BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2600
(158 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|444728525|gb|ELW68981.1| Ras-related protein Rab-28 [Tupaia chinensis]
Length = 133
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 18 LKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDME 76
LK+V+LGD + GK V+ +YD+T+ QSF ++ W + ++ +S T VALV NK D+E
Sbjct: 13 LKIVVLGDGTSGKGVLLVYDVTNHQSFENLEDWYTMVKKVSEESETQPLVALVGNKIDLE 72
Query: 77 HQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107
H R V E+H + Q S VSA+TGD+
Sbjct: 73 HMRTVKTEKHLRFCQENGFSSHFVSAKTGDS 103
>gi|449273525|gb|EMC83019.1| Ras-related protein Rab-28 [Columba livia]
Length = 222
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+GQSF ++ W ++ +N S T VALV NK D+EH R V +++H +L
Sbjct: 90 ILLVYDITNGQSFENLEDWYNVVKKVNEDSETQPLVALVGNKVDLEHMRTVKVDKHQRLC 149
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q + S VSA+TGD+ ++
Sbjct: 150 QENNFSSHFVSAKTGDSVFL 169
>gi|71896105|ref|NP_001025601.1| RAB28, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|60688519|gb|AAH91050.1| RAB28, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 221
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + +N +S T +VALV NK D+EH R V ++H +
Sbjct: 89 VLLVYDITNYQSFENLEDWFSMVKKVNDESETQPFVALVGNKIDLEHMRTVKADKHQRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q +L S+ VSA+TGD+ ++
Sbjct: 149 QENNLGSYFVSAKTGDSVFL 168
>gi|312080726|ref|XP_003142724.1| small GTP binding protein RAB28 [Loa loa]
gi|307762116|gb|EFO21350.1| small GTP binding protein RAB28 [Loa loa]
Length = 226
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLF-HLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YD+T+ SF ++ W+++ + + P + LV NK D+EH+RV+ +ERH K A
Sbjct: 89 VVVYDVTNSSSFENLEDWINIIKQVTKAQEKPAVLMLVGNKTDLEHRRVIRIERHTKFAL 148
Query: 92 SLHLHSFAVSARTGDNCWVNTR--TPEINPLKYLQSNNEYNFL 132
+ S+ VSA+TGD+ + R EI + QS+ E + +
Sbjct: 149 QYGMSSYYVSAKTGDSVTLMFRKTAAEILGIPLEQSDTEGDII 191
>gi|242013615|ref|XP_002427498.1| RAB-28, putative [Pediculus humanus corporis]
gi|212511893|gb|EEB14760.1| RAB-28, putative [Pediculus humanus corporis]
Length = 224
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLF-HLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
I+I +YDIT+ SF +I W++L + N++ + +A+ NK D+EHQR++ E+H +
Sbjct: 88 IIILVYDITNHSSFCNIELWLELIKNTNKQYHRKSMIAIFGNKCDLEHQRMIRFEKHQRY 147
Query: 90 AQSLHLHSFAVSARTGDN 107
A HL S VS RTG+N
Sbjct: 148 ASENHLFSQIVSGRTGEN 165
>gi|402585718|gb|EJW79657.1| member Ras oncogene family RAB28 [Wuchereria bancrofti]
Length = 221
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLF-HLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YD+T+ SF ++ W+++ + + P + LV NK D+EH+RV+ +ERH K A
Sbjct: 84 VVVYDVTNSSSFENLEDWINIIKQVTKTQERPVVLMLVGNKTDLEHRRVIRIERHTKFAL 143
Query: 92 SLHLHSFAVSARTGDNCWVNTR--TPEINPLKYLQSNNEYNFL 132
+ S+ VSA+TGD+ + R EI + QS+ E + +
Sbjct: 144 QYGMSSYYVSAKTGDSVTLMFRKTAAEILGIPLEQSDTEGDII 186
>gi|170589217|ref|XP_001899370.1| small GTP binding protein RAB28 [Brugia malayi]
gi|158593583|gb|EDP32178.1| small GTP binding protein RAB28, putative [Brugia malayi]
Length = 221
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLF-HLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YD+T+ SF ++ W+++ + + P + LV NK D+EH+RV+ +ERH K A
Sbjct: 84 VVVYDVTNSSSFENLEDWINIIKQVTKTQERPVVLMLVGNKTDLEHRRVIRIERHTKFAL 143
Query: 92 SLHLHSFAVSARTGDNCWVNTR--TPEINPLKYLQSNNEYNFL 132
+ S+ VSA+TGD+ + R EI + QS+ E + +
Sbjct: 144 QYGMSSYYVSAKTGDSVTLMFRKTAAEILGIPLEQSDTEGDII 186
>gi|73951461|ref|XP_535076.2| PREDICTED: ras-related protein Rab-28 isoform 2 [Canis lupus
familiaris]
Length = 221
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V LE+H +L
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKLEKHLRLC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|73951459|ref|XP_862740.1| PREDICTED: ras-related protein Rab-28 isoform 3 [Canis lupus
familiaris]
Length = 220
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V LE+H +L
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKLEKHLRLC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|387017960|gb|AFJ51098.1| ras-related protein Rab-28-like isoform 2 [Crotalus adamanteus]
Length = 233
