RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy26
(1186 letters)
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 400 bits (1028), Expect = e-123
Identities = 135/606 (22%), Positives = 231/606 (38%), Gaps = 60/606 (9%)
Query: 599 TFVNITLLDLNDNAPIFNRDKDEITIPE-NAAVGQEIYVARARDRDSGVNSRIFYSLSSN 657
V D++ P F+ + ++ G+++ D + +
Sbjct: 21 QVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVG---- 76
Query: 658 PDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQS--------------LSSKH 703
D +F+++ +G + + + ++ + TI + K S +
Sbjct: 77 -DSRFRVLP-DGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSR 134
Query: 704 SVNVYIQDVNDHTPVF-----DMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSI 758
S + + + D + E+ LV S+ V YSI
Sbjct: 135 SSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKR-LVQIKSNKDRFNKVYYSI 193
Query: 759 I-EGNGEDKFGIF----PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHI 813
+G G+F G+M V LDRE D Y L+ A P + + I++
Sbjct: 194 TGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINV 253
Query: 814 IDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFAL------SN 864
ID+NDN+P+F+ F SV E + P + V + ATD+D N LS+++
Sbjct: 254 IDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEP 313
Query: 865 AKGDFEIDSRNGFIKTMRSF-DRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYIT 923
F I+ G I + + DRE +L +D L + K + IT
Sbjct: 314 IPNLFTINRETGVISLIGTGLDREK------FPEYTLTVQATDLEGAGLSVEGKAIIQIT 367
Query: 924 DQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADE-GLNGDVYYKIISGNDDEHFSI 982
D NDN+P F Y + E IG +V R+S D D G I N+ F+I
Sbjct: 368 DANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 426
Query: 983 ----DEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAP 1038
+ G +T +K LD E ++ L++ +A +ST VT+ V D N+ P
Sbjct: 427 TTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-P 485
Query: 1039 MFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILY 1098
FV S++ V E+ + ++ A D D ++ + IG+ R ++ GI+
Sbjct: 486 FFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNGIVT 544
Query: 1099 LHKKLDYE----EINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQI 1154
+ LD E + N+Y + + +D G + ++V D NDN P
Sbjct: 545 GNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCD 604
Query: 1155 RENIPI 1160
+ P
Sbjct: 605 QNPEPQ 610
Score = 387 bits (995), Expect = e-118
Identities = 131/728 (17%), Positives = 237/728 (32%), Gaps = 103/728 (14%)
Query: 405 IAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDT-QVGVSIVQVSAYDLDC 463
A V DV+ P F ++Y + + G + +V+ D
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCT- 66
Query: 464 GKNAQVTYSIESG-------------------------------------------SEAV 480
Y + S+
Sbjct: 67 -TRKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRH 125
Query: 481 DGGNRKATENAIVEII---KNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIR 537
G + ++ + ++ + + + + E+ + + +IK
Sbjct: 126 RSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER---GPFPKRLVQIK-- 180
Query: 538 NSDMQATIDQIKYAIVYG----DPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSR 593
S+ ++ Y+I P+ F I TG ++ LDREE Y L A S
Sbjct: 181 -SNKDRFN-KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSE 238
Query: 594 LSYGK---TFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDS---GVN 647
+ I ++D NDN P F +D ++ E G ++ A D D +N
Sbjct: 239 NGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLN 298
Query: 648 SRIFYSLSSN-----PDDQFKIVETNGVIYLNKPI----QSPPGSTLTIEIVASDSGKQS 698
+ YS+ + F I GVI L + P T+ + A+D
Sbjct: 299 GVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFP---EYTLTVQATDLEGAG 355
Query: 699 LSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDL-GNNGFVSYS 757
LS + + I D ND+ P+FD +Y + E+ + L D D+ G + +
Sbjct: 356 LSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVY 414
Query: 758 IIEGNGEDKFGIFPD-----GFMYVRNSLDRETRDYYALTVLAED---HGKYPRSSSVPV 809
I N F I D G + LD E R Y L + E+ +S+ V
Sbjct: 415 KIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATV 474
Query: 810 VIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFAL-SNAKGD 868
+ + D N+ P F + V E+L + L+A D D + +LS+ + ++
Sbjct: 475 TVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARW 533
Query: 869 FEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDN 928
++ NG + + DRE+ + + T D+G + +++ D NDN
Sbjct: 534 LTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVT--DDGVSVGTGTGTLILHVLDVNDN 591
Query: 929 SPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVY-YKIISGNDDEHFSIDEATG 987
P + + + ++ DAD N Y + G+D + ++ G
Sbjct: 592 GPVPSPRVFTMCDQN-----PEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKG 646
Query: 988 QITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKI 1047
+ + +++ VL D + T+V V A +
Sbjct: 647 TSMLLSPTQQLKKGDYSIYVLLSD-----AQNNPQLTVVNATVCSCEGKAIKCQEKLVGG 701
Query: 1048 SVYENTTV 1055
V
Sbjct: 702 FDLPIILV 709
Score = 383 bits (984), Expect = e-116
Identities = 131/690 (18%), Positives = 232/690 (33%), Gaps = 83/690 (12%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEII 571
Y FS+ + GR +GK+ + + GD + F + G ++
Sbjct: 42 YIFSVNRRELER----GRKLGKVNFSDCTTRKHGL-----YDVGDSR--FRV-LPDGTVL 89
Query: 572 TAAKLDREEQSIYNLVVSARSRLSYGKTFV-----------------NITLLDLNDNAPI 614
+ + + + + + + + +L +
Sbjct: 90 VKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTG 149
Query: 615 FNRDKDE-----ITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSS-----NPDDQFKI 664
R K + I + EN + + ++++YS++ P F+I
Sbjct: 150 LKRKKRDWVIPPIKVSENERGPFPKRLV-QIKSNKDRFNKVYYSITGQGADNPPQGVFRI 208
Query: 665 VETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSY 724
G + + +P+ + A + + + + D ND+ P F +
Sbjct: 209 EWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVF 268
Query: 725 ETSLLESTPVNNRFFELVAKDSD---LGNNGFVSYSIIEGNGEDK----FGIFPD-GFMY 776
S+ E + + A D D NG +SYSI++ + E+ F I + G +
Sbjct: 269 RGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVIS 328
Query: 777 VRNS-LDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMEN 835
+ + LDRE Y LTV A D S +I I D NDN P F ++ V EN
Sbjct: 329 LIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN 388
Query: 836 LPPDSFVGKLIATDKDVGRNA---ELSFALSNAKGDFEI----DSRNGFIKTMRSFDREN 888
V +L TD D+ + N G F I +S G + T + D E
Sbjct: 389 -EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFEL 447
Query: 889 LLQTTGQNFISLEATVSD---NGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGA 945
+ L+ TV + P V V + D N+ P F+ +V +SE
Sbjct: 448 ------RKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDL 500
Query: 946 SIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV----S 1001
S G ++ + D D+ + Y I + ++++ G +T + LDRE+ +
Sbjct: 501 SRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNGIVTGNGNLDRESEYVKNN 559
Query: 1002 KFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFH 1061
+ + +L D + T + + VLD NDN P+ +
Sbjct: 560 TYTVIMLVTDDGVS---VGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV----- 611
Query: 1062 FQATDSDIGVNNEVL-FSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDG 1120
+D+DI N S+ G+ G L + Y + V SD
Sbjct: 612 LTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA 671
Query: 1121 GTPRLSTIFMFTINVEDCNDNPPSFPNTAI 1150
T+ V C +
Sbjct: 672 QNNPQLTV--VNATVCSCEGKAIKCQEKLV 699
Score = 335 bits (860), Expect = 3e-99
Identities = 112/515 (21%), Positives = 189/515 (36%), Gaps = 60/515 (11%)
Query: 691 ASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLE-STPVNNRFFELVAKDSDLG 749
AS L V DV+ P F + Y S+ + ++ D
Sbjct: 9 ASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTR 68
Query: 750 NNGFVSYSIIEGNGEDKFGIFPDGFMYVRNSLDRETR--------------DYYALTVLA 795
+G + +F + PDG + V+ + + V +
Sbjct: 69 KHGLYDVG------DSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVAS 122
Query: 796 EDHGKYPRSSSVPVVIHIIDENDNKPEFSNS-----SFVFSVMENLPPDSFVGKLIATDK 850
+ H + S + ++ + V EN F +L+
Sbjct: 123 KRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENE-RGPFPKRLVQIKS 181
Query: 851 DVGRNAELSFALS------NAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATV 904
+ R ++ ++++ +G F I+ G++ R DRE + L +
Sbjct: 182 NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREE------YDKYVLSSHA 235
Query: 905 SDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADE--- 961
+++ +++ + + DQNDN P+F + ++ + EG GTQV VS D D+
Sbjct: 236 VSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNID 295
Query: 962 GLNGDVYYKIISGN----DDEHFSIDEATGQI-TISKLLDRETVSKFNLKVLARDAATVV 1016
LNG + Y I+ + F+I+ TG I I LDRE ++ L V A D
Sbjct: 296 SLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLE--- 352
Query: 1017 SNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDI-GVNNEV 1075
LS I + D NDNAP+F V EN + ++ TD D+ G
Sbjct: 353 GAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQ 411
Query: 1076 LFSIGSGNKRDTFHM--DPVT--GILYLHKKLDYEEINSYVLNVTASDG---GTPRLSTI 1128
N+ F++ DP + GIL K LD+E YVL +T + P ++
Sbjct: 412 AVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTST 471
Query: 1129 FMFTINVEDCNDNPPSFPNTAIVRQIRENIPINTI 1163
T+ VED N+ P F + E++
Sbjct: 472 ATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEK 505
Score = 332 bits (852), Expect = 4e-98
Identities = 116/722 (16%), Positives = 224/722 (31%), Gaps = 143/722 (19%)
Query: 232 IATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELA-PAGSYVAGITATDEDT 290
A+ + DV+ +P F +EY ++ G + + +D T
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT 67
Query: 291 GVNAQIFYAFVSGNEHQWFEINPTSGLITTKT---------------------------- 322
+ F + P ++ +
Sbjct: 68 RKHGLYDVG------DSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVA 121
Query: 323 ---RDGGPNPKWAYTQLKVSILDEND-----EKPQFTQNVLNISLLENSAANTLVATLTA 374
G ++L V E +K + + +S E + +
Sbjct: 122 SKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIK- 180
Query: 375 SDHDQ-----------------------DSITGQLTVKTKLDRETITDYELKVIAKDHGT 411
S+ D+ + TG + V LDRE Y L A
Sbjct: 181 SNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENG 240
Query: 412 PPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLD---CGKNAQ 468
P + + + D NDN P F + + E Q G ++ VSA D D N
Sbjct: 241 SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGV 300
Query: 469 VTYSIESGS-------------------------------------EAVD--GGNRKATE 489
++YSI +A D G
Sbjct: 301 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEG 360
Query: 490 NAIVEII-KNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQI 548
AI++I N + + YT + E+ +G +V ++ + + DM T
Sbjct: 361 KAIIQITDANDNAPIFDPKT---YTALVPEN------EIGFEVQRLSVTDLDMPGTPAWQ 411
Query: 549 KYAIVYGDPKKKFEIN----DRTGEIITAAKLDREEQSIYNLVVSARSRLSYGK------ 598
+ + F I G + TA LD E + Y L ++ + +
Sbjct: 412 AVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTST 471
Query: 599 TFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNP 658
V +T+ D+N+ P F + + E+ + G++I A+D D ++ Y + ++P
Sbjct: 472 ATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDP 530
Query: 659 DDQFKIVETNGVIYLNKPI----QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVND 714
+ + NG++ N + + +T T+ ++ +D G + ++ +++ DVND
Sbjct: 531 ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVND 590
Query: 715 HTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGF-VSYSIIEGNGEDKFGIFP-D 772
+ PV + P L D+D+ N + S+ G+
Sbjct: 591 NGPVPSPRVFTMCDQNPEPQV-----LTISDADIPPNTYPYKVSLSHGSDLTWKAELDSK 645
Query: 773 GFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSV 832
G + + + + Y++ VL D P+ + V + +
Sbjct: 646 GTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCSCEGKAIKCQEKLVGGFD 703
Query: 833 ME 834
+
Sbjct: 704 LP 705
Score = 314 bits (806), Expect = 7e-92
Identities = 128/738 (17%), Positives = 220/738 (29%), Gaps = 151/738 (20%)
Query: 323 RDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSA-ANTLVATLTASDHDQDS 381
+ D + KP F+ S+ + + SD
Sbjct: 10 SVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRK 69
Query: 382 I--------------TGQLTVKTKLDRETITDYELK--------------VIAKDHGTPP 413
G + VK + T + + V +K H +
Sbjct: 70 HGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGE 129
Query: 414 QSSTATVFLFIEDVNDNNPVF-------YPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKN 466
++ + + L + + + E +VQ+ + + +
Sbjct: 130 EAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKS---NKDRF 186
Query: 467 AQVTYSIESGSE------------------------------------AVDGGNRKATEN 490
+V YSI AV E
Sbjct: 187 NKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEP 246
Query: 491 AIVEIIKNSMVETL-----EFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATI 545
+ I V +F + + S+ E G V + AT
Sbjct: 247 MEITIN----VIDQNDNRPKFTQ-DVFRGSVREG-----VQPGTQVMA-------VSAT- 288
Query: 546 D----------QIKYAIVYGDPKKK----FEINDRTGEIITAAK-LDREEQSIYNLVVSA 590
D + Y+I+ DP++ F IN TG I LDRE+ Y L V A
Sbjct: 289 DEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQA 348
Query: 591 R----SRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGV 646
+ LS + I + D NDNAPIF+ +PEN +G E+ D D
Sbjct: 349 TDLEGAGLS-VEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPG 406
Query: 647 --NSRIFYSLSSNPDDQFKIV---ETN-GVIYLNKPIQSPPGSTLTIEIVASDS---GKQ 697
+ Y + N F I E+N G++ K + ++I ++
Sbjct: 407 TPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVP 466
Query: 698 SLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYS 757
+S +V V ++DVN+ P F + + E + LVA+D D +SY
Sbjct: 467 LPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYF 525
Query: 758 IIEGNGEDKFGIFPD-GFMYVRNSLDRETR----DYYALTVLAEDHGKYPRSSSVPVVIH 812
I + + D G + +LDRE+ + Y + +L D G + + +++H
Sbjct: 526 IGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILH 584
Query: 813 IIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAE-LSFALSNA--KGDF 869
++D NDN P S F P L +D D+ N +LS+
Sbjct: 585 VLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSDLTWK 639
Query: 870 EIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNS 929
G + + + S+ +SD + V V +
Sbjct: 640 AELDSKGTSMLLSPTQQLK------KGDYSIYVLLSDAQNNPQLTVVNATVC--SCEGKA 691
Query: 930 PQFLRTPYKVQISEGASI 947
+ +
Sbjct: 692 IKCQEKLVGGFDLPIILV 709
Score = 314 bits (806), Expect = 8e-92
Identities = 115/716 (16%), Positives = 202/716 (28%), Gaps = 178/716 (24%)
Query: 55 SARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSLNE-SVLPGTKVLQVIATDN 113
+A V DV+ P F+ + Y S+N + G K+ +V +D
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAE--YIFSVNRRELERGRKLGKVNFSDC 65
Query: 114 DQGDNAKITY------------------YLSETERKFTNCQQQRPGGSCPKSCVFTVFAR 155
+ + KFT G +
Sbjct: 66 TTRKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRH 125
Query: 156 DHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVDPD 215
G + + V K R + + +E G + + +
Sbjct: 126 RSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER---GPFPKRLVQIKSN 182
Query: 216 EGLN-----------------------------------DREHINKYNLTIIATDKGNPP 240
+ DRE +KY L+ A + P
Sbjct: 183 KDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP 242
Query: 241 RTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDED---TGVNAQIF 297
+ I+V D ND+ P F + + + E G+ V ++ATDED +N +
Sbjct: 243 VEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLS 302
Query: 298 YAFVSGNEHQW----FEINPTSGLITTKT-----------------RDGGPNPKWAYTQL 336
Y+ + + + F IN +G+I+ D +
Sbjct: 303 YSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKA 362
Query: 337 KVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQ----------------- 379
+ I D ND P F + EN V L+ +D D
Sbjct: 363 IIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEG 421
Query: 380 ---------DSITGQLTVKTKLDRETITDYELKVIAKD---HGTPPQSSTATVFLFIEDV 427
+S G LT LD E Y L++ ++ P +STATV + +EDV
Sbjct: 422 GFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 481
Query: 428 NDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE--------- 478
N+ P F P+ + ED G I+ + A D D + +++Y I +
Sbjct: 482 NE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDN 540
Query: 479 --------------------------AVDGGNRKATENAIVEIIKNSMVETL-----EFE 507
D G T + + V +
Sbjct: 541 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILH----VLDVNDNGPVPS 596
Query: 508 HYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRT 567
+T + + I ++D+ K ++ +G D
Sbjct: 597 PRV-FTMCDQNP----------EPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSK 645
Query: 568 GEIITAAKLDREEQSIYNLVVSAR-----SRLSYGKTFVNITLLDLNDNAPIFNRD 618
G + + + ++ Y++ V +L+ VN T+ A
Sbjct: 646 GTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTV----VNATVCSCEGKAIKCQEK 697
Score = 284 bits (728), Expect = 3e-81
Identities = 104/527 (19%), Positives = 160/527 (30%), Gaps = 135/527 (25%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
+ T LDRE D Y L+ A +++ + ++D NDN P F V + S+
Sbjct: 215 MLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDV--FRGSV 272
Query: 96 NESVLPGTKVLQVIATDNDQ---GDNAKITYYLSETERKFTNCQQQRPGGSC-------P 145
E V PGT+V+ V ATD D N ++Y + +Q P
Sbjct: 273 REGVQPGTQVMAVSATDEDDNIDSLNGVLSYSIL----------KQDPEEPIPNLFTINR 322
Query: 146 KSCV-----------------FTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFP 188
++ V TV A D + + DAND+ P+ F
Sbjct: 323 ETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPI-----FD 377
Query: 189 STAGFATVDENAINGSVVAAVSVVDPDEGLN----------------------------- 219
A V EN I G V +SV D D
Sbjct: 378 PKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGI 436
Query: 220 -------DREHINKYNLTIIATDK---GNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAV 269
D E +Y L I + P T+TA + + V DVN+ P F +
Sbjct: 437 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVD 495
Query: 270 LSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT------- 322
+SE G + + A D D ++ Y F+ + +W +N +G++T
Sbjct: 496 VSEDLSRGEKIISLVAQDPDKQQIQKLSY-FIGNDPARWLTVNKDNGIVTGNGNLDRESE 554
Query: 323 -------------RDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLV 369
D G + L + +LD ND P + V +
Sbjct: 555 YVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPE-----P 609
Query: 370 ATLTASDHD----------------------QDSITGQLTVKTKLDRETITDYELKVIAK 407
LT SD D + G + + + DY + V+
Sbjct: 610 QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 669
Query: 408 DHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIV 454
D PQ + + V + V
Sbjct: 670 DAQNNPQLTVVNA--TVCSCEGKAIKCQEKLVGGFDLPIILVILGSV 714
Score = 268 bits (686), Expect = 1e-75
Identities = 100/573 (17%), Positives = 180/573 (31%), Gaps = 134/573 (23%)
Query: 18 NSKAKVTANPSGETSYLYLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDV 77
+ V + + +T R + ++++ + + +L
Sbjct: 85 DGTVLVKRHVKLHKDTKFTIST-WDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTF 143
Query: 78 NDNPPIFAHS-----VSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS------ 126
+ + VS NE G +++ +++ K+ Y ++
Sbjct: 144 PETHTGLKRKKRDWVIPPIKVSENE---RGPFPKRLVQIKSNKDRFNKVYYSITGQGADN 200
Query: 127 ETERKFT--------NCQQ-----QRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLL 173
+ F + + V + A + +T+N++
Sbjct: 201 PPQGVFRIEWETGWMLVTRPLDREEYD------KYVLSSHAVSENGSPVEEPMEITINVI 254
Query: 174 DANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLN-------------- 219
D ND+ P F +V E G+ V AVS D D+ ++
Sbjct: 255 DQNDNRPK-----FTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQD 309
Query: 220 -------------------------DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDV 254
DRE +Y LT+ ATD + II + D
Sbjct: 310 PEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDA 369
Query: 255 NDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDT-GVNAQIFYAFVSGNEHQWFEINP 313
ND+ P+F+ Y+A++ E G V ++ TD D G A + NE +F I
Sbjct: 370 NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 428
Query: 314 ----TSGLITTK-------------------TRDGGPNPKWAYTQLKVSILDENDEKPQF 350
G++TT + + V++ D N+ P F
Sbjct: 429 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFF 487
Query: 351 TQNVLNISLLENSAANTLVATLTASDHDQ--------------------DSITGQLTVKT 390
V + + E+ + + +L A D D+ + G +T
Sbjct: 488 VPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNG 547
Query: 391 KLDRETIT----DYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPED 446
LDRE+ Y + ++ D G + T T+ L + DVNDN PV P +
Sbjct: 548 NLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNP 607
Query: 447 TQVGVSIVQVSAYDLDCGKNA-QVTYSIESGSE 478
++ D D N S+ GS+
Sbjct: 608 -----EPQVLTISDADIPPNTYPYKVSLSHGSD 635
Score = 187 bits (475), Expect = 1e-48
Identities = 89/538 (16%), Positives = 152/538 (28%), Gaps = 132/538 (24%)
Query: 42 LDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSLNESVLP 101
LDRE Y L + A D + + I D NDN PIF Y+ + E+
Sbjct: 334 LDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIF--DPKTYTALVPENE-I 390
Query: 102 GTKVLQVIATDNDQGDNAKITYYLS------------------------------ETERK 131
G +V ++ TD D E ++
Sbjct: 391 GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQ 450
Query: 132 FTNCQQQRPGGSCPKSCVFTVFARD---HGSPRQDGRTYVTVNLLDANDHDPVIKFRYFP 188
+ + + P VTV + D N+ P F
Sbjct: 451 YV----------------LQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PF-----FV 488
Query: 189 STAGFATVDENAINGSVVAAVSVVDPDEGLN----------------------------- 219
V E+ G + ++ DPD+
Sbjct: 489 PAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGN 548
Query: 220 -DRE----HINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELA 274
DRE N Y + ++ TD G T T LI+HV DVND+ PV ++
Sbjct: 549 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN-- 606
Query: 275 PAGSYVAGITATDEDTGVNAQIF-YAFVSGNEHQWFEINPTSGLITTKTR---------- 323
+T +D D N + + G++ W + G +
Sbjct: 607 ---PEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYS 663
Query: 324 ------DGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLE--NSAANTLVATLTAS 375
D NP T + ++ + + + ++ L +++A L
Sbjct: 664 IYVLLSDAQNNP--QLTVVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGSVLALLILF 721
Query: 376 DHDQDSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLF--------IEDV 427
+ + VK L + + G + +
Sbjct: 722 LLLLLFLKRKKVVKEPLLLPEDDTRDNIFYYGEEGGGEEDQDYDLSQLHRGLDSRPDIMR 781
Query: 428 NDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNA-----QVTYSIE-SGSEA 479
ND P P+ +++ P + + + + D A + + E SGSEA
Sbjct: 782 NDVVPTLMPAPHYRPRPSNPDEIGNFIDENLDAADNDPTAPPYDSLLVFDYEGSGSEA 839
Score = 171 bits (435), Expect = 9e-44
Identities = 52/281 (18%), Positives = 90/281 (32%), Gaps = 29/281 (10%)
Query: 903 TVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGAS-IGTQVFRVSTMDADE 961
S L V D + P F Y ++ G ++ +V+ D
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT 67
Query: 962 GLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARD---------- 1011
+ Y + D F + G + + + + +KF +
Sbjct: 68 RKH--GLYDV----GDSRFRVLP-DGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAV 120
Query: 1012 -AATVVSNQLSSTTMVTIDVLDENDNAPMFVKTE-----SKISVYENTTVNTQLFHFQAT 1065
+ S + + + + VL + + + I V EN
Sbjct: 121 ASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER-GPFPKRLVQI 179
Query: 1066 DSDIGVNNEVLFSIGSGN----KRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGG 1121
S+ N+V +SI + F ++ TG + + + LD EE + YVL+ A
Sbjct: 180 KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSEN 239
Query: 1122 TPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
+ TINV D NDN P F +RE + T
Sbjct: 240 GSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 280
Score = 145 bits (366), Expect = 2e-35
Identities = 49/296 (16%), Positives = 89/296 (30%), Gaps = 62/296 (20%)
Query: 26 NPSGETSYLYLQTTGKLDRETVDFYQLNISARDG---GTPTRYGYLQVNVTILDVNDNPP 82
E++ L T LD E Y L I+ + P V VT+ DVN+ P
Sbjct: 427 TTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-AP 485
Query: 83 IFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSE-TERKFT------NC 135
F +V V ++E + G K++ ++A D D+ K++Y++ R T
Sbjct: 486 FFVPAV--SRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIV 543
Query: 136 QQQRP-----GGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPST 190
+ + D G G + +++LD ND+ PV R F
Sbjct: 544 TGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMC 603
Query: 191 AGFATVDENAINGSVVAAVSVVDPDEGLN------------------------------- 219
+++ D D N
Sbjct: 604 ----------DQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSP 653
Query: 220 -DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELA 274
+ Y++ ++ +D N P+ + V ++ +
Sbjct: 654 TQQLKKGDYSIYVLLSDAQNNPQLTV--VNATVCSCEGKAIKCQEKLVGGFDLPII 707
Score = 78.4 bits (193), Expect = 8e-15
Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 23/191 (12%)
Query: 36 LQTTGKLDRETV----DFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDY 91
+ G LDRE+ + Y + + D G G + + +LDVNDN P+ + V
Sbjct: 543 VTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTM 602
Query: 92 SVSLNESVLPGTKVLQVIATDNDQGDNA-KITYYL-SETERKF--------TNCQQQRPG 141
+ + +D D N L ++ + T+
Sbjct: 603 CD-------QNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQ 655
Query: 142 GSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDENAI 201
V D + Q T V + + + +
Sbjct: 656 QLKKGDYSIYVLLSDAQNNPQ--LTVVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGS 713
Query: 202 NGSVVAAVSVV 212
+++ ++
Sbjct: 714 VLALLILFLLL 724
Score = 78.4 bits (193), Expect = 9e-15
Identities = 25/167 (14%), Positives = 46/167 (27%), Gaps = 14/167 (8%)
Query: 1009 ARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYE-NTTVNTQLFHFQATDS 1067
R+A+ + L +V D + P F E SV +L +D
Sbjct: 6 LRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDC 65
Query: 1068 DIGVN-----NEVLFSI-GSGNKRDTFHMDPVTGILYLHKKLDYEEIN-SYVLNVTASDG 1120
+ + F + G H+ + D I S + V +
Sbjct: 66 TTRKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRH 125
Query: 1121 GTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINTINVPI 1167
+ + + V + R+ R+ + I I V
Sbjct: 126 RSGEEAHSRSSKLPVLTFPETHTGLK-----RKKRDWV-IPPIKVSE 166
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus
musculus}
Length = 559
Score = 370 bits (952), Expect = e-116
Identities = 132/568 (23%), Positives = 213/568 (37%), Gaps = 61/568 (10%)
Query: 622 ITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSS-----NPDDQFKIVETNGVIYLNKP 676
I +PEN+ + D N + YS++ P F I +G + + KP
Sbjct: 7 INLPENSRGPFPQELV-RIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 677 I---QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTP 733
+ + A D + + + + + D+ND+ P F + S+ E +
Sbjct: 66 LDRELIA---RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSK 122
Query: 734 VNNRFFELVAKDSD--LGNNGFVSYSIIEGN----GEDKFGIFPD-GFMY-VRNSLDRET 785
+ A D+D NG + Y I+ + F I + G + V LDRE
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK 182
Query: 786 RDYYALTVLAEDHGKYP---RSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFV 842
Y L + A D P S++ VI + D NDN PEF+ +F V EN D V
Sbjct: 183 VQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIV 241
Query: 843 GKLIATDKDVGRNA----ELSFALSNAKGDFEI----DSRNGFIKTMRSFDRENLLQTTG 894
L TDKD + + G F I +S +G + ++ D E
Sbjct: 242 ANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFET------ 295
Query: 895 QNFISLEATVSDNG------SPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIG 948
L + + V V + D N+N P F P ++ EG G
Sbjct: 296 NRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAG 354
Query: 949 TQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV----SKFN 1004
T + ++ D D + ++ Y +S + ID GQIT +LDRE+ + +N
Sbjct: 355 TMLTTLTAQDPDRYMQQNIRYTKLSDPAN-WLKIDPVNGQITTIAVLDRESPNVKNNIYN 413
Query: 1005 LKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQA 1064
LA D +S T + I +LD NDNAP + E++ T + A
Sbjct: 414 ATFLASDNG---IPPMSGTGTLQIYLLDINDNAPQVLPQEAETC----ETPEPNSINITA 466
Query: 1065 TDSDIGVNNEVL---FSIGSGNKRDTFHMDPVTG-ILYLHKKLDYEEINSYVLNVTASDG 1120
D DI N + + + ++ + G L+ K+ + E Y + + +D
Sbjct: 467 LDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDS 526
Query: 1121 GTPRLSTIFMFTINVEDCNDNPPSFPNT 1148
G P S I + + V C+ N
Sbjct: 527 GNPPKSNISILRVKVCQCDSNGDCTDVH 554
Score = 368 bits (947), Expect = e-115
Identities = 117/569 (20%), Positives = 218/569 (38%), Gaps = 54/569 (9%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYG----DPKKKFEINDRT 567
++ E+ G ++ SD + ++Y++ P F IN +
Sbjct: 5 PPINLPENSR------GPFPQELVRIRSDRDKNL-SLRYSVTGPGADQPPTGIFIINPIS 57
Query: 568 GEIITAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLDLNDNAPIFNRDKDEITI 624
G++ LDRE + ++L A + I ++D+NDN P F ++
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV 117
Query: 625 PENAAVGQEIYVARARDRD--SGVNSRIFYSLSSN-----PDDQFKIVETNGVIY-LNKP 676
PE + G + A D D + +N + Y + S + F I G I +
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 677 IQSPPGSTLTIEIVASDSGKQ---SLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTP 733
+ T+ I A+D LS+ + + + DVND+ P F ++ + E+
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV 237
Query: 734 VNNRFFELVAKDSDLGNNGF--VSYSIIEGNGEDKFGIFPD-----GFMYVRNSLDRETR 786
+ L D D + +Y I G+ +F I D G + V +D ET
Sbjct: 238 -DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETN 296
Query: 787 DYYALTVLAEDHG------KYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDS 840
+ LTV AE+ ++P S+ V + +ID N+N P F+ + + E L +
Sbjct: 297 RMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGT 355
Query: 841 FVGKLIATDKDVGRNAELSFAL-SNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFIS 899
+ L A D D + + S+ +ID NG I T+ DRE+ +
Sbjct: 356 MLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNAT 415
Query: 900 LEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDA 959
A+ DNG P + + +Y+ D NDN+PQ L P + + E ++ +D
Sbjct: 416 FLAS--DNGIPPMSGTGTLQIYLLDINDNAPQVL--PQEAETCETP--EPNSINITALDY 469
Query: 960 DEGLNGDVY---YKIISGNDDEHFSIDEATGQI-TISKLLDRETVSKFNLKVLARDAATV 1015
D N + + +++I+ G ++ + + + ++ D+
Sbjct: 470 DIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSG-- 527
Query: 1016 VSNQLSSTTMVTIDVLDENDNAPMFVKTE 1044
+ S+ +++ + V + N
Sbjct: 528 -NPPKSNISILRVKVCQCDSNGDCTDVHH 555
Score = 340 bits (873), Expect = e-104
Identities = 122/469 (26%), Positives = 189/469 (40%), Gaps = 42/469 (8%)
Query: 727 SLLESTPVNNRFFELVAKDSDLGNNGFVSYSII-EGNGEDKFGIF----PDGFMYVRNSL 781
+L E++ ELV SD N + YS+ G + GIF G + V L
Sbjct: 8 NLPENSRGPFPQ-ELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 782 DRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSF 841
DRE + L A D + + +VI++ID NDN+PEF + + SV E P ++
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126
Query: 842 VGKLIATDKD--VGRNAELSFAL------SNAKGDFEIDSRNGFIKTMRSF-DRENLLQT 892
V + A D D N L + + + + F I++ G I T+ + DRE
Sbjct: 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK---- 182
Query: 893 TGQNFISLEATVSDNGSP---RLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGT 949
+L +D L + + +TD NDN P+F + ++ E +
Sbjct: 183 --VQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDV 239
Query: 950 QVFRVSTMDADEGLNG--DVYYKIISGNDDEHFSI----DEATGQITISKLLDRETVSKF 1003
V ++ D D+ + Y+I G+ F+I + G +T+ K +D ET F
Sbjct: 240 IVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMF 299
Query: 1004 NLKVLARDAATV---VSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLF 1060
L V A + + + + ST V++ V+D N+N P F I E T L
Sbjct: 300 VLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLT 358
Query: 1061 HFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEI----NSYVLNVT 1116
A D D + + ++ S +DPV G + LD E N Y
Sbjct: 359 TLTAQDPDRYMQQNIRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFL 417
Query: 1117 ASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINTINV 1165
ASD G P +S I + D NDN P + E N+IN+
Sbjct: 418 ASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQ--EAETCETPEPNSINI 464
Score = 294 bits (755), Expect = 8e-88
Identities = 107/567 (18%), Positives = 190/567 (33%), Gaps = 108/567 (19%)
Query: 357 ISLLENSAANTLVATLTASDHDQ-------------------------DSITGQLTVKTK 391
I+L ENS L D+ + I+GQL+V
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 392 LDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGV 451
LDRE I + L+ A D + + + + D+NDN P F + +PE ++ G
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 452 SIVQVSAYDLD--CGKNAQVTYSIESGS-------------------------------- 477
++ V+A D D N + Y I S +
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185
Query: 478 -----EAVDGGN-----RKATENAIVEII-KNSMVETLEFEHYNGYTFSILEDHDKMQEN 526
+A D T A++ + N + + E+
Sbjct: 186 YTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTF---YGEVPEN------R 236
Query: 527 LGRDVGKIKIRNSDMQAT-IDQIKYAIVYGDPKKKFEI----NDRTGEIITAAKLDREEQ 581
+ V + + + D T Y I GDP +F I N G + +D E
Sbjct: 237 VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETN 296
