RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy26
(1186 letters)
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins
are glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family
cadherin, desmocollin, and desmoglein, a large variety of
domain architectures with varying repeat copy numbers.
Cadherin-repeat containing proteins exist as monomers,
homodimers, or heterodimers.
Length = 98
Score = 117 bits (295), Expect = 3e-31
Identities = 52/101 (51%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 936 PYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLL 995
Y+V + E A GT V VS D D G NG+V Y I+SGN+D FSID +TG+IT +K L
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60
Query: 996 DRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDN 1036
DRE S + L V A D LSST VTI VLD NDN
Sbjct: 61 DREEQSSYTLTVTATDGG---GPPLSSTATVTITVLDVNDN 98
Score = 108 bits (273), Expect = 3e-28
Identities = 47/95 (49%), Positives = 56/95 (58%)
Query: 1047 ISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYE 1106
+SV EN T + ATD D G N EV +SI SGN+ F +DP TG + K LD E
Sbjct: 4 VSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDRE 63
Query: 1107 EINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDN 1141
E +SY L VTA+DGG P LS+ TI V D NDN
Sbjct: 64 EQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 101 bits (254), Expect = 1e-25
Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 723 SYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSL 781
SYE S+ E+ P + A D D G NG V+YSI+ GN + F I P G + L
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60
Query: 782 DRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDN 819
DRE + Y LTV A D G P SS+ V I ++D NDN
Sbjct: 61 DREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 95.5 bits (238), Expect = 2e-23
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 621 EITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSS-NPDDQFKIVETNGVIYLNKPIQS 679
E+++PENA G + A D DSG N + YS+ S N D F I + G I KP+
Sbjct: 3 EVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDR 62
Query: 680 PPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDH 715
S+ T+ + A+D G LSS +V + + DVND+
Sbjct: 63 EEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 90.8 bits (226), Expect = 8e-22
Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 827 SFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALS--NAKGDFEIDSRNGFIKTMRSF 884
S+ SV EN PP + V + ATD D G N E+++++ N G F ID G I T +
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60
Query: 885 DRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDN 928
DRE Q+ +L T +D G P L V + + D NDN
Sbjct: 61 DREE------QSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 83.1 bits (206), Expect = 4e-19
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 21/98 (21%)
Query: 354 VLNISLLENSAANTLVATLTASDHDQ---------------------DSITGQLTVKTKL 392
+S+ EN+ T+V T++A+D D D TG++T L
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60
Query: 393 DRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDN 430
DRE + Y L V A D G PP SSTATV + + DVNDN
Sbjct: 61 DREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 80.8 bits (200), Expect = 2e-18
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 265 EYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT-- 322
Y + E AP G+ V ++ATD D+G N ++ Y+ VSGNE F I+P++G ITT
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60
Query: 323 --------------RDGGPNPKWAYTQLKVSILDEND 345
DGG P + + +++LD ND
Sbjct: 61 DREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVND 97
Score = 71.6 bits (176), Expect = 4e-15
Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEII 571
Y S+ E+ G V + + D ++ Y+IV G+ F I+ TGEI
Sbjct: 2 YEVSVPEN-----APPGTVVLTVSATDPD-SGENGEVTYSIVSGNEDGLFSIDPSTGEIT 55
Query: 572 TAAKLDREEQSIYNLVVSARSRLS---YGKTFVNITLLDLNDN 611
TA LDREEQS Y L V+A V IT+LD+NDN
Sbjct: 56 TAKPLDREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 70.4 bits (173), Expect = 1e-14
Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 31/96 (32%)
Query: 193 FATVDENAINGSVVAAVSVVDPDEGLN-------------------------------DR 221
+V ENA G+VV VS DPD G N DR
Sbjct: 3 EVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDR 62
Query: 222 EHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDH 257
E + Y LT+ ATD G PP ++TA + I V DVND+
Sbjct: 63 EEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 63.9 bits (156), Expect = 2e-12
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 91 YSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSE--TERKFT--------------N 134
Y VS+ E+ PGT VL V ATD D G+N ++TY + + F+ +
Sbjct: 2 YEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLD 61
Query: 135 CQQQRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDH 178
++Q S TV A D G P VT+ +LD ND+
Sbjct: 62 REEQ-------SSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 60.0 bits (146), Expect = 5e-11
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDN 80
+ T LDRE Y L ++A DGG P V +T+LDVNDN
Sbjct: 54 ITTAKPLDREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 51.2 bits (123), Expect = 6e-08
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 438 QYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE 478
Y +PE+ G ++ VSA D D G+N +VTYSI SG+E
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNE 41
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when bound
to calcium.
