~Rtvs~~~-----~L~LDGS~SyDPD~~~~~~~~ 2289 (2740)
T TIGR00864 2221 AGHYCFVFSLSFED--TP--LKKAACANLGVAAARL-MPIIEGGS-YRVWSDTQ-----DLQLDAEESYDPNLDDDDQSL 2289 (2740)
T ss_pred cceEEEEEEEEEcc--eE--eeeEEEEEEEEEcCCc-EEEEcCCC-cEEeccCc-----cEEEeCccccCCCCCCCCCCC
Confidence 47899988888777 43 5666666676654211 12222111 11232221 12333 47888643 333
Q ss_pred EEEEEee--CC--C----CCcEEEeCCccEEEEcc-cCCcccccEEEEEEEEEECCCCCceEEEEEEE
Q psy26 1075 VLFSIGS--GN--K----RDTFHMDPVTGILYLHK-KLDYEEINSYVLNVTASDGGTPRLSTIFMFTI 1133 (1186)
Q Consensus 1075 v~y~i~~--g~--~----~~~F~id~~tG~l~~~~-~ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I 1133 (1186)
+.|.-.. .+ . ...|.+......+.+.. .| .....|.|.++++-+|.++.+..++|.|
T Consensus 2290 L~Y~W~C~~~~~~~~~~c~~~~~~~ss~svltIp~~~L--~~g~~Y~F~L~VsK~gR~~~s~~QtI~V 2355 (2740)
T TIGR00864 2290 LHFHWACQASSKGEAGCCALNFGLGGKGPTLGIPGEEL--AAGIEYTFKLSIGKAGMKEEATNQTVLI 2355 (2740)
T ss_pred cEEEEEEEECCCCCCCccccCccccccCceEEEcHHHc--CCCcEEEEEEEEEeCCCCccceeEEEEE
Confidence 6665432 11 1 12244333223343322 23 2334799999999988877776666655
No 29
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=68.05 E-value=9.1 Score=46.02 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred ceEEEEEEEEEeCCCCCceeEEEEEEEEecCCCCCCccccCCceEEeecCCCCCcEEEEEEEecC-CCCCCCcEEEEEee
Q psy26 895 QNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDA-DEGLNGDVYYKIIS 973 (1186)
Q Consensus 895 ~~~~~l~v~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~v~a~D~-D~~~n~~v~y~i~~ 973 (1186)
+..|.|++.|+|.+.. ...+.+.+.+ |- +|.-- ...+.=.++.. ....+++.+.+- |. +..++|.+.-
T Consensus 272 g~~Y~~~l~v~~~~~~--~~~a~~~~~~---n~-pP~~g--~c~v~P~~G~a-l~T~Ft~~c~~~~d~--~~pL~Y~f~~ 340 (440)
T PF02010_consen 272 GSTYTFRLTVTDSSGS--SGSASISFTV---NA-PPSGG--SCSVSPSSGYA-LETTFTITCSGWTDD--DQPLTYQFYY 340 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccc--cccccccccc---cc-ccccc--ccccccccccc-ccccccccccccccc--cccccccccc
Confidence 4789999999998632 2255555555 33 66421 11222222221 223455666554 33 2357776643
Q ss_pred ---CCCCCcEEEECC-CcE-EEEccccCccc-ccEEEEEEEEEECCcccCCCceeEEEEEEEEEeC
Q psy26 974 ---GNDDEHFSIDEA-TGQ-ITISKLLDRET-VSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDE 1033 (1186)
Q Consensus 974 ---g~~~~~F~Id~~-tG~-i~~~~~lD~E~-~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~dv 1033 (1186)
......+.+-.. ... +.+.-+.-.+. .....+.|.+.|.. +..+...+.|+|.-.
T Consensus 341 ~~~~~~~~~~~L~~~~~~~~~~~~LP~g~~~~~~~~~i~v~V~D~~-----ga~~~~~~~V~V~~~ 401 (440)
T PF02010_consen 341 SSDDGSGSWNLLYEGSSPSSISTYLPPGDENNDYNVTIYVQVCDSL-----GACSNVTVTVTVTPP 401 (440)
T ss_dssp ------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccc
Confidence 112222333110 000 01111111111 12456777888876 455566667776543
No 30
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=65.68 E-value=43 Score=32.85 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=46.4
Q ss_pred CCCeEEEEEeCCCCCeeEEEEEEccCCcccc---ccEEEEEEEEEECCcCCeEEEEEEEEEEEecCCCCCccccCCCeeE
Q psy26 16 LQNSKAKVTANPSGETSYLYLQTTGKLDRET---VDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYS 92 (1186)
Q Consensus 16 ~~~f~~~~~~~~~g~~~~~~l~~~~~LD~E~---~~~y~l~v~a~D~~~~~~~~~~~v~i~V~DvND~~P~f~~~~~~y~ 92 (1186)
...|++... ..|.. ...+.++||+.. .-...|.|.|+|..+-.. ...+.|+|.| |. |+... .. .