Query: 582 SIYNLVVSARSRLSYGK---------TFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQ 632
++ L V+A +++ K V++T++D+N+N P F + I E G
Sbjct: 297 RMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGT 355
Query: 633 EIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPI----QSPPGSTLTIE 688
+ A+D D + I Y+ S+P + KI NG I + + +
Sbjct: 356 MLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNAT 415
Query: 689 IVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDL 748
+ASD+G +S ++ +Y+ D+ND+ P E E+ + A D D+
Sbjct: 416 FLASDNGIPPMSGTGTLQIYLLDINDNAPQV--LPQEAETCETPE--PNSINITALDYDI 471
Query: 749 GNNG---FVSYSIIEGNGEDKFGIFP--DGFMYVRNSLDRETRDYYALTVLAEDHGKYPR 803
N + + + I F + + Y + ++ D G P+
Sbjct: 472 DPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPK 531
Query: 804 SSSVPVVIHIIDENDNKPEFSNSSFVF 830
S+ + + + + N
Sbjct: 532 SNISILRVKVCQCDSNGDCTDVHHHHH 558
Score = 294 bits (754), Expect = 1e-87
Identities = 108/523 (20%), Positives = 173/523 (33%), Gaps = 145/523 (27%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
L T LDRE + + L A D + + + ++D+NDN P F H V ++ S+
Sbjct: 60 LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV--WNGSV 117
Query: 96 NESVLPGTKVLQVIATDNDQ--GDNAKITYYLSETERKFTNCQQQRPGGSCPKSCVF--- 150
E PGT V+ V A D D N + Y + Q P S P +F
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRIL----------SQAP--STPSPNMFTIN 165
Query: 151 -----------------------TVFARDHGSPRQDGR---TYVTVNLLDANDHDPVIKF 184
+ A D G + + D ND+ P
Sbjct: 166 NETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPE--- 222
Query: 185 RYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLN------------------------- 219
F + + V EN + +VA ++V D D+
Sbjct: 223 --FTAMTFYGEVPENRV-DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPN 279
Query: 220 ------------DREHINKYNLTIIATDKG------NPPRTATAFLIIHVNDVNDHEPVF 261
D E + LT+ A ++ P +TA + + V DVN++ P F
Sbjct: 280 SNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYF 338
Query: 262 EKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTK 321
+ E AG+ + +TA D D + I Y +S W +I+P +G ITT
Sbjct: 339 APNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPA-NWLKIDPVNGQITTI 397
Query: 322 T--------------------RDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLE 361
D G P L++ +LD ND PQ E
Sbjct: 398 AVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQ--EAETCE 455
Query: 362 NSAANTLVATLTASDHDQ------------------------DSITGQL-TVKTKLDRET 396
N++ +TA D+D + + G + K+
Sbjct: 456 TPEPNSIN--ITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLE 513
Query: 397 ITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQY 439
YE+ +I D G PP+S+ + + + + + N +
Sbjct: 514 AGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHH 556
Score = 279 bits (717), Expect = 1e-82
Identities = 118/579 (20%), Positives = 201/579 (34%), Gaps = 109/579 (18%)
Query: 442 QIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE----------------------- 478
+PE+++ ++ D KN + YS+
Sbjct: 8 NLPENSRGPF-PQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 479 -------------AVDGGNRKATENAIVEIIKNSMVETL-----EFEHYNGYTFSILEDH 520
AVD + + I V + EF H + S+ E
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVIN----VIDMNDNRPEFLH-QVWNGSVPEG- 120
Query: 521 DKMQENLGRDVGKIKIRNSDMQATID-QIKYAIVYGDPKKK----FEINDRTGEIITAAK 575
G V + ++D ++ ++Y I+ P F IN+ TG+IIT A
Sbjct: 121 ----SKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAA 176
Query: 576 -LDREEQSIYNLVVSAR-------SRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPEN 627
LDRE+ Y L++ A LS IT+ D+NDN P F +PEN
Sbjct: 177 GLDREKVQQYTLIIQATDMEGNPTYGLS-NTATAVITVTDVNDNPPEFTAMTFYGEVPEN 235
Query: 628 AAVGQEIYVARARDRDSGVN--SRIFYS-LSSNPDDQFKIV---ETN-GVIYLNKPI--- 677
V + D+D Y +P +F I+ +N G++ + KPI
Sbjct: 236 R-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFE 294
Query: 678 QSPPGSTLTIEIVASD------SGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLES 731
+ + + A + + S +V+V + DVN++ P F + E
Sbjct: 295 TNR---MFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEG 350
Query: 732 TPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRET----R 786
L A+D D + Y+ + + I P G + LDRE+
Sbjct: 351 LHAGTMLTTLTAQDPDRYMQQNIRYTKLSDP-ANWLKIDPVNGQITTIAVLDRESPNVKN 409
Query: 787 DYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLI 846
+ Y T LA D+G P S + + I+++D NDN P+ E P+S +
Sbjct: 410 NIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEA--ETCETPEPNSIN--IT 465
Query: 847 ATDKDVGRNA-----ELSFALSNAKGDFEIDSRNGFIKTMR-SFDRENLLQTTGQNFISL 900
A D D+ NA +L + K ++ I+ NG + +
Sbjct: 466 ALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLE------AGIYEV 519
Query: 901 EATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKV 939
++D+G+P + + V + + N +
Sbjct: 520 PIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
Score = 274 bits (704), Expect = 8e-81
Identities = 122/560 (21%), Positives = 193/560 (34%), Gaps = 128/560 (22%)
Query: 277 GSYVAGITATDEDTGVNAQIFYAFVSGNEHQW----FEINPTSGLITTKTR--------- 323
G + + D N + Y+ Q F INP SG ++
Sbjct: 15 GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARF 74
Query: 324 -------DGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASD 376
D N + ++++D ND +P+F V N S+ E S T V T+TA D
Sbjct: 75 HLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAID 134
Query: 377 HDQ---------------------------DSITGQL-TVKTKLDRETITDYELKVIAKD 408
D ++ TG + TV LDRE + Y L + A D
Sbjct: 135 ADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
Query: 409 HGTPPQ---SSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGK 465
P S+TAT + + DVNDN P F ++ ++PE+ V V + ++ D D
Sbjct: 195 MEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPH 253
Query: 466 NA--QVTYSIESGSEAVDGGNR------KATENAIVEIIKNSMVETLEFEHYNGYTFSI- 516
Y I G D R + + +V ++K ++FE + ++
Sbjct: 254 TPAWNAAYRISGG----DPTGRFAILTDPNSNDGLVTVVKP-----IDFETNRMFVLTVA 304
Query: 517 ------------------------LEDHD------------KMQENL--GRDVGKIKIRN 538
+ D + + +E L G + + ++
Sbjct: 305 AENQVPLAKGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQEEGLHAGTMLTTLTAQD 364
Query: 539 SDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREE----QSIYNLVVSAR--- 591
D I+Y + DP +I+ G+I T A LDRE +IYN A
Sbjct: 365 PDRYMQ-QNIRYTKL-SDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNG 422
Query: 592 -SRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRI 650
+S G + I LLD+NDNAP E E A D D N+
Sbjct: 423 IPPMS-GTGTLQIYLLDINDNAPQVL--PQEAETCETPEPNS--INITALDYDIDPNAGP 477
Query: 651 FY----SLSSNPDDQFKIVETNGVI-YLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSV 705
F + I NG LN I+ + I+ +DSG S+ +
Sbjct: 478 FAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISIL 537
Query: 706 NVYIQDVNDHTPVFDMSSYE 725
V + + + D+ +
Sbjct: 538 RVKVCQCDSNGDCTDVHHHH 557
Score = 258 bits (661), Expect = 5e-75
Identities = 98/499 (19%), Positives = 162/499 (32%), Gaps = 113/499 (22%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I +++L A D ++I+V D+ND+ P F ++ + E + G+Y
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126
Query: 280 VAGITATDED--TGVNAQIFYAFVSGN----EHQWFEINPTSGLITTKT----------- 322
V +TA D D +N + Y +S F IN +G I T
Sbjct: 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQY 186
Query: 323 ------RDGGPNPK---WAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLT 373
D NP +++ D ND P+FT + EN + +VA LT
Sbjct: 187 TLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLT 245
Query: 374 ASDHDQ---------------------------DSITGQLTVKTKLDRETITDYELKVIA 406
+D DQ +S G +TV +D ET + L V A
Sbjct: 246 VTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAA 305
Query: 407 KDHG------TPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYD 460
++ P STATV + + DVN+ NP F P+ + E G + ++A D
Sbjct: 306 ENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQD 364
Query: 461 LDCGKNAQVTYSIESGSE-----------------------------------AVDGGNR 485
D + Y+ S A D G
Sbjct: 365 PDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIP 424
Query: 486 KATENAIVEIIKNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATI 545
+ ++I N +L + E + I + D+
Sbjct: 425 PMSGTGTLQI---------YLLDINDNAPQVLPQEAETCETPEPNSINITALDYDIDPNA 475
Query: 546 DQIKYAIVYGDP--KKKFEINDRTGEIIT-AAKLDREEQSIYNLVVSAR----SRLSYGK 598
+ + K+ + IN G+ K+ E IY + + S
Sbjct: 476 GPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKS-NI 534
Query: 599 TFVNITLLDLNDNAPIFNR 617
+ + + + + N +
Sbjct: 535 SILRVKVCQCDSNGDCTDV 553
Score = 254 bits (652), Expect = 1e-73
Identities = 105/503 (20%), Positives = 170/503 (33%), Gaps = 131/503 (26%)
Query: 93 VSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS------ETERKFT--------NCQQ- 137
++L E+ G +++ +D+ N + Y ++ F + +
Sbjct: 7 INLPEN-SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 138 ----QRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGF 193
A D + + + +N++D ND+ P F
Sbjct: 66 LDRELIA------RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPE-----FLHQVWN 114
Query: 194 ATVDENAINGSVVAAVSVVDPDE--GLN-------------------------------- 219
+V E + G+ V V+ +D D+ LN
Sbjct: 115 GSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITV 174
Query: 220 ----DREHINKYNLTIIATDKGNPP---RTATAFLIIHVNDVNDHEPVFEKSEYSAVLSE 272
DRE + +Y L I ATD P + TA +I V DVND+ P F + + E
Sbjct: 175 AAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPE 234
Query: 273 LAPAGSYVAGITATDEDTGVNA--QIFYAFVSGNEHQWFEINPTS----GLITTK----- 321
VA +T TD+D Y G+ F I GL+T
Sbjct: 235 NRV-DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDF 293
Query: 322 -----------------TRDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSA 364
G +P + + V+++D N+ P F N I E
Sbjct: 294 ETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLH 352
Query: 365 ANTLVATLTASDHDQ--------------------DSITGQLTVKTKLDRETITD----Y 400
A T++ TLTA D D+ D + GQ+T LDRE+ Y
Sbjct: 353 AGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIY 412
Query: 401 ELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYD 460
+A D+G PP S T T+ +++ D+NDN P P + E + + ++A D
Sbjct: 413 NATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAE--TCETPEPNS--INITALD 468
Query: 461 LDCGKNA-QVTYSIESGSEAVDG 482
D NA + + +
Sbjct: 469 YDIDPNAGPFAFDLPLSPVTIKR 491
Score = 160 bits (406), Expect = 2e-41
Identities = 53/295 (17%), Positives = 92/295 (31%), Gaps = 65/295 (22%)
Query: 27 PSGETSYLYLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQ------VNVTILDVNDN 80
++ + +D ET + L ++A + + V+VT++DVN+N
Sbjct: 276 TDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN 335
Query: 81 PPIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYL-SETERKFT------ 133
P FA + + E + GT + + A D D+ I Y S+
Sbjct: 336 P-YFAPNP--KIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNG 392
Query: 134 NCQQQRP-----GGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFP 188
T A D+G P G + + LLD ND+ P + +
Sbjct: 393 QITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQE-- 450
Query: 189 STAGFATVDENAINGSVVAAVSVVDPDEGLN----------------------------- 219
A E S+ ++ +D D N
Sbjct: 451 -----AETCETPEPNSIN--ITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFA 503
Query: 220 ------DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSA 268
Y + II TD GNPP++ + L + V + + + +
Sbjct: 504 QLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 369 bits (949), Expect = e-115
Identities = 111/558 (19%), Positives = 206/558 (36%), Gaps = 57/558 (10%)
Query: 622 ITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSS-----NPDDQFKIVETNGVIYLNKP 676
I+ PEN + + +++FYS++ P F I G + + +P
Sbjct: 7 ISCPENEKGEFPKNLV-QIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 677 I---QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTP 733
+ + A S +++ + + + D ND+ P F +E S+ E
Sbjct: 66 LDREAIA---KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 734 VNNRFFELVAKDSDLG---NNGFVSYSIIEGN----GEDKFGIFPD-GFMYVRNS-LDRE 784
++ A D+D N ++Y+I+ + ++ F + D G + V S LDRE
Sbjct: 123 PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRE 182
Query: 785 TRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGK 844
+ Y L V A D S++ VI + D NDN P F+ S++ V EN ++ +
Sbjct: 183 SYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIAT 241
Query: 845 LIATDKDVGRNAELSFA---LSNAKGDFEI----DSRNGFIKTMRSFDRENLLQTTGQNF 897
L TD D +++ F + + +G +KT + D E +
Sbjct: 242 LKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEA------KQQ 295
Query: 898 ISLEATVSDNG---SPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRV 954
L V + + V V + D N+ P F+ +V++ E +G ++
Sbjct: 296 YILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITSY 354
Query: 955 STMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV-----SKFNLKVLA 1009
+ + D ++ + Y+I + I+ TG I +DRE S + ++A
Sbjct: 355 TAREPDTFMDQKITYRIWRDTANW-LEINPETGAIFTRAEMDREDAEHVKNSTYVALIIA 413
Query: 1010 RDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDI 1069
D S + T + + +LD NDNAP+ + D D+
Sbjct: 414 TDDG---SPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHI-----ITILDPDL 465
Query: 1070 GVNNEVL-FSIGSGNKRD-TFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLST 1127
N + G + T + + + EI Y +++ +D T
Sbjct: 466 PPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVT 525
Query: 1128 IFMFTINVEDCNDNPPSF 1145
++V DC +
Sbjct: 526 T--LDVHVCDCEGTVNNC 541
Score = 351 bits (902), Expect = e-109
Identities = 114/569 (20%), Positives = 205/569 (36%), Gaps = 64/569 (11%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYG----DPKKKFEINDRT 567
S E+ G + S+ ++ Y+I P F I T
Sbjct: 5 PPISCPENEK------GEFPKNLVQIKSNRDKET-KVFYSITGQGADKPPVGVFIIERET 57
Query: 568 GEIITAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLDLNDNAPIFNRDKDEITI 624
G + LDRE + Y L A S + IT+ D NDN P F ++ E ++
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 625 PENAAVGQEIYVARARDRDSGV---NSRIFYSLSSN-----PDDQFKIVETNGVIYLNKP 676
E A G + A D D V N+ I Y++ S + F + GVI +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT- 176
Query: 677 IQSPPGSTL--------TIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSL 728
S L T+ + A+D + LS+ + ++D+ND+ PVF+ S+Y+ +
Sbjct: 177 ------SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV 230
Query: 729 LESTPVNNRFFELVAKDSDLGNNGF--VSYSIIEGNGEDKFGIFPD-----GFMYVRNSL 781
E+ N R L D D N Y+++ + + +F + D G + L
Sbjct: 231 PENEV-NARIATLKVTDDDAPNTPAWKAVYTVV-NDPDQQFVVVTDPTTNDGILKTAKGL 288
Query: 782 DRETRDYYALTVLAEDHGKY---PRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPP 838
D E + Y L V E+ + S+ V + ++D N+ P F + V E+
Sbjct: 289 DFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPEDFGV 347
Query: 839 DSFVGKLIATDKDVGRNAELSFAL-SNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNF 897
+ A + D + ++++ + + EI+ G I T DRE+ +
Sbjct: 348 GQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTY 407
Query: 898 ISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTM 957
+D+GSP + + + D NDN+P + ++ +
Sbjct: 408 -VALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHI-----ITIL 461
Query: 958 DADEGLNGD-VYYKIISGNDDE-HFSIDEATGQITISKLLDRETVSKFNLKVLARDAATV 1015
D D N ++ G ++A + I + + ++ + + D
Sbjct: 462 DPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLAD---- 517
Query: 1016 VSNQLSSTTMVTIDVLDENDNAPMFVKTE 1044
+ T + + V D +K
Sbjct: 518 -NQNKDQVTTLDVHVCDCEGTVNNCMKAH 545
Score = 342 bits (880), Expect = e-105
Identities = 112/460 (24%), Positives = 191/460 (41%), Gaps = 37/460 (8%)
Query: 727 SLLESTPVNNRFFELVAKDSDLGNNGFVSYSII-EGNGEDKFGIF----PDGFMYVRNSL 781
S E+ LV S+ V YSI +G + G+F G++ V L
Sbjct: 8 SCPENEKGEFPKN-LVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPL 66
Query: 782 DRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSF 841
DRE Y L A + +VI + D+NDN+PEF+ F SV E P +
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 842 VGKLIATDKD---VGRNAELSFAL------SNAKGDFEIDSRNGFIKTMRS-FDRENLLQ 891
V K+ ATD D NA +++ + K F ++ G I + S DRE+
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES--- 183
Query: 892 TTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQV 951
+L +D L K + + D NDN+P F + Y+ Q+ E + ++
Sbjct: 184 ---YPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE-VNARI 239
Query: 952 FRVSTMDADEGLNG--DVYYKIISGNDDEHFSI----DEATGQITISKLLDRETVSKFNL 1005
+ D D Y + + D+ F + G + +K LD E ++ L
Sbjct: 240 ATLKVTDDDAPNTPAWKAVY-TVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYIL 298
Query: 1006 KVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQAT 1065
V + + + ST VT+DV+D N+ AP+F+ E ++ V E+ V ++ + A
Sbjct: 299 HVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAR 357
Query: 1066 DSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEI-----NSYVLNVTASDG 1120
+ D ++ ++ + I ++P TG ++ ++D E+ ++YV + A+D
Sbjct: 358 EPDTFMDQKITYRIWRDTAN-WLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDD 416
Query: 1121 GTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPI 1160
G+P + + + D NDN P + R P
Sbjct: 417 GSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPH 456
Score = 288 bits (739), Expect = 9e-86
Identities = 99/504 (19%), Positives = 161/504 (31%), Gaps = 117/504 (23%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
L+ T LDRE + Y L A +++ +T+ D NDN P F V + S+
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEV--FEGSV 117
Query: 96 NESVLPGTKVLQVIATDNDQG---DNAKITYYLSETERKFTNCQQ---QRPGG--SCPKS 147
E +PGT V++V ATD D NA I Y + + + + R G S S
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 148 CV---------FTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDE 198
+ V A D + + D ND+ PV F + V E
Sbjct: 178 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPV-----FNPSTYQGQVPE 232
Query: 199 NAINGSVVAAVSVVDPDEGLN------------------------------------DRE 222
N + + +A + V D D D E
Sbjct: 233 NEV-NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFE 291
Query: 223 HINKYNLTIIATDKG---NPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
+Y L + ++ +TA + + V DVN+ P+F +E + E G
Sbjct: 292 AKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQE 350
Query: 280 VAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT----------------- 322
+ TA + DT ++ +I Y W EINP +G I T+
Sbjct: 351 ITSYTAREPDTFMDQKITYRIWRDTA-NWLEINPETGAIFTRAEMDREDAEHVKNSTYVA 409
Query: 323 ----RDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHD 378
D G L + +LD ND P + + + ++ T D D
Sbjct: 410 LIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFC--QRNPQPHII---TILDPD 464
Query: 379 Q-----------------------DSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQS 415
+ + + I +Y++ + D+ Q
Sbjct: 465 LPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQV 524
Query: 416 STATVFLFIEDVNDNNPVFYPSQY 439
+T V + D + +
Sbjct: 525 TTLDV--HVCDCEGTVNNCMKAHH 546
Score = 272 bits (697), Expect = 5e-80
Identities = 105/558 (18%), Positives = 184/558 (32%), Gaps = 106/558 (18%)
Query: 357 ISLLENSAANTLVATLTASDHDQ-------------------------DSITGQLTVKTK 391
IS EN L ++ + TG L V
Sbjct: 7 ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 392 LDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGV 451
LDRE I Y L A + + + D NDN P F + + E G
Sbjct: 66 LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125
Query: 452 SIVQVSAYDLD---CGKNAQVTYSIESGS------------------------------- 477
S+++VSA D D NA + Y+I S
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 478 ------EAVD--GGNRKATENAIVEII-KNSMVETLEFEHYNGYTFSILEDHDKMQENLG 528
+A D G T A++ + N Y + E+ +
Sbjct: 186 TYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY---QGQVPEN------EVN 236
Query: 529 RDVGKIKIRNSDMQAT-IDQIKYAIVYGDPKKKFEI----NDRTGEIITAAKLDREEQSI 583
+ +K+ + D T + Y +V DP ++F + G + TA LD E +
Sbjct: 237 ARIATLKVTDDDAPNTPAWKAVYTVV-NDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQ 295
Query: 584 YNLVVSARSRLSYGK------TFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVA 637
Y L V + + V + ++D+N+ APIF + + +PE+ VGQEI
Sbjct: 296 YILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSY 354
Query: 638 RARDRDSGVNSRIFYSLSSNPDDQFKIVETNGVIYLNKP-----IQSPPGSTLTIEIVAS 692
AR+ D+ ++ +I Y + + + +I G I+ + ST I+A+
Sbjct: 355 TAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIAT 414
Query: 693 DSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNG 752
D G + ++ + + DVND+ P+ + + + P + D DL N
Sbjct: 415 DDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHI-----ITILDPDLPPNT 469
Query: 753 -FVSYSIIEGNGED-KFGIFPD-GFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPV 809
+ + G + + Y + + D+ + +++ V
Sbjct: 470 SPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDV 529
Query: 810 VIHIIDENDNKPEFSNSS 827
H+ D +
Sbjct: 530 --HVCDCEGTVNNCMKAH 545
Score = 272 bits (697), Expect = 6e-80
Identities = 111/566 (19%), Positives = 190/566 (33%), Gaps = 99/566 (17%)
Query: 443 IPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE------------------------ 478
PE+ + G + + K +V YSI
Sbjct: 9 CPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLD 67
Query: 479 ------------AVDGGNRKATENAIVEIIKNSMVE-----TLEFEHYNGYTFSILEDHD 521
AV + + I V EF + S+ E
Sbjct: 68 REAIAKYILYSHAVSSNGEAVEDPMEIVIT----VTDQNDNRPEFTQ-EVFEGSVAEG-- 120
Query: 522 KMQENLGRDVGKIKIRNSDMQATID--QIKYAIVYGDPKKK----FEINDRTGEIITAAK 575
G V K+ ++D I Y IV DP+ F +N TG I
Sbjct: 121 ---AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 576 -LDREEQSIYNLVVSAR----SRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAV 630
LDRE Y LVV A LS IT+ D+NDNAP+FN + +PEN V
Sbjct: 178 GLDRESYPTYTLVVQAADLQGEGLS-TTAKAVITVKDINDNAPVFNPSTYQGQVPENE-V 235
Query: 631 GQEIYVARARDRDSGVN--SRIFYSLSSNPDDQFKIV---ETN-GVIYLNKPIQSPPGST 684
I + D D+ + Y++ ++PD QF +V TN G++ K +
Sbjct: 236 NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQ 295
Query: 685 LTIEIVASDSG---KQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFEL 741
+ + + + S +V V + DVN+ P+F + + E V
Sbjct: 296 YILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSY 354
Query: 742 VAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRETRDY-----YALTVLA 795
A++ D + ++Y I + + I P+ G ++ R +DRE ++ Y ++A
Sbjct: 355 TAREPDTFMDQKITYRIWR-DTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIA 413
Query: 796 EDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRN 855
D G + + +++ ++D NDN P + F P + D D+ N
Sbjct: 414 TDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQP-----HIITILDPDLPPN 468
Query: 856 AE-LSFALS---NAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPR 911
+ L+ + E + ++ + ++DN +
Sbjct: 469 TSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLE------IGEYKIHLKLADNQNKD 522
Query: 912 LKDKVKVDVYITDQNDNSPQFLRTPY 937
+ V V D ++ +
Sbjct: 523 QVTTLDVHV--CDCEGTVNNCMKAHH 546
Score = 271 bits (694), Expect = 1e-79
Identities = 105/547 (19%), Positives = 188/547 (34%), Gaps = 114/547 (20%)
Query: 277 GSYVAGITATDEDTGVNAQIFYAFVSGNEHQW----FEINPTSGLITTKTR--------- 323
G + + + ++FY+ + F I +G +
Sbjct: 15 GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY 74
Query: 324 -------DGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASD 376
++ +++ D+ND +P+FTQ V S+ E + T V ++A+D
Sbjct: 75 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATD 134
Query: 377 HDQ----------------------------DSITGQLTVKTK-LDRETITDYELKVIAK 407
D + TG ++V T LDRE+ Y L V A
Sbjct: 135 ADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAA 194
Query: 408 DHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNA 467
D S+TA + ++D+NDN PVF PS Y Q+PE+ V I + D D
Sbjct: 195 DLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE-VNARIATLKVTDDDAPNTP 253
Query: 468 Q--VTYSIESGSEAV-DGGNRKATENAIVEIIKNSMVETLEFEHYNGYTFSIL-EDHDKM 523
Y++ + + T + I++ K L+FE Y + E+ +
Sbjct: 254 AWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAK-----GLDFEAKQQYILHVRVENEEPF 308
Query: 524 QENLGRDVGKIKIRNSD-----------MQATID-----------------------QIK 549
+ +L + + D + + +I
Sbjct: 309 EGSLVPSTATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKIT 368
Query: 550 YAIVYGDPKKKFEINDRTGEIITAAKLDREE-----QSIYNLVVSAR----SRLSYGKTF 600
Y I D EIN TG I T A++DRE+ S Y ++ A + G
Sbjct: 369 YRIW-RDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIAT-GTGT 426
Query: 601 VNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIF-YSLSSNPD 659
+ + LLD+NDNAPI + + + I D D N+ F L+
Sbjct: 427 LLLVLLDVNDNAPIP--EPRNMQFCQRNPQPHII---TILDPDLPPNTSPFTAELTHGAS 481
Query: 660 DQFKI--VETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTP 717
+ I + + +P + I + +D+ + + +++V++ D
Sbjct: 482 VNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVT--TLDVHVCDCEGTVN 539
Query: 718 VFDMSSY 724
+ +
Sbjct: 540 NCMKAHH 546
Score = 267 bits (684), Expect = 4e-78
Identities = 90/356 (25%), Positives = 158/356 (44%), Gaps = 34/356 (9%)
Query: 830 FSVMENLPPDSFVGKLIATDKDVGRNAELSFALS------NAKGDFEIDSRNGFIKTMRS 883
S EN F L+ + + ++ ++++ G F I+ G++K +
Sbjct: 7 ISCPENEKG-EFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 884 FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISE 943
DRE L + + ++D +++ + +TDQNDN P+F + ++ ++E
Sbjct: 66 LDREA------IAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 944 GASIGTQVFRVSTMDADEG---LNGDVYYKIISGNDD----EHFSIDEATGQI-TISKLL 995
GA GT V +VS DAD+ N + Y I+S + + F+++ TG I ++ L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 996 DRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTV 1055
DRE+ + L V A D LS+T I V D NDNAP+F + + V EN V
Sbjct: 180 DRESYPTYTLVVQAADLQG---EGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE-V 235
Query: 1056 NTQLFHFQATDSDIGVNN--EVLFSIGSGNKRDTF-HMDPVT--GILYLHKKLDYEEINS 1110
N ++ + TD D + ++++ + + DP T GIL K LD+E
Sbjct: 236 NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQ 295
Query: 1111 YVLNVTASDGGT---PRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINTI 1163
Y+L+V + + + T++V D N+ P F ++ E+ +
Sbjct: 296 YILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQE 350
Score = 261 bits (669), Expect = 4e-76
Identities = 96/486 (19%), Positives = 157/486 (32%), Gaps = 97/486 (19%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 67 DREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTS 126
Query: 280 VAGITATDEDTGV---NAQIFYAFVSGNEHQW----FEINPTSGLITTKT---------- 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 127 VMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT 186
Query: 323 -------RDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTAS 375
D + +++ D ND P F + + EN N +ATL +
Sbjct: 187 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVT 245
Query: 376 DHDQ--------------------------DSITGQLTVKTKLDRETITDYELKVIAKDH 409
D D + G L LD E Y L V ++
Sbjct: 246 DDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENE 305
Query: 410 GT---PPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKN 466
STATV + + DVN+ P+F P++ ++PED VG I +A + D +
Sbjct: 306 EPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMD 364
Query: 467 AQVTYSIESGSE---AVDGGNRKATENAIVEIIKNSMVETLEFEHYNGYTFSIL------ 517
++TY I + ++ E + E E + Y I+
Sbjct: 365 QKITYRIWRDTANWLEIN------PETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGS 418
Query: 518 ------------------------EDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIV 553
+ + + I I + D+ +
Sbjct: 419 PIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQR-NPQPHIITILDPDLPPNTSPFTAELT 477
Query: 554 YGDPKK-KFEINDRTGEIITAAKLDREEQSIYNLVVSARSRLSY-GKTFVNITLLDLNDN 611
+G E ND E + E Y + + + T +++ + D
Sbjct: 478 HGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDVHVCDCEGT 537
Query: 612 APIFNR 617
+
Sbjct: 538 VNNCMK 543
Score = 253 bits (649), Expect = 2e-73
Identities = 89/496 (17%), Positives = 153/496 (30%), Gaps = 127/496 (25%)
Query: 91 YSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS------ETERKFT--------NCQ 136
+S E+ G ++ +++ K+ Y ++ F
Sbjct: 5 PPISCPENE-KGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 137 Q-----QRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTA 191
Q + A + + + + D ND+ P F
Sbjct: 64 QPLDREAIA------KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPE-----FTQEV 112
Query: 192 GFATVDENAINGSVVAAVSVVDPDEGLN-------------------------------- 219
+V E A+ G+ V VS D D+ +N
Sbjct: 113 FEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVI 172
Query: 220 -------DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSE 272
DRE Y L + A D + TA +I V D+ND+ PVF S Y + E
Sbjct: 173 SVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPE 232
Query: 273 LAPAGSYVAGITATDEDTGVNAQIFYAF-VSGNEHQWFEINPTS----GLITTKT----- 322
+ +A + TD+D + V + Q F + G++ T
Sbjct: 233 NEV-NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFE 291
Query: 323 -----------RDGGP---NPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTL 368
+ P + + + V ++D N+ P F + + E+
Sbjct: 292 AKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQE 350
Query: 369 VATLTASDHDQ--------------------DSITGQLTVKTKLDRETITD-----YELK 403
+ + TA + D + TG + + ++DRE Y
Sbjct: 351 ITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVAL 410
Query: 404 VIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDC 463
+IA D G+P + T T+ L + DVNDN P+ P + I + D D
Sbjct: 411 IIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQ--FCQRNPQPHII---TILDPDL 465
Query: 464 GKNAQ-VTYSIESGSE 478
N T + G+
Sbjct: 466 PPNTSPFTAELTHGAS 481
Score = 151 bits (384), Expect = 1e-38
Identities = 55/292 (18%), Positives = 90/292 (30%), Gaps = 70/292 (23%)
Query: 27 PSGETSYLYLQTTGKLDRETVDFYQLNISARDGGT---PTRYGYLQVNVTILDVNDNPPI 83
T+ L+T LD E Y L++ + V V ++DVN+ PI
Sbjct: 273 TDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-API 331
Query: 84 FAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSE---------------- 127
F + V + E G ++ A + D + KITY +
Sbjct: 332 FMPAE--RRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIF 389
Query: 128 TERKFTNCQQQRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYF 187
T + + S + V + A D GSP G + + LLD ND+ P+ + R
Sbjct: 390 TRAEMDREDAEHVKNS---TYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRN- 445
Query: 188 PSTAGFATVDENAINGSVVAAVSVVDPDEGLN---------------------------- 219
+ ++ +DPD N
Sbjct: 446 ------MQFCQRNPQPHIITI---LDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESL 496
Query: 220 -----DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEY 266
I +Y + + D N + T L +HV D K+ +
Sbjct: 497 ILQPRKDLEIGEYKIHLKLADNQNKDQVTT--LDVHVCDCEGTVNNCMKAHH 546
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 358 bits (920), Expect = e-111
Identities = 115/557 (20%), Positives = 200/557 (35%), Gaps = 57/557 (10%)
Query: 621 EITIPENAAVGQEIYVARARDRDSGVNSRIFYSLS-----SNPDDQFKIVETNGVIYLNK 675
+++ E + + + ++++YS++ + P F+I G + + +
Sbjct: 14 KVSENERGPFPKRL---VQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTR 70
Query: 676 PI---QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLEST 732
P+ + + A + + + + D ND+ P F + S+ E
Sbjct: 71 PLDREEYD---KYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGV 127
Query: 733 PVNNRFFELVAKDSD---LGNNGFVSYSIIEGNGEDK----FGIFPD-GFMYV-RNSLDR 783
+ + A D D NG +SYSI++ + E+ F I + G + + LDR
Sbjct: 128 QPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 187
Query: 784 ETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVG 843
E Y LTV A D S +I I D NDN P F ++ V EN V
Sbjct: 188 EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQ 246
Query: 844 KLIATDKDVGRNAE---LSFALSNAKGDFEI----DSRNGFIKTMRSFDRENLLQTTGQN 896
+L TD D+ + N G F I +S G + T + D E +
Sbjct: 247 RLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFEL------RK 300
Query: 897 FISLEATVSD---NGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFR 953
L+ TV + P V V + D N+ P F+ +V +SE S G ++
Sbjct: 301 QYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIIS 359
Query: 954 VSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV----SKFNLKVLA 1009
+ D D+ + Y I + + ++++ G +T + LDRE+ + + + +L
Sbjct: 360 LVAQDPDKQQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLV 418
Query: 1010 RDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDI 1069
D + + T + + VLD NDN P+ + +D+DI
Sbjct: 419 TDDG---VSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV-----LTISDADI 470
Query: 1070 GVNNEVL-FSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTI 1128
N S+ G+ G L + Y + V SD T+
Sbjct: 471 PPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTV 530
Query: 1129 FMFTINVEDCNDNPPSF 1145
V C
Sbjct: 531 --VNATVCSCEGKAIKC 545
Score = 348 bits (894), Expect = e-107