Length = 81
Score = 97.8 bits (244), Expect = 2e-24
Identities = 47/84 (55%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 955 STMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAAT 1014
S DAD G NG V Y I+SGNDD FSID TG+IT +K LDRE ++ L V A D
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGG 60
Query: 1015 VVSNQLSSTTMVTIDVLDENDNAP 1038
LSST VTI VLD NDNAP
Sbjct: 61 ---PPLSSTATVTITVLDVNDNAP 81
Score = 95.9 bits (239), Expect = 9e-24
Identities = 40/81 (49%), Positives = 47/81 (58%)
Query: 1063 QATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGT 1122
ATD+D G N +V +SI SGN F +DP TG + K LD EE Y L V A+DGG
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGG 60
Query: 1123 PRLSTIFMFTINVEDCNDNPP 1143
P LS+ TI V D NDN P
Sbjct: 61 PPLSSTATVTITVLDVNDNAP 81
Score = 86.6 bits (215), Expect = 1e-20
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 742 VAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRETRDYYALTVLAEDHGK 800
A D+D G NG V+YSI+ GN + F I P+ G + LDRE + Y LTV A D G
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGG 60
Query: 801 YPRSSSVPVVIHIIDENDNKP 821
P SS+ V I ++D NDN P
Sbjct: 61 PPLSSTATVTITVLDVNDNAP 81
Score = 74.7 bits (184), Expect = 2e-16
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 638 RARDRDSGVNSRIFYSLSS-NPDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGK 696
A D DSG N ++ YS+ S N D F I G I KP+ T+ + A+D G
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGG 60
Query: 697 QSLSSKHSVNVYIQDVNDHTP 717
LSS +V + + DVND+ P
Sbjct: 61 PPLSSTATVTITVLDVNDNAP 81
Score = 70.5 bits (173), Expect = 7e-15
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 547 QIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSAR---SRLSYGKTFVNI 603
++ Y+I+ G+ F I+ TGEI T LDREEQ Y L V A V I
Sbjct: 12 KVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTI 71
Query: 604 TLLDLNDNAP 613
T+LD+NDNAP
Sbjct: 72 TVLDVNDNAP 81
Score = 69.7 bits (171), Expect = 1e-14
Identities = 28/53 (52%), Positives = 33/53 (62%)
Query: 380 DSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNP 432
D TG++T LDRE +Y L V A D G PP SSTATV + + DVNDN P
Sbjct: 29 DPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81
Score = 69.7 bits (171), Expect = 2e-14
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 847 ATDKDVGRNAELSFALS--NAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATV 904
ATD D G N ++++++ N G F ID G I T + DRE Q +L
Sbjct: 2 ATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREE------QPEYTLTVEA 55
Query: 905 SDNGSPRLKDKVKVDVYITDQNDNSP 930
+D G P L V + + D NDN+P
Sbjct: 56 TDGGGPPLSSTATVTITVLDVNDNAP 81
Score = 65.1 bits (159), Expect = 5e-13
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 284 TATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT----------------RDGGP 327
+ATD D+G N ++ Y+ +SGN+ F I+P +G ITT DGG
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGG 60
Query: 328 NPKWAYTQLKVSILDENDEKP 348
P + + +++LD ND P
Sbjct: 61 PPLSSTATVTITVLDVNDNAP 81
Score = 63.9 bits (156), Expect = 1e-12
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPP 82
+ TT LDRE Y L + A DGG P V +T+LDVNDN P
Sbjct: 35 ITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81
Score = 57.4 bits (139), Expect = 3e-10
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEP 259
DRE +Y LT+ ATD G PP ++TA + I V DVND+ P
Sbjct: 42 DREEQPEYTLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81
Score = 46.6 bits (111), Expect = 2e-06
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 110 ATDNDQGDNAKITYYL------------SETERKFTNCQQQRPGGSCPKSCVFTVFARDH 157
ATD D G+N K+TY + ET T R TV A D
Sbjct: 2 ATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQP---EYTLTVEATDG 58
Query: 158 GSPRQDGRTYVTVNLLDANDHDP 180
G P VT+ +LD ND+ P
Sbjct: 59 GGPPLSSTATVTITVLDVNDNAP 81
Score = 30.4 bits (69), Expect = 0.86
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 457 SAYDLDCGKNAQVTYSIESGSEA 479
SA D D G+N +VTYSI SG++
Sbjct: 1 SATDADSGENGKVTYSILSGNDD 23
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain.