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
+ V+ +YD+T+ QSF ++ W + +N +S T +VALV NK D+EH R V +++H
Sbjct: 88 AQAVLLVYDVTNQQSFENLENWYSVVKKVNEESETQLHVALVGNKIDLEHLRTVKIDKHL 147
Query: 88 KLAQSLHLHSFAVSARTGDNCWV 110
+ Q H + VSA+TGD+ ++
Sbjct: 148 QFCQESHSSNHFVSAKTGDSVFL 170
>gi|41054307|ref|NP_956046.1| ras-related protein Rab-28 [Danio rerio]
gi|28277631|gb|AAH45389.1| RAB28, member RAS oncogene family [Danio rerio]
Length = 221
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W+ + N +S ++L+ NK D+EH R V +E+H +
Sbjct: 89 VLLVYDITNSQSFENLEDWLSMVRKANEESDVQPAISLIGNKIDLEHMRTVKMEKHQRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q L S VSA+TGD+ ++
Sbjct: 149 QENGLVSQFVSAKTGDSVFL 168
>gi|126331904|ref|XP_001363631.1| PREDICTED: ras-related protein Rab-28-like isoform 1 [Monodelphis
domestica]
Length = 221
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W ++ +N +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYNMVKKVNEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q L S VSA+TGD+ ++
Sbjct: 149 QENGLSSHFVSAKTGDSVFL 168
>gi|126331906|ref|XP_001363710.1| PREDICTED: ras-related protein Rab-28-like isoform 2 [Monodelphis
domestica]
Length = 220
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W ++ +N +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYNMVKKVNEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q L S VSA+TGD+ ++
Sbjct: 149 QENGLSSHFVSAKTGDSVFL 168
>gi|17542952|ref|NP_501609.1| Protein RAB-28 [Caenorhabditis elegans]
gi|3880725|emb|CAA21582.1| Protein RAB-28 [Caenorhabditis elegans]
Length = 248
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSS-TPTYVALVANKGDMEHQRVVTLERHAKL 89
IV +YD+T+ +SF + W+ + N KSS TP + L+ NK D+E +RVV++E H
Sbjct: 111 IVFLVYDVTNSKSFENAVDWLSVVKKNTKSSETPVKLVLMGNKTDLEERRVVSVEAHKNF 170
Query: 90 AQSLHLHSFAVSARTGDNCWVNTR 113
A S + VSA+TGD ++ R
Sbjct: 171 ATSNDMMPTYVSAKTGDTVFLTFR 194
>gi|399163165|gb|AFP33158.1| rab-28, partial [Caenorhabditis elegans]
Length = 247
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSS-TPTYVALVANKGDMEHQRVVTLERHAKL 89
IV +YD+T+ +SF + W+ + N KSS TP + L+ NK D+E +RVV++E H
Sbjct: 110 IVFLVYDVTNSKSFENAVDWLSVVKKNTKSSETPVKLVLMGNKTDLEERRVVSVEAHKNF 169
Query: 90 AQSLHLHSFAVSARTGDNCWVNTR 113
A S + VSA+TGD ++ R
Sbjct: 170 ATSNDMMPTYVSAKTGDTVFLTFR 193
>gi|344279086|ref|XP_003411322.1| PREDICTED: ras-related protein Rab-28-like isoform 1 [Loxodonta
africana]
Length = 221
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S+ VSA+TGD+ ++
Sbjct: 149 QENGFSSYFVSAKTGDSVFL 168
>gi|224050100|ref|XP_002195228.1| PREDICTED: ras-related protein Rab-28 [Taeniopygia guttata]
Length = 222
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+GQSF ++ W ++ +N S T VALV NK D+EH V ++H +
Sbjct: 90 ILLVYDITNGQSFENLEDWYNVVKKVNEGSETQPLVALVGNKIDLEHICTVKADKHQRFC 149
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q + S VSA+TGD+ ++
Sbjct: 150 QENNFSSHFVSAKTGDSVFL 169
>gi|303274506|ref|XP_003056572.1| ras-related protein rab28-like protein [Micromonas pusilla
CCMP1545]
gi|226462656|gb|EEH59948.1| ras-related protein rab28-like protein [Micromonas pusilla
CCMP1545]
Length = 222
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ ++ +YDI++ QSF ++ W L YVAL+ANK D+ H R VT E H +
Sbjct: 86 AQAIVLIYDISNYQSFENLQDWYALVKKTFNGRLMPYVALMANKADLSHIRAVTPEMHNE 145
Query: 89 LAQSLHLHSFAVSARTGDN 107
A + + S+ VSA+TGDN
Sbjct: 146 FADANEMCSYFVSAKTGDN 164
>gi|344279088|ref|XP_003411323.1| PREDICTED: ras-related protein Rab-28-like isoform 2 [Loxodonta
africana]
Length = 220
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S+ VSA+TGD+ ++
Sbjct: 149 QENGFSSYFVSAKTGDSVFL 168
>gi|341879693|gb|EGT35628.1| hypothetical protein CAEBREN_09202 [Caenorhabditis brenneri]
gi|341897534|gb|EGT53469.1| hypothetical protein CAEBREN_20167 [Caenorhabditis brenneri]
Length = 248
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSS-TPTYVALVANKGDMEHQRVVTLERHAKL 89
IV F+YD+T+ +SF ++ W+ + N K S TP + L+ NK D+E R VT++ H
Sbjct: 111 IVFFVYDVTNAKSFENVNDWLTVVKRNTKGSETPVKLVLMGNKTDLEQSRQVTVDNHKNF 170
Query: 90 AQSLHLHSFAVSARTGDNCWVNTR 113
A + + VSA+TGD ++ R
Sbjct: 171 ANANDMVPVYVSAKTGDTVFMTFR 194
>gi|349603427|gb|AEP99268.1| Ras-like protein Rab-28-like protein, partial [Equus caballus]
Length = 147