T Consensus 55 ~~Vftvtl~--~~GsY---tftL~~~lDH~~g~d~l~l~~~v~a~D~DGD~s--~~~l~VtI~D--D~-P~~~~--~~-~ 121 (137)
T TIGR03660 55 NPVFTLTLN--ADGSY---EFTLEGPLDHAAGSDELTLNFPIIATDFDGDTS--SITLPVTIVD--DV-PTITD--VD-A 121 (137)
T ss_pred cEEEEEEEC--CCccE---EEEEcccccCCCCCceEEEeeeEEEEeCCCCcc--ccEEEEEEEC--CC-Ceecc--cc-c
Confidence 456777653 35643 367789999853 345778999999766433 3477788877 54 77665 22 4
Q ss_pred EEEeCCC
Q psy26 93 VSLNESV 99 (1186)
Q Consensus 93 ~~v~E~~ 99 (1186)
.+|.|+.
T Consensus 122 ~~V~E~~ 128 (137)
T TIGR03660 122 LTVDEDD 128 (137)
T ss_pred eEEeccc
Confidence 7888854
No 31
>KOG3597|consensus
Probab=65.31 E-value=2.9e+02 Score=32.81 Aligned_cols=164 Identities=17% Similarity=0.147 Sum_probs=85.8
Q ss_pred eeEeEEEEEeeCCCCCCeeeccceEEEEecCCCCCceEEEEEEEeCCCCCceEEEEEecCCCCC------eEEccCCceE
Q psy26 805 SSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGD------FEIDSRNGFI 878 (1186)
Q Consensus 805 ~~~~v~I~V~dvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~g~n~~l~y~l~~~~~~------F~Id~~tG~i 878 (1186)
.+....|.|..+||.+..+....+.+-+.|+...-...-.+.+.|+|.+. ..+.|++....+. |..-...+.-
T Consensus 24 ~~~~~~i~v~pvndpp~~~~~~~~~l~~~~~~~k~l~~~~l~~~d~d~~~-~~l~f~v~~t~~~~~~~~~~~~~g~~~~~ 102 (442)
T KOG3597|consen 24 QTDVLRIHVNPVNDPPSLIFPSGSLLVILEGGQKVLDPELLTAADPDSAP-LPLEFQVLGTSSVPLPVLKFDVPGAPATE 102 (442)
T ss_pred EEeeecccccccCCCcceeecccceEEeecCCceeccceEeeccCCCCCc-cceEEEEccCCCCCCccceeeccCCcccc
Confidence 34568899999999666666666667778876544444578889999764 4678888764321 3332222211
Q ss_pred EEeecccccccc-cc--CCceEEEEEEEEEeCCCCCceeEEEEEEEEecCCCCCCccccC-CceEEeecCCCCCcEEEEE
Q psy26 879 KTMRSFDRENLL-QT--TGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRT-PYKVQISEGASIGTQVFRV 954 (1186)
Q Consensus 879 ~~~~~ld~e~~~-~~--~~~~~~~l~v~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~~v~E~~~~gt~v~~v 954 (1186)
...+.+.-+.+. .+ ..-....++..++|+- ..+. .+..... ...|.+... .....+.-+...--.-..+
T Consensus 103 Fs~~~v~~g~~~yvh~g~el~~~~~~~~~SDg~---~~S~-~~i~~~~---~~~~~~~~~~~~gL~v~~gS~~~IT~~~L 175 (442)
T KOG3597|consen 103 FSYEEVEDGSLSYVHSGTELRESELQLRVSDGL---LVSE-RAILKVE---ATGPAPHLARNTGLKVLQGSTAPITPSNL 175 (442)
T ss_pred eEehHhhcCceeEEecCcccccceEEEEeecce---Eeee-eEEeccc---CCCcceeeecccceEEccCccccccHhHc
Confidence 111111111000 00 0135567788888873 2222 1111111 123333211 1233444333221112347
Q ss_pred EEecCCCCCCCcEEEEEeeCCC
Q psy26 955 STMDADEGLNGDVYYKIISGND 976 (1186)
Q Consensus 955 ~a~D~D~~~n~~v~y~i~~g~~ 976 (1186)
.+.|.|.+....+.|.|..+..