Length = 92
Score = 90.8 bits (226), Expect = 6e-22
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 937 YKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLD 996
Y + E A +GT+V V+ DAD G NG ++Y I+ G F ID TG ++ +K LD
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLD 60
Query: 997 RETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVL 1031
RE++ ++ L VLA D+ LSSTT VTI VL
Sbjct: 61 RESIGEYELTVLATDSG---GPPLSSTTTVTITVL 92
Score = 86.6 bits (215), Expect = 2e-20
Identities = 38/90 (42%), Positives = 47/90 (52%)
Query: 1047 ISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYE 1106
SV EN V T++ ATD+D+G N + +SI G F +DP TG L K LD E
Sbjct: 3 ASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDRE 62
Query: 1107 EINSYVLNVTASDGGTPRLSTIFMFTINVE 1136
I Y L V A+D G P LS+ TI V
Sbjct: 63 SIGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 79.3 bits (196), Expect = 8e-18
Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 724 YETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLD 782
Y S+ E+ PV + A D+DLG NG + YSI+ G F I PD G + LD
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLD 60
Query: 783 RETRDYYALTVLAEDHGKYPRSSSVPVVIHII 814
RE+ Y LTVLA D G P SS+ V I ++
Sbjct: 61 RESIGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 77.3 bits (191), Expect = 4e-17
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 621 EITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSS-NPDDQFKIVETNGVIYLNKPIQS 679
++PENA VG E+ A D D G N RIFYS+ P F+I G + KP+
Sbjct: 2 SASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDR 61
Query: 680 PPGSTLTIEIVASDSGKQSLSSKHSVNVYIQ 710
+ ++A+DSG LSS +V + +
Sbjct: 62 ESIGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 68.5 bits (168), Expect = 5e-14
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 16/92 (17%)
Query: 266 YSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTR-- 323
YSA + E AP G+ V +TATD D G N +IFY+ + G WF I+P +G ++T
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLD 60
Query: 324 --------------DGGPNPKWAYTQLKVSIL 341
D G P + T + +++L
Sbjct: 61 RESIGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 66.9 bits (164), Expect = 2e-13
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 21/86 (24%)
Query: 356 NISLLENSAANTLVATLTASDHDQ---------------------DSITGQLTVKTKLDR 394
+ S+ EN+ T V T+TA+D D D TG L+ LDR
Sbjct: 2 SASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDR 61
Query: 395 ETITDYELKVIAKDHGTPPQSSTATV 420
E+I +YEL V+A D G PP SST TV
Sbjct: 62 ESIGEYELTVLATDSGGPPLSSTTTV 87
Score = 65.4 bits (160), Expect = 5e-13
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 828 FVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALS--NAKGDFEIDSRNGFIKTMRSFD 885
+ SV EN P + V + ATD D+G N + +++ G F ID G + T + D
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLD 60
Query: 886 RENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYIT 923
RE+ L +D+G P L V + +
Sbjct: 61 RES------IGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 62.7 bits (153), Expect = 6e-12
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEII 571
Y+ S+ E+ +G +V + ++D +I Y+I+ G P F I+ TG++
Sbjct: 1 YSASVPEN-----APVGTEVLTVTATDAD-LGPNGRIFYSILGGGPGGWFRIDPDTGDLS 54
Query: 572 TAAKLDREEQSIYNLVVSARSRLSYGK---TFVNITLL 606
T LDRE Y L V A T V IT+L
Sbjct: 55 TTKPLDRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 58.5 bits (142), Expect = 1e-10
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 31/89 (34%)
Query: 194 ATVDENAINGSVVAAVSVVDPDEGLN-------------------------------DRE 222
A+V ENA G+ V V+ D D G N DRE
Sbjct: 3 ASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDRE 62
Query: 223 HINKYNLTIIATDKGNPPRTATAFLIIHV 251
I +Y LT++ATD G PP ++T + I V
Sbjct: 63 SIGEYELTVLATDSGGPPLSSTTTVTITV 91
Score = 55.4 bits (134), Expect = 2e-09
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 91 YSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSETE--RKFTNCQQQRPGGSCPK-- 146
YS S+ E+ GT+VL V ATD D G N +I Y + F G
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFR--IDPDTGDLSTTKP 58
Query: 147 -------SCVFTVFARDHGSPRQDGRTYVTVNLL 173
TV A D G P T VT+ +L
Sbjct: 59 LDRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 46.5 bits (111), Expect = 2e-06
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTIL 75
L TT LDRE++ Y+L + A D G P V +T+L
Sbjct: 53 LSTTKPLDRESIGEYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 42.7 bits (101), Expect = 5e-05
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 442 QIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSEAVDGGNRKATENAIVEIIKN--S 499
+PE+ VG ++ V+A D D G N ++ YSI G ++ S
Sbjct: 4 SVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPG---------GWFRIDPDTGDLS 54
Query: 500 MVETLEFEHYNGYTFSIL-EDHD 521
+ L+ E Y ++L D
Sbjct: 55 TTKPLDRESIGEYELTVLATDSG 77
>gnl|CDD|206635 cd00031, CA_like, Cadherin repeat-like domain. Cadherins are
glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family
cadherin, desmocollin, and desmoglein, a large variety of
domain architectures with varying repeat copy numbers.