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + +N +S T +ALV NK D+EH R V E+H +
Sbjct: 15 ILLVYDITNYQSFENLEDWYSVVKKVNEESETQPLIALVGNKIDLEHMRTVKPEKHLRFC 74
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 75 QENGFSSHFVSAKTGDSVFL 94
>gi|196009402|ref|XP_002114566.1| hypothetical protein TRIADDRAFT_58528 [Trichoplax adhaerens]
gi|190582628|gb|EDV22700.1| hypothetical protein TRIADDRAFT_58528 [Trichoplax adhaerens]
Length = 223
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
K V+ +YDIT+ SF ++ W L KS ++A+VANK D+EH R V E+H K
Sbjct: 87 AKAVLLIYDITNPNSFENLEDWYSLVRNMFKSEKIPHIAIVANKMDLEHMRAVKQEKHTK 146
Query: 89 LAQSLHLHSFAVSARTGDN 107
AQ S +SA+T D
Sbjct: 147 FAQEHGFSSHFISAKTADQ 165
>gi|149703164|ref|XP_001500973.1| PREDICTED: ras-related protein Rab-28-like isoform 1 [Equus
caballus]
Length = 221
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + +N +S T +ALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVNEESETQPLIALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|395543031|ref|XP_003773426.1| PREDICTED: ras-related protein Rab-28 [Sarcophilus harrisii]
Length = 204
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + +N +S T VALV NK D+EH R V ++H +
Sbjct: 72 ILLVYDITNYQSFENLEDWHSMVKKVNEESETQPLVALVGNKIDLEHMRTVKSDKHLRFC 131
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q L S VSA+TGD+ ++
Sbjct: 132 QENGLSSHFVSAKTGDSVFL 151
>gi|291385530|ref|XP_002709405.1| PREDICTED: RAB28, member RAS oncogene family [Oryctolagus
cuniculus]
Length = 220
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + +N +S T VALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYAVVKKVNEESETQPLVALVGNKIDLEHMRTVKSEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|338723745|ref|XP_003364786.1| PREDICTED: ras-related protein Rab-28-like isoform 2 [Equus
caballus]
Length = 220
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + +N +S T +ALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVNEESETQPLIALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|318067918|ref|NP_001188206.1| ras-related protein Rab-28 [Ictalurus punctatus]
gi|308324152|gb|ADO29211.1| ras-related protein rab-28 [Ictalurus punctatus]
Length = 221
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W N +S T +ALV NK D+EH R V +++H +
Sbjct: 89 VLLVYDITNSQSFENLEDWYGAVKKANEESDTQPVIALVGNKIDLEHMRTVKVDKHQRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q + S VSA+TGD+ ++
Sbjct: 149 QENGIISQFVSAKTGDSVFL 168
>gi|348687246|gb|EGZ27060.1| hypothetical protein PHYSODRAFT_308524 [Phytophthora sojae]
Length = 226
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YDIT+ +SF ++ W L YVALV NK D+ H R V + +H + +
Sbjct: 92 VLLVYDITNYESFQNLEDWYRLVRRTFDDERMPYVALVGNKSDLNHLRAVKVAKHKQFTE 151
Query: 92 SLHLHSFAVSARTGDNCWVNT 112
L SF VSA+TGD VNT
Sbjct: 152 ENDLKSFFVSAKTGDQ--VNT 170
>gi|301123673|ref|XP_002909563.1| ras family GTPase, putative [Phytophthora infestans T30-4]
gi|262100325|gb|EEY58377.1| ras family GTPase, putative [Phytophthora infestans T30-4]
Length = 226
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ V+ +YDIT+ +SF ++ W L YVALV NK D+ H R V + +H +
Sbjct: 89 AQAVLLVYDITNYESFQNLEDWYRLVRRTFDDERMPYVALVGNKTDLNHLRAVKVAKHKQ 148
Query: 89 LAQSLHLHSFAVSARTGDNCWVNT 112
+ L+SF VSA+TGD VNT
Sbjct: 149 FTEENDLNSFFVSAKTGDQ--VNT 170
>gi|50747208|ref|XP_420785.1| PREDICTED: ras-related protein Rab-28 [Gallus gallus]
Length = 222
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W ++ + +S VALV NK D+EH R V +++H +
Sbjct: 90 ILLVYDITNCQSFENLEDWYNVVKKVTEESEMQPLVALVGNKIDLEHMRTVKVDKHQRFC 149
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q + S VSA+TGD+ ++
Sbjct: 150 QENNFSSHFVSAKTGDSVFL 169
>gi|348557192|ref|XP_003464404.1| PREDICTED: ras-related protein Rab-28-like isoform 1 [Cavia
porcellus]
Length = 221
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|390358358|ref|XP_789541.3| PREDICTED: ras-related protein Rab-28-like [Strongylocentrotus
purpuratus]
Length = 224
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 12 DNYEIQLKVVLLGDPSCGKI-----------VIFMYDITSGQSFHSIPTWVD-LFHLNRK 59
DN + L+V +G + G V+ +YDIT+ SF ++ W L + +
Sbjct: 60 DNTHVSLQVWDIGGQTLGGKMLENYLYGAHGVLLVYDITNYSSFENVEDWYQKLRDVCKD 119
Query: 60 SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107