T Consensus 176 ~ved~d~~~d~~v~~~i~~~P~ 197 (442)
T KOG3597|consen 176 SVEDNDSSPDDEVRYDITPPPQ 197 (442)
T ss_pred eeecCCCCCCcEEEEEecCCCC
Confidence 7888886666789999976443
No 32
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=64.10 E-value=8.2 Score=46.43 Aligned_cols=261 Identities=14% Similarity=0.140 Sum_probs=17.5
Q ss_pred eEEEEEEEEEeCCCCCceeEEEEEEEEecCCCCCCccccCCceEEeecCCCCCcEEEE-EEEecCCCCC-CCcEEEEEe-
Q psy26 896 NFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFR-VSTMDADEGL-NGDVYYKII- 972 (1186)
Q Consensus 896 ~~~~l~v~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~gt~v~~-v~a~D~D~~~-n~~v~y~i~- 972 (1186)
+.|.+.++++-...+.......+.|.|...+= .|....... ..+.-+ ....+. -.-.|+|... +..++|...
T Consensus 50 G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l-~~~I~gG~~-~~~~~~---~~i~ldgs~S~Dpd~~~~~~~l~y~W~C 124 (440)
T PF02010_consen 50 GDYTFTLTVTASSNPGLSSTDSVTVTVEPSPL-VAVIKGGSS-RTVGYN---SDITLDGSQSYDPDGPPGDSGLTYSWSC 124 (440)
T ss_dssp CEEEEEEEEE--BCTTEEEEEEEEEEEE----------------------------------------------------
T ss_pred CCEEEEEEEEEECCCCceEEEEEEEEEeeccc-eeEEcCCcc-ceeecC---ceEEEeeEEEecccccccCCceEEEEEE
Confidence 45555555551233377888888888886221 232222111 111111 111111 1235777532 134566542
Q ss_pred -eCCCC--------CcEEEECCCcEEEEc-cccCcccccEEEEEEEEEECCcccCCCceeEEEEEEEEEeCCCCCCcccC
Q psy26 973 -SGNDD--------EHFSIDEATGQITIS-KLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVK 1042 (1186)
Q Consensus 973 -~g~~~--------~~F~Id~~tG~i~~~-~~lD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~dvNDn~P~f~~ 1042 (1186)
..... .........+.+++. ..| +....|.|++++++++ ..+..+..+|.+..- .+|...-
T Consensus 125 ~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l--~~~~~y~f~ltv~k~~-----r~s~s~~~~v~v~~~--~~p~v~I 195 (440)
T PF02010_consen 125 TDLSSNSACSTPSTNITLLNSSSSSLTIPASTL--SPGSTYTFTLTVSKGS-----RSSSSASQTVTVVSG--DPPTVSI 195 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCCceeccccccccccccCCCCCEEEEEEhHHc--CCCceEEEEEEEEeCC-----CCceeeEEEEEeccC--CCCceeE
Confidence 21111 011123334455543 233 2333499999999988 456677777777653 3565432
Q ss_pred CceE---EEEeCCCCCCeEEEEEEEEeCCC-CCCcEEEEEEe--eCC--CCCcEE------EeCCcc-EEEEcccCCccc
Q psy26 1043 TESK---ISVYENTTVNTQLFHFQATDSDI-GVNNEVLFSIG--SGN--KRDTFH------MDPVTG-ILYLHKKLDYEE 1107 (1186)
Q Consensus 1043 ~~~~---~~V~E~~~~g~~v~~v~A~D~D~-g~~~~v~y~i~--~g~--~~~~F~------id~~tG-~l~~~~~ld~e~ 1107 (1186)
.... ..|..+ ....++..+.+.+. ...-...+++. .+. ....|. ....++ .|.+.. --.+.
T Consensus 196 ~~~~n~~~~vn~~---~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~-~~l~~ 271 (440)
T PF02010_consen 196 SCVSNCKGKVNPS---ERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDP-GVLEP 271 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCCC---CCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccccccccccccccccccc-ccccc
Confidence 2100 112222 12334555554432 22333444550 000 001111 111111 122221 12345
Q ss_pred ccEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCccCCCceEEEEecCCCCCcEEEEEEEeeC-CCCCCceEEEEeC
Q psy26 1108 INSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINTINVPITFKKL-KKKKKKKMLCSSG 1185 (1186)
Q Consensus 1108 ~~~~~l~V~a~D~g~p~~s~~~~v~I~V~dvNd~~P~f~~~~~~~~v~e~~~~g~~v~~v~a~D~-D~~~n~~~~y~i~ 1185 (1186)
...|.|.+.|+|.++. ...+.+.+.+ |- +|.--.... .-.+. ......+++.+.+- |.. ..|+|.|+
T Consensus 272 g~~Y~~~l~v~~~~~~--~~~a~~~~~~---n~-pP~~g~c~v--~P~~G-~al~T~Ft~~c~~~~d~~--~pL~Y~f~ 339 (440)
T PF02010_consen 272 GSTYTFRLTVTDSSGS--SGSASISFTV---NA-PPSGGSCSV--SPSSG-YALETTFTITCSGWTDDD--QPLTYQFY 339 (440)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cccccccccccccccc--cccccccccc---cc-ccccccccc--ccccc-cccccccccccccccccc--cccccccc
Confidence 5789999999998762 2255556655 33 664322111 11111 11223355666544 322 36888875
No 33
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=60.68 E-value=1.1e+02 Score=27.92 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCCcccCCceEEEEeCCCCCCeEEEEEEEEeCCCCCCcEEEEEEeeCC
Q psy26 1027 TIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGN 1083 (1186)
Q Consensus 1027 ~I~V~dvNDn~P~f~~~~~~~~V~E~~~~g~~v~~v~A~D~D~g~~~~v~y~i~~g~ 1083 (1186)
+|+|.| || .|.+.-......+.|+. |.....|.-...+....-.+.|...+|.