Identities = 124/472 (26%), Positives = 195/472 (41%), Gaps = 36/472 (7%)
Query: 713 NDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSII-EGNGEDKFGIF- 770
+ H + + + S E P R LV S+ V YSI +G G+F
Sbjct: 2 HHHHHDWVIPPIKVSENERGPFPKR---LVQIKSNKDRFNKVYYSITGQGADNPPQGVFR 58
Query: 771 ---PDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSS 827
G+M V LDRE D Y L+ A P + + I++ID+NDN+P+F+
Sbjct: 59 IEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDV 118
Query: 828 FVFSVMENLPPDSFVGKLIATDKD---VGRNAELSFAL------SNAKGDFEIDSRNGFI 878
F SV E + P + V + ATD+D N LS+++ F I+ G I
Sbjct: 119 FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVI 178
Query: 879 KTMRSF-DRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPY 937
+ + DRE +L +D L + K + ITD NDN+P F Y
Sbjct: 179 SLIGTGLDREK------FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTY 232
Query: 938 KVQISEGASIGTQVFRVSTMDADE-GLNGDVYYKIISGNDDEHFSI----DEATGQITIS 992
+ E IG +V R+S D D G I N+ F+I + G +T +
Sbjct: 233 TALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTA 291
Query: 993 KLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYEN 1052
K LD E ++ L++ +A +ST VT+ V D N+ P FV S++ V E+
Sbjct: 292 KGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSED 350
Query: 1053 TTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYE----EI 1108
+ ++ A D D ++ + IG+ R ++ GI+ + LD E +
Sbjct: 351 LSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNGIVTGNGNLDRESEYVKN 409
Query: 1109 NSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPI 1160
N+Y + + +D G + ++V D NDN P + P
Sbjct: 410 NTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ 461
Score = 345 bits (887), Expect = e-106
Identities = 118/562 (20%), Positives = 202/562 (35%), Gaps = 62/562 (11%)
Query: 513 TFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYG----DPKKKFEINDRTG 568
+ E+ + + +IK S+ ++ Y+I P+ F I TG
Sbjct: 12 PIKVSENER---GPFPKRLVQIK---SNKDRFN-KVYYSITGQGADNPPQGVFRIEWETG 64
Query: 569 EIITAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLDLNDNAPIFNRDKDEITIP 625
++ LDREE Y L A S + I ++D NDN P F +D ++
Sbjct: 65 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 124
Query: 626 ENAAVGQEIYVARARDRDS---GVNSRIFYSLSSN-----PDDQFKIVETNGVIYLNKPI 677
E G ++ A D D +N + YS+ + F I GVI L
Sbjct: 125 EGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI--- 181
Query: 678 QSPPGSTL--------TIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLL 729
G+ L T+ + A+D LS + + I D ND+ P+FD +Y +
Sbjct: 182 ----GTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVP 237
Query: 730 ESTPVNNRFFELVAKDSDL-GNNGFVSYSIIEGNGEDKFGIFPD-----GFMYVRNSLDR 783
E+ L D D+ G + + I N F I D G + LD
Sbjct: 238 ENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDF 296
Query: 784 ETRDYYALTVLAED---HGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDS 840
E R Y L + E+ +S+ V + + D N+ P F + V E+L
Sbjct: 297 ELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGE 355
Query: 841 FVGKLIATDKDVGRNAELSFAL-SNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFIS 899
+ L+A D D + +LS+ + ++ ++ NG + + DRE+ +
Sbjct: 356 KIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVI 415
Query: 900 LEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDA 959
+ T D+G + +++ D NDN P + + ++ DA
Sbjct: 416 MLVT--DDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDA 468
Query: 960 DEGLNGDVY-YKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSN 1018
D N Y + G+D + ++ G + + +++ VL D +
Sbjct: 469 DIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD-----AQ 523
Query: 1019 QLSSTTMVTIDVLDENDNAPMF 1040
T+V V A
Sbjct: 524 NNPQLTVVNATVCSCEGKAIKC 545
Score = 288 bits (740), Expect = 7e-86
Identities = 100/556 (17%), Positives = 189/556 (33%), Gaps = 98/556 (17%)
Query: 347 KPQFTQNVLNISLLENSAANTLVATLTASDHDQ-----------------------DSIT 383
+ + +S E + + S+ D+ + T
Sbjct: 5 HHDWVIPPIKVSENERGPFPKRLVQIK-SNKDRFNKVYYSITGQGADNPPQGVFRIEWET 63
Query: 384 GQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQI 443
G + V LDRE Y L A P + + + D NDN P F + +
Sbjct: 64 GWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSV 123
Query: 444 PEDTQVGVSIVQVSAYDLD---CGKNAQVTYSIESGS----------------------- 477
E Q G ++ VSA D D N ++YSI
Sbjct: 124 REGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT 183
Query: 478 --------------EAVD--GGNRKATENAIVEII-KNSMVETLEFEHYNGYTFSILEDH 520
+A D G AI++I N + + Y T + E+
Sbjct: 184 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTY---TALVPEN- 239
Query: 521 DKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEI----NDRTGEIITAAKL 576
+G +V ++ + + DM T + + F I G + TA L
Sbjct: 240 -----EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGL 294
Query: 577 DREEQSIYNLVVSARSRLSYGK------TFVNITLLDLNDNAPIFNRDKDEITIPENAAV 630
D E + Y L ++ + + V +T+ D+N+ P F + + E+ +
Sbjct: 295 DFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSR 353
Query: 631 GQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPI----QSPPGSTLT 686
G++I A+D D ++ Y + ++P + + NG++ N + + +T T
Sbjct: 354 GEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYT 413
Query: 687 IEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDS 746
+ ++ +D G + ++ +++ DVND+ PV + P L D+
Sbjct: 414 VIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV-----LTISDA 468
Query: 747 DLGNNGFV-SYSIIEGNGEDKFGIFP-DGFMYVRNSLDRETRDYYALTVLAEDHGKYPRS 804
D+ N + S+ G+ G + + + + Y++ VL D P+
Sbjct: 469 DIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL 528
Query: 805 SSVPVVIHIIDENDNK 820
+ V + + K
Sbjct: 529 TVVNATVCSCEGKAIK 544
Score = 280 bits (719), Expect = 6e-83
Identities = 103/509 (20%), Positives = 156/509 (30%), Gaps = 139/509 (27%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
+ T LDRE D Y L+ A +++ + ++D NDN P F V + S+
Sbjct: 66 MLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDV--FRGSV 123
Query: 96 NESVLPGTKVLQVIATDNDQ---GDNAKITYYLSETERKFTNCQQQRPGGSCPKSCVF-- 150
E V PGT+V+ V ATD D N ++Y + +Q P P +F
Sbjct: 124 REGVQPGTQVMAVSATDEDDNIDSLNGVLSYSIL----------KQDP--EEPIPNLFTI 171
Query: 151 ------------------------TVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRY 186
TV A D + + DAND+ P+
Sbjct: 172 NRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPI----- 226
Query: 187 FPSTAGFATVDENAINGSVVAAVSVVDPDEGLN--------------------------- 219
F A V EN I G V +SV D D
Sbjct: 227 FDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQ 285
Query: 220 ---------DREHINKYNLTIIATDK---GNPPRTATAFLIIHVNDVNDHEPVFEKSEYS 267
D E +Y L I + P T+TA + + V DVN+ P F +
Sbjct: 286 GILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSR 344
Query: 268 AVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT----- 322
+SE G + + A D D ++ Y F+ + +W +N +G++T
Sbjct: 345 VDVSEDLSRGEKIISLVAQDPDKQQIQKLSY-FIGNDPARWLTVNKDNGIVTGNGNLDRE 403
Query: 323 ---------------RDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANT 367
D G + L + +LD ND P + V +
Sbjct: 404 SEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPE---- 459
Query: 368 LVATLTASDHDQ----------------------DSITGQLTVKTKLDRETITDYELKVI 405
LT SD D G + + + DY + V+
Sbjct: 460 -PQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVL 518
Query: 406 AKDHGTPPQSSTATVFLFIEDVNDNNPVF 434
D PQ + +
Sbjct: 519 LSDAQNNPQLTVVNA--TVCSCEGKAIKC 545
Score = 264 bits (678), Expect = 2e-77
Identities = 90/366 (24%), Positives = 149/366 (40%), Gaps = 36/366 (9%)
Query: 820 KPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALS------NAKGDFEIDS 873
++ S E P + ++ + R ++ ++++ +G F I+
Sbjct: 5 HHDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEW 61
Query: 874 RNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFL 933
G++ R DRE + L + +++ +++ + + DQNDN P+F
Sbjct: 62 ETGWMLVTRPLDREE------YDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFT 115
Query: 934 RTPYKVQISEGASIGTQVFRVSTMDADE---GLNGDVYYKIISGN----DDEHFSIDEAT 986
+ ++ + EG GTQV VS D D+ LNG + Y I+ + F+I+ T
Sbjct: 116 QDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRET 175
Query: 987 GQI-TISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTES 1045
G I I LDRE ++ L V A D LS I + D NDNAP+F
Sbjct: 176 GVISLIGTGLDREKFPEYTLTVQATDLEG---AGLSVEGKAIIQITDANDNAPIFDPKTY 232
Query: 1046 KISVYENTTVNTQLFHFQATDSDI-GVNNEVLFSIGSGNKRDTFHM--DPVT--GILYLH 1100
V EN + ++ TD D+ G N+ F++ DP + GIL
Sbjct: 233 TALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTA 291
Query: 1101 KKLDYEEINSYVLNVTASDG---GTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIREN 1157
K LD+E YVL +T + P ++ T+ VED N+ P F + E+
Sbjct: 292 KGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSED 350
Query: 1158 IPINTI 1163
+
Sbjct: 351 LSRGEK 356
Score = 256 bits (657), Expect = 2e-74
Identities = 94/488 (19%), Positives = 158/488 (32%), Gaps = 107/488 (21%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE +KY L+ A + P + I+V D ND+ P F + + + E G+
Sbjct: 73 DREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQ 132
Query: 280 VAGITATDED---TGVNAQIFYAFVSGNEHQW----FEINPTSGLITTKT---------- 322
V ++ATDED +N + Y+ + + + F IN +G+I+
Sbjct: 133 VMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE 192
Query: 323 -------RDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTAS 375
D + + I D ND P F + EN V L+ +
Sbjct: 193 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVT 251
Query: 376 DHDQ--------------------------DSITGQLTVKTKLDRETITDYELKVIAKD- 408
D D +S G LT LD E Y L++ ++
Sbjct: 252 DLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENA 311
Query: 409 --HGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKN 466
P +STATV + +EDVN+ P F P+ + ED G I+ + A D D +
Sbjct: 312 EPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQI 370
Query: 467 AQVTYSIESGSE-----------------------------------AVDGGNRKATENA 491
+++Y I + D G T
Sbjct: 371 QKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG 430
Query: 492 IVEIIKNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYA 551
+ + + + NG S Q + + I ++D+ K +
Sbjct: 431 TLIL-------HVLDVNDNGPVPSPRVFTMCDQNP---EPQVLTISDADIPPNTYPYKVS 480
Query: 552 IVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSR----LSYGKTFVNITLLD 607
+ +G D G + + + ++ Y++ V T VN T+
Sbjct: 481 LSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL---TVVNATVCS 537
Query: 608 LNDNAPIF 615
A
Sbjct: 538 CEGKAIKC 545
Score = 252 bits (646), Expect = 5e-73
Identities = 96/495 (19%), Positives = 163/495 (32%), Gaps = 128/495 (25%)
Query: 91 YSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS------ETERKFT--------NCQ 136
VS NE +++Q+ +++ K+ Y ++ + F
Sbjct: 13 IKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVT 69
Query: 137 Q-----QRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTA 191
+ + V + A + +T+N++D ND+ P F
Sbjct: 70 RPLDREEYD------KYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPK-----FTQDV 118
Query: 192 GFATVDENAINGSVVAAVSVVDPDEGLN-------------------------------- 219
+V E G+ V AVS D D+ ++
Sbjct: 119 FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVI 178
Query: 220 -------DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSE 272
DRE +Y LT+ ATD + II + D ND+ P+F+ Y+A++ E
Sbjct: 179 SLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 238
Query: 273 LAPAGSYVAGITATDEDT-GVNAQIFYAFVSGNEHQWFEINPT----SGLITTK------ 321
G V ++ TD D G A + NE +F I G++TT
Sbjct: 239 NEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE 297
Query: 322 -------------TRDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTL 368
+ + V++ D N+ P F V + + E+ +
Sbjct: 298 LRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEK 356
Query: 369 VATLTASDHDQ--------------------DSITGQLTVKTKLDRET----ITDYELKV 404
+ +L A D D+ + G +T LDRE+ Y + +
Sbjct: 357 IISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIM 416
Query: 405 IAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCG 464
+ D G + T T+ L + DVNDN PV P + ++ D D
Sbjct: 417 LVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNP-----EPQVLTISDADIP 471
Query: 465 KNAQV-TYSIESGSE 478
N S+ GS+
Sbjct: 472 PNTYPYKVSLSHGSD 486
Score = 250 bits (640), Expect = 3e-72
Identities = 101/564 (17%), Positives = 180/564 (31%), Gaps = 119/564 (21%)
Query: 255 NDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQW----FE 310
+ H + +E P + + +++Y+ F
Sbjct: 2 HHHHHDWVIPPIKVSENERGPFPKRLV---QIKSNKDRFNKVYYSITGQGADNPPQGVFR 58
Query: 311 INPTSGLITTKTR----------------DGGPNPKWAYTQLKVSILDENDEKPQFTQNV 354
I +G + +P ++ ++++D+ND +P+FTQ+V
Sbjct: 59 IEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDV 118
Query: 355 LNISLLENSAANTLVATLTASDHDQ----------------------------DSITGQL 386
S+ E T V ++A+D D + TG +
Sbjct: 119 FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVI 178
Query: 387 TVKTK-LDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPE 445
++ LDRE +Y L V A D S + I D NDN P+F P Y +PE
Sbjct: 179 SLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 238
Query: 446 DTQVGVSIVQVSAYDLD-CGKNAQVTYSIESGSE-------------------------- 478
+ +G + ++S DLD G A +E
Sbjct: 239 NE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE 297
Query: 479 ----------AVDGGNRKA---TENAIVEIIKNSMVETLEFEHYNGYTFSILEDHDKMQE 525
+ T A V + + E F + ED +
Sbjct: 298 LRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVP-AVSRVDVSEDLSR--- 353
Query: 526 NLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQ---- 581
G + + ++ D + I ++ Y I DP + +N G + LDRE +
Sbjct: 354 --GEKIISLVAQDPD-KQQIQKLSYFIG-NDPARWLTVNKDNGIVTGNGNLDRESEYVKN 409
Query: 582 SIYNLVVSAR----SRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVA 637
+ Y +++ S + G + + +LD+NDN P+ + + V
Sbjct: 410 NTYTVIMLVTDDGVSVGT-GTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VL 463
Query: 638 RARDRDSGVNSRIF-YSLSSNPDDQFKIV-ETNGVIYLNKPIQSPPGSTLTIEIVASDSG 695
D D N+ + SLS D +K ++ G L P Q +I ++ SD+
Sbjct: 464 TISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQ 523
Query: 696 KQSLSSKHSVNVYIQDVNDHTPVF 719
+ VN +
Sbjct: 524 NNPQLT--VVNATVCSCEGKAIKC 545
Score = 138 bits (350), Expect = 3e-34
Identities = 47/291 (16%), Positives = 87/291 (29%), Gaps = 76/291 (26%)
Query: 26 NPSGETSYLYLQTTGKLDRETVDFYQLNISARDG---GTPTRYGYLQVNVTILDVNDNPP 82
E++ L T LD E Y L I+ + P V VT+ DVN+ P
Sbjct: 278 TTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-AP 336
Query: 83 IFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSE--------------- 127
F +V V ++E + G K++ ++A D D+ K++Y++
Sbjct: 337 FFVPAV--SRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIV 394
Query: 128 -TERKF---TNCQQQRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIK 183
+ + + + D G G + +++LD ND+ PV
Sbjct: 395 TGNGNLDRESEYVKN-------NTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPS 447
Query: 184 FRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLN------------------------ 219
R F +++ D D N
Sbjct: 448 PRVFT----------MCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKG 497
Query: 220 --------DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFE 262
+ Y++ ++ +D N P+ + V +
Sbjct: 498 TSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTV--VNATVCSCEGKAIKCQ 546
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 323 bits (831), Expect = e-100
Identities = 96/435 (22%), Positives = 168/435 (38%), Gaps = 49/435 (11%)
Query: 730 ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD---------GFMYVRNS 780
+ R ++D G + + + ++ F I D G + V+
Sbjct: 6 RAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKK 62
Query: 781 LDRETR------DYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVF--SV 832
D E D++ + + + + V+I + D ND P F N V
Sbjct: 63 WDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVV 122
Query: 833 MENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQT 892
N PP++ V L A D D N G FE+D R+G ++T + +
Sbjct: 123 QLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL---- 178
Query: 893 TGQNFISLEATVSDNGSP----RLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIG 948
L D R + + + I +PQF Y+ +I E
Sbjct: 179 --DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKD 235
Query: 949 TQVFRVSTMDADEGLNGDVYYKII-SGNDDEHFSIDEATGQITISKLLDRETVSK---FN 1004
+ + + + ++ Y + G F+I +G + ++K LD E + + ++
Sbjct: 236 SDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYS 292
Query: 1005 LKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTE-SKISVYENTTVNTQLFHFQ 1063
L V A + S S++ +TI V D NDNAP F + +V E+ + T + +
Sbjct: 293 LIVTATED----SGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVK 348
Query: 1064 ATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINS-YVLNVTASDGGT 1122
A DSD G N E+ + + + F +D GI+ +K+LD + N+ Y VTA D G
Sbjct: 349 AMDSDSGSNAEIEYLVSDDH----FAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGE 403
Query: 1123 PRLSTIFMFTINVED 1137
P S + + ++
Sbjct: 404 PPKSGVATVRVYTKN 418
Score = 306 bits (787), Expect = 4e-94
Identities = 95/436 (21%), Positives = 158/436 (36%), Gaps = 46/436 (10%)
Query: 624 IPENAAVGQEIYVARARDRDSGVNSRIFYSLSS---------NPDDQFKIVETNGVIYLN 674
+ + D + + L D+ + VETNG + +
Sbjct: 4 VTRAVRPT---KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 675 KPI------QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMS--SYET 726
K I + + V + ++DVND P F +
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120
Query: 727 SLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRET 785
+ + P N F L A+D D +N + Y I+ +F + G + R + +
Sbjct: 121 VVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL 178
Query: 786 RDYYALTVLAEDHGKYP---RSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFV 842
Y L V AED R S P I P+F S+ + EN DS +
Sbjct: 179 DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDI 238
Query: 843 GKLIATDKDVGRNAELSFALS---NAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFIS 899
+ A + E+ + L G F I +G +K + D E+L Q +
Sbjct: 239 ISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYS--- 292
Query: 900 LEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKV-QISEGASIGTQVFRVSTMD 958
L T ++ S V + + +TD NDN+P+F Y+ + E +GT + RV MD
Sbjct: 293 LIVTATE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMD 351
Query: 959 ADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV-SKFNLKVLARDAATVVS 1017
+D G N ++ Y + HF++D G I +K LD + + + V A+D
Sbjct: 352 SDSGSNAEIEYLVSDD----HFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEP-- 404
Query: 1018 NQLSSTTMVTIDVLDE 1033
S V + ++
Sbjct: 405 -PKSGVATVRVYTKNK 419
Score = 279 bits (716), Expect = 4e-84
Identities = 79/349 (22%), Positives = 137/349 (39%), Gaps = 28/349 (8%)
Query: 832 VMENLPPDSFVGKLIATDKDVGRNAELSFALS----------NAKGDFEIDSRNGFIKTM 881
V + P ++ T+ D + F L + NG ++
Sbjct: 4 VTRAVRP---TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 882 RSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTP--YKV 939
+ +D E L +F + + N + D +V + + D ND P F+ P +
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120
Query: 940 QISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRET 999
+ A T VF + D D N ++Y I+ F +DE +G + +
Sbjct: 121 VVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL 178
Query: 1000 VSKFNLKVLARDAAT-VVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQ 1058
++ L V A D V + ST + ++ AP F + + EN ++
Sbjct: 179 DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSD 237
Query: 1059 LFHFQATDSDIGVNNEVLFSI-GSGNKRDTFHMDPVTGILYLHKKLDYE---EINSYVLN 1114
+ +A + E+ +++ G TF++ P +GI+ L K+LD+E + + Y L
Sbjct: 238 IISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLI 294
Query: 1115 VTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTA-IVRQIRENIPINT 1162
VTA++ ST TI V D NDN P F + E+IP+ T
Sbjct: 295 VTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGT 342
Score = 270 bits (693), Expect = 5e-81
Identities = 90/409 (22%), Positives = 157/409 (38%), Gaps = 45/409 (11%)
Query: 547 QIKYAIVYGDPKKKFEIND--------RTGEIITAAKLDREEQS------IYNLVVSAR- 591
+ + + K+ F+I D G + K D EE + ++ +
Sbjct: 26 KSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGH 85
Query: 592 ---SRLSYGKTFVNITLLDLNDNAPIFNRDKD--EITIPENAAVGQEIYVARARDRDSGV 646
+ + V I + D+ND P F + + NA ++ +ARD D+
Sbjct: 86 NAGIKYT-DNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 144
Query: 647 NSRIFYSLSS-NPDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSV 705
N I Y + +F++ E +GV+ + + A D + +
Sbjct: 145 N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQS 202
Query: 706 NVYIQ---DVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSII-EG 761
+ P F M SYE + E+ ++ + AK + + Y++ +G
Sbjct: 203 TPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQG 259
Query: 762 NGEDKFGIFPD-GFMYVRNSLDRETR---DYYALTVLAEDHGKYPRSSSVPVVIHIIDEN 817
G F I P G + + LD E Y+L V A + S+SV + I + D N
Sbjct: 260 QGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVN 318
Query: 818 DNKPEFSNSSF-VFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSRNG 876
DN P+F + +V E++P + + ++ A D D G NAE+ + +S+ F +DS NG
Sbjct: 319 DNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD--DHFAVDS-NG 375
Query: 877 FIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQ 925
I + D +N + T D G P V VY ++
Sbjct: 376 IIVNNKQLDADNN-----NAYYEFIVTAKDKGEPPKSGVATVRVYTKNK 419
Score = 252 bits (645), Expect = 2e-74
Identities = 82/429 (19%), Positives = 131/429 (30%), Gaps = 106/429 (24%)
Query: 92 SVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSETERKFTNCQQQRPGGSCPKSCVFT 151
S + +V P ++ T+ D K + L + K
Sbjct: 1 SRRVTRAVRPTK---RIEFTEADGDTEGKSVFQLEKETDKE------------------- 38
Query: 152 VFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSV 211
F +P T V + D+
Sbjct: 39 TFKIRDDNPWVTVETNGAVRVKKKWDY--------------------------------- 65
Query: 212 VDPDEGLNDREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSE--YSAV 269
E L + I+ + + T +II V DVND P F AV
Sbjct: 66 ----EELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAV 121
Query: 270 LSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT------- 322
+ AP + V + A D DT N I Y V FE++ SG++ T+
Sbjct: 122 VQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD 179
Query: 323 ---------RDGGPNPKWAYTQLKVSI---LDENDEKPQFTQNVLNISLLENSAANTLVA 370
D Q + PQF + EN ++ +
Sbjct: 180 MEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDII 239
Query: 371 TLTASDHDQ-------------------DSITGQLTVKTKLDRETITD---YELKVIAKD 408
++ A +G + + +LD E + Y L V A +
Sbjct: 240 SIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE 299
Query: 409 HGTPPQSSTATVFLFIEDVNDNNPVFYPSQY-FKQIPEDTQVGVSIVQVSAYDLDCGKNA 467
+ S++ + + + DVNDN P F Y + ED +G SI++V A D D G NA
Sbjct: 300 -DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNA 358
Query: 468 QVTYSIESG 476
++ Y +
Sbjct: 359 EIEYLVSDD 367
Score = 223 bits (571), Expect = 2e-64
Identities = 77/405 (19%), Positives = 128/405 (31%), Gaps = 102/405 (25%)
Query: 15 TLQNSKAKVTANPSGETSYLYLQTTGKLDRE------TVDFYQLNISARDGGTPTRYGYL 68
+++ VT +G ++ K D E T+DF+ + +
Sbjct: 41 KIRDDNPWVTVETNGA-----VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQ 95
Query: 69 QVNVTILDVNDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSET 128
+V + + DVND PP F + + + P T V + A D D N T
Sbjct: 96 RVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRT 155
Query: 129 ERKFT-NCQQQRPGGSCPKSCV----------------FTVFARDHGSPRQDGRTYVTVN 171
+F + +S V V A D D R T
Sbjct: 156 GGRFEVD----------ERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPE 205
Query: 172 L---LDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLN--------- 219
+ P F + A + EN S + ++ +
Sbjct: 206 ERLSIVGGKRAPQ-----FYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQ 260
Query: 220 --------------------DRE---HINKYNLTIIATDKGNPPRTATAFLIIHVNDVND 256
D E + Y+L + AT+ + + + L I V DVND
Sbjct: 261 GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVND 319
Query: 257 HEPVFEKSEYSA-VLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTS 315
+ P FE +Y A + E P G+ + + A D D+G NA+I Y + F ++
Sbjct: 320 NAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH----FAVDSN- 374
Query: 316 GLITTKT-----------------RDGGPNPKWAYTQLKVSILDE 343
G+I +D G PK ++V ++
Sbjct: 375 GIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKNK 419
Score = 196 bits (501), Expect = 5e-55
Identities = 83/407 (20%), Positives = 142/407 (34%), Gaps = 74/407 (18%)
Query: 360 LENSAANTLVATLTASDHDQDSITGQLTVKTKLDRETITD------YELKVIAKDHGTPP 413
LE + G + VK K D E + + + +
Sbjct: 31 LEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIK 90
Query: 414 QSSTATVFLFIEDVNDNNPVFY--PSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTY 471
+ V + ++DVND P F P + + + + A D D N + Y
Sbjct: 91 YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHY 148
Query: 472 SIESGS--------------------------------EAVDGGNR------KATENAIV 493
I +A D + ++T +
Sbjct: 149 FIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERL 208
Query: 494 EIIKNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIV 553
I+ +F Y I E+ D+ IK ++ +I+Y +
Sbjct: 209 SIVGGK--RAPQFYM-PSYEAEIPENQK-----KDSDIISIKAKSFAD----REIRYTLK 256
Query: 554 -YGDPKKKFEINDRTGEIITAAKLDRE---EQSIYNLVVSAR---SRLSYGKTFVNITLL 606
G F I +G + A +LD E + +Y+L+V+A S + I +
Sbjct: 257 AQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFS-TSVDLTIRVT 315
Query: 607 DLNDNAPIFNRDKDEI-TIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIV 665
D+NDNAP F + + E+ +G I +A D DSG N+ I Y +S DD F +
Sbjct: 316 DVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVS---DDHFAV- 371
Query: 666 ETNGVIYLNKPIQS-PPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
++NG+I NK + + + + A D G+ S +V VY ++
Sbjct: 372 DSNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
Score = 195 bits (497), Expect = 2e-54
Identities = 48/241 (19%), Positives = 83/241 (34%), Gaps = 23/241 (9%)
Query: 940 QISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSID--------EATGQITI 991
+++ R+ +AD G +++ D E F I E G + +
Sbjct: 3 RVTRAVRPTK---RIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV 59
Query: 992 SKLLDRETVS---KFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTES--K 1046
K D E + + V+ + + + V I V D ND P F+ +
Sbjct: 60 KKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQ 119
Query: 1047 ISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYE 1106
V N NT +F QA D D N + + I F +D +G++ ++
Sbjct: 120 AVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQ 177
Query: 1107 EINSYVLNVTASDGGTP----RLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
YVL V A D R + +++ P F + +I EN ++
Sbjct: 178 LDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDS 236
Query: 1163 I 1163
Sbjct: 237 D 237
Score = 40.4 bits (95), Expect = 0.003
Identities = 4/60 (6%), Positives = 18/60 (30%), Gaps = 7/60 (11%)
Query: 441 KQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE----AVDGGNRKATENAIVEII 496
+++ + ++ + D + + +E ++ + N T +
Sbjct: 2 RRVTRAVRPTK---RIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVR 58
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB:
3ubg_A
Length = 316
Score = 267 bits (684), Expect = 4e-81
Identities = 71/317 (22%), Positives = 125/317 (39%), Gaps = 24/317 (7%)
Query: 842 VGKLIATDKDVGRNAELSFALS----------NAKGDFEIDSRNGFIKTMRSFDRENLLQ 891
++ T+ D + F L + NG ++ + +D E L
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 892 TTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTP--YKVQISEGASIGT 949
+F + + N + D +V + + D ND P F+ P + + A T
Sbjct: 66 EKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNT 125
Query: 950 QVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLA 1009
VF + D D N ++Y I+ F +DE +G + + ++ L V A
Sbjct: 126 PVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKA 183
Query: 1010 RDAAT-VVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSD 1068
D V + ST + ++ AP F + + EN ++ + +A
Sbjct: 184 EDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA 242
Query: 1069 IGVNNEVLFSI-GSGNKRDTFHMDPVTGILYLHKKLDYEEINS---YVLNVTASDGGTPR 1124
+ E+ +++ G TF++ P +GI+ L K+LD+E++ Y L VTA++
Sbjct: 243 ---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GG 298
Query: 1125 LSTIFMFTINVEDCNDN 1141
ST TI V D NDN
Sbjct: 299 FSTSVDLTIRVTDVNDN 315
Score = 250 bits (640), Expect = 5e-75
Identities = 68/320 (21%), Positives = 119/320 (37%), Gaps = 39/320 (12%)
Query: 743 AKDSDLGNNGFVSYSIIEGNGEDKFGIFPD---------GFMYVRNSLDRE------TRD 787
++D G + + + ++ F I D G + V+ D E T D
Sbjct: 11 FTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTID 70
Query: 788 YYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVF--SVMENLPPDSFVGKL 845
++ + + + + V+I + D ND P F N V N PP++ V L
Sbjct: 71 FWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTL 130
Query: 846 IATDKDVGRNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVS 905
A D D N G FE+D R+G ++T + + L
Sbjct: 131 QARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL------DMEYVLYVKAE 184
Query: 906 DNGSP----RLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADE 961
D R + + + I +PQF Y+ +I E + + +
Sbjct: 185 DQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA- 242
Query: 962 GLNGDVYYKII-SGNDDEHFSIDEATGQITISKLLDRETVSK---FNLKVLARDAATVVS 1017
+ ++ Y + G F+I +G + ++K LD E + + ++L V A + S
Sbjct: 243 --DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATED----S 296
Query: 1018 NQLSSTTMVTIDVLDENDNA 1037
S++ +TI V D NDNA
Sbjct: 297 GGFSTSVDLTIRVTDVNDNA 316
Score = 235 bits (602), Expect = 7e-70
Identities = 64/324 (19%), Positives = 111/324 (34%), Gaps = 35/324 (10%)
Query: 631 GQEIYVARARDRDSGVNSRIFYSLSS---------NPDDQFKIVETNGVIYLNKPI---- 677
+ + D + + L D+ + VETNG + + K
Sbjct: 3 VRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEE 62
Query: 678 --QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSS--YETSLLESTP 733
I + + V + ++DVND P F + + + P
Sbjct: 63 LGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAP 122
Query: 734 VNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRETRDYYALT 792
N F L A+D D +N + Y I+ +F + G + R + + Y L
Sbjct: 123 PNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLY 180
Query: 793 VLAEDHGKYPR----SSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIAT 848
V AED S+ + I+ P+F S+ + EN DS + + A
Sbjct: 181 VKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAK 239
Query: 849 DKDVGRNAELSFAL---SNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVS 905
+ E+ + L G F I +G +K + D E + SL T +
Sbjct: 240 SFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFE---DLRQPHVYSLIVTAT 293
Query: 906 DNGSPRLKDKVKVDVYITDQNDNS 929
++ V + + +TD NDN+
Sbjct: 294 EDS-GGFSTSVDLTIRVTDVNDNA 316
Score = 197 bits (503), Expect = 2e-56
Identities = 61/301 (20%), Positives = 108/301 (35%), Gaps = 34/301 (11%)
Query: 547 QIKYAIVYGDPKKKFEIN--------DRTGEIITAAKLDREEQS------IYNLVVSARS 592
+ + + K+ F+I + G + K D EE + ++ +
Sbjct: 21 KSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGH 80
Query: 593 RLS---YGKTFVNITLLDLNDNAPIFNRDKD--EITIPENAAVGQEIYVARARDRDSGVN 647
V I + D+ND P F + + NA ++ +ARD D+ N
Sbjct: 81 NAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN 140
Query: 648 SRIFYSLSSNPDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSG----KQSLSSKH 703
+ + +F++ E +GV+ + + A D + S
Sbjct: 141 IHY-FIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTP 199
Query: 704 SVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSII-EGN 762
+ I P F M SYE + E+ ++ + AK + + Y++ +G
Sbjct: 200 EERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQ 255
Query: 763 GEDKFGIFPD-GFMYVRNSLDRETR---DYYALTVLAEDHGKYPRSSSVPVVIHIIDEND 818
G F I P G + + LD E Y+L V A + S+SV + I + D ND
Sbjct: 256 GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVND 314
Query: 819 N 819
N
Sbjct: 315 N 315
Score = 193 bits (492), Expect = 6e-55
Identities = 49/235 (20%), Positives = 81/235 (34%), Gaps = 20/235 (8%)
Query: 946 SIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSI--------DEATGQITISKLLDR 997
S R+ +AD G +++ D E F I E G + + K D
Sbjct: 1 SAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDY 60
Query: 998 ETV---SKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTES--KISVYEN 1052
E + + V+ + + + V I V D ND P F+ + V N
Sbjct: 61 EELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLN 120
Query: 1053 TTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYV 1112
NT +F QA D D N + + I F +D +G++ ++ YV
Sbjct: 121 APPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYV 178
Query: 1113 LNVTASDGGTP----RLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINTI 1163