+ +VALV NK D+EH R V E+H KL Q ++ S VSA+TGD+
Sbjct: 120 ADKFPHVALVGNKADLEHMRTVKDEKHQKLCQEHNMSSHFVSAKTGDS 167
>gi|167533239|ref|XP_001748299.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773111|gb|EDQ86754.1| predicted protein [Monosiga brevicollis MX1]
Length = 228
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 4 VKMLNLHNDNYEIQLKVVLLGDPSCG-----------KIVIFMYDITSGQSFHSIPTWVD 52
+K LNL D Y + L++ +G + G K VI +YDIT+ SF + W
Sbjct: 49 MKRLNLPGDKY-VTLQIWDIGGQAIGGKMIRNYLENAKGVILVYDITNRDSFEDLADWYQ 107
Query: 53 LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNT 112
L S +V L+ANK D+ H R V ERH A + SF+V A+ G N ++
Sbjct: 108 LVVDTCSDSGMPHVGLMANKMDLAHMRAVPAERHDDFAARHQMLSFSVCAKDGSNVDLSF 167
Query: 113 R 113
R
Sbjct: 168 R 168
>gi|178056548|ref|NP_001116647.1| ras-related protein Rab-28 [Sus scrofa]
gi|115394770|gb|ABI97179.1| RB28 [Sus scrofa]
Length = 221
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNHQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|403287053|ref|XP_003934774.1| PREDICTED: uncharacterized protein LOC101036660 [Saimiri
boliviensis boliviensis]
Length = 505
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 373 ILLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 432
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 433 QENGFSSHFVSAKTGDSVFL 452
>gi|332218783|ref|XP_003258538.1| PREDICTED: ras-related protein Rab-28 isoform 1 [Nomascus
leucogenys]
Length = 221
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWFTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|355714887|gb|AES05150.1| RAB28, member RAS oncoprotein family [Mustela putorius furo]
Length = 199
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|348557194|ref|XP_003464405.1| PREDICTED: ras-related protein Rab-28-like isoform 2 [Cavia
porcellus]
Length = 219
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|77736213|ref|NP_001029806.1| ras-related protein Rab-28 [Bos taurus]
gi|118573263|sp|Q3SWY9.1|RAB28_BOVIN RecName: Full=Ras-related protein Rab-28; Flags: Precursor
gi|74356300|gb|AAI04593.1| RAB28, member RAS oncogene family [Bos taurus]
gi|296486276|tpg|DAA28389.1| TPA: ras-related protein Rab-28 [Bos taurus]
gi|440910694|gb|ELR60461.1| Ras-related protein Rab-28 [Bos grunniens mutus]
Length = 221
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YD+T+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 VLLVYDVTNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|63029939|ref|NP_001017979.1| ras-related protein Rab-28 isoform 1 [Homo sapiens]
gi|397513038|ref|XP_003826835.1| PREDICTED: ras-related protein Rab-28 isoform 1 [Pan paniscus]
gi|85700393|sp|P51157.2|RAB28_HUMAN RecName: Full=Ras-related protein Rab-28; Flags: Precursor
gi|23272309|gb|AAH35054.1| RAB28, member RAS oncogene family [Homo sapiens]
gi|312151922|gb|ADQ32473.1| RAB28, member RAS oncogene family [synthetic construct]
gi|410216638|gb|JAA05538.1| RAB28, member RAS oncogene family [Pan troglodytes]
gi|410258322|gb|JAA17128.1| RAB28, member RAS oncogene family [Pan troglodytes]
gi|410303588|gb|JAA30394.1| RAB28, member RAS oncogene family [Pan troglodytes]
gi|410352965|gb|JAA43086.1| RAB28, member RAS oncogene family [Pan troglodytes]
Length = 221
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|355687170|gb|EHH25754.1| Ras-related protein Rab-28 [Macaca mulatta]
Length = 221
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|380787219|gb|AFE65485.1| ras-related protein Rab-28 isoform 1 [Macaca mulatta]
gi|383422943|gb|AFH34685.1| ras-related protein Rab-28 isoform 1 [Macaca mulatta]
gi|384950388|gb|AFI38799.1| ras-related protein Rab-28 isoform 1 [Macaca mulatta]
Length = 221
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|332218787|ref|XP_003258540.1| PREDICTED: ras-related protein Rab-28 isoform 3 [Nomascus
leucogenys]
Length = 205
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWFTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|332218785|ref|XP_003258539.1| PREDICTED: ras-related protein Rab-28 isoform 2 [Nomascus
leucogenys]
Length = 220
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWFTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|1154852|emb|CAA64364.1| rab28 [Homo sapiens]
Length = 220