T Consensus 2 tvtI~d-~d-~~~v~f~~~~~~v~E~~--~~~~v~V~~~~~~~~~~v~v~~~~~~gt 54 (100)
T PF03160_consen 2 TVTILD-DD-DPTVSFSSPSYTVSEGD--GTVTVTVTRSGGSLDGPVTVNYSTVDGT 54 (100)
T ss_dssp EEEEE--TT-SEEEEESSSEEEEETTS--SEEEEEEEEESS-TSSEEEEEEEEEESS
T ss_pred EEEEEC-CC-CCEEEEeCCEEEEEeCC--CEEEEEEEEcccCCCcceEEEEEEeCCc
Confidence 577788 77 45777666677888885 4444555555443223446677766653
No 34
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=60.58 E-value=72 Score=31.32 Aligned_cols=55 Identities=22% Similarity=0.394 Sum_probs=36.3
Q ss_pred EEccccCcc---cccEEEEEEEEEECCcccCCCceeEEEEEEEEEeCCCCCCcccCCceEEEEeCCC
Q psy26 990 TISKLLDRE---TVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENT 1053 (1186)
Q Consensus 990 ~~~~~lD~E---~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~dvNDn~P~f~~~~~~~~V~E~~ 1053 (1186)
++.++||.. ..-...|.|.|+|.. +-.++..+.|+|.| | .|...... ..+|.|+.
T Consensus 71 tL~~~lDH~~g~d~l~l~~~v~a~D~D-----GD~s~~~l~VtI~D--D-~P~~~~~~-~~~V~E~~ 128 (137)
T TIGR03660 71 TLEGPLDHAAGSDELTLNFPIIATDFD-----GDTSSITLPVTIVD--D-VPTITDVD-ALTVDEDD 128 (137)
T ss_pred EEcccccCCCCCceEEEeeeEEEEeCC-----CCccccEEEEEEEC--C-CCeecccc-ceEEeccc
Confidence 344555542 334578889999987 44455688888887 6 68876543 46888853
No 35
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=59.37 E-value=93 Score=25.74 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=33.5
Q ss_pred CCceEEEEEecCCC-CCeEEccCCceEEEeeccccccccccCCceEEEEEEEEEeCCCCCceeEEEEEEEEe
Q psy26 853 GRNAELSFALSNAK-GDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYIT 923 (1186)
Q Consensus 853 g~n~~l~y~l~~~~-~~F~Id~~tG~i~~~~~ld~e~~~~~~~~~~~~l~v~a~D~g~p~~s~~~~v~I~V~ 923 (1186)
+.+-...|.|.+.+ .|..+...+-.+... .|. .+.|+|.|.|.|..........++.|.|.
T Consensus 5 ~~~~~Y~Y~l~g~d~~W~~~~~~~~~~~~~-~L~---------~G~Y~l~V~a~~~~~~~~~~~~~l~i~I~ 66 (66)
T PF07495_consen 5 PENIRYRYRLEGFDDEWITLGSYSNSISYT-NLP---------PGKYTLEVRAKDNNGKWSSDEKSLTITIL 66 (66)
T ss_dssp CTTEEEEEEEETTESSEEEESSTS-EEEEE-S-----------SEEEEEEEEEEETTS-B-SS-EEEEEEEE
T ss_pred CCceEEEEEEECCCCeEEECCCCcEEEEEE-eCC---------CEEEEEEEEEECCCCCcCcccEEEEEEEC
Confidence 34557788887654 344443322133222 121 58899999999976543333366776663
No 36
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=58.42 E-value=3.2e+02 Score=31.02 Aligned_cols=111 Identities=15% Similarity=0.252 Sum_probs=50.2
Q ss_pred ccEEEEEEEEEe-CCceeEEEEEEEEEeCCCCCCeecCCC--CCcccCCCCCCCcEEEEEEEEeCCCCCCceEEEEEecC
Q psy26 581 QSIYNLVVSARS-RLSYGKTFVNITLLDLNDNAPIFNRDK--DEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSN 657 (1186)
Q Consensus 581 ~~~~~l~V~a~d-~~~~~~~~v~I~V~DvNDn~P~f~~~~--~~~~V~E~~~~gt~v~~v~a~D~D~~~n~~v~ysl~~~ 657 (1186)
...|.+.+.++| .+........+.| |. .+|...-.. ....+.-........+...+++.+. +..+.+++.+.