L V A D R + +++ P F + +I EN ++
Sbjct: 179 LYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSD 232
Score = 184 bits (470), Expect = 5e-52
Identities = 53/259 (20%), Positives = 87/259 (33%), Gaps = 48/259 (18%)
Query: 216 EGLNDREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSE--YSAVLSEL 273
E L + I+ + + T +II V DVND P F AV+
Sbjct: 61 EELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLN 120
Query: 274 APAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT----------- 322
AP + V + A D DT N Y V FE++ SG++ T+
Sbjct: 121 APPNTPVFTLQARDPDTDHNIH--YFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYV 178
Query: 323 -----RDGGPNPKWAY----TQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLT 373
D + ++SI+ PQF + EN ++ + ++
Sbjct: 179 LYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIK 237
Query: 374 ASDHDQ-------------------DSITGQLTVKTKLDRETITD---YELKVIAKDHGT 411
A +G + + +LD E + Y L V A +
Sbjct: 238 AKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS- 296
Query: 412 PPQSSTATVFLFIEDVNDN 430
S++ + + + DVNDN
Sbjct: 297 GGFSTSVDLTIRVTDVNDN 315
Score = 171 bits (434), Expect = 3e-47
Identities = 49/321 (15%), Positives = 76/321 (23%), Gaps = 84/321 (26%)
Query: 101 PGTKVLQVIATDNDQGDNAKITYYLSETERK--FTNCQQQ-------------------- 138
++ T+ D K + L + K F
Sbjct: 2 AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61
Query: 139 -RPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVD 197
V + + V + + D ND P R P A V
Sbjct: 62 ELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQ---AVVQ 118
Query: 198 ENAINGSVVAAVSVVDPDEGLN-----------------------------DREHINKYN 228
NA + V + DPD N + +Y
Sbjct: 119 LNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYV 178
Query: 229 LTIIATDKGNPPR----TATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGIT 284
L + A D+ +T + + P F Y A + E S + I
Sbjct: 179 LYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIK 237
Query: 285 ATDEDTGVNAQIFYAFV-SGNEHQWFEINPTSGLITTKT-------------------RD 324
A + +I Y G F I PTSG++ +
Sbjct: 238 AKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE 294
Query: 325 GGPNPKWAYTQLKVSILDEND 345
L + + D ND
Sbjct: 295 DSG-GFSTSVDLTIRVTDVND 314
Score = 166 bits (421), Expect = 2e-45
Identities = 44/254 (17%), Positives = 79/254 (31%), Gaps = 59/254 (23%)
Query: 280 VAGITATDEDTGVNAQIFYAFVSGNEHQWFEIN--------PTSGLITTKTR-------- 323
I T+ D + + + + F+I T+G + K +
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 324 --------------DGGPNPKWAYTQLKVSILDENDEKPQFTQNV--LNISLLENSAANT 367
++ + + D NDE P F + + N+ NT
Sbjct: 66 EKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNT 125
Query: 368 LVATLTASDHDQ-------------------DSITGQLTVKTKLDRETITDYELKVIAKD 408
V TL A D D D +G + + + +Y L V A+D
Sbjct: 126 PVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAED 185
Query: 409 HGTPPQ----SSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCG 464
ST L I P FY Y +IPE+ + I+ + A
Sbjct: 186 QNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA-- 242
Query: 465 KNAQVTYSIESGSE 478
+ ++ Y++++ +
Sbjct: 243 -DREIRYTLKAQGQ 255
Score = 152 bits (386), Expect = 7e-41
Identities = 49/278 (17%), Positives = 81/278 (29%), Gaps = 70/278 (25%)
Query: 36 LQTTGKLDRE------TVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVS 89
++ K D E T+DF+ + + +V + + DVND PP F +
Sbjct: 52 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPL 111
Query: 90 DYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSETERKFT--------------NC 135
+ + P T V + A D D N T +F
Sbjct: 112 PMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLF 171
Query: 136 QQQRPGGSCPKSCVFTVFARDHGSPRQDGR----TYVTVNLLDANDHDPVIKFRYFPSTA 191
Q V V A D D R ++++ P F +
Sbjct: 172 QLDM-------EYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQ-----FYMPS 218
Query: 192 GFATVDENAINGSVVAAVSVVDPDEGLN-----------------------------DRE 222
A + EN S + ++ + D E
Sbjct: 219 YEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFE 278
Query: 223 ---HINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDH 257
+ Y+L + AT+ + + + L I V DVND+
Sbjct: 279 DLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDN 315
Score = 149 bits (379), Expect = 6e-40
Identities = 52/320 (16%), Positives = 102/320 (31%), Gaps = 61/320 (19%)
Query: 450 GVSIVQVSAYDLDCGKNAQVTYSIESGSEAVDGGNRKATENAIVE---IIKNSMVETLEF 506
++ + D + + +E ++ R VE ++ + ++
Sbjct: 3 VRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK--KKWDY 60
Query: 507 E---HYNGYTFSILEDHDKMQENLGR-DVGKIKIRNSD--------------MQATI--- 545
E F ++ + + D ++ I D MQA +
Sbjct: 61 EELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLN 120
Query: 546 ------------------DQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLV 587
I Y IV +FE+++R+G + T + Y L
Sbjct: 121 APPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLY 180
Query: 588 VSA-------RSRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARAR 640
V A R ++++ AP F E IPEN +I +A+
Sbjct: 181 VKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAK 239
Query: 641 DRDSGVNSRIFYSL--SSNPDDQFKIVETNGVIYLNKPI---QSPPGSTLTIEIVASDSG 695
+ I Y+L F I T+G++ L K + ++ + A++
Sbjct: 240 SFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS 296
Query: 696 KQSLSSKHSVNVYIQDVNDH 715
S+ + + + DVND+
Sbjct: 297 -GGFSTSVDLTIRVTDVNDN 315
Score = 142 bits (359), Expect = 3e-37
Identities = 53/284 (18%), Positives = 88/284 (30%), Gaps = 64/284 (22%)
Query: 380 DSITGQLTVKTKLDRE------TITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPV 433
G + VK K D E TI + + + + V + ++DVND P
Sbjct: 46 VETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPY 105
Query: 434 FY--PSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGS-------------- 477
F P + + + + A D D N + Y I
Sbjct: 106 FINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVV 163
Query: 478 ------------------EAVDGGN----RKATENAIVEIIKNSMVETLEFEHYNGYTFS 515
+A D R+ + +F Y
Sbjct: 164 RTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYM-PSYEAE 222
Query: 516 ILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVY-GDPKKKFEINDRTGEIITAA 574
I E+ D+ IK ++ +I+Y + G F I +G + A
Sbjct: 223 IPENQK-----KDSDIISIKAKSFAD----REIRYTLKAQGQGAGTFNIGPTSGIVKLAK 273
Query: 575 KLDREEQS---IYNLVVSAR---SRLSYGKTFVNITLLDLNDNA 612
+LD E+ +Y+L+V+A S + I + D+NDNA
Sbjct: 274 ELDFEDLRQPHVYSLIVTATEDSGGFS-TSVDLTIRVTDVNDNA 316
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 256 bits (656), Expect = 4e-77
Identities = 93/335 (27%), Positives = 152/335 (45%), Gaps = 34/335 (10%)
Query: 829 VFSVMENLPPDSFVGKLIATDKDVGRNAELSFALS--NAKGDFEIDSRNGFIKTMRSFDR 886
+F + E P+ + + TD D G + ++ + LS A F+I+ G I ++ DR
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDR 65
Query: 887 ENLLQTTGQNFISLEATVSD-NGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGA 945
E + +L A D + L+ + + + D NDN+P+FL PY + E +
Sbjct: 66 EE------KAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMS 119
Query: 946 SIGTQVFRVSTMDADE---GLNGDVYYKIISGNDDEHFSIDEATGQI-TISKLLDRETVS 1001
+GT V V+ DAD+ G + + Y I+ G +FSI+ T I T +DRE
Sbjct: 120 ILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP--YFSIEPETAIIKTALPNMDREAKE 177
Query: 1002 KFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTVNTQLFH 1061
++ + + A+D S LS TT +T+ + D NDN P F ++ SV E+ + T +
Sbjct: 178 EYLVVIQAKDMGGH-SGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGR 236
Query: 1062 FQATDSDIGVNNEVLFSIGSGNKRDTFHM----DPVTGILYLHKKLDYEEINSYVLNVTA 1117
+A D DIG N + + I G+ F + G++ L K LD+E SY L V A
Sbjct: 237 VKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEA 296
Query: 1118 SDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVR 1152
++ + F +TA V+
Sbjct: 297 ANIHIDPRFSS-------------RGPFKDTATVK 318
Score = 247 bits (633), Expect = 6e-74
Identities = 89/328 (27%), Positives = 128/328 (39%), Gaps = 22/328 (6%)
Query: 717 PVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFM 775
V+ + L E + + D D G+ + Y + F I G +
Sbjct: 2 WVW---NQMFVLEEFSGPEPILVGRLHTDLDPGS-KKIKYILSGDGAGTIFQINDITGDI 57
Query: 776 YVRNSLDRETRDYYALTVLAEDH-GKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVME 834
+ LDRE + Y LT A D P +I + D NDN PEF N + +V E
Sbjct: 58 HAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPE 117
Query: 835 NLPPDSFVGKLIATDKD---VGRNAELSFALSNAKGDFEIDSRNGFIKTMRSF-DRENLL 890
+ V + ATD D G +A+L +++ + F I+ IKT DRE
Sbjct: 118 MSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDRE--- 174
Query: 891 QTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQ 950
+ + ++A S L + V +TD NDN P+F ++ Y + E +GT
Sbjct: 175 -AKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTA 233
Query: 951 VFRVSTMDADEGLNGDVYYKIISGNDDEHFSI----DEATGQITISKLLDRETVSKFNLK 1006
+ RV D D G N Y II G+ F I G I + K LD ET + LK
Sbjct: 234 IGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLK 293
Query: 1007 VLARDAAT----VVSNQLSSTTMVTIDV 1030
V A + T V I V
Sbjct: 294 VEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 214 bits (547), Expect = 3e-62
Identities = 91/324 (28%), Positives = 138/324 (42%), Gaps = 33/324 (10%)
Query: 514 FSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITA 573
+LE E G + + ++D+ +IKY + F+IND TG+I
Sbjct: 7 MFVLE------EFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAI 60
Query: 574 AKLDREEQSIYNLVVSARSRLSY----GKTFVNITLLDLNDNAPIFNRDKDEITIPENAA 629
+LDREE++ Y L A + + I + D+NDNAP F T+PE +
Sbjct: 61 KRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSI 120
Query: 630 VGQEIYVARARDRDS---GVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPI---QSPPGS 683
+G + A D D G ++++ YS+ F I +I P ++
Sbjct: 121 LGTSVTNVTATDADDPVYGNSAKLVYSILEG-QPYFSIEPETAIIKTALPNMDREAKEEY 179
Query: 684 TLTIEIVASDSGKQS--LSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFEL 741
+ I+ A D G S LS ++ V + DVND+ P F S Y S+ E + +
Sbjct: 180 LVVIQ--AKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRV 237
Query: 742 VAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-----GFMYVRNSLDRETRDYYALTVLAE 796
A D D+G N SY II+G+G F I D G + +R LD ET+ Y L V A
Sbjct: 238 KANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAA 297
Query: 797 DHGKYPR-------SSSVPVVIHI 813
+ PR + V I +
Sbjct: 298 NIHIDPRFSSRGPFKDTATVKIVV 321
Score = 197 bits (502), Expect = 3e-56
Identities = 78/306 (25%), Positives = 116/306 (37%), Gaps = 61/306 (19%)
Query: 259 PVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLI 318
V+ VL E + + G TD D G + +I Y F+IN +G I
Sbjct: 2 WVWN---QMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDI 57
Query: 319 TTKTR-----------------DGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLE 361
R P ++ + + D ND P+F + ++ E
Sbjct: 58 HAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPE 117
Query: 362 NSAANTLVATLTASDHDQD----------SITGQL-------------TVKTKLDRETIT 398
S T V +TA+D D SI T +DRE
Sbjct: 118 MSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKE 177
Query: 399 DYELKVIAKDHG--TPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQV 456
+Y + + AKD G + S T T+ + + DVNDN P F S Y +PED +G +I +V
Sbjct: 178 EYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRV 237
Query: 457 SAYDLDCGKNAQVTYSIESGSEAVDGGNR------KATENAIVEIIKNSMVETLEFEHYN 510
A D D G+NAQ +Y I G DG ++ ++ + K L+FE
Sbjct: 238 KANDQDIGENAQSSYDIIDG----DGTALFEITSDAQAQDGVIRLRK-----PLDFETKK 288
Query: 511 GYTFSI 516
YT +
Sbjct: 289 SYTLKV 294
Score = 192 bits (490), Expect = 1e-54
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 11/233 (4%)
Query: 936 PYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLL 995
+ E + + D D G + + Y + F I++ TG I K L
Sbjct: 5 NQMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRL 63
Query: 996 DRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTV 1055
DRE +++ L A D T + L + I V D NDNAP F+ +V E + +
Sbjct: 64 DREEKAEYTLTAQAVDFET--NKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSIL 121
Query: 1056 NTQLFHFQATDSD---IGVNNEVLFSIGSGNKRDTFHMDPVTGILY-LHKKLDYEEINSY 1111
T + + ATD+D G + ++++SI G F ++P T I+ +D E Y
Sbjct: 122 GTSVTNVTATDADDPVYGNSAKLVYSILEGQ--PYFSIEPETAIIKTALPNMDREAKEEY 179
Query: 1112 VLNVTASDGG--TPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
++ + A D G + LS T+ + D NDNPP F + + E++ + T
Sbjct: 180 LVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGT 232
Score = 173 bits (440), Expect = 6e-48
Identities = 74/318 (23%), Positives = 117/318 (36%), Gaps = 87/318 (27%)
Query: 193 FATVDENAINGSVVAAVSVVDPDEG------------------LN------------DRE 222
++E + ++ D D G +N DRE
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE 66
Query: 223 HINKYNLTIIATD-KGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVA 281
+Y LT A D + N P + II V D+ND+ P F Y A + E++ G+ V
Sbjct: 67 EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVT 126
Query: 282 GITATDED---TGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT---------------- 322
+TATD D G +A++ Y+ + G + F I P + +I T
Sbjct: 127 NVTATDADDPVYGNSAKLVYSILEGQPY--FSIEPETAIIKTALPNMDREAKEEYLVVIQ 184
Query: 323 ---RDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQ 379
G T L V++ D ND P+F Q++ + S+ E+ T + + A+D D
Sbjct: 185 AKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDI 244
Query: 380 -------------------------DSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQ 414
+ G + ++ LD ET Y LKV A + P+
Sbjct: 245 GENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPR 304
Query: 415 -------SSTATVFLFIE 425
TATV + +E
Sbjct: 305 FSSRGPFKDTATVKIVVE 322
Score = 162 bits (413), Expect = 2e-44
Identities = 67/299 (22%), Positives = 103/299 (34%), Gaps = 87/299 (29%)
Query: 88 VSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS--------------------- 126
V + L E P ++ + TD D G + KI Y LS
Sbjct: 3 VWNQMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIK 61
Query: 127 ----ETERKFTNCQQQRPGGSCPKSCVFTVFARDH-GSPRQDGRTYVTVNLLDANDHDPV 181
E + ++T T A D + + + + + D ND+ P
Sbjct: 62 RLDREEKAEYT----------------LTAQAVDFETNKPLEPPSEFIIKVQDINDNAPE 105
Query: 182 IKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDE---GLN------------------- 219
+ ATV E +I G+ V V+ D D+ G +
Sbjct: 106 FLNGPY-----HATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPE 160
Query: 220 -----------DREHINKYNLTIIATDKGN--PPRTATAFLIIHVNDVNDHEPVFEKSEY 266
DRE +Y + I A D G + T L + + DVND+ P F +S Y
Sbjct: 161 TAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLY 220
Query: 267 SAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEI----NPTSGLITTK 321
+ E G+ + + A D+D G NAQ Y + G+ FEI G+I +
Sbjct: 221 HFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLR 279
Score = 142 bits (359), Expect = 3e-37
Identities = 65/282 (23%), Positives = 97/282 (34%), Gaps = 83/282 (29%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGT-PTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+ +LDRE Y L A D T + + + D+NDN P F + Y +
Sbjct: 57 IHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGP--YHAT 114
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYLSETERKFT-NCQQQRPGGSCPKSCVF 150
+ E + GT V V ATD D G++AK+ Y + E + F+ P++ +
Sbjct: 115 VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIE----------PETAII 164
Query: 151 -----------------TVFARDHG--SPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTA 191
+ A+D G S G T +TV L D ND+ P F +
Sbjct: 165 KTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPK-----FAQSL 219
Query: 192 GFATVDENAINGSVVAAVSVVDPDEGLN-------------------------------- 219
+V E+ + G+ + V D D G N
Sbjct: 220 YHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLR 279
Query: 220 ---DREHINKYNLTIIATDKGNPPR-------TATAFLIIHV 251
D E Y L + A + PR TA + I V
Sbjct: 280 KPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 33.0 bits (76), Expect = 0.51
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 22 KVTANPSGETSYLYLQTTGKLDRETVDFYQLNISARDGGTPTRYGYL-------QVNVTI 74
++T++ + + L+ LD ET Y L + A + R+ V + +
Sbjct: 264 EITSDAQAQDGVIRLRK--PLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 222 bits (569), Expect = 8e-67
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 14/220 (6%)
Query: 925 QNDNSPQFLRTPYK--VQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSI 982
Q + P F + + ISE +G+ V ++ D D N + + + F++
Sbjct: 1 QVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAV 57
Query: 983 DEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVK 1042
+ TG + + + LDRET S+F ++ D +Q T V I V D NDNAP F
Sbjct: 58 EPDTGVVWLRQPLDRETKSEFTVEFSVSD------HQGVITRKVNIQVGDVNDNAPTFHN 111
Query: 1043 TESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKK 1102
+ + ENT V T +F ATD D+G VL+S + F +D GI+ + ++
Sbjct: 112 QPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQE 169
Query: 1103 LDYEEINSYVLNVTASDGG-TPRLSTIFMFTINVEDCNDN 1141
LDYE +Y L V A+D T LST+ I + D D
Sbjct: 170 LDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 205 bits (525), Expect = 8e-61
Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 16/223 (7%)
Query: 816 ENDNKPEFSNSSF--VFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDS 873
+ + P F+N F + E+ P S V +L+A D D + A F ++
Sbjct: 1 QVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLV-FGVSGEEASRFFAVEP 59
Query: 874 RNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFL 933
G + + DRE ++ ++E +VSD+ KV++ + D NDN+P F
Sbjct: 60 DTGVVWLRQPLDRET------KSEFTVEFSVSDHQGV---ITRKVNIQVGDVNDNAPTFH 110
Query: 934 RTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISK 993
PY V+I E +GT +F V+ D D G G V Y + F+ID A G +T+ +
Sbjct: 111 NQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAIDSARGIVTVIQ 168
Query: 994 LLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDN 1036
LD E + L V A D + LS+ + I + D D
Sbjct: 169 ELDYEVTQAYQLTVNATDQDK--TRPLSTLANLAIIITDMQDM 209
Score = 192 bits (491), Expect = 4e-56
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 16/220 (7%)
Query: 713 NDHTPVFDMSSYETSLL--ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIF 770
+ P F ++T LL E TPV + +L+A+D D N + + + F +
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 771 PD-GFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFV 829
PD G +++R LDRET+ + + DH + V I + D NDN P F N +
Sbjct: 59 PDTGVVWLRQPLDRETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPYS 115
Query: 830 FSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENL 889
+ EN P + + + ATD D+G + ++ F IDS G + ++ D E
Sbjct: 116 VRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEV- 174
Query: 890 LQTTGQNFISLEATVSDNG-SPRLKDKVKVDVYITDQNDN 928
L +D + L + + ITD D
Sbjct: 175 -----TQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 177 bits (451), Expect = 9e-51
Identities = 65/216 (30%), Positives = 88/216 (40%), Gaps = 13/216 (6%)
Query: 609 NDNAPIFNRD--KDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSS-NPDDQFKIV 665
+ P F + I E+ VG + ARD D N + + +S F +
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 666 ETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYE 725
GV++L +P+ S T+E SD VN+ + DVND+ P F Y
Sbjct: 59 PDTGVVWLRQPLDRETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPYS 115
Query: 726 TSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRE 784
+ E+TPV F + A D DLG G V YS + F I G + V LD E
Sbjct: 116 VRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYE 173
Query: 785 TRDYYALTVLAEDHGK-YPRSSSVPVVIHIIDENDN 819
Y LTV A D K P S+ + I I D D
Sbjct: 174 VTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 163 bits (414), Expect = 8e-46
Identities = 46/215 (21%), Positives = 77/215 (35%), Gaps = 44/215 (20%)
Query: 255 NDHEPVFEKSEYSAVL--SELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEIN 312
+ P F + L SE P GS V + A D D N + + ++F +
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 313 PTSGLITTKT----------------RDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLN 356
P +G++ + D ++ + + D ND P F +
Sbjct: 59 PDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVIT---RKVNIQVGDVNDNAPTFHNQPYS 115
Query: 357 ISLLENSAANTLVATLTASDHDQ-------------------DSITGQLTVKTKLDRETI 397
+ + EN+ T + + A+D D DS G +TV +LD E
Sbjct: 116 VRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVT 175
Query: 398 TDYELKVIAKDHGTPPQ-SSTATVFLFIEDVNDNN 431
Y+L V A D S+ A + + I D+ D +
Sbjct: 176 QAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD 210
Score = 152 bits (387), Expect = 3e-42
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 2/171 (1%)
Query: 546 DQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSRLSYGKTFVNITL 605
D + + + + + F + TG + LDRE +S + + S VNI +
Sbjct: 40 DPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQV 99
Query: 606 LDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIV 665
D+NDNAP F+ + IPEN VG I++ A D D G + YS F I
Sbjct: 100 GDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP-SPFFAID 158
Query: 666 ETNGVIYLNKPIQSPPGSTLTIEIVASDSGK-QSLSSKHSVNVYIQDVNDH 715
G++ + + + + + A+D K + LS+ ++ + I D+ D
Sbjct: 159 SARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 145 bits (369), Expect = 8e-40
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 23/156 (14%)
Query: 343 ENDEKPQFTQNVLNISLL--ENSAANTLVATLTASDHDQ------------------DSI 382
+ + P FT + + LL E++ + V L A D D +
Sbjct: 1 QVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPD 60
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQ 442
TG + ++ LDRET +++ ++ DH T V + + DVNDN P F+ Y +
Sbjct: 61 TGVVWLRQPLDRETKSEFTVEFSVSDHQGV---ITRKVNIQVGDVNDNAPTFHNQPYSVR 117
Query: 443 IPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE 478
IPE+T VG I V+A D D G V YS + S
Sbjct: 118 IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP 153
Score = 138 bits (349), Expect = 4e-37
Identities = 43/217 (19%), Positives = 66/217 (30%), Gaps = 57/217 (26%)
Query: 176 NDHDPVIKFRYF--PSTAGFATVDENAINGSVVAAVSVVDPDEGLN-------------- 219
+ P F + + E+ GS V + D D
Sbjct: 2 VNRLPF-----FTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFA 56
Query: 220 --------------DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSE 265
DRE +++ + +D T + I V DVND+ P F
Sbjct: 57 VEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVI---TRKVNIQVGDVNDNAPTFHNQP 113
Query: 266 YSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT--- 322
YS + E P G+ + + ATD D G + Y+F + F I+ G++T
Sbjct: 114 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF--FAIDSARGIVTVIQELD 171
Query: 323 -------------RDGG-PNPKWAYTQLKVSILDEND 345
D P L + I D D
Sbjct: 172 YEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208
Score = 133 bits (336), Expect = 2e-35
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 1033 ENDNAPMFVKT--ESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHM 1090
+ + P F ++ + + E+T V + + A D D N+ ++F + F +
Sbjct: 1 QVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAV 57
Query: 1091 DPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAI 1150
+P TG+++L + LD E + + + + SD + I V D NDN P+F N
Sbjct: 58 EPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKV---NIQVGDVNDNAPTFHNQPY 114
Query: 1151 VRQIRENIPINT 1162
+I EN P+ T
Sbjct: 115 SVRIPENTPVGT 126
Score = 127 bits (321), Expect = 2e-33
Identities = 45/235 (19%), Positives = 71/235 (30%), Gaps = 82/235 (34%)
Query: 78 NDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS----------- 126
+ P F + D + ++E G+ V Q++A D DN + + +S
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARD---MDNDPLVFGVSGEEASRFFAVE 58
Query: 127 --------------ETERKFTNCQQQRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNL 172
ET+ +FT DH V + +
Sbjct: 59 PDTGVVWLRQPLDRETKSEFT----------------VEFSVSDHQGV---ITRKVNIQV 99
Query: 173 LDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLN------------- 219
D ND+ P F + + EN G+ + V+ DPD G
Sbjct: 100 GDVNDNAPT-----FHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPF 154
Query: 220 ----------------DREHINKYNLTIIATDKGNPPR-TATAFLIIHVNDVNDH 257
D E Y LT+ ATD+ + A L I + D+ D
Sbjct: 155 FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 120 bits (302), Expect = 9e-31
Identities = 38/159 (23%), Positives = 55/159 (34%), Gaps = 27/159 (16%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
+ LDRET + + S D +VN+ + DVNDN P F YSV +
Sbjct: 64 VWLRQPLDRETKSEFTVEFSVSDHQGVIT---RKVNIQVGDVNDNAPTF--HNQPYSVRI 118
Query: 96 NESVLPGTKVLQVIATDNDQGDNAKITYYLSETERKFT--------------NCQQQRPG 141
E+ GT + V ATD D G + Y F + + +
Sbjct: 119 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQ-- 176
Query: 142 GSCPKSCVFTVFARDHGSPRQ-DGRTYVTVNLLDANDHD 179
+ TV A D R + + + D D D
Sbjct: 177 -----AYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD 210
Score = 53.8 bits (130), Expect = 5e-08
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 35 YLQTTGKLDRETVDFYQLNISARDGG-TPTRYGYLQVNVTILDVNDN 80
+ +LD E YQL ++A D T + + I D+ D
Sbjct: 163 IVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 195 bits (498), Expect = 5e-57
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 11/214 (5%)
Query: 936 PYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLL 995
I E + D D G +G++ Y + F ID+ +G I +K L
Sbjct: 6 NQFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTL 64
Query: 996 DRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTTV 1055
DRE +++ L A D T + L + + V D NDN P F+ +V E + V
Sbjct: 65 DREERAQYTLMAQAVDRDT--NRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNV 122
Query: 1056 NTQLFHFQATDSD---IGVNNEVLFSIGSGNKRDTFHMDPVTGILYL-HKKLDYEEINSY 1111
T + A+D+D G + ++++SI G F ++ TGI+ +D E Y
Sbjct: 123 GTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEAQTGIIRTALPNMDREAKEEY 180
Query: 1112 VLNVTASDGG--TPRLSTIFMFTINVEDCNDNPP 1143
+ + A D G LS TI + D +
Sbjct: 181 HVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 182 bits (464), Expect = 2e-52
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 17/217 (7%)
Query: 829 VFSVMENLPPDSFVGKLIATDKDVGRNAELSFALS--NAKGDFEIDSRNGFIKTMRSFDR 886
F + E PD + + +D D G + + + LS A F ID ++G I ++ DR
Sbjct: 8 FFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDR 66
Query: 887 ENLLQTTGQNFISLEATVSDNGSPR-LKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGA 945
E + +L A D + R L+ + V + D NDN P+FL Y + E +
Sbjct: 67 EE------RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERS 120
Query: 946 SIGTQVFRVSTMDADE---GLNGDVYYKIISGNDDEHFSIDEATGQI-TISKLLDRETVS 1001
++GT V +V+ DAD+ G + + Y I+ G +FS++ TG I T +DRE
Sbjct: 121 NVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP--YFSVEAQTGIIRTALPNMDREAKE 178
Query: 1002 KFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAP 1038
++++ + A+D + LS TT VTI + D+ +
Sbjct: 179 EYHVVIQAKDMGGHM-GGLSGTTKVTITLTDDYKDDD 214
Score = 169 bits (431), Expect = 5e-48
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 15/209 (7%)
Query: 730 ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRETRDY 788
E T + + D D G+ + Y + F I G ++ +LDRE R
Sbjct: 13 EYTGPDPVLVGRLHSDIDSGDGN-IKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQ 71
Query: 789 YALTVLAEDHGKY-PRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIA 847
Y L A D P ++ + D NDN PEF + + +V E + V ++ A
Sbjct: 72 YTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTA 131
Query: 848 TDKD---VGRNAELSFALSNAKGDFEIDSRNGFIKTM-RSFDRENLLQTTGQNFISLEAT 903
+D D G +A+L +++ + F ++++ G I+T + DRE + +
Sbjct: 132 SDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREA------KEEYHVVIQ 185
Query: 904 VSDNGS--PRLKDKVKVDVYITDQNDNSP 930
D G L KV + +TD +
Sbjct: 186 AKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 150 bits (380), Expect = 3e-41
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 12/210 (5%)
Query: 622 ITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQ-FKIVETNGVIYLNKPIQSP 680
I E + D DSG + I Y LS F I + +G I+ K +
Sbjct: 9 FVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDRE 67
Query: 681 PGSTLTIEIVASDSGK-QSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFF 739
+ T+ A D + L V +QD+ND+ P F Y ++ E + V
Sbjct: 68 ERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVI 127
Query: 740 ELVAKDSD---LGNNGFVSYSIIEGNGEDKFGIFPD-GFMYV-RNSLDRETRDYYALTVL 794
++ A D+D GN+ + YSI+EG F + G + ++DRE ++ Y + +
Sbjct: 128 QVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQ 185
Query: 795 AEDHGKY--PRSSSVPVVIHIIDENDNKPE 822
A+D G + S + V I + D+ + +
Sbjct: 186 AKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
Score = 139 bits (353), Expect = 1e-37
Identities = 48/209 (22%), Positives = 74/209 (35%), Gaps = 43/209 (20%)
Query: 266 YSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLI-TTKTRD 324
V+ E + G +D D+G + I Y F I+ SG I TKT D
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLD 65
Query: 325 ----------------GGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTL 368
P ++ V + D ND P+F + + ++ E S T
Sbjct: 66 REERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTS 125
Query: 369 VATLTASDHDQ----------------------DSITGQL-TVKTKLDRETITDYELKVI 405
V +TASD D ++ TG + T +DRE +Y + +
Sbjct: 126 VIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQ 185
Query: 406 AKDHG--TPPQSSTATVFLFIEDVNDNNP 432
AKD G S T V + + D ++
Sbjct: 186 AKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 137 bits (348), Expect = 6e-37
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 17/208 (8%)
Query: 523 MQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQS 582
++E G D + +SD+ + IKY + F I+D++G I LDREE++
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERA 70
Query: 583 IYNLVVSARSRLSY----GKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVAR 638
Y L+ A R + + + + D+NDN P F + +PE + VG +
Sbjct: 71 QYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVT 130
Query: 639 ARDRDS---GVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPI----QSPPGSTLTIEIVA 691
A D D G ++++ YS+ F + G+I P + I A
Sbjct: 131 ASDADDPTYGNSAKLVYSILEG-QPYFSVEAQTGIIRTALPNMDREAKE---EYHVVIQA 186
Query: 692 SDSGKQ--SLSSKHSVNVYIQDVNDHTP 717
D G LS V + + D
Sbjct: 187 KDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 136 bits (344), Expect = 2e-36
Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 96/284 (33%)
Query: 88 VSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSETERKFTNCQQQRPGGSCPKS 147
V + + E P ++ + +D D G + I Y LS G
Sbjct: 4 VWNQFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILS--------------GEG---- 44
Query: 148 CVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDENAINGSVVA 207
T+F D + G + T L
Sbjct: 45 -AGTIFVID----DKSGNIHATKTL----------------------------------- 64
Query: 208 AVSVVDPDEGLNDREHINKYNLTIIATDKGNP-PRTATAFLIIHVNDVNDHEPVFEKSEY 266
DRE +Y L A D+ P + I+ V D+ND+ P F Y
Sbjct: 65 ------------DREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIY 112
Query: 267 SAVLSELAPAGSYVAGITATDED---TGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT- 322
A + E + G+ V +TA+D D G +A++ Y+ + G + F + +G+I T
Sbjct: 113 HANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPY--FSVEAQTGIIRTALP 170
Query: 323 ----------------RDGG--PNPKWAYTQLKVSILDENDEKP 348
+D G T++ +++ D+ +
Sbjct: 171 NMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 117 bits (295), Expect = 7e-30
Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 24/142 (16%)
Query: 361 ENSAANTLVATLTASDHDQ--------------------DSITGQLTVKTKLDRETITDY 400
E + + ++ SD D D +G + LDRE Y
Sbjct: 13 EYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQY 72
Query: 401 ELKVIAKDHGTP-PQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAY 459
L A D T P + + ++D+NDN P F Y +PE + VG S++QV+A
Sbjct: 73 TLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTAS 132
Query: 460 DLD---CGKNAQVTYSIESGSE 478
D D G +A++ YSI G
Sbjct: 133 DADDPTYGNSAKLVYSILEGQP 154
Score = 111 bits (281), Expect = 5e-28
Identities = 46/165 (27%), Positives = 64/165 (38%), Gaps = 28/165 (16%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPT-RYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+ T LDRE Y L A D T + V + D+NDNPP F H + Y +
Sbjct: 58 IHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEI--YHAN 115
Query: 95 LNESVLPGTKVLQVIATDND---QGDNAKITYYLSETERKF----------TNCQQ---- 137
+ E GT V+QV A+D D G++AK+ Y + E + F T
Sbjct: 116 VPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDRE 175
Query: 138 QRPGGSCPKSCVFTVFARDHGS--PRQDGRTYVTVNLLDANDHDP 180
+ + A+D G G T VT+ L D D
Sbjct: 176 AKE------EYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 108 bits (272), Expect = 7e-27
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 1049 VYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEI 1108