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|227497996|ref|NP_004240.2| ras-related protein Rab-28 isoform 2 [Homo sapiens]
gi|397513040|ref|XP_003826836.1| PREDICTED: ras-related protein Rab-28 isoform 2 [Pan paniscus]
gi|20379086|gb|AAM21103.1|AF498955_1 small GTP binding protein RAB28 [Homo sapiens]
gi|119613117|gb|EAW92711.1| RAB28, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|410216640|gb|JAA05539.1| RAB28, member RAS oncogene family [Pan troglodytes]
gi|410258324|gb|JAA17129.1| RAB28, member RAS oncogene family [Pan troglodytes]
gi|410303590|gb|JAA30395.1| RAB28, member RAS oncogene family [Pan troglodytes]
gi|410352967|gb|JAA43087.1| RAB28, member RAS oncogene family [Pan troglodytes]
Length = 220
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|58037191|ref|NP_081571.1| ras-related protein Rab-28 [Mus musculus]
gi|46577110|sp|Q99KL7.1|RAB28_MOUSE RecName: Full=Ras-related protein Rab-28; Flags: Precursor
gi|13435428|gb|AAH04580.1| RAB28, member RAS oncogene family [Mus musculus]
gi|74197162|dbj|BAE35127.1| unnamed protein product [Mus musculus]
gi|112293017|dbj|BAF02886.1| Rab28 [Mus musculus]
Length = 221
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|395859510|ref|XP_003802081.1| PREDICTED: ras-related protein Rab-28 [Otolemur garnettii]
Length = 220
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T +ALV NK D+EH R V E+H +
Sbjct: 89 VLLVYDITNHQSFENLEDWYTVVKKVSEESETQPLIALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|227498036|ref|NP_001153073.1| ras-related protein Rab-28 isoform 3 [Homo sapiens]
Length = 204
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|187936989|ref|NP_001120755.1| ras-related protein Rab-28 [Ovis aries]
gi|186886446|gb|ACC93599.1| RAS oncogene family 28 protein [Ovis aries]
Length = 221
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YD+T+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 VLLVYDVTNYQSFENLEDWYSVVKKVSEESETRPLVALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|397513042|ref|XP_003826837.1| PREDICTED: ras-related protein Rab-28 isoform 3 [Pan paniscus]
gi|410258326|gb|JAA17130.1| RAB28, member RAS oncogene family [Pan troglodytes]
Length = 205
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|148705630|gb|EDL37577.1| RAB28, member RAS oncogene family, isoform CRA_e [Mus musculus]
Length = 192
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|12848935|dbj|BAB28144.1| unnamed protein product [Mus musculus]
gi|148705628|gb|EDL37575.1| RAB28, member RAS oncogene family, isoform CRA_c [Mus musculus]
Length = 193
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|197097868|ref|NP_001124634.1| ras-related protein Rab-28 [Pongo abelii]
gi|75055283|sp|Q5RFI2.1|RAB28_PONAB RecName: Full=Ras-related protein Rab-28; Flags: Precursor
gi|55725219|emb|CAH89475.1| hypothetical protein [Pongo abelii]
Length = 221
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETRPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|193664606|ref|XP_001944695.1| PREDICTED: ras-related protein Rab-3-like [Acyrthosiphon pisum]
Length = 218
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DMEH+RV++ ER LA
Sbjct: 97 ILMYDITNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEHERVISYERGKTLADE 154
Query: 93 LHLHSFAVSARTGDN 107
L++ F SA+ N
Sbjct: 155 LNIEFFETSAKDNHN 169
>gi|74149432|dbj|BAE36368.1| unnamed protein product [Mus musculus]
Length = 144
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 12 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFC 71
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 72 QENGFSSHFVSAKTGDSVFL 91
>gi|402868944|ref|XP_003898539.1| PREDICTED: ras-related protein Rab-28 [Papio anubis]
Length = 220
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|388452492|ref|NP_001252653.1| ras-related protein Rab-28 [Macaca mulatta]
gi|387540624|gb|AFJ70939.1| ras-related protein Rab-28 isoform 2 [Macaca mulatta]
Length = 220
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|157835119|pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
gi|197305216|pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 142
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 143 QENGFSSHFVSAKTGDSVFL 162