Cadherin-repeat containing proteins exist as monomers,
homodimers, or heterodimers. This family also includes
the cadherin-like repeats of extracellular
alpha-dystroglycan.
Length = 98
Score = 39.2 bits (91), Expect = 0.001
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 1067 SDIGVNNEVLFSI-GSGNKRDT--FHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTP 1123
+D+ ++ + I +G + H +P +GIL +KLD E+ + ++V+A+ G
Sbjct: 21 TDLIASSGEIIKISAAGKEALPSWLHWEPHSGILEGLEKLDREDKGVHYISVSAASLGAN 80
Query: 1124 RLSTIFMFTINVEDCNDN 1141
T +F+I V D NDN
Sbjct: 81 VPQTSSVFSIEVYDENDN 98
Score = 28.8 bits (64), Expect = 5.7
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 952 FRVSTMDADEGLNGDVYYKIISGNDDEH---FSIDEATGQITISKLLDRETVSKFNLKVL 1008
FRVS + D + KI + + + +G + + LDRE + V
Sbjct: 15 FRVS-IPTDLIASSGEIIKISAAGKEALPSWLHWEPHSGILEGLEKLDREDKGVHYISVS 73
Query: 1009 ARDAATVVSNQLSSTTMVTIDVLDENDN 1036
AA++ +N ++++ +I+V DENDN
Sbjct: 74 ---AASLGANVPQTSSVFSIEVYDENDN 98
>gnl|CDD|203892 pfam08266, Cadherin_2, Cadherin-like. This cadherin domain is
usually the most N-terminal copy of the domain.
Length = 84
Score = 33.2 bits (77), Expect = 0.095
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 552 IVYGDPKKKFEINDRTGEIITAAKLDREE 580
IV G K+ F++N TG+++ ++DREE
Sbjct: 38 IVSGGNKQYFQLNPETGDLLVNERIDREE 66
Score = 29.8 bits (68), Expect = 1.7
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 829 VFSVMENLPPDSFVGKLIATDKDVGRN-AELSF----ALSNAKGD-FEIDSRNGFIKTMR 882
+SV E P SFVG L KD+G N EL+ +S F+++ G +
Sbjct: 4 RYSVPEETEPGSFVGNLA---KDLGLNVQELAARGARIVSGGNKQYFQLNPETGDLLVNE 60
Query: 883 SFDRENLLQTTGQNFISLEATVSD 906
DRE L ++ + E + +
Sbjct: 61 RIDREELCGSSEPCVLHFEVLLEN 84
>gnl|CDD|227864 COG5577, COG5577, Spore coat protein [Cell envelope biogenesis,
outer membrane].
Length = 145
Score = 34.3 bits (79), Expect = 0.12
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 397 ITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQV 456
I + K P T+ + ++ FY + + T + QV
Sbjct: 7 IKQRNMLEECKKTQQVPSQKTS-----VYNMQAKLQEFYGFCMNQILESITGLDDLDDQV 61
Query: 457 SAYDLDCGKNAQVT 470
A D+ + VT
Sbjct: 62 IAGDMLIFAKSGVT 75
>gnl|CDD|214795 smart00736, CADG, Dystroglycan-type cadherin-like domains.