+ E T + L +D D G + + + + F +D +G ++ K LD EE
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREER 69
Query: 1109 NSYVLNVTASDGGTPR-LSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
Y L A D T R L F + V+D NDNPP F + + E + T
Sbjct: 70 AQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGT 124
Score = 89.7 bits (223), Expect = 2e-20
Identities = 50/222 (22%), Positives = 79/222 (35%), Gaps = 61/222 (27%)
Query: 439 YFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGS--------------------- 477
F I E T +V D+D G + + Y +
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLD 65
Query: 478 -----------EAVDGGNRKATENAIVEIIK------NSMVETLEFEHYNGYTFSILEDH 520
+AVD + E I+K N EF H Y ++ E
Sbjct: 66 REERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNP----PEFLH-EIYHANVPERS 120
Query: 521 DKMQENLGRDVGKIKIRNSDMQATID--QIKYAIVYGDPKKKFEINDRTGEIITAAK-LD 577
N+G V ++ ++D + ++ Y+I+ G P F + +TG I TA +D
Sbjct: 121 -----NVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP--YFSVEAQTGIIRTALPNMD 173
Query: 578 REEQSIYNLVVSAR------SRLSYGKTFVNITLLDLNDNAP 613
RE + Y++V+ A+ LS G T V ITL D +
Sbjct: 174 REAKEEYHVVIQAKDMGGHMGGLS-GTTKVTITLTDDYKDDD 214
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 185 bits (472), Expect = 1e-53
Identities = 56/209 (26%), Positives = 84/209 (40%), Gaps = 11/209 (5%)
Query: 935 TPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKL 994
+ E Q D D G +G + Y + + F I+E TG I +K
Sbjct: 4 ANQFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKR 62
Query: 995 LDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTT 1054
LDRE + L+ A + T + + I + D NDN P+F K +V E
Sbjct: 63 LDREEKPVYILRAQAVNRRT--GRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMAD 120
Query: 1055 VNTQLFHFQATDSD---IGVNNEVLFSIGSGNKRDTFHMDPVTGILYL-HKKLDYEEINS 1110
V T + ATD+D G + +V++SI G F ++ TGI+ +D E
Sbjct: 121 VGTFVVQVTATDADDPTYGNSAKVVYSILQGQ--PYFSVESETGIIKTALLNMDRENREQ 178
Query: 1111 YVLNVTASDGGTPR--LSTIFMFTINVED 1137
Y + + A D G LS I + D
Sbjct: 179 YQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 169 bits (431), Expect = 4e-48
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 17/211 (8%)
Query: 829 VFSVMENLPPDSFVGKLIATDKDVGRNAELSFALS--NAKGDFEIDSRNGFIKTMRSFDR 886
F + E D + +D+D G + L + LS A F I+ G I+ + DR
Sbjct: 7 FFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDR 65
Query: 887 ENLLQTTGQNFISLEATVSDNGS-PRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGA 945
E + L A + + ++ + + + I D NDN P F + Y + E A
Sbjct: 66 EE------KPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMA 119
Query: 946 SIGTQVFRVSTMDADE---GLNGDVYYKIISGNDDEHFSIDEATGQI-TISKLLDRETVS 1001
+GT V +V+ DAD+ G + V Y I+ G +FS++ TG I T +DRE
Sbjct: 120 DVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP--YFSVESETGIIKTALLNMDRENRE 177
Query: 1002 KFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
++ + + A+D + LS TT V I + D
Sbjct: 178 QYQVVIQAKDMGGQM-GGLSGTTTVNITLTD 207
Score = 156 bits (397), Expect = 1e-43
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 15/212 (7%)
Query: 721 MSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRN 779
M++ L E T + ++ + D D G+ + Y + D F I + G +
Sbjct: 3 MANQFFLLEEYTGSDYQYVGKLHSDQDRGDGS-LKYILSGDGAGDLFIINENTGDIQATK 61
Query: 780 SLDRETRDYYALTVLAEDHG-KYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPP 838
LDRE + Y L A + P +I I D NDN+P F+ + +V E
Sbjct: 62 RLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADV 121
Query: 839 DSFVGKLIATDKD---VGRNAELSFALSNAKGDFEIDSRNGFIKTM-RSFDRENLLQTTG 894
+FV ++ ATD D G +A++ +++ + F ++S G IKT + DREN
Sbjct: 122 GTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMDREN------ 175
Query: 895 QNFISLEATVSDNGSPR--LKDKVKVDVYITD 924
+ + D G L V++ +TD
Sbjct: 176 REQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 133 bits (336), Expect = 2e-35
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 12/202 (5%)
Query: 623 TIPENAAVGQEIYVARARDRDSGVNSRIFYSLSS-NPDDQFKIVETNGVIYLNKPIQSPP 681
+ E + D+D G + + Y LS D F I E G I K +
Sbjct: 9 LLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREE 67
Query: 682 GSTLTIEIVASDSG-KQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFE 740
+ A + + + + + I D+ND+ P+F Y ++ E V +
Sbjct: 68 KPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQ 127
Query: 741 LVAKDSD---LGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVR-NSLDRETRDYYALTVLA 795
+ A D+D GN+ V YSI++G F + + G + ++DRE R+ Y + + A
Sbjct: 128 VTATDADDPTYGNSAKVVYSILQGQ--PYFSVESETGIIKTALLNMDRENREQYQVVIQA 185
Query: 796 EDHG--KYPRSSSVPVVIHIID 815
+D G S + V I + D
Sbjct: 186 KDMGGQMGGLSGTTTVNITLTD 207
Score = 126 bits (319), Expect = 4e-33
Identities = 45/205 (21%), Positives = 72/205 (35%), Gaps = 43/205 (20%)
Query: 264 SEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTR 323
+ +L E + G +D+D G + + Y F IN +G I R
Sbjct: 4 ANQFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKR 62
Query: 324 -----------------DGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAAN 366
P ++ + I D ND +P FT++V ++ E +
Sbjct: 63 LDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVG 122
Query: 367 TLVATLTASDHDQ----------------------DSITGQLTVKTK-LDRETITDYELK 403
T V +TA+D D +S TG + +DRE Y++
Sbjct: 123 TFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMDRENREQYQVV 182
Query: 404 VIAKDHGTP--PQSSTATVFLFIED 426
+ AKD G S T TV + + D
Sbjct: 183 IQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 125 bits (317), Expect = 7e-33
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 25/206 (12%)
Query: 523 MQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQS 582
++E G D + +SD +KY + F IN+ TG+I +LDREE+
Sbjct: 10 LEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKP 69
Query: 583 IYNLVVSARSRLSY----GKTFVNITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVAR 638
+Y L A +R + ++ I + D+NDN PIF +D T+PE A VG +
Sbjct: 70 VYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVT 129
Query: 639 ARDRDS---GVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPIQSPPGSTL--------TI 687
A D D G ++++ YS+ F + G+I + +
Sbjct: 130 ATDADDPTYGNSAKVVYSILQG-QPYFSVESETGIIKTALL-------NMDRENREQYQV 181
Query: 688 EIVASDSGKQ--SLSSKHSVNVYIQD 711
I A D G Q LS +VN+ + D
Sbjct: 182 VIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 121 bits (306), Expect = 2e-31
Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 55/203 (27%)
Query: 193 FATVDENAINGSVVAAVSVVDPDEGLN------------------------------DRE 222
F ++E + D D G DRE
Sbjct: 7 FFLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDRE 66
Query: 223 HINKYNLTIIATDKGN-PPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVA 281
Y L A ++ P + II ++D+ND+EP+F K Y+A + E+A G++V
Sbjct: 67 EKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVV 126
Query: 282 GITATDED---TGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT---------------- 322
+TATD D G +A++ Y+ + G + F + +G+I T
Sbjct: 127 QVTATDADDPTYGNSAKVVYSILQGQPY--FSVESETGIIKTALLNMDRENREQYQVVIQ 184
Query: 323 -RDGG--PNPKWAYTQLKVSILD 342
+D G T + +++ D
Sbjct: 185 AKDMGGQMGGLSGTTTVNITLTD 207
Score = 118 bits (297), Expect = 3e-30
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 24/142 (16%)
Query: 361 ENSAANTLVATLTASDHDQ--------------------DSITGQLTVKTKLDRETITDY 400
E + ++ SD D+ + TG + +LDRE Y
Sbjct: 12 EYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVY 71
Query: 401 ELKVIAKDHGT-PPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAY 459
L+ A + T P + + I D+NDN P+F Y +PE VG +VQV+A
Sbjct: 72 ILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTAT 131
Query: 460 DLD---CGKNAQVTYSIESGSE 478
D D G +A+V YSI G
Sbjct: 132 DADDPTYGNSAKVVYSILQGQP 153
Score = 108 bits (271), Expect = 8e-27
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 1051 ENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINS 1110
E T + Q +D D G + + + + D F ++ TG + K+LD EE
Sbjct: 12 EYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPV 70
Query: 1111 YVLNVTASDGGT-PRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
Y+L A + T + F I + D NDN P F + E + T
Sbjct: 71 YILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGT 123
Score = 104 bits (262), Expect = 1e-25
Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 28/159 (17%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGT-PTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVS 94
+Q T +LDRE Y L A + T + + I D+NDN PIF V Y+ +
Sbjct: 57 IQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDV--YTAT 114
Query: 95 LNESVLPGTKVLQVIATDNDQ---GDNAKITYYLSETERKF----------TNCQQ---- 137
+ E GT V+QV ATD D G++AK+ Y + + + F T
Sbjct: 115 VPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMDRE 174
Query: 138 QRPGGSCPKSCVFTVFARDHGSPRQD--GRTYVTVNLLD 174
R + A+D G G T V + L D
Sbjct: 175 NRE------QYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 92.4 bits (230), Expect = 3e-21
Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 83/227 (36%)
Query: 88 VSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS--------------------- 126
+++ L E + + + +D D+G + + Y LS
Sbjct: 3 MANQFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATK 61
Query: 127 ----ETERKFTNCQQQRPGGSCPKSCVFTVFARDHGS-PRQDGRTYVTVNLLDANDHDPV 181
E + + A + + + + + + D ND++P+
Sbjct: 62 RLDREEKPVYI----------------LRAQAVNRRTGRPVEPESEFIIKIHDINDNEPI 105
Query: 182 IKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDE---GLN------------------- 219
F ATV E A G+ V V+ D D+ G +
Sbjct: 106 -----FTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESE 160
Query: 220 -----------DREHINKYNLTIIATDKGNP--PRTATAFLIIHVND 253
DRE+ +Y + I A D G + T + I + D
Sbjct: 161 TGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 77.7 bits (192), Expect = 3e-16
Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 62/221 (28%)
Query: 434 FYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGS---------------- 477
+ +Q+F + E T V D D G + + Y +
Sbjct: 2 WMANQFF-LLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQA 59
Query: 478 ----------------EAVDGGNRKATENAIVEIIK------NSMVETLEFEHYNGYTFS 515
+AV+ + E IIK N + F + YT +
Sbjct: 60 TKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPI----FTK-DVYTAT 114
Query: 516 ILEDHDKMQENLGRDVGKIKIRNSDMQATID--QIKYAIVYGDPKKKFEINDRTGEIITA 573
+ E ++G V ++ ++D + ++ Y+I+ G P F + TG I TA
Sbjct: 115 VPEMA-----DVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP--YFSVESETGIIKTA 167
Query: 574 AK-LDREEQSIYNLVVSAR------SRLSYGKTFVNITLLD 607
+DRE + Y +V+ A+ LS G T VNITL D
Sbjct: 168 LLNMDRENREQYQVVIQAKDMGGQMGGLS-GTTTVNITLTD 207
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 186 bits (474), Expect = 2e-53
Identities = 40/245 (16%), Positives = 75/245 (30%), Gaps = 30/245 (12%)
Query: 932 FLRTPYKVQISEGASIGTQVFRVSTM--DADEGLNGDVYYKI-----ISGNDDEHFSIDE 984
F R Y ++ + GT + V + +E + + + +++ I E
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 985 ATGQITISKLLDRETVSKFNLKVLARDAATVV-----------SNQLSSTTMVTIDVLDE 1033
TG + + + LD + K +++ TV + +
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 1034 NDNAP----------MFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGN 1083
N + P F +T + EN T + V + + G
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Query: 1084 KRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASD-GGTPRLSTIFMFTINVEDCNDNP 1142
F P + + LD E+ Y L + G + F + V D +D+
Sbjct: 183 G-LPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSA 241
Query: 1143 PSFPN 1147
P F N
Sbjct: 242 PEFEN 246
Score = 180 bits (459), Expect = 1e-51
Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 30/245 (12%)
Query: 823 FSNSSFVFSVMENLPPDSFVGKLIAT--DKDVGRNAELSFAL-------SNAKGDFEIDS 873
FS ++ + + + + + A + + L L + I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 874 RNGFIKTMRSFDRENLLQTTGQN--------FISLEATVSDNGSPRLKDKVKVDVYITDQ 925
G + RS D + + + +N ++ + + + + VY +
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 926 NDNSPQ----------FLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGN 975
N + P F T +I E GT V Y+++ G
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEG- 181
Query: 976 DDEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDEND 1035
+ F + +++ LDRE K+ L + A + + + V DE+D
Sbjct: 182 EGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAG--AREEVVMVPFPVTVYDEDD 239
Query: 1036 NAPMF 1040
+AP F
Sbjct: 240 SAPEF 244
Score = 158 bits (401), Expect = 9e-44
Identities = 49/245 (20%), Positives = 83/245 (33%), Gaps = 35/245 (14%)
Query: 615 FNRDKDEITIPENAAVGQEIYV--ARARDRDSGVNSRIFYSL------SSNPDDQFKIVE 666
F+RD + + A G + A + + R+ L + ++ +I E
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 667 TNGVIYLNKPI--------------QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDV 712
G++YL + + L + + + + VY
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 713 NDHTPV----------FDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGN 762
N P F + + E+ P + L V+Y ++EG
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Query: 763 GEDKFGIFPD-GFMYVRNSLDRETRDYYALTVLAEDH-GKYPRSSSVPVVIHIIDENDNK 820
G F PD + R +LDRE R+ Y L + H G VP + + DE+D+
Sbjct: 183 G-LPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSA 241
Query: 821 PEFSN 825
PEF N
Sbjct: 242 PEFEN 246
Score = 151 bits (382), Expect = 3e-41
Identities = 36/247 (14%), Positives = 78/247 (31%), Gaps = 38/247 (15%)
Query: 719 FDMSSYETSLLESTPVNNRFFELVA--KDSDLGNNGFVSYSI-----IEGNGEDKFGIFP 771
F +Y L + A + + + + + + I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 772 D-GFMYVRNSLDRETRDYYAL--------------TVLAEDHGKYPRSSSVPVVIHIIDE 816
D G +Y++ SLD + + ++ + + ++
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 817 NDNKPE----------FSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAK 866
N + P F + F + EN PP +F + + + +++ L +
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Query: 867 GD-FEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQ 925
G F + + T + DRE + + TV G+ V V + D+
Sbjct: 183 GLPFRSAPDSLEVSTRWALDRE----QREKYELVAVCTV-HAGAREEVVMVPFPVTVYDE 237
Query: 926 NDNSPQF 932
+D++P+F
Sbjct: 238 DDSAPEF 244
Score = 124 bits (312), Expect = 7e-32
Identities = 26/243 (10%), Positives = 55/243 (22%), Gaps = 39/243 (16%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATID-QIKYAIVY-----GDPKKKFEIND 565
Y + D + G + + + ++ + I +
Sbjct: 8 YWEKLYVD-----QAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 566 RTGEIITAAKLDREEQSIYNLVVSARSRLSY-----------------GKTFVNITLLDL 608
TG + LD ++ L+ +
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 609 NDNAPI----------FNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNP 658
N + P F + I EN G + + Y L
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Query: 659 DDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASD-SGKQSLSSKHSVNVYIQDVNDHTP 717
F+ + + + + V + +G + V + D +D P
Sbjct: 183 GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAP 242
Query: 718 VFD 720
F+
Sbjct: 243 EFE 245
Score = 120 bits (303), Expect = 1e-30
Identities = 37/240 (15%), Positives = 53/240 (22%), Gaps = 66/240 (27%)
Query: 89 SDYSVSLNESVLPGTKVLQVIAT--DNDQGDNAKITYYLSETERKFTNCQQ--------- 137
Y L GT +L V A ++ + ++ +L T R +
Sbjct: 6 DAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTG 65
Query: 138 -----------------QRPGGSCPKSCVFTVFAR--DHGSPRQDGRTYVTVNLLDANDH 178
R G + VF V N
Sbjct: 66 LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTS 125
Query: 179 DPVI-----KFRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLN-------------- 219
P + FP T + EN G+ +
Sbjct: 126 FPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLP 185
Query: 220 ----------------DREHINKYNLTIIATDK-GNPPRTATAFLIIHVNDVNDHEPVFE 262
DRE KY L + T G + V D +D P FE
Sbjct: 186 FRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 109 bits (273), Expect = 1e-26
Identities = 31/244 (12%), Positives = 61/244 (25%), Gaps = 80/244 (32%)
Query: 186 YFPSTAGFATVDENAINGSVVAAVSVV--DPDEGLN------------------------ 219
YF A + + + G+ + V + P+E +
Sbjct: 2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQ 61
Query: 220 ------------DREHINKYNL--------------TIIATDKGNPPRTATAFLIIHVND 253
D K ++ + T ++ +
Sbjct: 62 EDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSF 121
Query: 254 VNDHEPV----------FEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSG 303
N P F ++ S + E P G++ + + Y + G
Sbjct: 122 FNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEG 181
Query: 304 NEHQWFEINPTSGLITTK-----------------TRDGGPNPKWAYTQLKVSILDENDE 346
F P S ++T+ T G + V++ DE+D
Sbjct: 182 E-GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDS 240
Query: 347 KPQF 350
P+F
Sbjct: 241 APEF 244
Score = 101 bits (252), Expect = 8e-24
Identities = 26/234 (11%), Positives = 52/234 (22%), Gaps = 71/234 (30%)
Query: 261 FEKSEYSAVLSELAPAGSYVAGITAT--DEDTGVNAQIFYAF-----VSGNEHQWFEINP 313
F + Y L AG+ + + A + + ++ +E+ W I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 314 TSGLITTKTRDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLT 373
+GL+ + LD + L+
Sbjct: 63 DTGLLYLQ-----------------RSLDHSS-----------------------WEKLS 82
Query: 374 ASDHDQDSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPV 433
+ +T L V + ++ N + P
Sbjct: 83 VRNRGFPLLTVYLKV--------------FLSPTSLREGECQWPGCARVYFSFFNTSFPA 128
Query: 434 ----------FYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGS 477
F ++ +I E+ G V Y + G
Sbjct: 129 CSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Score = 87.7 bits (217), Expect = 2e-19
Identities = 24/185 (12%), Positives = 43/185 (23%), Gaps = 45/185 (24%)
Query: 36 LQTTGKLDRETVDFY--------------QLNISARDGGTPTRYGYLQVNVTILDVNDNP 81
L LD + + ++ +S V N +
Sbjct: 67 LYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSF 126
Query: 82 PIFAHSV--------SDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSETE-RKF 132
P + + S + E+ PGT + + Y L E E F
Sbjct: 127 PACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPF 186
Query: 133 T--------------NCQQQRPGGSCPKSCVFTVFARDH-GSPRQDGRTYVTVNLLDAND 177
+ +Q+ H G+ + V + D +D
Sbjct: 187 RSAPDSLEVSTRWALDREQRE-------KYELVAVCTVHAGAREEVVMVPFPVTVYDEDD 239
Query: 178 HDPVI 182
P
Sbjct: 240 SAPEF 244
Score = 81.1 bits (200), Expect = 5e-17
Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 31/154 (20%)
Query: 1040 FVKTESKISVYENTTVNTQLFHFQAT--DSDIGVNNEVLFSI-----GSGNKRDTFHMDP 1092
F + +Y + T L + A + + + + ++ + +
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 1093 VTGILYLHKKLDYEEINSYVL--------------NVTASDGGTPRLSTIFMFTINVEDC 1138
TG+LYL + LD+ + ++ + +
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 1139 NDNPP----------SFPNTAIVRQIRENIPINT 1162
N + P FP T +IREN P T
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGT 156
Score = 67.3 bits (164), Expect = 3e-12
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 36 LQTTGKLDRETVDFYQLNISARD-GGTPTRYGYLQVNVTILDVNDNPPIFAH 86
+ T LDRE + Y+L G + VT+ D +D+ P F +
Sbjct: 195 VSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFEN 246
Score = 40.3 bits (94), Expect = 0.002
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 434 FYPSQYFKQIPEDTQVGVSIVQVSAY--DLDCGKNAQVTYSIESGSEAVDGGN 484
F Y++++ D G ++ V A + + ++ + N
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHEN 55
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 184 bits (469), Expect = 4e-53
Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 20/216 (9%)
Query: 830 FSVMENLPPDSFVGKLIATDKDVGRNAELSFALS------NAKGDFEIDSRNGFIKTMRS 883
++ EN F +L+ D +N L ++++ G F I+ +G + +
Sbjct: 7 INLPENSRG-PFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 884 FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISE 943
DRE L A D ++++ + + + + D NDN P+FL + + E
Sbjct: 66 LDREL------IARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
Query: 944 GASIGTQVFRVSTMDADE--GLNGDVYYKIISGND----DEHFSIDEATGQI-TISKLLD 996
G+ GT V V+ +DAD+ LNG + Y+I+S F+I+ TG I T++ LD
Sbjct: 120 GSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLD 179
Query: 997 RETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
RE V ++ L + A D + LS+T I V D
Sbjct: 180 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 168 bits (428), Expect = 1e-47
Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 18/213 (8%)
Query: 939 VQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDE----HFSIDEATGQITISKL 994
+ + E + G + + +D N + Y + D+ F I+ +GQ++++K
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 995 LDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTT 1054
LDRE +++F+L+ A D NQ+ + + I+V+D NDN P F+ SV E +
Sbjct: 66 LDRELIARFHLRAHAVDING---NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSK 122
Query: 1055 VNTQLFHFQATDSDI--GVNNEVLFSIGSGN----KRDTFHMDPVTGILY-LHKKLDYEE 1107
T + A D+D +N + + I S + F ++ TG + + LD E+
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK 182
Query: 1108 INSYVLNVTASDGGTP---RLSTIFMFTINVED 1137
+ Y L + A+D LS I V D
Sbjct: 183 VQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 156 bits (397), Expect = 1e-43
Identities = 56/222 (25%), Positives = 87/222 (39%), Gaps = 24/222 (10%)
Query: 720 DMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGN-GEDKFGIF----PDGF 774
D +L E++ ELV SD N + YS+ + GIF G
Sbjct: 1 DWVIPPINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQ 59
Query: 775 MYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVME 834
+ V LDRE + L A D + + +VI++ID NDN+PEF + + SV E
Sbjct: 60 LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
Query: 835 NLPPDSFVGKLIATDKD--VGRNAELSFAL------SNAKGDFEIDSRNGFIKTM-RSFD 885
P ++V + A D D N L + + + + F I++ G I T+ D
Sbjct: 120 GSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLD 179
Query: 886 RENLLQTTGQNFISLEATVSDNGSP---RLKDKVKVDVYITD 924
RE +L +D L + + +TD
Sbjct: 180 REK------VQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 139 bits (353), Expect = 1e-37
Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 17/211 (8%)
Query: 621 EITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSS-----NPDDQFKIVETNGVIYLNK 675
I +PEN+ G D N + YS++ P F I +G + + K
Sbjct: 6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 64
Query: 676 PIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVN 735
P+ + + A D + + + + + D+ND+ P F + S+ E +
Sbjct: 65 PLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPG 124
Query: 736 NRFFELVAKDSDL--GNNGFVSYSIIEGN----GEDKFGIFPD-GFMY-VRNSLDRETRD 787
+ A D+D NG + Y I+ + F I + G + V LDRE
Sbjct: 125 TYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQ 184
Query: 788 YYALTVLAEDHGKYPR---SSSVPVVIHIID 815
Y L + A D P S++ VI + D
Sbjct: 185 QYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 123 bits (310), Expect = 6e-32
Identities = 48/201 (23%), Positives = 71/201 (35%), Gaps = 51/201 (25%)
Query: 277 GSYVAGITATDEDTGVNAQIFYAFVSGNEHQW----FEINPTSGLITTKTR--------- 323
G + + D N + Y+ Q F INP SG ++
Sbjct: 15 GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARF 74
Query: 324 -------DGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASD 376
D N + ++++D ND +P+F V N S+ E S T V T+TA D
Sbjct: 75 HLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAID 134
Query: 377 HDQ---------------------------DSITGQL-TVKTKLDRETITDYELKVIAKD 408
D ++ TG + TV LDRE + Y L + A D
Sbjct: 135 ADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
Query: 409 HGTPPQ---SSTATVFLFIED 426
P S+TAT + + D
Sbjct: 195 MEGNPTYGLSNTATAVITVTD 215
Score = 120 bits (302), Expect = 8e-31
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 28/155 (18%)
Query: 357 ISLLENSAANTLVATLTASDHDQ-------------------------DSITGQLTVKTK 391
I+L ENS L D+ + I+GQL+V
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 392 LDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGV 451
LDRE I + L+ A D + + + + D+NDN P F + +PE ++ G
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 452 SIVQVSAYDLD--CGKNAQVTYSIESGSEAVDGGN 484
++ V+A D D N + Y I S + + N
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPN 160
Score = 119 bits (300), Expect = 1e-30
Identities = 40/209 (19%), Positives = 65/209 (31%), Gaps = 62/209 (29%)
Query: 195 TVDENAINGSVVAAVSVVDPDEGLN----------------------------------- 219
+ EN+ G + + D N
Sbjct: 8 NLPENS-RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGSY 279
DRE I +++L A D ++I+V D+ND+ P F ++ + E + G+Y
Sbjct: 67 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126
Query: 280 VAGITATDED--TGVNAQIFYAFVSGNEHQ----WFEINPTSGLITTKT----------- 322
V +TA D D +N + Y +S F IN +G I T
Sbjct: 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQY 186
Query: 323 ------RDGGPNPK---WAYTQLKVSILD 342
D NP +++ D
Sbjct: 187 TLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 118 bits (297), Expect = 3e-30
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 1047 ISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGN----KRDTFHMDPVTGILYLHKK 1102
I++ EN+ SD N + +S+ F ++P++G L + K
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 1103 LDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
LD E I + L A D ++ INV D NDN P F + + E T
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Score = 116 bits (292), Expect = 2e-29
Identities = 49/223 (21%), Positives = 73/223 (32%), Gaps = 72/223 (32%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
L T LDRE + + L A D + + + ++D+NDN P F H V ++ S+
Sbjct: 60 LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV--WNGSV 117
Query: 96 NESVLPGTKVLQVIATDNDQ--GDNAKITYYLSETERKFTNCQQQRPGGSCPKSCVFTVF 153
E PGT V+ V A D D N + Y +
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILS-------------------------- 151
Query: 154 ARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVD 213
+P T+N T G ++ + +D
Sbjct: 152 ----QAPSTPSPNMFTIN----------------NET------------GDIITVAAGLD 179
Query: 214 PDEGLNDREHINKYNLTIIATDKGNPPR---TATAFLIIHVND 253
RE + +Y L I ATD P + TA +I V D
Sbjct: 180 -------REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 110 bits (276), Expect = 2e-27
Identities = 43/218 (19%), Positives = 80/218 (36%), Gaps = 25/218 (11%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYG----DPKKKFEINDRT 567
++ E+ G ++ SD + ++Y++ P F IN +
Sbjct: 5 PPINLPENSR------GPFPQELVRIRSDRDKNL-SLRYSVTGPGADQPPTGIFIINPIS 57
Query: 568 GEIITAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLDLNDNAPIFNRDKDEITI 624
G++ LDRE + ++L A + I ++D+NDN P F ++
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV 117
Query: 625 PENAAVGQEIYVARARDRD--SGVNSRIFYSLSSN-----PDDQFKIVETNGVIY-LNKP 676
PE + G + A D D + +N + Y + S + F I G I +
Sbjct: 118 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 677 IQSPPGSTLTIEIVASDSGKQ---SLSSKHSVNVYIQD 711
+ T+ I A+D LS+ + + + D
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 179 bits (455), Expect = 2e-51
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 12/207 (5%)
Query: 935 TPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKL 994
++ + + V ++ + G N + Y I + + F + G I +
Sbjct: 5 NRMHIREEIDSPLPHHVGKL---TSSVG-NKNAMYIIEGESANTIFKVQGYDGDIYAFER 60
Query: 995 LDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTT 1054
LDRE +++ L D S L + I V D NDNAP+FV+ SV E +
Sbjct: 61 LDREKKAEYELTAHIIDRRNNRS--LEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSR 118
Query: 1055 VNTQLFHFQATDSD---IGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSY 1111
+ T + A D+D + + V + I GN + F +D I LD E ++Y
Sbjct: 119 LGTSVTKVTAEDADDPTVAGHATVTYQIIKGN--EYFTVDDSGVIFTARADLDRESQSAY 176
Query: 1112 VLNVTASDG-GTPRLSTIFMFTINVED 1137
+ V A D G S+ I + D
Sbjct: 177 EIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 171 bits (435), Expect = 7e-49
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 18/211 (8%)
Query: 828 FVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALS--NAKGDFEIDSRNGFIKTMRSFD 885
+ E + DS + + N + + +A F++ +G I D
Sbjct: 5 NRMHIREEI--DSPLPHHVGKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLD 62
Query: 886 RENLLQTTGQNFISLEATVSD-NGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEG 944
RE + L A + D + L+ K + ++D NDN+P F++ + + E
Sbjct: 63 REK------KAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEM 116
Query: 945 ASIGTQVFRVSTMDADE---GLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETVS 1001
+ +GT V +V+ DAD+ + V Y+II GN+ +F++D++ T LDRE+ S
Sbjct: 117 SRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE--YFTVDDSGVIFTARADLDRESQS 174
Query: 1002 KFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
+ + V A+DA SST V I + D
Sbjct: 175 AYEIIVKAKDALG--LTGESSTATVIIRLTD 203
Score = 153 bits (389), Expect = 1e-42
Identities = 45/190 (23%), Positives = 65/190 (34%), Gaps = 12/190 (6%)
Query: 741 LVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRETRDYYALTVLAEDH- 798
V K + N Y I + F + G +Y LDRE + Y LT D
Sbjct: 20 HVGKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRR 79
Query: 799 GKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKD---VGRN 855
+I + D NDN P F F SV E + V K+ A D D V +
Sbjct: 80 NNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGH 139
Query: 856 AELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDN-GSPRLKD 914
A +++ + F +D DRE+ Q+ + D G
Sbjct: 140 ATVTYQIIKGNEYFTVDDSGVIFTARADLDRES------QSAYEIIVKAKDALGLTGESS 193
Query: 915 KVKVDVYITD 924
V + +TD
Sbjct: 194 TATVIIRLTD 203
Score = 138 bits (349), Expect = 3e-37
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 21/212 (9%)
Query: 614 IFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSS-NPDDQFKIVETNGVIY 672
I+NR + I E +V + N Y + + + FK+ +G IY
Sbjct: 3 IWNR----MHIREEIDSPLPHHVGKLTSSVG--NKNAMYIIEGESANTIFKVQGYDGDIY 56
Query: 673 LNKPI---QSPPGSTLTIEIVASDS-GKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSL 728
+ + + + D +SL + + D+ND+ P+F + S+
Sbjct: 57 AFERLDREKKA---EYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSV 113
Query: 729 LESTPVNNRFFELVAKDSD---LGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRE 784
E + + ++ A+D+D + + V+Y II+GN + F + R LDRE
Sbjct: 114 PEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN--EYFTVDDSGVIFTARADLDRE 171
Query: 785 TRDYYALTVLAEDH-GKYPRSSSVPVVIHIID 815
++ Y + V A+D G SS+ V+I + D
Sbjct: 172 SQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 124 bits (313), Expect = 2e-32
Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 21/209 (10%)
Query: 513 TFSILEDHDKMQENLGRDVGKIKIRNSDMQATID--QIKYAIVYGDPKKKFEINDRTGEI 570
I E+ D L VGK+ +++ Y I F++ G+I
Sbjct: 6 RMHIREEIDS---PLPHHVGKL-------TSSVGNKNAMYIIEGESANTIFKVQGYDGDI 55
Query: 571 ITAAKLDREEQSIYNLVVSARSRLSY----GKTFVNITLLDLNDNAPIFNRDKDEITIPE 626
+LDRE+++ Y L R + + I + D+NDNAPIF + ++PE
Sbjct: 56 YAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPE 115
Query: 627 NAAVGQEIYVARARDRDS---GVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPIQSPPGS 683
+ +G + A D D ++ + Y + ++ F + ++ + + S
Sbjct: 116 MSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG-NEYFTVDDSGVIFTARADLDRESQS 174
Query: 684 TLTIEIVASD-SGKQSLSSKHSVNVYIQD 711
I + A D G SS +V + + D
Sbjct: 175 AYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 119 bits (301), Expect = 9e-31
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 220 DREHINKYNLTIIATDK-GNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGS 278
DRE +Y LT D+ N + II V+D+ND+ P+F + ++ + E++ G+
Sbjct: 62 DREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGT 121
Query: 279 YVAGITATDED---TGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT------------- 322
V +TA D D +A + Y + GNE+ F ++ + + T +
Sbjct: 122 SVTKVTAEDADDPTVAGHATVTYQIIKGNEY--FTVDDSGVIFTARADLDRESQSAYEII 179
Query: 323 ---RDG-GPNPKWAYTQLKVSILD 342
+D G + + + + + D
Sbjct: 180 VKAKDALGLTGESSTATVIIRLTD 203
Score = 118 bits (299), Expect = 1e-30
Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 44/195 (22%)
Query: 272 ELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTR-------- 323
+P +V +T++ N Y + + F++ G I R
Sbjct: 13 IDSPLPHHVGKLTSSVG----NKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAE 68
Query: 324 ---------DGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTA 374
++ + + D ND P F Q + N S+ E S T V +TA
Sbjct: 69 YELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTA 128
Query: 375 SDHDQ----------------------DSITGQLTVKTKLDRETITDYELKVIAKDH-GT 411
D D D T + LDRE+ + YE+ V AKD G
Sbjct: 129 EDADDPTVAGHATVTYQIIKGNEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGL 188
Query: 412 PPQSSTATVFLFIED 426
+SSTATV + + D