>gi|410914281|ref|XP_003970616.1| PREDICTED: ras-related protein Rab-28-like isoform 2 [Takifugu
rubripes]
Length = 222
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + N +S V+L+ NK D+EH R V ++H +
Sbjct: 89 VLLVYDITNYQSFENLEDWFSMVKKANEESDVQPVVSLIGNKIDLEHMRTVKADKHQRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q L S VSA+TGD+ ++
Sbjct: 149 QENGLLSQFVSAKTGDSVYL 168
>gi|380020626|ref|XP_003694183.1| PREDICTED: ras-related protein Rab-3-like [Apis florea]
Length = 228
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV+T ER +LA
Sbjct: 103 ILMYDITNEESFNSVQDWVT--QIKTYSCDNAQVILVGNKCDMEDERVITTERGKQLADQ 160
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 161 LGVQFFETSAK 171
>gi|410914279|ref|XP_003970615.1| PREDICTED: ras-related protein Rab-28-like isoform 1 [Takifugu
rubripes]
Length = 221
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + N +S V+L+ NK D+EH R V ++H +
Sbjct: 89 VLLVYDITNYQSFENLEDWFSMVKKANEESDVQPVVSLIGNKIDLEHMRTVKADKHQRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q L S VSA+TGD+ ++
Sbjct: 149 QENGLLSQFVSAKTGDSVYL 168
>gi|417397375|gb|JAA45721.1| Putative gtp-binding protein [Desmodus rotundus]
Length = 221
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T +ALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYTVVKKVSEESETQPLIALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|426343844|ref|XP_004038493.1| PREDICTED: ras-related protein Rab-28 isoform 1 [Gorilla gorilla
gorilla]
Length = 326
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 194 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 253
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 254 QENGFSSHFVSAKTGDSVFL 273
>gi|296196876|ref|XP_002746020.1| PREDICTED: ras-related protein Rab-28-like [Callithrix jacchus]
Length = 220
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|426343846|ref|XP_004038494.1| PREDICTED: ras-related protein Rab-28 isoform 2 [Gorilla gorilla
gorilla]
Length = 325
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 194 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 253
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 254 QENGFSSHFVSAKTGDSVFL 273
>gi|410038187|ref|XP_517110.4| PREDICTED: ras-related protein Rab-28 [Pan troglodytes]
Length = 274
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 142 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 201
Query: 91 QSLHLHSFAVSARTGDN 107
Q S VSA+TGD+
Sbjct: 202 QENGFSSHFVSAKTGDS 218
>gi|405978593|gb|EKC42971.1| Ras-related protein Rab-28 [Crassostrea gigas]
Length = 222
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
++ +YDIT+ SF ++ W + S P ++ALV NK D+EH R V +++H K
Sbjct: 89 ILLVYDITNIASFENVEDWYSCAKKVFGKDSKMP-HLALVGNKIDLEHMRTVKMDKHQKF 147
Query: 90 AQSLHLHSFAVSARTGDN 107
AQ + S VSA+TGDN
Sbjct: 148 AQERGMSSHFVSAKTGDN 165
>gi|426343848|ref|XP_004038495.1| PREDICTED: ras-related protein Rab-28 isoform 3 [Gorilla gorilla
gorilla]
Length = 310
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 194 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 253
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 254 QENGFSSHFVSAKTGDSVFL 273
>gi|148705629|gb|EDL37576.1| RAB28, member RAS oncogene family, isoform CRA_d [Mus musculus]
Length = 169
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 37 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFC 96
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 97 QENGFSSHFVSAKTGDSVFL 116
>gi|410957907|ref|XP_003985565.1| PREDICTED: ras-related protein Rab-28 isoform 1 [Felis catus]
Length = 221
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|16758874|ref|NP_446430.1| ras-related protein Rab-28 [Rattus norvegicus]
gi|1710025|sp|P51158.1|RAB28_RAT RecName: Full=Ras-related protein Rab-28; Flags: Precursor
gi|1154901|emb|CAA55340.1| ras-homologous GTPase rab28 [Rattus norvegicus]
gi|149047304|gb|EDL99973.1| RAB28, member RAS oncogene family, isoform CRA_b [Rattus
norvegicus]
gi|149047309|gb|EDL99978.1| RAB28, member RAS oncogene family, isoform CRA_b [Rattus
norvegicus]
Length = 221
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|431897221|gb|ELK06483.1| Ras-related protein Rab-28 [Pteropus alecto]
Length = 221