T Consensus 11 d~~~~v~vt~tD~aGN~~~~t~~~~v-Dt--~~P~v~i~~~~~~~~~~~~~~~~~~t~s~tvs~~~~--g~~v~v~~~g~ 85 (317)
T PF13753_consen 11 DGTYTVSVTVTDAAGNTSTATQSITV-DT--TAPTVTITSIADDDIINGDEATNTVTFSGTVSGAEP--GSTVTVTINGT 85 (317)
T ss_pred CCcEEEEEEEEeCCCCeeeeeEEEEE-ec--CCCceeeecccCCCccccceeeeeeEEEEEecCCCC--CCEEEEEECCE
Confidence 356888999999 2333334455553 22 266443321 0001111101122334445544443 34566666321
Q ss_pred CCCCeEEEceecEEEE-cccCCCCCccEEEEEEE-EEeCCCCc
Q psy26 658 PDDQFKIVETNGVIYL-NKPIQSPPGSTLTIEIV-ASDSGKQS 698 (1186)
Q Consensus 658 ~~~~F~id~~tG~i~~-~~~ld~e~~~~~~l~V~-a~D~g~~~ 698 (1186)
...+..+ ..|.-.+ ..+-+.-....|.+.+. ++|..+..
T Consensus 86 -~~t~~~~-~~G~ws~t~~~~~~l~~g~~ti~v~~~tD~aGN~ 126 (317)
T PF13753_consen 86 -TGTLTAD-ADGNWSVTVTPSDDLPDGDYTITVTTVTDAAGNT 126 (317)
T ss_pred -EEEEEEe-cCCcEEEeeccccccccCcceeEEEEEEccCCcc
Confidence 1223333 2342111 11111223457899998 99987543
No 37
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=55.29 E-value=95 Score=25.68 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=33.6
Q ss_pred CcEEEEEEeeCCCCCcEEEeCCccEEEEcccCCcccccEEEEEEEEEECCCCCceEEEEEEEEE
Q psy26 1072 NNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINV 1135 (1186)
Q Consensus 1072 ~~~v~y~i~~g~~~~~F~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V 1135 (1186)
+-...|.|.+ -...|..+...+-.+.... ...+.|.|.|+|.|..+.......++.|.|
T Consensus 7 ~~~Y~Y~l~g-~d~~W~~~~~~~~~~~~~~----L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 7 NIRYRYRLEG-FDDEWITLGSYSNSISYTN----LPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp TEEEEEEEET-TESSEEEESSTS-EEEEES------SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred ceEEEEEEEC-CCCeEEECCCCcEEEEEEe----CCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 4456677764 3455666654322444443 356899999999997664333335666665
No 38
>KOG3597|consensus
Probab=43.45 E-value=6.4e+02 Score=30.06 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=88.7
Q ss_pred eEEEEEEEEEecCCCCCccCCceeEEEEecCCCCCcEEEEEEEecCCCCCCeeEEEEEEeCCCC--------------Cc
Q psy26 701 SKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGE--------------DK 766 (1186)
Q Consensus 701 ~~~~v~I~V~DvND~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~n~~i~ysi~~~~~~--------------~~ 766 (1186)
.+....|.|..+||.+..+....+...+.|+...-.....+.+.|+|.+. ..+.|++.+.... ..
T Consensus 24 ~~~~~~i~v~pvndpp~~~~~~~~~l~~~~~~~k~l~~~~l~~~d~d~~~-~~l~f~v~~t~~~~~~~~~~~~~g~~~~~ 102 (442)
T KOG3597|consen 24 QTDVLRIHVNPVNDPPSLIFPSGSLLVILEGGQKVLDPELLTAADPDSAP-LPLEFQVLGTSSVPLPVLKFDVPGAPATE 102 (442)
T ss_pred EEeeecccccccCCCcceeecccceEEeecCCceeccceEeeccCCCCCc-cceEEEEccCCCCCCccceeeccCCcccc
Confidence 45568899999999888777766778888887655556778889998753 4577887743221 22
Q ss_pred eEEcc--ceEEEEeeccccc--CCCeEEEEEEEEECCCCCceeeEeEEEEEeeCCCCCCeeeccceEEEEecCCCCCceE
Q psy26 767 FGIFP--DGFMYVRNSLDRE--TRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFV 842 (1186)
Q Consensus 767 F~i~~--~G~i~~~~~lD~E--~~~~~~l~V~a~D~~~~~~s~~~~v~I~V~dvND~~P~f~~~~~~~~V~E~~~~gt~v 842 (1186)
|+-.. .|.+.+ ++. +...+.++..++|+-. .+. .+.......- -+|.+.... ...|.-++..-..-
T Consensus 103 Fs~~~v~~g~~~y----vh~g~el~~~~~~~~~SDg~~---~S~-~~i~~~~~~~-~~~~~~~~~-gL~v~~gS~~~IT~ 172 (442)
T KOG3597|consen 103 FSYEEVEDGSLSY----VHSGTELRESELQLRVSDGLL---VSE-RAILKVEATG-PAPHLARNT-GLKVLQGSTAPITP 172 (442)
T ss_pred eEehHhhcCceeE----EecCcccccceEEEEeecceE---eee-eEEecccCCC-cceeeeccc-ceEEccCccccccH
Confidence 32222 333332 222 3556788888888754 111 1211111111 122232221 23333332221112
Q ss_pred EEEEEEeCCCCCceEEEEEecCCC
Q psy26 843 GKLIATDKDVGRNAELSFALSNAK 866 (1186)
Q Consensus 843 ~~v~a~D~D~g~n~~l~y~l~~~~ 866 (1186)
..+.+.|.|.+..-.+.|.|....