Sbjct: 189 TGESSTATVIIRLTD 203
Score = 116 bits (293), Expect = 8e-30
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 23/145 (15%)
Query: 357 ISLLENSAAN--TLVATLTASDHDQ-----------------DSITGQLTVKTKLDRETI 397
+ + E + V LT+S ++ G + +LDRE
Sbjct: 7 MHIREEIDSPLPHHVGKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKK 66
Query: 398 TDYELKVIAKDHGT-PPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQV 456
+YEL D + + + D+NDN P+F + +PE +++G S+ +V
Sbjct: 67 AEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKV 126
Query: 457 SAYDLD---CGKNAQVTYSIESGSE 478
+A D D +A VTY I G+E
Sbjct: 127 TAEDADDPTVAGHATVTYQIIKGNE 151
Score = 104 bits (261), Expect = 2e-25
Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 27/187 (14%)
Query: 10 VQVSDTLQNSKAKVTANPSGETSYLY-------LQTTGKLDRETVDFYQLNISARDGGT- 61
+++ ++ N A + + +LDRE Y+L D
Sbjct: 22 GKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNN 81
Query: 62 PTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQ---GDN 118
+ + + + D+NDN PIF + ++ S+ E GT V +V A D D +
Sbjct: 82 RSLEPPSKFIIKVSDINDNAPIFVQKI--FNGSVPEMSRLGTSVTKVTAEDADDPTVAGH 139
Query: 119 AKITYYLSETERKFTNCQQQRPGG----SCP------KSCVFTVFARDH-GSPRQDGRTY 167
A +TY + + FT G + V A+D G +
Sbjct: 140 ATVTYQIIKGNEYFT---VDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTAT 196
Query: 168 VTVNLLD 174
V + L D
Sbjct: 197 VIIRLTD 203
Score = 101 bits (254), Expect = 2e-24
Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 1047 ISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYE 1106
+ + E + T S N ++ I + F + G +Y ++LD E
Sbjct: 7 MHIREEIDSPLPHHVGKLTSSVG--NKNAMYIIEGESANTIFKVQGYDGDIYAFERLDRE 64
Query: 1107 EINSYVLNVTASDGGT-PRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
+ Y L D L F I V D NDN P F + E + T
Sbjct: 65 KKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGT 121
Score = 82.8 bits (205), Expect = 5e-18
Identities = 30/222 (13%), Positives = 59/222 (26%), Gaps = 84/222 (37%)
Query: 91 YSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS------------------------ 126
+ V ++ ++ N Y +
Sbjct: 7 MHIREEIDSPLPHHVGKLTSSV----GNKNAMYIIEGESANTIFKVQGYDGDIYAFERLD 62
Query: 127 -ETERKFTNCQQQRPGGSCPKSCVFTVFARDH-GSPRQDGRTYVTVNLLDANDHDPVIKF 184
E + ++ T D + + + + + D ND+ P+
Sbjct: 63 REKKAEYE----------------LTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPI--- 103
Query: 185 RYFPSTAGFATVDENAINGSVVAAVSVVDPDE---GLN---------------------- 219
F +V E + G+ V V+ D D+ +
Sbjct: 104 --FVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEYFTVDDSGVI 161
Query: 220 -------DREHINKYNLTIIATDK-GNPPRTATAFLIIHVND 253
DRE + Y + + A D G ++TA +II + D
Sbjct: 162 FTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A
3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A*
3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 176 bits (448), Expect = 2e-50
Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 24/217 (11%)
Query: 830 FSVMENLPPDSFVGKLIATDKDVGRNAELSFALS------NAKGDFEIDSRNGFIKTMRS 883
S EN F L+ + + ++ ++++ G F I+ G++K +
Sbjct: 7 ISCPENEKG-EFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 884 FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISE 943
DRE L + + ++D +++ + +TDQNDN P+F + ++ ++E
Sbjct: 66 LDREA------IAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 944 GASIGTQVFRVSTMDADEG---LNGDVYYKIISGNDD----EHFSIDEATGQI-TISKLL 995
GA GT V +VS DAD+ N + Y I+S + + F+++ TG I ++ L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 996 DRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
DRE+ + L V A D LS+T I V D
Sbjct: 180 DRESYPTYTLVVQAADLQG---EGLSTTAKAVITVKD 213
Score = 175 bits (447), Expect = 3e-50
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 16/214 (7%)
Query: 936 PYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDE----HFSIDEATGQITI 991
+ E G + + ++ V+Y I D+ F I+ TG + +
Sbjct: 4 IAAISCPEN-EKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKV 62
Query: 992 SKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYE 1051
++ LDRE ++K+ L A + + + I V D+NDN P F + + SV E
Sbjct: 63 TQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 1052 NTTVNTQLFHFQATDSDIGV---NNEVLFSIGSGN----KRDTFHMDPVTGILY-LHKKL 1103
T + ATD+D V N + ++I S + ++ F ++ TG++ L L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 1104 DYEEINSYVLNVTASDGGTPRLSTIFMFTINVED 1137
D E +Y L V A+D LST I V+D
Sbjct: 180 DRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 162 bits (413), Expect = 1e-45
Identities = 56/216 (25%), Positives = 83/216 (38%), Gaps = 22/216 (10%)
Query: 724 YETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSII-EGNGEDKFGIFP----DGFMYVR 778
S E+ LV S+ V YSI +G + G+F G++ V
Sbjct: 5 AAISCPENEKGEFPKN-LVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 779 NSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPP 838
LDRE Y L A + +VI + D+NDN+PEF+ F SV E P
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 839 DSFVGKLIATDKD---VGRNAELSFAL------SNAKGDFEIDSRNGFIKTMRS-FDREN 888
+ V K+ ATD D NA +++ + K F ++ G I + S DRE+
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Query: 889 LLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITD 924
+L +D L K + + D
Sbjct: 184 ------YPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 142 bits (361), Expect = 9e-39
Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 15/209 (7%)
Query: 621 EITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSS-----NPDDQFKIVETNGVIYLNK 675
I+ PEN G+ + +++FYS++ P F I G + + +
Sbjct: 6 AISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQ 64
Query: 676 PIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVN 735
P+ + + A S +++ + + + D ND+ P F +E S+ E
Sbjct: 65 PLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG 124
Query: 736 NRFFELVAKDSDLG---NNGFVSYSIIEGN----GEDKFGIFPD-GFMYVRNS-LDRETR 786
++ A D+D N ++Y+I+ + ++ F + D G + V S LDRE+
Sbjct: 125 TSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY 184
Query: 787 DYYALTVLAEDHGKYPRSSSVPVVIHIID 815
Y L V A D S++ VI + D
Sbjct: 185 PTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 127 bits (321), Expect = 2e-33
Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 50/210 (23%)
Query: 266 YSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQW----FEINPTSGLITTK 321
+ E G + + + ++FY+ + F I +G +
Sbjct: 5 AAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 322 TR----------------DGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAA 365
++ +++ D+ND +P+FTQ V S+ E +
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 366 NTLVATLTASDHDQ----------------------------DSITGQLTVKTK-LDRET 396
T V ++A+D D + TG ++V T LDRE+
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Query: 397 ITDYELKVIAKDHGTPPQSSTATVFLFIED 426
Y L V A D S+TA + ++D
Sbjct: 184 YPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 126 bits (319), Expect = 4e-33
Identities = 40/208 (19%), Positives = 63/208 (30%), Gaps = 60/208 (28%)
Query: 194 ATVDENAINGSVVAAVSVVDPDEGLN---------------------------------- 219
+ EN G + + +
Sbjct: 7 ISCPENE-KGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 220 -DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELAPAGS 278
DRE I KY L A ++I V D ND+ P F + + ++E A G+
Sbjct: 66 LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125
Query: 279 YVAGITATDEDTGV---NAQIFYAFVSGNEHQ----WFEINPTSGLITTKT--------- 322
V ++ATD D V NA I Y VS + F +N +G+I+ T
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 323 --------RDGGPNPKWAYTQLKVSILD 342
D + +++ D
Sbjct: 186 TYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 124 bits (313), Expect = 3e-32
Identities = 51/221 (23%), Positives = 70/221 (31%), Gaps = 70/221 (31%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
L+ T LDRE + Y L A +++ +T+ D NDN P F V + S+
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEV--FEGSV 117
Query: 96 NESVLPGTKVLQVIATDNDQG---DNAKITYYLSETERKFTNCQQQRPGGSCPKSCVFTV 152
E +PGT V++V ATD D NA I Y +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS------------------------- 152
Query: 153 FARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVV 212
P + TVN T G + S +
Sbjct: 153 -----QDPELPHKNMFTVN----------------RDT------------GVISVLTSGL 179
Query: 213 DPDEGLNDREHINKYNLTIIATDKGNPPRTATAFLIIHVND 253
D RE Y L + A D + TA +I V D
Sbjct: 180 D-------RESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 120 bits (303), Expect = 5e-31
Identities = 51/223 (22%), Positives = 80/223 (35%), Gaps = 37/223 (16%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYG----DPKKKFEINDRT 567
S E+ G + S+ ++ Y+I P F I T
Sbjct: 5 AAISCPENEK------GEFPKNLVQIKSNRDKET-KVFYSITGQGADKPPVGVFIIERET 57
Query: 568 GEIITAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLDLNDNAPIFNRDKDEITI 624
G + LDRE + Y L A S + IT+ D NDN P F ++ E ++
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 625 PENAAVGQEIYVARARDRDSGV---NSRIFYSLSSN-----PDDQFKIVETNGVIYLNKP 676
E A G + A D D V N+ I Y++ S + F + GVI +
Sbjct: 118 AEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT- 176
Query: 677 IQSPPGSTL--------TIEIVASDSGKQSLSSKHSVNVYIQD 711
S L T+ + A+D + LS+ + ++D
Sbjct: 177 ------SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 116 bits (292), Expect = 2e-29
Identities = 37/156 (23%), Positives = 51/156 (32%), Gaps = 29/156 (18%)
Query: 357 ISLLENSAANTLVATLTASDHDQ-------------------------DSITGQLTVKTK 391
IS EN L ++ + TG L V
Sbjct: 7 ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 392 LDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGV 451
LDRE I Y L A + + + D NDN P F + + E G
Sbjct: 66 LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125
Query: 452 SIVQVSAYDLD---CGKNAQVTYSIESGSEAVDGGN 484
S+++VSA D D NA + Y+I S + N
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 161
Score = 108 bits (273), Expect = 5e-27
Identities = 29/120 (24%), Positives = 40/120 (33%), Gaps = 5/120 (4%)
Query: 1047 ISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNK----RDTFHMDPVTGILYLHKK 1102
IS EN + S+ +V +SI F ++ TG L + +
Sbjct: 7 ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 1103 LDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
LD E I Y+L A + I V D NDN P F + E T
Sbjct: 66 LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 169 bits (431), Expect = 5e-48
Identities = 65/220 (29%), Positives = 94/220 (42%), Gaps = 20/220 (9%)
Query: 826 SSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFAL--SNAKGDFEIDSRNGFIKTMRS 883
S + + P VGK++ +D+ G L+ + KG F I+ G + R+
Sbjct: 6 SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT 65
Query: 884 FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISE 943
DRE L +D L+ V ++V + DQNDN P F PY + E
Sbjct: 66 LDRET------IATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVME 119
Query: 944 GASIGTQVFRVSTMDADE--GLNGDVYYKIISGNDD----EHFSIDEATGQITI---SKL 994
G+ GT V R++ DAD+ N + Y I D F ID G I L
Sbjct: 120 GSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPAL 179
Query: 995 LDRETV--SKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
LDRET+ K+ L + A+D A + L+ T TI + D
Sbjct: 180 LDRETLENPKYELIIEAQDMA-GLDVGLTGTATATIVIDD 218
Score = 169 bits (429), Expect = 8e-48
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 16/216 (7%)
Query: 935 TPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKL 994
+P + ++ V +V D EG + K + + F I+E TG +++++
Sbjct: 6 SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT 65
Query: 995 LDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVYENTT 1054
LDRET++ + L V DA+ L + + V+D+NDN P+F + V E +
Sbjct: 66 LDRETIATYQLYVETTDAS---GKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSP 122
Query: 1055 VNTQLFHFQATDSD--IGVNNEVLFSIGSGN----KRDTFHMDPVTGILYL---HKKLDY 1105
T + A D+D N + ++I + F++DP G + LD
Sbjct: 123 TGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDR 182
Query: 1106 E--EINSYVLNVTASDGG--TPRLSTIFMFTINVED 1137
E E Y L + A D L+ TI ++D
Sbjct: 183 ETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 160 bits (406), Expect = 1e-44
Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 18/209 (8%)
Query: 730 ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRETRDY 788
+ P ++V D G+ ++ ++ + + F I + G + V +LDRET
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT 73
Query: 789 YALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIAT 848
Y L V D VP+ + +ID+NDN+P F ++ VME P + V ++ A
Sbjct: 74 YQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAF 133
Query: 849 DKD--VGRNAELSFALSN------AKGDFEIDSRNGFIKTMRS---FDRENLLQTTGQNF 897
D D NA L + + + F ID G I T+ S DRE T
Sbjct: 134 DADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRE----TLENPK 189
Query: 898 ISLEATVSDNG--SPRLKDKVKVDVYITD 924
L D L + I D
Sbjct: 190 YELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 134 bits (339), Expect = 1e-35
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 17/211 (8%)
Query: 622 ITIPEN--AAVGQEIYVARARDRDSGVNSRIFYSL-SSNPDDQFKIVETNGVIYLNKPIQ 678
I IPEN +++ DR G R+ +P F+I E G + + + +
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 679 SPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRF 738
+T + + +D+ ++L + V + D ND+ P+F Y ++E +P
Sbjct: 68 RETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTV 127
Query: 739 FELVAKDSD--LGNNGFVSYSIIEGNGEDK----FGIFPD-GFMYVRNS---LDRETRDY 788
+ A D+D +N + Y+I + + F I P+ G + S LDRET +
Sbjct: 128 MRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLEN 187
Query: 789 --YALTVLAEDHGKY--PRSSSVPVVIHIID 815
Y L + A+D + + I I D
Sbjct: 188 PKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 127 bits (322), Expect = 2e-33
Identities = 48/217 (22%), Positives = 76/217 (35%), Gaps = 21/217 (9%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEII 571
I E+ + RDVGK+ + + + ++ V DPK F IN+ TG +
Sbjct: 6 SPILIPENQR---QPFPRDVGKVVDSDRP-EGSKFRLTGKGVDQDPKGTFRINENTGSVS 61
Query: 572 TAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLDLNDNAPIFNRDKDEITIPENA 628
LDRE + Y L V G + + ++D NDN PIF + E +
Sbjct: 62 VTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGS 121
Query: 629 AVGQEIYVARARDRD--SGVNSRIFYSLSSN-----PDDQFKIVETNGVIYLNKPIQS-- 679
G + A D D + N+ + Y++ + F I G I
Sbjct: 122 PTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLD 181
Query: 680 ---PPGSTLTIEIVASDSGKQ--SLSSKHSVNVYIQD 711
+ I A D L+ + + I D
Sbjct: 182 RETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 125 bits (316), Expect = 1e-32
Identities = 42/206 (20%), Positives = 69/206 (33%), Gaps = 50/206 (24%)
Query: 271 SELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKT-------- 322
++ P V + +D G ++ V + F IN +G ++
Sbjct: 13 NQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIA 72
Query: 323 --------RDGGPNPKWAYTQLKVSILDENDEKPQFTQNVLNISLLENSAANTLVATLTA 374
D L+V ++D+ND +P F + ++E S T V +TA
Sbjct: 73 TYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTA 132
Query: 375 SDHDQ---------------------------DSITGQLTV---KTKLDRETITD--YEL 402
D D D G + LDRET+ + YEL
Sbjct: 133 FDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYEL 192
Query: 403 KVIAKDHG--TPPQSSTATVFLFIED 426
+ A+D + TAT + I+D
Sbjct: 193 IIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 118 bits (298), Expect = 3e-30
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 357 ISLLENSAAN--TLVATLTASDHDQ---------------------DSITGQLTVKTKLD 393
I + EN V + SD + + TG ++V LD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 394 RETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSI 453
RETI Y+L V D + + + D NDN P+F Y + E + G ++
Sbjct: 68 RETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTV 127
Query: 454 VQVSAYDLDC--GKNAQVTYSIESGSEAVDGGN 484
++++A+D D NA + Y+I + N
Sbjct: 128 MRMTAFDADDPATDNALLRYNIRQQTPDKPSPN 160
Score = 116 bits (293), Expect = 1e-29
Identities = 50/224 (22%), Positives = 73/224 (32%), Gaps = 71/224 (31%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSL 95
+ T LDRET+ YQL + D T G + + V ++D NDN PIF Y +
Sbjct: 60 VSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGP--YIGHV 117
Query: 96 NESVLPGTKVLQVIATDNDQ--GDNAKITYYLSETERKFTNCQQQRPGGSCPKSCVFTVF 153
E GT V+++ A D D DNA + Y + +
Sbjct: 118 MEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQ-------------------------- 151
Query: 154 ARDHGSPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVD 213
+P + ++ P + V
Sbjct: 152 ----QTPDKPSPNMFYID----------------PEK----------------GDIVTVV 175
Query: 214 PDEGLNDREHI--NKYNLTIIATDKG--NPPRTATAFLIIHVND 253
L DRE + KY L I A D + T TA I ++D
Sbjct: 176 SPALL-DRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 113 bits (284), Expect = 2e-28
Identities = 26/116 (22%), Positives = 42/116 (36%)
Query: 1047 ISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYE 1106
I + + +D G + + + TF ++ TG + + + LD E
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRE 69
Query: 1107 EINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
I +Y L V +D L + V D NDN P F + + E P T
Sbjct: 70 TIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGT 125
Score = 68.2 bits (167), Expect = 7e-13
Identities = 39/225 (17%), Positives = 64/225 (28%), Gaps = 64/225 (28%)
Query: 436 PSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE----------------- 478
S + + +V D G ++T
Sbjct: 5 VSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTR 64
Query: 479 ---------------AVDGGNRKATENAIVEIIKNSMVETL-----EFEHYNGYTFSILE 518
D + +E+I V F Y ++E
Sbjct: 65 TLDRETIATYQLYVETTDASGKTLEGPVPLEVI----VIDQNDNRPIFRE-GPYIGHVME 119
Query: 519 DHDKMQENLGRDVGKIKIRNSDMQATID-QIKYAIVYGDPKKK----FEINDRTGEIITA 573
G V ++ ++D AT + ++Y I P K F I+ G+I+T
Sbjct: 120 GS-----PTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTV 174
Query: 574 ---AKLDRE--EQSIYNLVVSAR------SRLSYGKTFVNITLLD 607
A LDRE E Y L++ A+ L+ G I + D
Sbjct: 175 VSPALLDRETLENPKYELIIEAQDMAGLDVGLT-GTATATIVIDD 218
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 119
Score = 129 bits (327), Expect = 2e-35
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 920 VYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDD-- 977
+ NDNSP+F ++ Y+ ++E ++ GT + ++ D D G+NG + Y + +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 978 EHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNA 1037
+DE +G +++ +DRE V++ V+ARD + V +++ DENDN
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRG---QPPKTDKATVVLNIKDENDNV 118
Query: 1038 P 1038
P
Sbjct: 119 P 119
Score = 122 bits (309), Expect = 7e-33
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 1028 IDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGNK--R 1085
NDN+P F K+ + + EN+ T + +A D D+GVN ++ + G+ + R
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 1086 DTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPP 1143
+D +G L + ++D EE+N V A D G P + +N++D NDN P
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 106 bits (268), Expect = 2e-27
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 23/118 (19%)
Query: 338 VSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQ------------------ 379
S ND P+F ++V L ENSA T + L A+D D
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 380 -----DSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNP 432
D +G L+V ++DRE + V+A+D G PP++ ATV L I+D NDN P
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 105 bits (264), Expect = 7e-27
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 707 VYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSI--IEGNGE 764
ND++P F+ S YE L E++ +L A D D+G NG + Y +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 765 DKFGIFPD-GFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKP 821
+ G++ V + +DRE + TV+A D G+ P++ VV++I DENDN P
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 104 bits (262), Expect = 1e-26
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 813 IIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGD---- 868
NDN P F S + + EN P + + +L A D DVG N ++ + A
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRL 63
Query: 869 FEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDN 928
+D +G++ + DRE N + D G P DK V + I D+NDN
Sbjct: 64 LRLDETSGWLSVLHRIDREE------VNQLRFTVMARDRGQPPKTDKATVVLNIKDENDN 117
Query: 929 SP 930
P
Sbjct: 118 VP 119
Score = 101 bits (255), Expect = 1e-25
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 251 VNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAF--VSGNEHQW 308
+ ND+ P FEKS Y A L+E + G+ + + A D D GVN QI Y F + + +
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRL 63
Query: 309 FEINPTSGLITTKT----------------RDGGPNPKWAYTQLKVSILDENDEKP 348
++ TSG ++ RD G PK + ++I DEND P
Sbjct: 64 LRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 97.9 bits (245), Expect = 3e-24
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 603 ITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQ- 661
+ NDN+P F + E + EN+A G I RA D D GVN +I Y + +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 662 --FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTP 717
++ ET+G + + I + L ++A D G+ + K +V + I+D ND+ P
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 88.3 bits (220), Expect = 6e-21
Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 45/136 (33%)
Query: 72 VTILDVNDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS----- 126
+ NDN P F SV Y L E+ PGT +LQ+ A D D G N +I Y
Sbjct: 2 SSGSSGNDNSPRFEKSV--YEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATES 59
Query: 127 ----------------------ETERKFTNCQQQRPGGSCPKSCVFTVFARDHGSPRQDG 164
E + FTV ARD G P +
Sbjct: 60 VRRLLRLDETSGWLSVLHRIDREEVNQLR----------------FTVMARDRGQPPKTD 103
Query: 165 RTYVTVNLLDANDHDP 180
+ V +N+ D ND+ P
Sbjct: 104 KATVVLNIKDENDNVP 119
Score = 73.7 bits (182), Expect = 9e-16
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 38/123 (30%)
Query: 170 VNLLDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLN---------- 219
+ ND+ P F + A + EN+ G+ + + D D G+N
Sbjct: 2 SSGSSGNDNSPR-----FEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAA 56
Query: 220 -----------------------DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVND 256
DRE +N+ T++A D+G PP+T A +++++ D ND
Sbjct: 57 TESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDEND 116
Query: 257 HEP 259
+ P
Sbjct: 117 NVP 119
Score = 69.4 bits (171), Expect = 2e-14
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 424 IEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSEAV 480
NDN+P F S Y + E++ G I+Q+ A DLD G N Q+ Y + +E+V
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESV 60
Score = 63.3 bits (155), Expect = 4e-12
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 547 QIKYAIVYGDPK--KKFEINDRTGEIITAAKLDREEQSIYNLVVSAR----SRLSYGKTF 600
QI+Y + +++ +G + ++DREE + V AR + K
Sbjct: 48 QIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKT-DKAT 106
Query: 601 VNITLLDLNDNAP 613
V + + D NDN P
Sbjct: 107 VVLNIKDENDNVP 119
Score = 60.6 bits (148), Expect = 4e-11
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 28 SGETSYLYLQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPP 82
SG L ++DRE V+ + + ARD G P + V + I D NDN P
Sbjct: 70 SGW-----LSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 34.0 bits (79), Expect = 0.068
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 1133 INVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
+ NDN P F + + EN T
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGT 31
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 113 bits (285), Expect = 1e-29
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 920 VYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKI---ISGND 976
+ NDN P F +V I E A +GT V ++ DAD G N ++ Y ++
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 977 DEHFSIDEATGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDEN 1034
F+++ TG IT+ + LDRE + + VLA D + + VTI+V D N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGS-----STPARATVTINVTDVN 114
Score = 107 bits (269), Expect = 2e-27
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 1028 IDVLDENDNAPMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIG---SGNK 1084
NDN P+F + + ++ + EN V T + ATD+DIG N E+ + G +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 1085 RDTFHMDPVTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCN 1139
+ F ++ TG++ + + LD EE + + V ASDG + TINV D N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARA--TVTINVTDVN 114
Score = 91.4 bits (228), Expect = 5e-22
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 21/115 (18%)
Query: 249 IHVNDVNDHEPVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAF---VSGNE 305
+ ND+ PVF++ + + E AP G+ V + ATD D G NA+I Y F V+
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 306 HQWFEINPTSGLITTKT----------------RDGGPNPKWAYTQLKVSILDEN 344
+ F +N T+GLIT + DG P A + +++ D N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTP--ARATVTINVTDVN 114
Score = 89.1 bits (222), Expect = 3e-21
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 26/115 (22%)
Query: 338 VSILDENDEKPQFTQNVLNISLLENSAANTLVATLTASDHDQ------------------ 379
S ND +P F + + + + EN+ T V L A+D D
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 380 ------DSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVN 428
++ TG +TV+ LDRE +++ V+A D + P + ATV + + DVN
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTP--ARATVTINVTDVN 114
Score = 86.4 bits (215), Expect = 3e-20
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 707 VYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSI---IEGNG 763
ND+ PVF E + E+ PV +L A D+D+G+N + Y +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 764 EDKFGIFPD-GFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDEN 817
+ F + G + V+ SLDRE + +TVLA D P ++ V I++ D N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARAT--VTINVTDVN 114
Score = 85.2 bits (212), Expect = 8e-20
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 603 ITLLDLNDNAPIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQ- 661
+ NDN P+F + E+ IPENA VG + A D D G N+ I Y +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 662 ---FKIVETNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVN 713
F + T G+I + + + + + ++ASD S ++ +V + + DVN
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGS--STPARATVTINVTDVN 114
Score = 83.3 bits (207), Expect = 3e-19
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 811 IHIIDENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGD-- 868
NDN+P F + EN P + V +L ATD D+G NAE+ +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 869 ---FEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQ 925
F +++ G I RS DRE + SD S + V ++V TD
Sbjct: 62 KRLFALNNTTGLITVQRSLDREE------TAIHKVTVLASDGSSTPARATVTINV--TDV 113
Query: 926 N 926
N
Sbjct: 114 N 114
Score = 78.3 bits (194), Expect = 2e-17
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 72 VTILDVNDNPPIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS 126
+ NDN P+F V + E+ GT V+Q+ ATD D G NA+I Y
Sbjct: 2 SSGSSGNDNRPVFKEGQ--VEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFG 54
Score = 65.6 bits (161), Expect = 6e-13
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 424 IEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIES 475
NDN PVF Q IPE+ VG S++Q+ A D D G NA++ Y +
Sbjct: 4 GSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGA 55
Score = 61.7 bits (151), Expect = 1e-11
Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 41/120 (34%)
Query: 170 VNLLDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLN---------- 219
+ ND+ PV F + ENA G+ V + D D G N
Sbjct: 2 SSGSSGNDNRPV-----FKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQ 56
Query: 220 ------------------------DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVN 255
DRE + +T++A+D + P AT + I+V DVN
Sbjct: 57 VAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARAT--VTINVTDVN 114
Score = 48.6 bits (117), Expect = 4e-07
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 547 QIKYAI---VYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSR--LSYGKTFV 601
+I+Y V K+ F +N+ TG I LDREE +I+ + V A + V
Sbjct: 48 EIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTP-ARATV 106
Query: 602 NITLLDLN 609
I + D+N
Sbjct: 107 TINVTDVN 114
Score = 45.1 bits (108), Expect = 7e-06
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 38 TTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVN 78
LDRE +++ + A DG + V + + DVN
Sbjct: 76 VQRSLDREETAIHKVTVLASDGSSTP--ARATVTINVTDVN 114
Score = 35.5 bits (83), Expect = 0.017
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 1133 INVEDCNDNPPSFPNTAIVRQIRENIPINT 1162
+ NDN P F + I EN P+ T
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGT 31
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1
PDB: 1nch_A 1nci_A
Length = 110
Score = 105 bits (265), Expect = 4e-27
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 939 VQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDE----HFSIDEATGQITISKL 994
+ + E + G + + + N + Y + D+ F I+ +GQ++++K
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 995 LDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMF 1040
LDRE +++F+L+ A D NQ+ + + I+V+D NDN P F
Sbjct: 68 LDRELIARFHLRAHAVDING---NQVENPIDIVINVIDMNDNRPEF 110
Score = 101 bits (255), Expect = 1e-25
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 1047 ISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGN----KRDTFHMDPVTGILYLHKK 1102
I++ EN+ S N + +S+ F ++P++G L + K
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 1103 LDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSF 1145
LD E I + L A D ++ INV D NDN P F
Sbjct: 68 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 90.8 bits (226), Expect = 8e-22
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 727 SLLESTPVNNRFFELVAKDSDLGNNGFVSYSII-EGNGEDKFGIF---PD-GFMYVRNSL 781
+L E++ ELV S N + YS+ G + GIF P G + V L
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 782 DRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEF 823
DRE + L A D + + +VI++ID NDN+PEF
Sbjct: 69 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 84.6 bits (210), Expect = 1e-19
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 830 FSVMENLPPDSFVGKLIATDKDVGRNAELSFALS------NAKGDFEIDSRNGFIKTMRS 883
++ EN F +L+ +N L ++++ G F I+ +G + +
Sbjct: 9 INLPENSRG-PFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 884 FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQF 932
DRE L A D ++++ + + + + D NDN P+F
Sbjct: 68 LDREL------IARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 80.8 bits (200), Expect = 2e-18
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 26/103 (25%)
Query: 357 ISLLENSAANTLVATLTASDHDQ-------------------------DSITGQLTVKTK 391
I+L ENS L + + I+GQL+V
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 392 LDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVF 434
LDRE I + L+ A D + + + + D+NDN P F
Sbjct: 68 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 74.2 bits (183), Expect = 4e-16
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 14/110 (12%)
Query: 513 TFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYG----DPKKKFEINDRTG 568
++ E+ G ++ S + ++Y++ P F IN +G
Sbjct: 8 PINLPENSR------GPFPQELVRIRSGRDKNL-SLRYSVTGPGADQPPTGIFIINPISG 60
Query: 569 EIITAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLDLNDNAPIF 615
++ LDRE + ++L A + I ++D+NDN P F
Sbjct: 61 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 71.1 bits (175), Expect = 6e-15
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 622 ITIPENAAVGQEIYVARARDRDSGVNSRIFYSLS-----SNPDDQFKIVETNGVIYLNKP 676
I +PEN+ G N + YS++ P F I +G + + KP
Sbjct: 9 INLPENS-RGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 677 I---QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVF 719
+ + A D + + + + + D+ND+ P F
Sbjct: 68 LDRELIA---RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 69.6 bits (171), Expect = 2e-14
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIF 84
L T LDRE + + L A D + + + ++D+NDN P F
Sbjct: 62 LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 65.4 bits (160), Expect = 7e-13
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 36/101 (35%)
Query: 196 VDENAINGSVVAAVSVVDPDEGLN-----------------------------------D 220
+ EN+ G + + N D
Sbjct: 11 LPENS-RGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 69
Query: 221 REHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVF 261