Cadherin-homologous domains present in metazoan
dystroglycans and alpha/epsilon sarcoglycans, yeast
Axl2p and in a very large protein from magnetotactic
bacteria. Likely to bind calcium ions.
Length = 97
Score = 31.2 bits (71), Expect = 0.67
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 217 GLNDREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVND 256
G + +L + ATD +A+ I V + ND
Sbjct: 59 GTPTNSDVGSLSLKVTATDSSGA--SASDTFTITVVNTND 96
>gnl|CDD|214999 smart01055, Cadherin_pro, Cadherin prodomain like. Cadherins are a
family of proteins that mediate calcium dependent
cell-cell adhesion. They are activated through cleavage
of a prosequence in the late Golgi. This domain
corresponds to the folded region of the prosequence, and
is termed the prodomain. The prodomain shows structural
resemblance to the cadherin domain, but lacks all the
features known to be important for cadherin-cadherin
interactions.
Length = 87
Score = 30.7 bits (70), Expect = 0.78
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 820 KPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSRNGFIK 879
KP FS + F V +L +G++ ++ +A L F S+ DF + +G +
Sbjct: 2 KPGFSEEKYTFHVPSHLEAGQPLGRV--NFEECLGSARLQFESSD--PDFRVL-EDGTVY 56
Query: 880 TMRSF 884
R
Sbjct: 57 ATRPV 61
>gnl|CDD|220444 pfam09856, DUF2083, Predicted transcriptional regulator (DUF2083).
This domain is found in various prokaryotic
transcriptional regulatory proteins belonging to the XRE
family. Its exact function is, as yet, unknown.
Length = 156
Score = 31.0 bits (71), Expect = 1.9
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 13/44 (29%)
Query: 136 QQQRPGGSCPKSCVFTVFARDHGSPRQ---------DGRTYVTV 170
R GG+CP V FA+ P + DGR Y T+
Sbjct: 33 PFARFGGACPLWNVHEAFAQ----PGRILVQLAEMPDGRRYFTI 72
>gnl|CDD|206636 cd11303, Dystroglycan_repeat, Cadherin-like repeat domain of alpha
dystroglycan. Dystroglycan is a glycoprotein widely
distributed in skeletal muscle and other tissues; the
pre-protein is cleaved into two subunits (alpha and
beta) that form a complex which links the extracellular
matrix to the cytoskeleton. Cadherin-like dystroglycan
repeats are present in the extracellular
alpha-dystroglycan subunit, which binds to the
alpha-2-laminin G-domain in the basement membrane as
part of the dystrophin-dystroglycan-complex (DGC). DGC
has been shown to interact with other etxtracellular
matrix components as well, such as perlecan and m-agrin,
suggesting that the complex may play various different
roles depending on the extracellular ligand.
Length = 99
Score = 29.3 bits (66), Expect = 3.4
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 216 EGLNDREHINKYNLTIIATDKGNPPRTATAFLIIHVND 253
GL + + + +++ A DKG+ A+ I V+
Sbjct: 57 YGLPLSDDVGVHYISVTAEDKGSAGSQASDVFSIDVHP 94
>gnl|CDD|216763 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA
family. Tpt1 catalyzes the last step of tRNA splicing
in yeast. It transfers the splice junction 2'-phosphate
from ligated tRNA to NAD, to produce ADP-ribose
1"-2"-cyclic phosphate. This is presumed to be followed
by a transesterification step to release the RNA. The
first step of this reaction is similar to that catalyzed
by some bacterial toxins. E. coli KptA and mouse Tpt1
are likely to use the same reaction mechanism.
Length = 169
Score = 30.2 bits (69), Expect = 4.1
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 543 ATIDQIKYAIVYGDPKKKFEINDRTGEI-------ITAAKLDREEQSI 583
T + ++ +V + KK+FE+++ I I L+ EE+
Sbjct: 45 VTREDLE-RVVATNDKKRFELSEDGDRIRANQGHSIKTVDLELEEEGP 91
>gnl|CDD|241286 cd01255, PH2_Tiam1_2, T-lymphoma invasion and metastasis 1 and 2
Pleckstrin Homology (PH) domain, C-terminal domain.
Tiam1 activates Rac GTPases to induce membrane ruffling
and cell motility while Tiam2 (also called STEF (SIF
(still life) and Tiam1 like-exchange factor) contributes
to neurite growth. Tiam1/2 are Dbl-family of GEFs that
possess a Dbl(DH) domain with a PH domain in tandem.