T Consensus 173 ~~L~ved~d~~~d~~v~~~i~~~P 196 (442)
T KOG3597|consen 173 SNLSVEDNDSSPDDEVRYDITPPP 196 (442)
T ss_pred hHceeecCCCCCCcEEEEEecCCC
Confidence 368888998766678899987653
No 39
>KOG4221|consensus
Probab=35.78 E-value=1.3e+03 Score=31.24 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=72.0
Q ss_pred ccEEEEEEEEEe--CCceeEEEEEEEEEeCCCCCCeecCCCCCcccCCCCCCCcEEEEEEEEeCCCCCCceEEEEEe---
Q psy26 581 QSIYNLVVSARS--RLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLS--- 655 (1186)
Q Consensus 581 ~~~~~l~V~a~d--~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~~~n~~v~ysl~--- 655 (1186)
...|.+.|.|.. |...++..+.|+-. -| +|.- ...+ ..+..-..++-.-+-.+....+.|.+.
T Consensus 493 ~t~Y~~rv~A~n~~g~g~sS~pLkV~t~--pE-gp~~-~~a~--------ats~~ti~v~WepP~~~n~~I~~yk~~ys~ 560 (1381)
T KOG4221|consen 493 LTMYFFRVRAKNEAGSGESSAPLKVTTQ--PE-GPVQ-LQAY--------ATSPTTILVTWEPPPFGNGPITGYKLFYSE 560 (1381)
T ss_pred ceeEEEEEeccCcccCCccCCceEEecC--CC-CCcc-cccc--------ccCcceEEEEecCCCCCCCCceEEEEEEEc
Confidence 357888888877 44444444544422 12 2222 1111 112222223333333332223345543
Q ss_pred cCCCCCeEEEceecEEEEcccCCCCCccEEEEEEEEEeCCCCceeeEEEEEEEEEecCCCCCc
Q psy26 656 SNPDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPV 718 (1186)
Q Consensus 656 ~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~V~DvND~~P~ 718 (1186)
.+....+.++..+-..++. +.++...|.+.|+|....|++.++...-.++..|+-+.||.
T Consensus 561 ~~~~~~~~~~~n~~e~ti~---gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~ 620 (1381)
T KOG4221|consen 561 DDTGKELRVENNATEYTIN---GLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQ 620 (1381)
T ss_pred CCCCceEEEecCccEEEee---cCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCc
Confidence 2356678887766666555 34667789999999999998888877777788888888886
No 40
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=32.07 E-value=3.9e+02 Score=24.21 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=28.4
Q ss_pred EEEEeeCCCCCCeeeccceEEEEecCCCCCceEEEEEEEeCCCCCceEEEEEecC
Q psy26 810 VIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSN 864 (1186)
Q Consensus 810 ~I~V~dvND~~P~f~~~~~~~~V~E~~~~gt~v~~v~a~D~D~g~n~~l~y~l~~ 864 (1186)
+|+|.| ||.+ .+.-..-...+.|+. |..-..+.....+....-.+.|...+
T Consensus 2 tvtI~d-~d~~-~v~f~~~~~~v~E~~--~~~~v~V~~~~~~~~~~v~v~~~~~~ 52 (100)
T PF03160_consen 2 TVTILD-DDDP-TVSFSSPSYTVSEGD--GTVTVTVTRSGGSLDGPVTVNYSTVD 52 (100)
T ss_dssp EEEEE--TTSE-EEEESSSEEEEETTS--SEEEEEEEEESS-TSSEEEEEEEEEE
T ss_pred EEEEEC-CCCC-EEEEeCCEEEEEeCC--CEEEEEEEEcccCCCcceEEEEEEeC
Confidence 466777 6644 776655567888986 44444454444443334456666544
No 41
>KOG4221|consensus
Probab=31.06 E-value=1.5e+03 Score=30.64 Aligned_cols=240 Identities=14% Similarity=0.170 Sum_probs=111.4