RE I +++L A D ++I+V D+ND+ P F
Sbjct: 70 RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 59.6 bits (145), Expect = 6e-11
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 20/94 (21%)
Query: 277 GSYVAGITATDEDTGVNAQIFYAFVSGNEHQ----WFEINPTSGLITTKT---------- 322
G + + N + Y+ Q F INP SG ++
Sbjct: 17 GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARF 76
Query: 323 ------RDGGPNPKWAYTQLKVSILDENDEKPQF 350
D N + ++++D ND +P+F
Sbjct: 77 HLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 54.2 bits (131), Expect = 5e-09
Identities = 13/108 (12%), Positives = 33/108 (30%), Gaps = 26/108 (24%)
Query: 93 VSLNESVLPGTKVLQVIATDNDQGDNAKITYYLS------ETERKFT--------NCQQ- 137
++L E+ G +++ + + N + Y ++ F + +
Sbjct: 9 INLPENS-RGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 138 ----QRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDANDHDPV 181
A D + + + +N++D ND+ P
Sbjct: 68 LDRELIA------RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPE 109
Score = 35.3 bits (82), Expect = 0.020
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 442 QIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESG 476
+PE+ G ++ KN + YS+
Sbjct: 10 NLPEN-SRGPFPQELVRIRSGRDKNLSLRYSVTGP 43
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 104 bits (262), Expect = 1e-26
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 935 TPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEH----FSIDEATGQIT 990
P ++ E S + ++ + D E + YK E F ++ TG++
Sbjct: 15 APVALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELN 73
Query: 991 ISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVK 1042
++ +LDRE F L A DA N + + I VLD NDN P+F +
Sbjct: 74 VTSILDREETPFFLLTGYALDARG---NNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 93.2 bits (232), Expect = 2e-22
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 1047 ISVYENTTVNTQLFHFQ-ATDSDIGVNNEVLFSI----GSGNKRDTFHMDPVTGILYLHK 1101
+++ E ++ + + +D ++ + + F + TG L +
Sbjct: 17 VALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTS 76
Query: 1102 KLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVEDCNDNPPSFP 1146
LD EE ++L A D + I V D NDN P F
Sbjct: 77 ILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFT 121
Score = 87.4 bits (217), Expect = 1e-20
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 742 VAKDSDLGNNGFVSYSII-EGNGEDKFGIF---PD-GFMYVRNSLDRETRDYYALTVLAE 796
+ D ++Y +G E FGIF D G + V + LDRE ++ LT A
Sbjct: 34 IHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYAL 93
Query: 797 DHGKYPRSSSVPVVIHIIDENDNKPEFS 824
D + + I ++D NDN+P F+
Sbjct: 94 DARGNNVEKPLELRIKVLDINDNEPVFT 121
Score = 80.5 bits (199), Expect = 5e-18
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 830 FSVMEN--LPPDSFVGKLIATDKDVGRNAELSFALS------NAKGDFEIDSRNGFIKTM 881
++ E L + + K I +D R ++++ + G F + G +
Sbjct: 17 VALREGEDLSKKNPIAK-IHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT 75
Query: 882 RSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQNDNSPQFLR 934
DRE F L D ++ +++ + + D NDN P F +
Sbjct: 76 SILDREE------TPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 79.3 bits (196), Expect = 1e-17
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 513 TFSILEDHDKMQENLGRDVGKIKIRNSDMQATID-QIKYAI----VYGDPKKKFEINDRT 567
++ E D + + KI SD+ +I Y + P F N T
Sbjct: 16 PVALREGED---LSKKNPIAKIH---SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDT 69
Query: 568 GEIITAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLDLNDNAPIFNRD 618
GE+ + LDREE + L A + I +LD+NDN P+F +D
Sbjct: 70 GELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQD 123
Score = 73.5 bits (181), Expect = 1e-15
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 380 DSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVF 434
+ TG+L V + LDRE + L A D + + + D+NDN PVF
Sbjct: 66 NKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 70.4 bits (173), Expect = 2e-14
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAH 86
L T LDRE F+ L A D L++ + +LD+NDN P+F
Sbjct: 72 LNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 68.5 bits (168), Expect = 6e-14
Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 622 ITIPENAAVGQEIYVARAR-DRDSGVNSRIFYSLS-----SNPDDQFKIVETNGVIYLNK 675
+ + E + ++ +A+ D +I Y + P F + G + +
Sbjct: 17 VALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTS 76
Query: 676 PI---QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVF 719
+ ++P + A D+ ++ + + + D+ND+ PVF
Sbjct: 77 ILDREETP---FFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 63.1 bits (154), Expect = 4e-12
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEK 263
DRE + LT A D L I V D+ND+EPVF +
Sbjct: 79 DREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 61.2 bits (149), Expect = 2e-11
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 272 ELAPAGSYVAGITATDEDTGVNAQIFYAF----VSGNEHQWFEINPTSGLITTKTR---- 323
E + +A I +D +I Y + ++ F N +G + +
Sbjct: 23 EDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE 81
Query: 324 ------------DGGPNPKWAYTQLKVSILDENDEKPQFTQN 353
D N +L++ +LD ND +P FTQ+
Sbjct: 82 ETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQD 123
Score = 54.3 bits (131), Expect = 7e-09
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 38/116 (32%)
Query: 91 YSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSETERKFTNCQQQRPGGSCPKSCVF 150
++ E + + ++ +D + KITY + G + P +F
Sbjct: 17 VALREGEDLSKKNPIAKI-HSDLAEERGLKITYKYT------------GKGITEPPFGIF 63
Query: 151 -------------------------TVFARDHGSPRQDGRTYVTVNLLDANDHDPV 181
T +A D + + + +LD ND++PV
Sbjct: 64 VFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPV 119
Score = 34.2 bits (79), Expect = 0.052
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 436 PSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIE 474
+ + ED I ++ + DL + ++TY
Sbjct: 14 TAPVALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYT 51
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor, lipoprotein,
membrane; 1.81A {Mus musculus}
Length = 100
Score = 94.0 bits (234), Expect = 4e-23
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 935 TPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKL 994
+P + ++ V +V D EG + K + + F I+E TG +++++
Sbjct: 6 SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT 65
Query: 995 LDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
LDRET++ + L V DA+ L + + V+D
Sbjct: 66 LDRETIATYQLYVETTDAS---GKTLEGPVPLEVIVID 100
Score = 86.3 bits (214), Expect = 2e-20
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 1047 ISVYENTTVN--TQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLD 1104
I + EN + +D G + + + TF ++ TG + + + LD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 1105 YEEINSYVLNVTASDGGTPRLSTIFMFTINVED 1137
E I +Y L V +D L + V D
Sbjct: 68 RETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 81.6 bits (202), Expect = 1e-18
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 730 ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRETRDY 788
+ P ++V D G+ ++ ++ + + F I + G + V +LDRET
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT 73
Query: 789 YALTVLAEDHGKYPRSSSVPVVIHIID 815
Y L V D VP+ + +ID
Sbjct: 74 YQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 70.5 bits (173), Expect = 8e-15
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 830 FSVMEN--LPPDSFVGKLIATDKDVGRNAELSFAL--SNAKGDFEIDSRNGFIKTMRSFD 885
+ EN P VGK++ +D+ G L+ + KG F I+ G + R+ D
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 886 RENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITD 924
RE L +D L+ V ++V + D
Sbjct: 68 RET------IATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 62.0 bits (151), Expect = 8e-12
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 514 FSILEDHDKMQENLGRDVGKIKIRNSDMQATID-QIKYAIVYGDPKKKFEINDRTGEIIT 572
I E+ + RDVGK+ +SD ++ V DPK F IN+ TG +
Sbjct: 8 ILIPENQR---QPFPRDVGKVV--DSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSV 62
Query: 573 AAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLD 607
LDRE + Y L V G + + ++D
Sbjct: 63 TRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 61.2 bits (149), Expect = 1e-11
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 23/93 (24%)
Query: 357 ISLLENSAAN--TLVATLTASDHDQ---------------------DSITGQLTVKTKLD 393
I + EN V + SD + + TG ++V LD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 394 RETITDYELKVIAKDHGTPPQSSTATVFLFIED 426
RETI Y+L V D + + + D
Sbjct: 68 RETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 60.1 bits (146), Expect = 4e-11
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 622 ITIPEN--AAVGQEIYVARARDRDSGVNSRIFYSL-SSNPDDQFKIVETNGVIYLNKPIQ 678
I IPEN +++ DR G R+ +P F+I E G + + + +
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 679 SPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
+T + + +D+ ++L + V + D
Sbjct: 68 RETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 57.8 bits (140), Expect = 2e-10
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 16/87 (18%)
Query: 272 ELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTR-------- 323
+ P V + +D G ++ V + F IN +G ++
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT 73
Query: 324 --------DGGPNPKWAYTQLKVSILD 342
D L+V ++D
Sbjct: 74 YQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 48.9 bits (117), Expect = 3e-07
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILD 76
+ T LDRET+ YQL + D T G + + V ++D
Sbjct: 60 VSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 44.7 bits (106), Expect = 9e-06
Identities = 18/92 (19%), Positives = 21/92 (22%), Gaps = 33/92 (35%)
Query: 195 TVDENAIN--GSVVAAVSVVDPDEGLN-------------------------------DR 221
+ EN V V D EG DR
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 222 EHINKYNLTIIATDKGNPPRTATAFLIIHVND 253
E I Y L + TD L + V D
Sbjct: 69 ETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 44.3 bits (105), Expect = 1e-05
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 21/99 (21%)
Query: 91 YSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYL--SETERKFT--------NCQQ--- 137
+ N+ V +V+ +D +G ++T + + F + +
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 138 --QRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLD 174
+ V D +G + V ++D
Sbjct: 68 RETIA------TYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 36.6 bits (85), Expect = 0.005
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 445 EDTQVGVSIVQVSAYDLDCGKNAQVTYSIESG 476
+ + +V D G ++T
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQ 45
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 92.4 bits (230), Expect = 1e-22
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 930 PQFLRTPYKVQISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEH----FSIDEA 985
P + E G + + +++ G V+Y I D F I+
Sbjct: 2 PLGSWVIPPISCPEN-EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 986 TGQITISKLLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLDE 1033
TG + +++ LDRE ++ + L A + N + + I V D+
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSNG---NAVEDPMEILITVTDQ 105
Score = 80.5 bits (199), Expect = 3e-18
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 5/105 (4%)
Query: 1037 APMFVKTESKISVYENTTVNTQLFHFQATDSDIGVNNEVLFSIGSGN----KRDTFHMDP 1092
P+ IS EN + S+ +V +SI F ++
Sbjct: 1 GPLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIER 59
Query: 1093 VTGILYLHKKLDYEEINSYVLNVTASDGGTPRLSTIFMFTINVED 1137
TG L + + LD E I +Y L A + I V D
Sbjct: 60 ETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 80.1 bits (198), Expect = 3e-18
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 717 PVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSII-EGNGEDKFGIF---PD 772
P+ S E+ LV S+ G V YSI +G G+F +
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 773 -GFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDE 816
G++ V LDRE Y L A + ++I + D+
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 105
Score = 67.4 bits (165), Expect = 9e-14
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 821 PEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALS------NAKGDFEIDSR 874
P S S EN F L+ + + ++ ++++ G F I+
Sbjct: 2 PLGSWVIPPISCPENEKG-PFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 875 NGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITDQ 925
G++K DRE +L + + ++D +++ + +TDQ
Sbjct: 61 TGWLKVTEPLDRER------IATYTLFSHAVSSNGNAVEDPMEILITVTDQ 105
Score = 60.5 bits (147), Expect = 3e-11
Identities = 19/104 (18%), Positives = 27/104 (25%), Gaps = 26/104 (25%)
Query: 348 PQFTQNVLNISLLENSAANTLVATLTASDHDQ-------------------------DSI 382
P + + IS EN L ++ +
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 383 TGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIED 426
TG L V LDRE I Y L A + + + D
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 58.5 bits (142), Expect = 1e-10
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 612 APIFNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQ-----FKIVE 666
P+ + I+ PEN + + ++FYS++ D F I
Sbjct: 1 GPLGSWVIPPISCPENEKGPFPKNLV-QIKSNKDKEGKVFYSITGQGADTPPVGVFIIER 59
Query: 667 TNGVIYLNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
G + + +P+ +T T+ A S ++ + + + D
Sbjct: 60 ETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 55.5 bits (134), Expect = 2e-09
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAI----VYGDPKKKFEINDRT 567
S E+ +++ +IK S+ ++ Y+I P F I T
Sbjct: 9 PPISCPENEK---GPFPKNLVQIK---SNKDKEG-KVFYSITGQGADTPPVGVFIIERET 61
Query: 568 GEIITAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLD 607
G + LDRE + Y L A S + IT+ D
Sbjct: 62 GWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 50.1 bits (120), Expect = 1e-07
Identities = 10/105 (9%), Positives = 25/105 (23%), Gaps = 21/105 (20%)
Query: 259 PVFEKSEYSAVLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQW----FEINPT 314
P+ E G + + + ++FY+ F I
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 315 SGLITTKT----------------RDGGPNPKWAYTQLKVSILDE 343
+G + N ++ +++ D+
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 105
Score = 48.9 bits (117), Expect = 3e-07
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILD 76
L+ T LDRE + Y L A +++ +T+ D
Sbjct: 64 LKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 44.3 bits (105), Expect = 1e-05
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 220 DREHINKYNLTIIATDKGNPPRTATAFLIIHVND 253
DRE I Y L A ++I V D
Sbjct: 71 DRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 42.4 bits (100), Expect = 6e-05
Identities = 13/118 (11%), Positives = 28/118 (23%), Gaps = 40/118 (33%)
Query: 82 PIFAHSVSDYSVSLNESVLPGTKVLQVIATDNDQGDNAKITYYLSETERKFTNCQQQRPG 141
P+ + + S NE G ++ +++ K+ Y ++ G
Sbjct: 2 PLGSWVIPPISCPENE---KGPFPKNLVQIKSNKDKEGKVFYSITG------------QG 46
Query: 142 GSCPKSCVF-------------------------TVFARDHGSPRQDGRTYVTVNLLD 174
P VF A + + + + D
Sbjct: 47 ADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 32.0 bits (73), Expect = 0.24
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 432 PVFYPSQYFKQIPE--DTQVGVSIVQVSAYDLDCGKNAQVTYSIESG 476
P+ PE ++VQ+ + + K +V YSI
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKS---NKDKEGKVFYSITGQ 45
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 87.4 bits (217), Expect = 8e-21
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 1047 ISVYENTTVN--TQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLD 1104
IS+ EN + + +D G ++ + F ++ +G + + K LD
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD 66
Query: 1105 YEEINSYVLNVTASDGGTPRLSTIFMFTINVED 1137
E I SY L V +D + I V D
Sbjct: 67 REAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 86.6 bits (215), Expect = 1e-20
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 939 VQISE--GASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLD 996
+ I E V RV D G +Y K + F I+E +G+++++K LD
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD 66
Query: 997 RETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
RE + + L+V D + + I V+D
Sbjct: 67 REAIPSYQLQVETTDEN---GKTIEGPVDLEILVID 99
Score = 78.2 bits (193), Expect = 2e-17
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 727 SLLEST--PVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDR 783
S+ E+ P +V D G+ + ++ + F I + G + V +LDR
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDR 67
Query: 784 ETRDYYALTVLAEDHGKYPRSSSVPVVIHIID 815
E Y L V D V + I +ID
Sbjct: 68 EAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 68.5 bits (168), Expect = 3e-14
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 830 FSVMENL--PPDSFVGKLIATDKDVGRNAELSFAL--SNAKGDFEIDSRNGFIKTMRSFD 885
S+ EN P VG+++ +D+ G +L KG F+I+ +G + ++ D
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD 66
Query: 886 RENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITD 924
RE L+ +D ++ V +++ + D
Sbjct: 67 REA------IPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 63.5 bits (155), Expect = 2e-12
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 23/94 (24%)
Query: 356 NISLLENSAAN--TLVATLTASDHDQ---------------------DSITGQLTVKTKL 392
+IS+ EN +V + SD + +G+++V L
Sbjct: 6 SISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKAL 65
Query: 393 DRETITDYELKVIAKDHGTPPQSSTATVFLFIED 426
DRE I Y+L+V D + + + D
Sbjct: 66 DREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 61.6 bits (150), Expect = 1e-11
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEII 571
+ SI E+ + VG++ + + + I ++ V +PK F+IN+ +GE+
Sbjct: 5 PSISIPENQR---IPFPKIVGRVVVSDRIPGSKI-KLYGKGVDQEPKGIFKINENSGEVS 60
Query: 572 TAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLD 607
LDRE Y L V G + I ++D
Sbjct: 61 VTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 60.1 bits (146), Expect = 4e-11
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 622 ITIPENAA--VGQEIYVARARDRDSGVNSRIFYSL-SSNPDDQFKIVETNGVIYLNKPIQ 678
I+IPEN + + DR G +++ P FKI E +G + + K +
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD 66
Query: 679 SPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
+ +++ +D +++ + + + D
Sbjct: 67 REAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 54.7 bits (132), Expect = 2e-09
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 16/88 (18%)
Query: 271 SELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTR------- 323
++ P V + +D G +++ V F+IN SG ++
Sbjct: 12 NQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIP 71
Query: 324 ---------DGGPNPKWAYTQLKVSILD 342
D L++ ++D
Sbjct: 72 SYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 49.3 bits (118), Expect = 2e-07
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILD 76
+ T LDRE + YQL + D T G + + + ++D
Sbjct: 59 VSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 46.6 bits (111), Expect = 2e-06
Identities = 19/92 (20%), Positives = 24/92 (26%), Gaps = 33/92 (35%)
Query: 195 TVDENAIN--GSVVAAVSVVDPDEGLN-------------------------------DR 221
++ EN +V V V D G DR
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDR 67
Query: 222 EHINKYNLTIIATDKGNPPRTATAFLIIHVND 253
E I Y L + TD+ L I V D
Sbjct: 68 EAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 42.0 bits (99), Expect = 7e-05
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 21/98 (21%)
Query: 92 SVSLNESVLPGTKVLQVIATDNDQGDNAKITYYL--SETERKFT--------NCQQ---- 137
S+ N+ + V +V+ +D G K+ E + F + +
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDR 67
Query: 138 -QRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLD 174
P S V D +G + + ++D
Sbjct: 68 EAIP------SYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 35.0 bits (81), Expect = 0.019
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 442 QIPEDTQ--VGVSIVQVSAYDLDCGKNAQVTYSIESG 476
IPE+ + + +V D G ++
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQ 44
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 86.3 bits (214), Expect = 2e-20
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 941 ISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV 1000
+ E D D G +G + Y + F+ID+ TG I + LDRE
Sbjct: 11 LEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREER 69
Query: 1001 SKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
S++ L+ A D T + + I + D
Sbjct: 70 SQYTLRAQALDRRT--GRPMEPESEFIIKIQD 99
Score = 80.5 bits (199), Expect = 2e-18
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 1047 ISVYENTT-VNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDY 1105
V E T + +D D G + + + + F +D TG ++ ++LD
Sbjct: 8 FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDR 66
Query: 1106 EEINSYVLNVTASDGGTPR-LSTIFMFTINVED 1137
EE + Y L A D T R + F I ++D
Sbjct: 67 EERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 70.5 bits (173), Expect = 7e-15
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 730 ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRETRDY 788
E T + + + D D G+ G + Y + F I G ++ LDRE R
Sbjct: 13 EYTGTDPLYVGKLHSDMDRGD-GSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQ 71
Query: 789 YALTVLAEDHGKY-PRSSSVPVVIHIID 815
Y L A D P +I I D
Sbjct: 72 YTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 62.0 bits (151), Expect = 7e-12
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 513 TFSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIIT 572
F +LE E G D + +SDM IKY + F I+D TG+I
Sbjct: 7 QFFVLE------EYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHA 60
Query: 573 AAKLDREEQSIYNLVVSARSRLSY----GKTFVNITLLD 607
+LDREE+S Y L A R + ++ I + D
Sbjct: 61 IQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 58.6 bits (142), Expect = 1e-10
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 830 FSVMENL-PPDSFVGKLIATDKDVGRNAELSFALS--NAKGDFEIDSRNGFIKTMRSFDR 886
F V+E D + +D D G + + + LS A F ID G I ++ DR
Sbjct: 8 FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDR 66
Query: 887 ENLLQTTGQNFISLEATVSDNGSPR-LKDKVKVDVYITD 924
E ++ +L A D + R ++ + + + I D
Sbjct: 67 EE------RSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 57.0 bits (138), Expect = 4e-10
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 22/92 (23%)
Query: 357 ISLLENSAA-NTLVATLTASDHDQ--------------------DSITGQLTVKTKLDRE 395
+LE + L SD D+ D TG + +LDRE
Sbjct: 8 FFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDRE 67
Query: 396 TITDYELKVIAKDHGT-PPQSSTATVFLFIED 426
+ Y L+ A D T P + + I+D
Sbjct: 68 ERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 48.9 bits (117), Expect = 3e-07
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 622 ITIPEN-AAVGQEIYVARARDRDSGVNSRIFYSLSS-NPDDQFKIVETNGVIYLNKPIQS 679
+ E D D G + I Y LS F I +T G I+ + +
Sbjct: 8 FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDR 66
Query: 680 PPGSTLTIEIVASDSG-KQSLSSKHSVNVYIQD 711
S T+ A D + + + + IQD
Sbjct: 67 EERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 48.9 bits (117), Expect = 3e-07
Identities = 18/91 (19%), Positives = 25/91 (27%), Gaps = 18/91 (19%)
Query: 269 VLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTR----- 323
VL E G +D D G + I Y F I+ T+G I R
Sbjct: 10 VLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREE 68
Query: 324 ------------DGGPNPKWAYTQLKVSILD 342
P ++ + I D
Sbjct: 69 RSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 42.8 bits (101), Expect = 3e-05
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPT-RYGYLQVNVTILD 76
+ +LDRE Y L A D T + + I D
Sbjct: 58 IHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 41.6 bits (98), Expect = 1e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 220 DREHINKYNLTIIATDKG-NPPRTATAFLIIHVND 253
DRE ++Y L A D+ P + II + D
Sbjct: 65 DREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 35.8 bits (83), Expect = 0.012
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 97 ESVLPGTKVLQVIATDNDQGDNAKITYYLS 126
E + + +D D+G + I Y LS
Sbjct: 13 EYTGTDPLYVGKLHSDMDRG-DGSIKYILS 41
Score = 32.4 bits (74), Expect = 0.17
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 445 EDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE 478
E T V D+D G + + Y +
Sbjct: 13 EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGA 45
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 85.6 bits (212), Expect = 3e-20
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 936 PYKVQISEGA--SIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISK 993
+ I E V +V + EG + K + + F I+E +G +++++
Sbjct: 4 ATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTR 63
Query: 994 LLDRETVSKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
LDRE ++ + L+V D + + + I V+D
Sbjct: 64 PLDREAIANYELEVEVTDLS---GKIIDGPVRLDISVID 99
Score = 83.2 bits (206), Expect = 2e-19
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 1047 ISVYEN--TTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLD 1104
I + EN + ++ G + + + F ++ ++G + + + LD
Sbjct: 7 ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLD 66
Query: 1105 YEEINSYVLNVTASDGGTPRLSTIFMFTINVED 1137
E I +Y L V +D + I+V D
Sbjct: 67 REAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 77.8 bits (192), Expect = 2e-17
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 721 MSSYETSLLE--STPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYV 777
+ + + E P +++ + G +S ++ + + F I G + V
Sbjct: 2 ILATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSV 61
Query: 778 RNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIID 815
LDRE Y L V D V + I +ID
Sbjct: 62 TRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 63.6 bits (155), Expect = 2e-12
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 830 FSVMENLPP--DSFVGKLIATDKDVGRNAELS--FALSNAKGDFEIDSRNGFIKTMRSFD 885
+ EN P VGK+I ++ G LS + KG F I+ +G + R D
Sbjct: 7 ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLD 66
Query: 886 RENLLQTTGQNFISLEATVSDNGSPRLKDKVKVDVYITD 924
RE LE V+D + V++D+ + D
Sbjct: 67 REA------IANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 60.5 bits (147), Expect = 2e-11
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 512 YTFSILEDHDKMQENLGRDVGKIKIRNSDMQATID-QIKYAIVYGDPKKKFEINDRTGEI 570
I E+ R VGK+ S+ ++ V DPK F IN+ +G++
Sbjct: 5 TPILIPENQR---PPFPRSVGKVI--RSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDV 59
Query: 571 ITAAKLDREEQSIYNLVVSARSRLSY---GKTFVNITLLD 607
LDRE + Y L V G ++I+++D
Sbjct: 60 SVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 59.7 bits (145), Expect = 5e-11
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 622 ITIPENAA--VGQEIYVARARDRDSGVNSRIFYSL-SSNPDDQFKIVETNGVIYLNKPIQ 678
I IPEN + + + G R+ +P F+I E +G + + +P+
Sbjct: 7 ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLD 66
Query: 679 SPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQD 711
+ +E+ +D + + +++ + D
Sbjct: 67 REAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 57.4 bits (139), Expect = 3e-10
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 23/93 (24%)
Query: 357 ISLLENSAAN--TLVATLTASDHDQ---------------------DSITGQLTVKTKLD 393
I + EN V + S+ + + I+G ++V LD
Sbjct: 7 ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLD 66
Query: 394 RETITDYELKVIAKDHGTPPQSSTATVFLFIED 426
RE I +YEL+V D + + + D
Sbjct: 67 REAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 51.3 bits (123), Expect = 4e-08
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 16/84 (19%)
Query: 275 PAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITT-------------- 320
P V + ++ G ++ V + F IN SG ++
Sbjct: 16 PFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYEL 75
Query: 321 --KTRDGGPNPKWAYTQLKVSILD 342
+ D +L +S++D
Sbjct: 76 EVEVTDLSGKIIDGPVRLDISVID 99
Score = 46.6 bits (111), Expect = 2e-06
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGTPTRYGYLQVNVTILD 76
+ T LDRE + Y+L + D G ++++++++D
Sbjct: 59 VSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 44.3 bits (105), Expect = 1e-05
Identities = 18/92 (19%), Positives = 21/92 (22%), Gaps = 33/92 (35%)
Query: 195 TVDENAIN--GSVVAAVSVVDPDEGLN-------------------------------DR 221
+ EN V V + EG DR
Sbjct: 8 LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDR 67
Query: 222 EHINKYNLTIIATDKGNPPRTATAFLIIHVND 253
E I Y L + TD L I V D
Sbjct: 68 EAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 40.5 bits (95), Expect = 2e-04
Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 17/102 (16%)
Query: 87 SVSDYSVSLNESVLP--GTKVLQVIATDNDQGDNAKITYYLSETERK------------F 132
S+ + + E+ P V +VI ++ +G +++ + + K
Sbjct: 1 SILATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVS 60
Query: 133 TNCQQQRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLD 174
R + V D DG + ++++D
Sbjct: 61 VTRPLDR---EAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 30.5 bits (69), Expect = 0.69
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 443 IPEDTQ--VGVSIVQVSAYDLDCGKNAQVTYSIESG 476
IPE+ + S+ +V + G +++
Sbjct: 9 IPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQ 44
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 83.2 bits (206), Expect = 2e-19
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 941 ISEGASIGTQVFRVSTMDADEGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLDRETV 1000
+ E + + D D G + + Y + F I++ TG I K LDRE
Sbjct: 10 LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEK 68
Query: 1001 SKFNLKVLARDAATVVSNQLSSTTMVTIDVLD 1032
+++ L A D T + L + I V D
Sbjct: 69 AEYTLTAQAVDFET--NKPLEPPSEFIIKVQD 98
Score = 72.5 bits (178), Expect = 1e-15
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 1047 ISVYEN-TTVNTQLFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDY 1105
+ V E + L TD D G + ++ + + F ++ +TG ++ K+LD
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDR 65
Query: 1106 EEINSYVLNVTASDGGT-PRLSTIFMFTINVED 1137
EE Y L A D T L F I V+D
Sbjct: 66 EEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 66.3 bits (162), Expect = 2e-13
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 730 ESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPD-GFMYVRNSLDRETRDY 788
E + + D D G+ + Y + F I G ++ LDRE +
Sbjct: 12 EFSGPEPILVGRLHTDLDPGSKK-IKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAE 70
Query: 789 YALTVLAEDH-GKYPRSSSVPVVIHIID 815
Y LT A D P +I + D
Sbjct: 71 YTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 60.5 bits (147), Expect = 2e-11
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 514 FSILEDHDKMQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITA 573
+LE E G + + ++D+ +IKY + F+IND TG+I
Sbjct: 7 MFVLE------EFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAI 60
Query: 574 AKLDREEQSIYNLVVSARSRLSY----GKTFVNITLLD 607
+LDREE++ Y L A + + I + D
Sbjct: 61 KRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 53.6 bits (129), Expect = 6e-09
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 830 FSVMENL-PPDSFVGKLIATDKDVGRNAELSFALS--NAKGDFEIDSRNGFIKTMRSFDR 886
V+E P+ + + TD D G + ++ + LS A F+I+ G I ++ DR
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDR 65
Query: 887 ENLLQTTGQNFISLEATVSD-NGSPRLKDKVKVDVYITD 924
E + +L A D + L+ + + + D
Sbjct: 66 EE------KAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 52.8 bits (127), Expect = 1e-08
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 22/92 (23%)
Query: 357 ISLLENSAA-NTLVATLTASDHDQ--------------------DSITGQLTVKTKLDRE 395
+ +LE + ++ +D D + ITG + +LDRE
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE 66
Query: 396 TITDYELKVIAKDHGT-PPQSSTATVFLFIED 426
+Y L A D T P + + ++D
Sbjct: 67 EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 48.2 bits (115), Expect = 5e-07
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 622 ITIPENAAVGQEIYVAR-ARDRDSGVNSRIFYSLSS-NPDDQFKIVETNGVIYLNKPIQS 679
+ + E + + I V R D D G + +I Y LS F+I + G I+ K +
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDR 65
Query: 680 PPGSTLTIEIVASDS-GKQSLSSKHSVNVYIQD 711
+ T+ A D + L + +QD
Sbjct: 66 EEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 43.2 bits (102), Expect = 2e-05
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 18/91 (19%)
Query: 269 VLSELAPAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTR----- 323
VL E + + G TD D G + +I Y F+IN +G I R
Sbjct: 9 VLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE 67
Query: 324 ------------DGGPNPKWAYTQLKVSILD 342
P ++ + + D
Sbjct: 68 KAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 41.6 bits (98), Expect = 9e-05
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 220 DREHINKYNLTIIATDK-GNPPRTATAFLIIHVND 253