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYAVVKKVSEESETQPLVALVGNKIDLEHIRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|354491721|ref|XP_003508003.1| PREDICTED: ras-related protein Rab-28-like [Cricetulus griseus]
gi|344252867|gb|EGW08971.1| Ras-related protein Rab-28 [Cricetulus griseus]
Length = 221
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|66514595|ref|XP_623213.1| PREDICTED: ras-related protein Rab-3 isoform 2 [Apis mellifera]
Length = 269
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV+T ER +LA
Sbjct: 144 ILMYDITNEESFNSVQDWV--TQIKTYSCDNAQVILVGNKCDMEDERVITTERGKQLADQ 201
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 202 LGVQFFETSAK 212
>gi|149047303|gb|EDL99972.1| RAB28, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
gi|149047306|gb|EDL99975.1| RAB28, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
Length = 192
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|340729787|ref|XP_003403177.1| PREDICTED: ras-related protein Rab-3-like [Bombus terrestris]
Length = 270
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV+T ER +LA
Sbjct: 145 ILMYDITNEESFNSVQDWV--TQIKTYSCDNAQVILVGNKCDMEDERVITTERGKQLADQ 202
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 203 LGVQFFETSAK 213
>gi|149047307|gb|EDL99976.1| RAB28, member RAS oncogene family, isoform CRA_d [Rattus
norvegicus]
Length = 194
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|410957909|ref|XP_003985566.1| PREDICTED: ras-related protein Rab-28 isoform 2 [Felis catus]
Length = 220
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|149047308|gb|EDL99977.1| RAB28, member RAS oncogene family, isoform CRA_e [Rattus
norvegicus]
Length = 193
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|47938972|gb|AAH72512.1| Rab28 protein [Rattus norvegicus]
Length = 220
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|350411512|ref|XP_003489373.1| PREDICTED: ras-related protein Rab-3-like [Bombus impatiens]
Length = 270
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV+T ER +LA
Sbjct: 145 ILMYDITNEESFNSVQDWV--TQIKTYSCDNAQVILVGNKCDMEDERVITTERGKQLADQ 202
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 203 LGVQFFETSAK 213
>gi|348515407|ref|XP_003445231.1| PREDICTED: ras-related protein Rab-28-like [Oreochromis niloticus]
Length = 221
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + N +S ++LV NK D+EH R V ++H +
Sbjct: 89 VLLVYDITNYQSFENLEDWFSMVKKANEESDIQPVISLVGNKIDLEHMRTVKSDKHQRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q L S VSA+TGD+ ++
Sbjct: 149 QENGLISQFVSAKTGDSVYL 168
>gi|301767354|ref|XP_002919097.1| PREDICTED: ras-related protein Rab-28-like [Ailuropoda melanoleuca]
Length = 221
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
+ S VSA+TGD+ ++
Sbjct: 149 RENGFSSHFVSAKTGDSVFL 168
>gi|281339826|gb|EFB15410.1| hypothetical protein PANDA_007680 [Ailuropoda melanoleuca]
Length = 208
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 76 ILLVYDITNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFC 135
Query: 91 QSLHLHSFAVSARTGDNCWV 110
+ S VSA+TGD+ ++
Sbjct: 136 RENGFSSHFVSAKTGDSVFL 155
>gi|326919368|ref|XP_003205953.1| PREDICTED: ras-related protein Rab-28-like [Meleagris gallopavo]
Length = 398
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W ++ + +S VALV NK D+EH R V +++H +
Sbjct: 266 ILLVYDITNCQSFENLEDWYNVVKKVTEESEMQPLVALVGNKIDLEHMRTVKVDKHQRFC 325
Query: 91 QSLHLHSFAVSARTGDN 107
Q + S VSA+TGD+
Sbjct: 326 QENNFSSHFVSAKTGDS 342
>gi|47226163|emb|CAG08310.1| unnamed protein product [Tetraodon nigroviridis]
Length = 350
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + N +S V+L+ NK D+EH R V ++H +
Sbjct: 89 VLLVYDITNYQSFENLEDWFSMVKKANEESDVQPVVSLIGNKIDLEHMRTVKADKHQRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q L S VSA+TGD+ ++
Sbjct: 149 QENGLLSQFVSAKTGDSVYL 168
>gi|345484022|ref|XP_001599973.2| PREDICTED: ras-related protein Rab-3-like [Nasonia vitripennis]
Length = 256
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W L + S + LV NK DME +RV++ ER +LA+
Sbjct: 131 ILMYDITNEESFNSVQDW--LTQIKTYSWDNAQIILVGNKCDMEDERVISFERGKQLAEH 188
Query: 93 LHLHSFAVSARTGDN 107
L + F SA+ N
Sbjct: 189 LKVQFFETSAKENTN 203
>gi|91093088|ref|XP_969292.1| PREDICTED: similar to ras-related protein Rab-3C, putative