Q ss_pred CCCceEEeCCccEEEeCccCCcccccEEEEEEEEEeCCceeEEEEEEEEEeCCCCCCeecCCCCCcccCCC----CCCCc
Q psy26 557 PKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPEN----AAVGQ 632 (1186)
Q Consensus 557 ~~~~F~Id~~tG~i~~~~~LD~E~~~~~~l~V~a~d~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~V~E~----~~~gt 632 (1186)
+.++|.|.+..+ +.+...++-++ ..|.+.-+..-|...+.+.+.|-. .|.|..... +...+- .+.++
T Consensus 371 psdy~ki~~~~~-lrIlgi~~sde-g~yQcvaen~~G~a~a~a~l~vv~------~p~~~~s~~-~~sap~~lv~~~~~s 441 (1381)
T KOG4221|consen 371 PSDYFKIVGGGN-LRILGIVKSDE-GFYQCVAENDAGSAQAAAQLEVVP------QPASASSDL-LPSAPRDLVANLVSS 441 (1381)
T ss_pred cccceEecCCCC-cEEEEEecccc-hhhhhhhccCcccccchhhheecc------CCcccccCc-cccCCcceecccccc
Confidence 467899987655 66555554433 223222111113333333332222 244332211 111111 12344
Q ss_pred EEEEEEEEeCCCCCCceEEEEEecC---CCC-CeEEEceecEEEEcccCCCCCccEEEEEEEEEeCCCCceeeEEEEEEE
Q psy26 633 EIYVARARDRDSGVNSRIFYSLSSN---PDD-QFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVY 708 (1186)
Q Consensus 633 ~v~~v~a~D~D~~~n~~v~ysl~~~---~~~-~F~id~~tG~i~~~~~ld~e~~~~~~l~V~a~D~g~~~~s~~~~v~I~ 708 (1186)
...+++..-+=...+...+|++... +.. .-.-....|.+.....|- ....|.|.|+|....+.+. +++.+.|
T Consensus 442 rfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~--p~t~Y~~rv~A~n~~g~g~-sS~pLkV- 517 (1381)
T KOG4221|consen 442 RFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLS--PLTMYFFRVRAKNEAGSGE-SSAPLKV- 517 (1381)
T ss_pred eeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecc--cceeEEEEEeccCcccCCc-cCCceEE-
Confidence 5555555422222234455655421 111 111112345444444553 4467999999988765433 3333444
Q ss_pred EEecCCCCCccCCceeEEEEecCCCCCcEEEEEEEecCCCCCCeeEEEEEE--eCCCCCceEEccceEEEEeecccccCC
Q psy26 709 IQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSII--EGNGEDKFGIFPDGFMYVRNSLDRETR 786 (1186)
Q Consensus 709 V~DvND~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~n~~i~ysi~--~~~~~~~F~i~~~G~i~~~~~lD~E~~ 786 (1186)
.---+ +|.- ...|. .+..-..+.-.-+-.+......|.+- .++....+.++.++.=+... +.|..
T Consensus 518 -~t~pE-gp~~-~~a~a--------ts~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~--gL~k~ 584 (1381)
T KOG4221|consen 518 -TTQPE-GPVQ-LQAYA--------TSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTIN--GLEKY 584 (1381)
T ss_pred -ecCCC-CCcc-ccccc--------cCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEee--cCCCc
Confidence 32222 2222 11121 11112223333232221122334432 22445566666543222222 44666
Q ss_pred CeEEEEEEEEECCCCCceeeEeEEEEEeeCCCCCCe
Q psy26 787 DYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPE 822 (1186)
Q Consensus 787 ~~~~l~V~a~D~~~~~~s~~~~v~I~V~dvND~~P~ 822 (1186)
..|.+.|.|....++..++...-.++..|+-+.||.