DRE +Y LT A D N P + II V D
Sbjct: 64 DREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 40.9 bits (96), Expect = 2e-04
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 36 LQTTGKLDRETVDFYQLNISARDGGT-PTRYGYLQVNVTILD 76
+ +LDRE Y L A D T + + + D
Sbjct: 57 IHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 32.4 bits (74), Expect = 0.19
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 97 ESVLPGTKVLQVIATDNDQGDNAKITYYLS 126
E P ++ + TD D G + KI Y LS
Sbjct: 12 EFSGPEPILVGRLHTDLDPG-SKKIKYILS 40
Score = 28.2 bits (63), Expect = 5.5
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 445 EDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSE 478
E + +V DLD G + ++ Y +
Sbjct: 12 EFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.7 bits (185), Expect = 7e-14
Identities = 91/569 (15%), Positives = 185/569 (32%), Gaps = 133/569 (23%)
Query: 693 DSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAKDSDLGNNG 752
++G+ K ++V+ D+ D+ S+L +++ + D +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-----IIMSKDAVSGT 64
Query: 753 FVSYSIIEGNGEDKFGIFPDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIH 812
+ + E+ F V L +Y L R S+ ++
Sbjct: 65 LRLFWTLLSKQEEMVQKF------VEEVLRI---NY---KFLMSPIKTEQRQPSMMTRMY 112
Query: 813 IIDENDNKPEFSNSSFV-FSV------------MENLPPDSFV--------GK--LIATD 849
I E ++ N F ++V + L P V GK +
Sbjct: 113 I--EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-- 168
Query: 850 KDVGRNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGS 909
DV + ++ + DF+I F +++ + + Q L + N +
Sbjct: 169 -DVCLSYKVQCKM-----DFKI-----FWLNLKNCNSPETVLEMLQK---LLYQIDPNWT 214
Query: 910 PRLKDKVKVDVYITDQNDNSPQFLRT-PYK--------VQISEGA---SIGTQVFRVSTM 957
R + + I + L++ PY+ VQ ++ ++ ++ ++T
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTR 273
Query: 958 DAD--EGLNGDVYYKIISGNDDEHFSIDEATGQITISKLLD-------RE--TVSKFNLK 1006
+ L+ I + + DE + K LD RE T + L
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLS 331
Query: 1007 VLA---RDAA-------TVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISVY-ENTTV 1055
++A RD V ++L++ +++VL+ + MF ++SV+ + +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPSAHI 387
Query: 1056 NTQLF-----HFQATDSDIGVNNEVLFS-IGSGNKRDTF-----HMD---PVTGILYLHK 1101
T L +D + VN +S + K T +++ + LH+
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 1102 KLDYEEINSYVLNVT--ASDGGTPRLSTIFMFTI--------NVEDCNDNPPSFPNTAIV 1151
+ ++ Y + T + D P L F I + E F + +
Sbjct: 448 SI----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 1152 RQ-IRE-----NIPINTINVPITFKKLKK 1174
Q IR N + +N K K
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Score = 63.3 bits (153), Expect = 5e-10
Identities = 101/672 (15%), Positives = 190/672 (28%), Gaps = 192/672 (28%)
Query: 1 MKCRTVDHSVQVSDTL-------------QNSKAKVTANPSGETSYLYLQTT-GKLDRET 46
+ +DH + D + Q + +Y +L + R+
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 47 VDFYQLNISARDGGTPTRYGYLQVNVTILDVNDNPPIFAHSVSDYSVSLNESVLPGTKVL 106
++ I RD L NDN + Y+VS + L + L
Sbjct: 106 SMMTRMYIEQRD--------RLY--------NDNQVF-----AKYNVSRLQPYLKLRQAL 144
Query: 107 QVIATDNDQGDNAKITYYLSETERKFTNCQQQRPG-GSCPKSCVFTVFARDHG-SPRQDG 164
+ + G K+ V + + D
Sbjct: 145 L-----ELR-PAKNVLID----------------GVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 165 RTY-VTVNLLDANDHDPVIKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLNDREH 223
+ + + + + N + V++ +D N + S D + R H
Sbjct: 183 KIFWLNLK--NCNSPETVLE----MLQKLLYQIDPNWTSRS--------DHSSNIKLRIH 228
Query: 224 INKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPV--FEKSEYSAVLSELAPAGSYVA 281
+ L + K L++ +V + + F S +L
Sbjct: 229 SIQAELRRLLKSKPYE----NCLLVL--LNVQNAKAWNAFNLS--CKIL----------- 269
Query: 282 GITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTRDGGPNPKWAYTQLKVSIL 341
+T Q+ + + + L + + LK
Sbjct: 270 -LTTRF------KQVTDFLSAATTTHISLDHHSMTLTPDEVKS---------LLLKYLDC 313
Query: 342 DENDEKPQFTQNVLNISLLENSAANTLVATLTASDHD--------QDSITGQLTVKTKLD 393
D + VL + ++ + S D + +LT +
Sbjct: 314 RPQDLPRE----VLTTNPR-------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 394 RETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPVFYPSQ-----YFKQIPEDTQ 448
+ E + + + +F + P+ +F I D
Sbjct: 363 LNVLEPAEYRKMFDR-----------LSVFPPSAH------IPTILLSLIWFDVIKSDVM 405
Query: 449 VGVSIVQVSAYDLDCGKNAQVTYSIESG--SEAVDGGNRKATENAIVE---IIKNSMVET 503
V V+ ++ Y L + + T SI S V N A +IV+ I K +
Sbjct: 406 VVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 504 LEFEHYNGYTFSILEDHDKMQENLGR---------DVG--KIKIRNS--------DMQAT 544
L + + Y +S + H K E+ R D + KIR+ + T
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 545 IDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSARSRLSYGKTFVNIT 604
+ Q+K+ Y K ND E + A LD + NL+ S + L + I
Sbjct: 524 LQQLKF---Y---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL------LRIA 571
Query: 605 LLDLNDNAPIFN 616
L + ++ IF
Sbjct: 572 L--MAEDEAIFE 581
Score = 55.6 bits (133), Expect = 1e-07
Identities = 87/621 (14%), Positives = 190/621 (30%), Gaps = 173/621 (27%)
Query: 481 DGGNRKATENAIVEIIKNSMVETLEFEHYNGYTFSILEDHDKMQENLGRDVGKIKIRNSD 540
+ G + I+ + +++ V+ + + SIL ++ I +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK---------EEIDHIIMSKDA 60
Query: 541 MQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREEQSIYNLVVSA---RSRLSYG 597
+ T + F E + ++ + Y ++S R
Sbjct: 61 VSGT-----LRL--------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 598 KTFVNITLLD--LNDNAPIF-----NRDKDEITI--------PENAAVGQEIY------- 635
T + I D NDN +F +R + + + P + I
Sbjct: 108 MTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVLGSGK 163
Query: 636 ------VARARDRDSGVNSRIFY-SLSS--NPDDQFKIVETNGVIY--LNKPIQSPPGST 684
V + ++ +IF+ +L + +P+ ++++ + ++ S +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHS 220
Query: 685 LTIEIVASDSGKQSLS----SKHSVNVYI--QDVND--HTPVFD---------------- 720
I++ S + L SK N + +V + F+
Sbjct: 221 SNIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 721 -MSSYETSLLESTPVNNRF-----FELVAK-----DSDL-----GNNGFVSYSIIEGNGE 764
+S+ T+ + + L+ K DL N SII +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIR 338
Query: 765 DKFGIFPDGFMYVR------------NSLD-RETRDYY-ALTVLAEDHGKYPRSSSVPV- 809
D + D + +V N L+ E R + L+V P S+ +P
Sbjct: 339 DGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-------PPSAHIPTI 390
Query: 810 VIHII---DENDNKPEFSNSSFVFSVMENLPPDSFVG-------KLIATDKDVGRNAEL- 858
++ +I + N +S++E P +S + + + + + +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 859 ---SFALSNAKGDFEIDSRNGFI--------KTMRSFDRENLLQTTGQNFISLEATVSDN 907
+ + D + + K + +R L + +F LE + +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 908 GSPR---------LKDKVKVDVYITDQNDNSPQ--------FLRTPYKVQISEGASIGTQ 950
+ L+ YI D ND + FL + I S T
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICD-NDPKYERLVNAILDFLPKIEENLIC---SKYTD 566
Query: 951 VFRVSTMDADEGLNGDVYYKI 971
+ R++ M DE + + + ++
Sbjct: 567 LLRIALMAEDEAIFEEAHKQV 587
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 55.3 bits (134), Expect = 3e-09
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 830 FSVMENLPPDSFVGKLIATDKDVGRN-AELS-----FALSNAKGDFEIDSRNGFIKTMRS 883
+SV+E S VG L KD+G + EL K +++ ++G +
Sbjct: 15 YSVLEETDRGSLVGNLA---KDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEK 71
Query: 884 FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVK---VDVYITDQNDNSPQFLRTPYKVQ 940
DRE L +T + + + K V+ ++ + D ND++P+F+
Sbjct: 72 LDREELCGSTNPCILHFQVLL--------KSPVQFIQGEIQLQDVNDHAPEFMEDESGPS 123
Query: 941 I 941
Sbjct: 124 S 124
Score = 50.7 bits (122), Expect = 1e-07
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 21/105 (20%)
Query: 527 LGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREE---QS- 582
LG + ++ R I+ K+ ++ ++G ++ KLDREE +
Sbjct: 34 LGLSLRELITR-----------GAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTN 82
Query: 583 --IYNLVVSARSRLSYGKTF-VNITLLDLNDNAPIFNRDKDEITI 624
I + V +S + + I L D+ND+AP F D+ +
Sbjct: 83 PCILHFQVLLKSPV---QFIQGEIQLQDVNDHAPEFMEDESGPSS 124
Score = 49.2 bits (118), Expect = 3e-07
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 1077 FSIGSGNKRDTFHMDPVTGILYLHKKLDYEEI----NSYVLNVTASDGGTPRLSTIFMFT 1132
I S + ++ +G L L +KLD EE+ N +L+ +
Sbjct: 46 AQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKSPVQ---FIQGE 102
Query: 1133 INVEDCNDNPPSFPN 1147
I ++D ND+ P F
Sbjct: 103 IQLQDVNDHAPEFME 117
Score = 49.2 bits (118), Expect = 4e-07
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 21/120 (17%)
Query: 940 QISEGASIGTQVFRVSTMDADEGLN----GDVYYKIISGNDDEHFSIDEATGQITISKLL 995
+ E G+ V ++ D GL+ +I+S + + +++ +G + + + L
Sbjct: 16 SVLEETDRGSLVGNLA---KDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKL 72
Query: 996 DRETVSK------FNLKVLARDAATVVSNQLSSTTMVTIDVLDENDNAPMFVKTESKISV 1049
DRE + + +VL + + I + D ND+AP F++ ES S
Sbjct: 73 DREELCGSTNPCILHFQVLLKSPVQFIQ--------GEIQLQDVNDHAPEFMEDESGPSS 124
Score = 39.2 bits (92), Expect = 0.001
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 623 TIPENAAVGQEIYVAR-ARDRDSGVN---SRIFYSLSSNPDDQFKIVETNGVIYLNKPI- 677
++ E G V A+D + +R LS ++ + +G + L + +
Sbjct: 16 SVLEETDRG--SLVGNLAKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLD 73
Query: 678 ------QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDHTPVFDMSSYETSL 728
+ P L +++ + + +QDVNDH P F E+
Sbjct: 74 REELCGSTNP-CILHFQVLLKSPVQF-----IQGEIQLQDVNDHAPEF--MEDESGP 122
Score = 38.8 bits (91), Expect = 0.002
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 380 DSITGQLTVKTKLDRETITDY------ELKVIAKDHGTPPQSSTATVFLFIEDVNDNNPV 433
+ +G L +K KLDRE + +V+ K P Q + ++DVND+ P
Sbjct: 60 EQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKS---PVQFIQGEIQ--LQDVNDHAPE 114
Query: 434 F 434
F
Sbjct: 115 F 115
Score = 34.5 bits (80), Expect = 0.055
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 742 VAKDSDLGNNGFVSYS--IIEGNGEDKFGIFP-DGFMYVRNSLDRE----TRDYYALT-- 792
+AKD L ++ I+ + + G + ++ LDRE + + L
Sbjct: 30 LAKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQ 89
Query: 793 VLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNS 826
VL + ++ + I + D ND+ PEF
Sbjct: 90 VLLKSPVQF-----IQGEIQLQDVNDHAPEFMED 118
Score = 33.0 bits (76), Expect = 0.15
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 69 QVNVTILDVNDNPPIF 84
Q + + DVND+ P F
Sbjct: 100 QGEIQLQDVNDHAPEF 115
Score = 32.2 bits (74), Expect = 0.34
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 28/116 (24%)
Query: 266 YSAVLSELAPAGSYVAGITATDEDTGVNAQIFYA----FVSGNEHQWFEINPTSGLITTK 321
YS + E GS V + +D G++ + +S Q ++ SG + K
Sbjct: 15 YS--VLEETDRGSLVGNLA---KDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLK 69
Query: 322 TR--------DGGP----------NPKWAYTQLKVSILDENDEKPQFTQNVLNISL 359
+ P +P Q ++ + D ND P+F ++ S
Sbjct: 70 EKLDREELCGSTNPCILHFQVLLKSPVQFI-QGEIQLQDVNDHAPEFMEDESGPSS 124
Score = 31.1 bits (71), Expect = 0.71
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 249 IHVNDVNDHEPVFEKSEYS 267
I + DVNDH P F + E
Sbjct: 103 IQLQDVNDHAPEFMEDESG 121
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 7e-09
Identities = 111/690 (16%), Positives = 199/690 (28%), Gaps = 269/690 (38%)
Query: 273 LAPAGSYVAGITATDEDTGVNAQIFYA--------FVSGNEHQWFEINPTS--------- 315
L P S+ ++ F F + +E PT+
Sbjct: 21 LVPTASFFIASQLQEQ--------FNKILPEPTEGFAADDE-------PTTPAELVGKFL 65
Query: 316 GLITTKTRDGGPNPKWAYTQLKVSILDENDEKPQFTQNVL---NISLLENSAANTLVATL 372
G +++ P+ + Q+ L E F L +I + L A L
Sbjct: 66 GYVSSLVE---PSKVGQFDQVLNLCLTE------FENCYLEGNDI--------HALAAKL 108
Query: 373 TASDHDQDSITGQLTVKTKLDRETITDYELKVIAKDHGTPPQSSTATVFLFIEDVNDNNP 432
++D + + +K +++AK +S LF V + N
Sbjct: 109 L-QENDTTLVKTKELIKNY--------ITARIMAKRPFDKKSNSA----LF-RAVGEGNA 154
Query: 433 VFY--------PSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSEAVDGGN 484
YF+++ + Y TY
Sbjct: 155 QLVAIFGGQGNTDDYFEELRD------------LYQ---------TY------------- 180
Query: 485 RKATENAIVEIIKNSMVETLEFEHYNGYTFSILEDHDKMQENL--GRDVGKIKIRNSDMQ 542
+ +V + ETL ++ ++ G ++ + + N
Sbjct: 181 -----HVLVGDLIKFSAETLS---------ELIRTTLDAEKVFTQGLNILEW-LENPSNT 225
Query: 543 ATID---------------QI-KYAI---VYG-DPKKKFEINDR----TG---EIITA-- 573
D Q+ Y + + G P E+ TG ++TA
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG---ELRSYLKGATGHSQGLVTAVA 282
Query: 574 -AKLDREEQSIYNLVVSA---------RSRLSYGKTFVNITLL----DLNDNAP-----I 614
A+ D +S + V A R +Y T + ++L + N+ P I
Sbjct: 283 IAETD-SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 615 FNRDKDEITIPENAAVGQEIYVARARDRDSGVNSRIFYSLSSNPDDQFKIVETNGVIYLN 674
N ++++ + YV + ++ SL N +V + G
Sbjct: 342 SNLTQEQV----------QDYVNKTNSHLPA-GKQVEISLV-NGAKNL-VV-S-G----- 381
Query: 675 KPIQSPPGSTLTIEIVASDSGK-QSLSSKHS------VNVYIQDVNDHTPVFDMSSYETS 727
P QS G LT+ + SG QS S N ++ PV S + +
Sbjct: 382 -PPQSLYGLNLTLRKAKAPSGLDQS-RIPFSERKLKFSNRFL-------PVA--SPFHSH 430
Query: 728 LLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPDGFMYVRNSLDRETRD 787
LL P ++ + DL N + N +D I P V + T D
Sbjct: 431 LLV--PASDLINK------DLVKNN------VSFNAKD-IQI-P-----VYD-----TFD 464
Query: 788 YYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKP-------EFSNSSFV-F-----SVME 834
G R S + I+D P +F + + F S +
Sbjct: 465 -----------GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 835 NLPPDSFVGK----LIATDKDVGRNAELSF 860
L + G ++A D+ + + F
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 52.0 bits (124), Expect = 1e-06
Identities = 90/550 (16%), Positives = 149/550 (27%), Gaps = 191/550 (34%)
Query: 588 VSARS-RLSYGKT----------FVNITLL------DLNDNAPIFNRDKDEITIPENAA- 629
S R LS+G F + L L + F D + T E
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 630 -VGQEIYVARARDRDS-GVNSRI-------FYS--LSSN----------PDDQFKIVETN 668
+G YV+ + G ++ F + L N ++ +V+T
Sbjct: 64 FLG---YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 669 GVI--Y------LNKPIQSPPGSTLTIEIVASDSGKQSLSSKHSVNVYI----QDVNDHT 716
+I Y +P S L A G + Q D
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSAL---FRAVGEGN--------AQLVAIFGGQGNTDDY 169
Query: 717 PVFD-MSS-YETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPDGF 774
F+ + Y+T + + A+ L + + D +F G
Sbjct: 170 --FEELRDLYQT----YHVLVGDLIKFSAE--TL--SELIR------TTLDAEKVFTQGL 213
Query: 775 ---MYVRNSLDRETRDYYA----------LT------VLAEDHGKYP---RSSSVPVVIH 812
++ N + +DY + V A+ G P RS H
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 813 --------IIDENDNKPEF-SNSSFVFSVM--------ENLPPDSFVGKLIATDKDVGRN 855
I E D+ F + +V+ E P S ++ +
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 856 AELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQNFISL-----EATVSDNGSP 910
S LS ++ + + L Q ISL VS G P
Sbjct: 334 VP-SPMLS-ISN----LTQEQVQDYVNKTNSH--LPAGKQVEISLVNGAKNLVVS--GPP 383
Query: 911 R--------LKDKVKVDVYITDQNDNSP----------QFLR------TPY--------- 937
+ L+ K K + DQ+ P +FL +
Sbjct: 384 QSLYGLNLTLR-KAKAPSGL-DQS-RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 938 ------KVQISEGASIGTQVFRVSTMDADE--GLNGDVYYKIISGNDDEHFS--ID-EAT 986
V + I V+ T D + L+G + +I+ D + E T
Sbjct: 441 KDLVKNNVSFN-AKDIQIPVY--DTFDGSDLRVLSGSISERIV----DCIIRLPVKWETT 493
Query: 987 GQITISKLLD 996
Q + +LD
Sbjct: 494 TQFKATHILD 503
Score = 49.3 bits (117), Expect = 9e-06
Identities = 77/438 (17%), Positives = 147/438 (33%), Gaps = 137/438 (31%)
Query: 777 VRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENL 836
+ + L T ++ + L E + +P D++P + E +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQF-----NKILPEPTEGF-AADDEPT--------TPAELV 61
Query: 837 PPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSRNGFIKTMRSFDRENLLQTTGQN 896
F+G +++ + + + L+ +FE + L+ G +
Sbjct: 62 G--KFLG-YVSSLVEPSKVGQFDQVLNLCLTEFE-----------NCY-----LE--GND 100
Query: 897 FISLEATV-SDNGSPRLKDKVKVDVYITDQNDNSPQFLRTPYKVQISEGASIGTQVFRVS 955
+L A + +N + +K K + YIT + + P+ + S A +FR
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYIT-----ARIMAKRPFD-KKSNSA-----LFR-- 147
Query: 956 TMDADEGLNGDVYYKIIS-----GNDDEHFSIDEATGQITISKLLDRETVSKFNLKVLAR 1010
EG ++++ GN D++F +E L D + L +
Sbjct: 148 --AVGEGNA-----QLVAIFGGQGNTDDYF--EE---------LRDLYQTYHVLVGDLIK 189
Query: 1011 DAATVVSNQLSSTTMVT-------IDV---LDENDNAP--MFVKTESKISVYENTTVNTQ 1058
+A + ++L TT+ +++ L+ N P ++ + IS Q
Sbjct: 190 FSAETL-SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-IPISC--PLIGVIQ 245
Query: 1059 LFHFQATDSDIGVNNEVLFSIGSGNKRDTFHMDPVTGILYLHKKLDYEEINSYVLNVTA- 1117
L H+ T +G L S G TG + + VTA
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKG----------ATGHS--------QGL------VTAV 281
Query: 1118 ----SDGGTPRLSTI-----FMFTINVEDCNDNPPSFPNTAIVRQIRENIPINTINVPIT 1168
+D ++ +F I V C + ++PNT++ I E+ N VP +
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVR-CYE---AYPNTSLPPSILEDSLENNEGVP-S 336
Query: 1169 FKKLKKKKKKKMLCSSGL 1186
ML S L
Sbjct: 337 P----------MLSISNL 344
Score = 48.5 bits (115), Expect = 2e-05
Identities = 48/347 (13%), Positives = 91/347 (26%), Gaps = 132/347 (38%)
Query: 215 DEGLNDREHINKYNLTIIATDKGNPPRTATAFLIIHVNDVNDHEPVFEKSEYSAVLSELA 274
+ D + Y +I+ NP L IH + E YSA++ E
Sbjct: 1647 NRA--DNHFKDTYGFSILDIVINNPVN-----LTIHFGGEKGKR-IREN--YSAMIFETI 1696
Query: 275 PAGSYVAGITATDEDTGVNAQIFYAFVSGNEHQWFEINPTSGLITTKTRDGGPNPKWAYT 334
G + + + F + ++ T +T
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTF-------RSEKGLLSAT-----------------QFT 1732
Query: 335 Q---LKVSILDENDEKPQFTQNVLNI----SLLENSAANTLVAT---LTASD-------- 376
Q + D K + SL E +A L + ++
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA---LASLADVMSIESLVEVVFYR 1789
Query: 377 ---------HDQDSITGQL-------TVKTKLDRETITDYELKVIAKDHGTPPQSSTATV 420
D+ + V +E + Y ++ + K G
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL-QYVVERVGKRTG---------- 1838
Query: 421 FLFIEDVNDNNPVFYPSQYFKQIPEDTQVGVSIVQVSAYDLDCGKNAQVTYSIESGSEAV 480
+E VN N QY V+A G A+
Sbjct: 1839 -WLVEIVNYNVE---NQQY----------------VAA-----GDL-----------RAL 1862
Query: 481 DGGNRKATENAIVEIIKNSMVETLEFEHYNGYTFSILEDHDKMQENL 527
D T ++ IK ++ +E + + S+ ++++ +L
Sbjct: 1863 D----TVTN--VLNFIKLQKIDIIELQK----SLSL----EEVEGHL 1895
Score = 48.1 bits (114), Expect = 2e-05
Identities = 103/616 (16%), Positives = 171/616 (27%), Gaps = 262/616 (42%)
Query: 477 SEAVDGGNRKATENAIVEIIKNSMVETLEFEHYNGYTFSILEDHD------KMQENLGRD 530
S V+ + +++ + E FE+ LE +D K+ +
Sbjct: 69 SSLVEPSKVGQFD----QVLNLCLTE---FEN------CYLEGNDIHALAAKLLQENDTT 115
Query: 531 VGKIK--IRN------------------------SDMQATIDQIKYAIVY---GDPKKKF 561
+ K K I+N + A + AI + G+ F
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL----VAI-FGGQGNTDDYF 170
Query: 562 EINDRTGEIITAAKLDREEQSIYN--------LVVSARSRLS------------YGKTFV 601
E E + +Y L+ + LS + +
Sbjct: 171 E----------------ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 602 NITLLDLNDNAPIFNRDKD-----EITIPENAAV--GQEIYVARA--------RDRDSGV 646
+ L+ N P DKD I+ P + + A+ R G
Sbjct: 215 ILEWLENPSNTP----DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 647 NSR-------IFYSLSSNPDDQFKIVETNGVIYL---------NKPIQSPPGSTLTIEIV 690
+ + + + + F V + L P S P S L + +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVR-KAITVLFFIGVRCYEAYPNTSLPPSILE-DSL 328
Query: 691 ASDSGKQS--LS----SKHSVNVYIQDVNDHTPVFDMSSYETSLLESTPVNNRFFELVAK 744
++ G S LS ++ V Y+ N H P
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP--------------------------- 361
Query: 745 DSDLGNNGFVSYSIIEGNGEDKF---GIFPDGFMYVRNSLDRETRDYYALTVLAEDHGKY 801
V S++ NG G P +Y L+ R A + D +
Sbjct: 362 -----AGKQVEISLV--NGAKNLVVSG-PPQS-LY---GLNLTLRKAKAPS--GLDQSRI 407
Query: 802 PRSSSVPVVIHIIDENDNKPEFSNSSFVFSVMENLP---PDSFVGKLI--ATDK---DVG 853
P S + K +FSN F LP P F L+ A+D D+
Sbjct: 408 PFS-------------ERKLKFSN-RF-------LPVASP--FHSHLLVPASDLINKDLV 444
Query: 854 RNAELSFALSNAKGDFEI---DSRNGFIKTMRSFDRENLLQTTGQNFISLEATVSDNGSP 910
+N +SF D +I D+ +G +R +S + S
Sbjct: 445 KN-NVSFNAK----DIQIPVYDTFDG--SDLRV--------------------LSGSISE 477
Query: 911 RLKDKVKVDVYITDQND--NSPQFLRT------PYKV--------QISEGASIGTQVFRV 954
R+ VD I + QF T P + +G G +V
Sbjct: 478 RI-----VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT--GVRVIVA 530
Query: 955 STMDADEGLNGDVYYK 970
T+D + D +K
Sbjct: 531 GTLDI--NPDDDYGFK 544
Score = 45.4 bits (107), Expect = 1e-04
Identities = 37/245 (15%), Positives = 81/245 (33%), Gaps = 66/245 (26%)
Query: 516 ILEDHDK-MQENLGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAA 574
+ D ++ G + I + N+ + TI +G K K I + +I
Sbjct: 1645 VWNRADNHFKDTYGFSILDI-VINNPVNLTI-------HFGGEKGK-RIRENYSAMIFET 1695
Query: 575 KLDREEQSIYNLVVSARSRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENA-----A 629
+D + ++ K F I + + + F +K ++ +
Sbjct: 1696 IVDGKLKTE--------------KIFKEI---NEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 630 VGQEIYVARARD-RDSGV--NSRIF-------YS-LSS-----NPDDQFKIVETNGVIYL 673
+ A D + G+ F Y+ L+S + + ++V G + +
Sbjct: 1739 ME----KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG-MTM 1793
Query: 674 NKPIQSPPGSTLTIEIVASDSGKQSLS-SKHSVNVYIQDVNDHTPVFDMSSYETSLLEST 732
+ ++A + G+ + S S+ ++ ++ V T L+E
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT---------GWLVE-- 1842
Query: 733 PVN-N 736
VN N
Sbjct: 1843 IVNYN 1847
Score = 41.6 bits (97), Expect = 0.002
Identities = 47/280 (16%), Positives = 89/280 (31%), Gaps = 79/280 (28%)
Query: 81 PPIFAHSVSDYSVSLNE-------SV--LPGTKVLQVIATDNDQG-DNAKITYYLSETER 130
PP S+ + S+ NE S+ L +V + N ++ L +
Sbjct: 320 PP----SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 131 KFTNCQQQRPGGSCPKS-CVFTVFARDHGSPRQDGRTYVTVNLLDANDHD---PVIKFRY 186
G P+S + R +P ++ + R+
Sbjct: 376 NLVVS------GP-PQSLYGLNLTLRKAKAPSGLDQSRIP--------FSERKLKFSNRF 420
Query: 187 FPSTAGFAT---VDENAINGSVVAAVSVVDPDEGLNDREHINKYNLTI--IATDKGNPPR 241
P + F + V A +++ D N+ N ++ I T G+ R
Sbjct: 421 LPVASPFHSHLLVP----------ASDLINKDLVKNNVS-FNAKDIQIPVYDTFDGSDLR 469
Query: 242 TATAFLIIHVNDVNDHEPV-FEKS-EYSA--VLSELAPAG-SYVAGITATDED-TGVNAQ 295
+ + + D PV +E + ++ A +L + P G S + +T ++D TGV
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHIL-DFGPGGASGLGVLTHRNKDGTGV--- 525
Query: 296 IFYAFVSGNEHQWFEINPTSGLITTKTRDGGPNPKWAYTQ 335
+I T D P+ + + Q
Sbjct: 526 --------------------RVIVAGTLDINPDDDYGFKQ 545
Score = 38.5 bits (89), Expect = 0.018
Identities = 41/236 (17%), Positives = 65/236 (27%), Gaps = 87/236 (36%)
Query: 11 QVSDTLQNSKAK--VTANPSGETSYLY-LQTT-------GKLDRETVDFYQ--LNISARD 58
QV +L N V+ P LY L T LD+ + F + L S R
Sbjct: 365 QVEISLVNGAKNLVVSGPPQ----SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR- 419
Query: 59 GGTPTRYGYLQVNVTILDVNDNPPIFA--HSVSDYSVSLNESVLPGTKVLQVIATDNDQG 116
+L P+ + HS L A+D
Sbjct: 420 --------FL-------------PVASPFHS--HL---LVP------------ASDLINK 441
Query: 117 DNAKITYYLSETERKFTNCQQQRPGGSCPKSCVFTVFARDHGSPRQDGRTYVTVNLLDAN 176
D L + F K V+ GS + ++ ++D
Sbjct: 442 D-------LVKNNVSFN-----------AKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 177 DHDPV-----IKFRY-----F-P-STAGFATVDENAINGSVVAAVSVVDPDEGLND 220
PV +F+ F P +G + +G+ V + D +D
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 31.6 bits (71), Expect = 2.0
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 20/79 (25%)
Query: 4 RTVDHSVQVSDTLQNSKAKVTANPSGETSYLYLQTTGKLDRETVDFYQLNISARDGGTPT 63
T+ +V + +++ + NP + +E + + + R G
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPG--------RVAASFSQEALQYVVERVGKRTGW--- 1839
Query: 64 RYGYLQVNVTILDVNDNPP 82
+++ VN N
Sbjct: 1840 ---LVEI------VNYNVE 1849
Score = 29.6 bits (66), Expect = 7.7
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 19/99 (19%)
Query: 23 VTANPSGETSYLYLQTTGKLDRETVDFYQLNI--SARDGGTPTRYGYLQVNVTILDVNDN 80
V NP T + G+ + + Y I + DG T + ++N
Sbjct: 1665 VINNPVNLTIHF----GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 81 PP-------------IFAHSVSDYSVSLNESVLPGTKVL 106
+ + + ++ ++P
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF 1759
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 42.6 bits (101), Expect = 5e-05
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 830 FSVMENLPPDSFVGKLIATDKDVGRN-AELSF----ALSNAKGD-FEIDSRNGFIKTMRS 883
+S+ E +FVG++ +D+G EL S +GD E++ +NG +
Sbjct: 7 YSIPEEAKHGTFVGRIA---QDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSR 63
Query: 884 FDRENLLQTTGQNFISLEATVSDNGSPRLKDKVK---VDVYITDQNDN 928
DRE L + + I LE V ++ V+V + D NDN
Sbjct: 64 IDREELCGRSAECSIHLEVIV--------DRPLQVFHVEVEVRDINDN 103
Score = 38.3 bits (90), Expect = 0.001
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 23/93 (24%)
Query: 527 LGRDVGKIKIRNSDMQATIDQIKYAIVYGDPKKKFEINDRTGEIITAAKLDREE---QSI 583
LG ++ ++ R + + D E+N + G + +++DREE +S
Sbjct: 26 LGLELTELVPR-----------LFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSA 74
Query: 584 -----YNLVVSARSRLSYGKTFVNITLLDLNDN 611
++V ++ + V + + D+NDN
Sbjct: 75 ECSIHLEVIVDRPLQVFH----VEVEVRDINDN 103
Score = 36.8 bits (86), Expect = 0.005
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 1068 DIGVNNEVL----FSIGSGNKRDTFHMDPVTGILYLHKKLDYEEI----NSYVLN--VTA 1117
D+G+ L F + S ++ D ++ GIL+++ ++D EE+ ++ V
Sbjct: 25 DLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIV 84
Query: 1118 SDGGTPRLSTIFMFTINVEDCNDN 1141
P +F + V D NDN
Sbjct: 85 DR---PL--QVFHVEVEVRDINDN 103
Score = 34.5 bits (80), Expect = 0.031
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
Query: 940 QISEGASIGTQVFRVSTMDADEGLNGDVY----YKIISGNDDEHFSIDEATGQITISKLL 995
I E A GT V R++ D GL +++ S + + ++ G + ++ +
Sbjct: 8 SIPEEAKHGTFVGRIA---QDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRI 64
Query: 996 DRETVSK------FNLKVLARDAATVVSNQLSSTTMVTIDVLDENDN 1036
DRE + +L+V+ V V ++V D NDN
Sbjct: 65 DREELCGRSAECSIHLEVIVDRPLQVFH--------VEVEVRDINDN 103
Score = 31.0 bits (71), Expect = 0.56
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 380 DSITGQLTVKTKLDRETI---TD---YELKVIAKDHGTPPQSSTATVFLFIEDVNDN 430
+ G L V +++DRE + + L+VI P Q V + D+NDN
Sbjct: 52 NLQNGILFVNSRIDREELCGRSAECSIHLEVIVDR---PLQVFHVEV--EVRDINDN 103
Score = 30.2 bits (69), Expect = 0.98
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 623 TIPENAAVGQEIYVAR-ARDRDSGVN---SRIFYSLSSNPDDQFKIVETNGVIYLNKPI- 677
+IPE A G +V R A+D + R+F S + D ++ NG++++N I
Sbjct: 8 SIPEEAKHG--TFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRID 65
Query: 678 ------QSPPGSTLTIEIVASDSGKQSLSSKHSVNVYIQDVNDH 715
+S ++ +E++ + V V ++D+ND+
Sbjct: 66 REELCGRSAE-CSIHLEVIVDRPLQV-----FHVEVEVRDINDN 103
Score = 29.5 bits (67), Expect = 1.8
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 266 YSAVLSELAPAGSYVAGITATDEDTGVNAQIFYA----FVSGNEHQWFEINPTSGLITTK 321
YS + E A G++V I +D G+ S + E+N +G++
Sbjct: 7 YS--IPEEAKHGTFVGRIA---QDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVN 61
Query: 322 TR 323
+R
Sbjct: 62 SR 63
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 41.0 bits (95), Expect = 6e-04
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 815 DENDNKPEFSNSSFVFSVMENLPPDSFVGKLIATDKDVGRNAELSFALSNAKGDFEIDSR 874
+ K F + + +++ + + + R ++ + S DF++D
Sbjct: 28 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNV--KFSNCNRKRKVQYESSE-PADFKVDE- 83
Query: 875 NGFIKTMRSFDREN 888
+G + +RSF
Sbjct: 84 DGTVYAVRSFPLTA 97
Score = 29.4 bits (65), Expect = 4.1
Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 15/117 (12%)
Query: 710 QDVNDHTPVFDMSSY----ETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGED 765
++ F Y + E P+ N F + V Y +
Sbjct: 27 GEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFS------NCNRKRKVQYES---SEPA 77
Query: 766 KFGIFPDGFMYVRNSLDRETRDYYALTVLAEDHGKYPRSSSVPVVIHIIDENDNKPE 822
F + DG +Y S + A+D V V + +P
Sbjct: 78 DFKVDEDGTVYAVRSFPLTAEQ-AKFLIYAQDKET-QEKWQVAVNLSREPTLTEEPM 132
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 33.5 bits (77), Expect = 0.60
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 548 IKYAIVYGDPKKKFEIND----RTGEIITAAKLDREEQSIYNLVVSARSRLSYGKTFVNI 603
I++A+ G P + I D + A L R I L+ + + + +
Sbjct: 343 IRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKK 402
Query: 604 TLLDLNDNAPIFNRDKDEITIP 625
+ A + E+ P
Sbjct: 403 VMGKERPQAKDVVVREGEVIFP 424
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics,
protein structure initiative, PSI, CESG, AK104879,
phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP:
a.24.10.2 PDB: 2q4f_A 1wn0_A
Length = 149
Score = 31.1 bits (70), Expect = 1.0
Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 720 DMSSYETSLLESTPVNNRFFELVAKDSDLGNNGFVSYSIIEGNGEDKFGIFPDGFMYVRN 779
+++ +S+ V+ +F +L + G GFVS ++ +D I + +
Sbjct: 9 QLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVS-EVVTLFCDDADRIINE----IAT 63
Query: 780 SLDRETRDYYALTVLA 795
L++ ++ +
Sbjct: 64 LLEQPVVNFDKVDAYV 79
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD
with sulfur, putative REDU PSI; 1.28A {Pseudomonas
aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Length = 193
Score = 31.2 bits (71), Expect = 1.4
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 601 VNITLLDLNDNAPIFNRDKDEITIPENAA 629
++I L D++ P++N D + P
Sbjct: 37 MSIELADISG-IPLYNEDVYALGFPPAVE 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.6
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 11/34 (32%)
Query: 262 EKSEYSAVLSEL-------APAGSYVAGITATDE 288
EK + + L APA +A I AT E
Sbjct: 18 EKQALKKLQASLKLYADDSAPA---LA-IKATME 47
Score = 30.3 bits (67), Expect = 2.1
Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 996 DRETVSKF--NLKVLARDAATVVSNQLSST 1023
+++ + K +LK+ A D+A ++ + +T
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA--IKAT 45
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide,
immune system; HET: NAG; 2.70A {Anopheles gambiae}
Length = 1325
Score = 31.1 bits (69), Expect = 2.6
Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 6/145 (4%)
Query: 570 IITAAKLDREEQSIYNLVVSARSRLSYGKTFVNITLLDLNDNAPIFNRDKDEITIPENAA 629
++ K R Q Y LV+S K + + L DN + + N
Sbjct: 2 LVVGPKFIRANQE-YTLVISN-FNSQLSKVDLLLKLEGETDNGLSVLNVTKMVDVRRNMN 59
Query: 630 VGQEIYVARARDRDS---GVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPIQSPPGSTLT 686
+ + ++ + +S + + +G+I ++KP+ P G T+
Sbjct: 60 RMINFNMPEDLTAGNYKITIDGQRGFSFHKEAELVYLSKSISGLIQVDKPVFKP-GDTVN 118
Query: 687 IEIVASDSGKQSLSSKHSVNVYIQD 711
++ D+ + + SV V I+D
Sbjct: 119 FRVIVLDTELKPPARVKSVYVTIRD 143
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP
binding binding protein; HET: TLO NAP; 1.71A
{Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A*
3rc7_A* 3rc9_A*
Length = 350
Score = 30.4 bits (69), Expect = 3.5
Identities = 7/52 (13%), Positives = 21/52 (40%)
Query: 643 DSGVNSRIFYSLSSNPDDQFKIVETNGVIYLNKPIQSPPGSTLTIEIVASDS 694
GV +++ + + + ++ + G +++N+ P + I D
Sbjct: 243 RQGVTAQLTFGMEHAYTNNYEFRGSTGRLWMNRVFTPPATYQPVVHIERQDH 294
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 28.5 bits (64), Expect = 6.2
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 10/36 (27%)
Query: 319 TTKTRDGGPNPKW----------AYTQLKVSILDEN 344
+ G P+W T+LK I D++
Sbjct: 46 SNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKD 81
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
K+-ATPase, P-type ATPase, membrane protein, hydrolase,
aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB:
2xzb_B
Length = 290
Score = 29.3 bits (65), Expect = 7.7
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 141 GGSCPKSCVFTVFARDHG-SPRQDGRTYVTVNLLDANDHDPVIKFRYFPSTAGF 193
G + K C R P V LD P ++ YFP+ +
Sbjct: 171 GFAEGKPCFIIKMNRIVKFLPGNSTAPRVDCAFLDQPRDGPPLQVEYFPANGTY 224
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 29.3 bits (65), Expect = 9.3
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 173 LDAND-HDP---VIKFRYFPSTAGFATVDENAINGSVVAAVSVVDPDEGLNDREHINKYN 228
LDA+ DP + + + + +I+ S A+ +V P HI
Sbjct: 359 LDASGSSDPDGDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSNAGGKDIHI---- 414
Query: 229 LTIIATDKGNPPRTATAFLIIHV 251
+ D G+P A ++I+V
Sbjct: 415 -LLTLRDNGSPNLYAYRRVVINV 436
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 29.1 bits (66), Expect = 9.6
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 408 DHGTPPQSSTATVFLFIEDVNDNNP 432
DHG P ++ ++ F+ V
Sbjct: 189 DHGVPTANAAESILQFVHMVRQQAT 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.370
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,342,540
Number of extensions: 1076372
Number of successful extensions: 3271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2080
Number of HSP's successfully gapped: 420
Length of query: 1186
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1082
Effective length of database: 3,798,009
Effective search space: 4109445738
Effective search space used: 4109445738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.5 bits)