DH-PH domain catalyzes the GDP/GTP exchange reaction in
the GTPase cycle and facillitating the switch between
inactive GDP-bound and active GTP-bound states. The DH
domain of Tiam1 interacts with Switch regions 1 and 2 of
Rac1 which blocks magnesium binding and GDP is released.
Tiam1/2 possess two PH domains, which are often referred
to as PHn and PHc domains. The DH-PH tandem domain is
made up of the PHc domain while the PHn is part of a
novel N-terminal PHCCEx domain which is made up of the
PHn domain, a coiled coil region(CC), and an extra
region (Ex). PHCCEx mediates binding to plasma membranes
and signalling proteins in the activation of Rac
GTPases. The PH domain resembles the beta-spectrin PH
domain, suggesting non-canonical phosphatidylinositol
binding. CC and Ex form a positively charged surface for
protein binding. There are 2 motifs in
Tiam1/2-interacting proteins that bind to the PHCCEx
domain: Motif-I in CD44, ephrinBs, and the NMDA receptor
and Motif-II in Par3 and JIP2. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 172
Score = 30.0 bits (68), Expect = 4.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 840 SFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENL 889
+ +LI T ++ E F L + +F +N F+K +RS RE +
Sbjct: 119 RCLWELIHTKSELEGRPEKVFQLCCSTPEF----KNAFLKVIRSILREKV 164
>gnl|CDD|147012 pfam04647, AgrB, Accessory gene regulator B. The arg locus consists
of two transcripts: RNAII and RNAIII. RNAII encodes four
genes (agrA, B, C, and D) whose gene products assemble a
quorum sensing system. AgrB and AgrD are essential for
the production of the autoinducing peptide which
functions as a signal for quorum sensing. AgrB is a
transmembrane protein.
Length = 185
Score = 29.9 bits (68), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1159 PINTINVPITFKKLKKKKKKKML 1181
P +T PIT ++L+KK K K +
Sbjct: 120 PADTPKKPITNEELRKKLKIKSI 142
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 28.0 bits (63), Expect = 8.1
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 930 PQFLRTPYKVQISEGAS-------IGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSI 982
P+F + P V++ EG S G VS + L +K+ +I
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 983 DEAT 986
Sbjct: 61 SNVQ 64
>gnl|CDD|183178 PRK11525, dinD, DNA-damage-inducible protein D; Provisional.
Length = 279
Score = 29.6 bits (67), Expect = 8.7
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 24/101 (23%)
Query: 486 KATENAIVEIIKNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATI 545
K + E + + V T F+I ++H G D I R
Sbjct: 141 KEHNKQLSEAAQEAGVATAI-------DFAIFQNHGYQGLYGGLDTKAIHQR-------- 185
Query: 546 DQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNL 586
G K + +I D G AA L R Q+ L
Sbjct: 186 --------KGLKKSQ-KILDHMGSTELAANLFRATQTEEKL 217
>gnl|CDD|215994 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This domain
represents the hybrid binding domain and the wall
domain. The hybrid binding domain binds the nascent RNA
strand / template DNA strand in the Pol II transcription
elongation complex. This domain contains the important
structural motifs, switch 3 and the flap loop and binds
an active site metal ion. This domain is also involved
in binding to Rpb1 and Rpb3. Many of the bacterial
members contain large insertions within this domain, as
region known as dispensable region 2 (DRII).
Length = 373
Score = 29.8 bits (68), Expect = 9.3
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 633 EIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPIQ---------SPPGS 683
+ Y AR G I + ++ ++ ++ +G++ + ++ +P G
Sbjct: 108 KEYEIEARKTKLGPIEEITRDPPNVSEEAYRKLDEDGIVRVGAEVKPGDILVGKITPKGE 167
Query: 684 TLTIEI---VASDSGKQSLSSKHSVNVYIQDVNDHTP 717
L I A D SL KH + DV
Sbjct: 168 KLLRAIFGEKARDVKDTSLKVKHGEEGRVDDVKIDLN 204
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.370
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 58,904,892
Number of extensions: 5850509
Number of successful extensions: 3364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3339
Number of HSP's successfully gapped: 67
Length of query: 1186
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1078
Effective length of database: 6,147,370
Effective search space: 6626864860
Effective search space used: 6626864860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (28.8 bits)