T Consensus 585 TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~ 620 (1381)
T KOG4221|consen 585 TEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQ 620 (1381)
T ss_pred cceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCc
Confidence 789999999998887777666566778888887776
No 42
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=23.83 E-value=1.3e+02 Score=27.93 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=24.5
Q ss_pred ccCcccccEEEEEEEEEECCcccCCCceeEEEEEEEEEe
Q psy26 994 LLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032 (1186)
Q Consensus 994 ~lD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~d 1032 (1186)
.+++...+.|+++|.++|.. +-+.++.+.|.|-|
T Consensus 73 t~~v~kgG~y~m~V~lCn~d-----GCS~S~~~~I~VAD 106 (106)
T cd02848 73 TFKVGKGGRYQMQVALCNGD-----GCSTSAAKEIVVAD 106 (106)
T ss_pred EEEeCCCCeEEEEEEEECCC-----CccCcCCEEEEecC
Confidence 45566778999999999987 44555566666644
No 43
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=23.22 E-value=1.4e+02 Score=25.80 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=22.8
Q ss_pred cCcccccEEEEEEEEEECCcccCCCceeEEEEEEEE
Q psy26 995 LDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDV 1030 (1186)
Q Consensus 995 lD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V 1030 (1186)
..|...+.|.++++++|.. +.+.+.++.|.|
T Consensus 51 ~~y~~~G~y~v~l~v~d~~-----g~~~~~~~~V~V 81 (81)
T cd00146 51 HTYTKPGTYTVTLTVTNAV-----GSSSTKTTTVVV 81 (81)
T ss_pred EEcCCCcEEEEEEEEEeCC-----CCEEEEEEEEEC
Confidence 4467889999999999986 455555666553
No 44
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=23.00 E-value=1.5e+02 Score=25.63 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=22.1
Q ss_pred CCcccccEEEEEEEEEECCCCCceEEEEEEEEE
Q psy26 1103 LDYEEINSYVLNVTASDGGTPRLSTIFMFTINV 1135 (1186)
Q Consensus 1103 ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V 1135 (1186)
..|...+.|.++++|+|..+ .+.+.++.|.|
T Consensus 51 ~~y~~~G~y~v~l~v~d~~g--~~~~~~~~V~V 81 (81)
T cd00146 51 HTYTKPGTYTVTLTVTNAVG--SSSTKTTTVVV 81 (81)
T ss_pred EEcCCCcEEEEEEEEEeCCC--CEEEEEEEEEC
Confidence 45678899999999999864 34444555543
No 45
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=21.96 E-value=1.5e+02 Score=27.67 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=23.5
Q ss_pred cCCcccccEEEEEEEEEECCCCCceEEEEEEEEEEe
Q psy26 1102 KLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVED 1137 (1186)
Q Consensus 1102 ~ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~d 1137 (1186)
.+++...+.|.++|+++|..+-..| ..+.|.|.|
T Consensus 73 t~~v~kgG~y~m~V~lCn~dGCS~S--~~~~I~VAD 106 (106)
T cd02848 73 TFKVGKGGRYQMQVALCNGDGCSTS--AAKEIVVAD 106 (106)
T ss_pred EEEeCCCCeEEEEEEEECCCCccCc--CCEEEEecC
Confidence 3456677899999999998874444 445555543
No 46
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=21.83 E-value=2.8e+02 Score=22.84 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=23.2
Q ss_pred cccEEEEEEEEEECCcccCCCceeEEEEEEEEEeCC
Q psy26 999 TVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDEN 1034 (1186)
Q Consensus 999 ~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~dvN 1034 (1186)
..+.|.|.++|+|.. +..+.....+.+.|..
T Consensus 21 ~dg~yt~~v~a~D~A-----GN~~~~~~~~~i~d~~ 51 (60)
T PF12245_consen 21 ADGEYTLTVTATDKA-----GNTSSSTTQIVIVDNT 51 (60)
T ss_pred CCccEEEEEEEEECC-----CCEEEeeeEEEEEcCC
Confidence 367899999999998 5666666666666644
No 47
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=20.62 E-value=1.8e+02 Score=25.04 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=23.8
Q ss_pred cCCcccccEEEEEEEEEECCCCCceEEEEEEEEE
Q psy26 1102 KLDYEEINSYVLNVTASDGGTPRLSTIFMFTINV 1135 (1186)
Q Consensus 1102 ~ld~e~~~~~~l~V~a~D~g~p~~s~~~~v~I~V 1135 (1186)
..-|...+.|.++++++|..+ +.+.++.|.|
T Consensus 48 ~~~y~~~G~y~v~l~v~n~~g---~~~~~~~i~v 78 (79)
T smart00089 48 THTYTKPGTYTVTLTVTNAVG---SASATVTVVV 78 (79)
T ss_pred EEEeCCCcEEEEEEEEEcCCC---cEEEEEEEEE
Confidence 345677899999999999877 5666666665
No 48
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=20.35 E-value=2.9e+02 Score=22.71 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=20.1
Q ss_pred CceEEEEEEEEeCCCCCeeEEEEEEEEEeecC
Q psy26 224 INKYNLTIIATDKGNPPRTATAFLIIHVNDVN 255 (1186)
Q Consensus 224 ~~~y~l~v~a~D~g~p~~~~~~~v~I~V~dvN 255 (1186)
...|.|.++|+|..+ ..+.....+.+.|..
T Consensus 22 dg~yt~~v~a~D~AG--N~~~~~~~~~i~d~~ 51 (60)
T PF12245_consen 22 DGEYTLTVTATDKAG--NTSSSTTQIVIVDNT 51 (60)
T ss_pred CccEEEEEEEEECCC--CEEEeeeEEEEEcCC
Confidence 357999999999966 344455555555543
Done!