[Tribolium castaneum]
Length = 219
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV++ ER +LA+
Sbjct: 97 ILMYDITNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDERVISFERGKQLAEQ 154
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 155 LGVEFFETSAK 165
>gi|340501713|gb|EGR28462.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 585
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 23 LGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT 82
L D +C IV +D+T+ +S +I W+ + NR T Y LVANK D++ RV+T
Sbjct: 439 LRDANCAIIV---FDVTTKESLDNIDKWIKDYKDNR--GTEAYCVLVANKIDLKLSRVIT 493
Query: 83 LERHAKLAQSLHLHSFAVSARTGDN 107
E + AQSL++ + VSA++G+N
Sbjct: 494 TETAQQKAQSLNMPYYEVSAKSGEN 518
>gi|332016796|gb|EGI57617.1| Ras-related protein Rab-3 [Acromyrmex echinatior]
Length = 260
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV++ ER +LA+
Sbjct: 134 ILMYDITNEESFNSVQDWVT--QIKNYSWDNAQVILVGNKCDMEEERVISTERGKQLAEQ 191
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 192 LGVRFFETSAK 202
>gi|350412962|ref|XP_003489831.1| PREDICTED: ras-related protein Rab-28-like [Bombus impatiens]
Length = 239
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 31 IVIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
I++ +YD+T+ SF + W+D + L+ +A+V NK DMEHQR V +R K
Sbjct: 88 IILLVYDVTNSFSFEVLEEWIDKIRKLSDNYEERPLMAVVGNKCDMEHQRTVKKDRTHKF 147
Query: 90 AQSLHLHSFAVSARTGD--NCWVNTRTPEINPLKYLQSNNEYN---FLSMVG--FEAGTF 142
A S VSARTG+ + + T +I ++ +++ +Y+ ++ +G + T
Sbjct: 148 AADNGFPSHDVSARTGEAVSLCIVTLAAQILGVRLTKTDQDYHKPIIIAEIGDTVDMSTI 207
Query: 143 YMAVKRLTT 151
+ VKR+ T
Sbjct: 208 HKVVKRIPT 216
>gi|156543810|ref|XP_001606519.1| PREDICTED: ras-related protein Rab-28-like [Nasonia vitripennis]
Length = 242
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 31 IVIFMYDITSGQSFHSIPTWV-DLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
I++ +YD+T+ SF + W+ ++ L+ + +A+V NK DMEHQR V ER +
Sbjct: 88 IILLVYDVTNSSSFDILEEWIAEIRELSEDVDSMPMMAIVGNKCDMEHQRTVKRERSHRF 147
Query: 90 AQSLHLHSFAVSARTGDN---CWVN 111
A H +SARTG++ C VN
Sbjct: 148 AAENGFHYHDMSARTGESVSLCIVN 172
>gi|383854082|ref|XP_003702551.1| PREDICTED: ras-related protein Rab-3-like [Megachile rotundata]
Length = 264
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DM+ +RV++ ER +LA
Sbjct: 139 ILMYDITNEESFNSVQDWVT--QIKTYSCDNAQVILVGNKCDMDEERVISFERGKQLADQ 196
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 197 LGVQFFETSAK 207
>gi|90082481|dbj|BAE90422.1| unnamed protein product [Macaca fascicularis]
Length = 220
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ + DIT+ QSF ++ W + ++ +S T VALV NK D+EH R++ E+H +
Sbjct: 89 VLLVCDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRIIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>gi|270013048|gb|EFA09496.1| hypothetical protein TcasGA2_TC010990 [Tribolium castaneum]
Length = 297
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV++ ER +LA+
Sbjct: 175 ILMYDITNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDERVISFERGKQLAEQ 232
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 233 LGVEFFETSAK 243
>gi|322800183|gb|EFZ21268.1| hypothetical protein SINV_07541 [Solenopsis invicta]
Length = 220
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W+ + S V LV NK DME +RV++ ER +LA+
Sbjct: 94 ILMYDITNEESFNSVQDWIT--QIKNYSWDNAQVILVGNKCDMEEERVISTERGKQLAEQ 151
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 152 LGVRFFETSAK 162
>gi|242004797|ref|XP_002423263.1| RAB 3 and, putative [Pediculus humanus corporis]
gi|212506265|gb|EEB10525.1| RAB 3 and, putative [Pediculus humanus corporis]
Length = 255
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV++ ER +L++
Sbjct: 132 ILMYDITNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDERVISFERGKQLSEQ 189
Query: 93 LHLHSFAVSARTGDNC-WVNTRTPEINPLKYLQSNNEYNFLSMVGFEAGTFYMAVKRLTT 151
L + F SA+ N V R +I K +S + L G GT RLT
Sbjct: 190 LGIEFFETSAKENINVKAVFERLVDIICDKMSESLDSDPTLMAGGANKGT------RLTE 243
Query: 152 GPTVP 156
P P
Sbjct: 244 APQGP 248
>gi|308451532|ref|XP_003088707.1| hypothetical protein CRE_26006 [Caenorhabditis remanei]
gi|308246050|gb|EFO90002.1| hypothetical protein CRE_26006 [Caenorhabditis remanei]
Length = 260
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSS-TPTYVALVANKGDMEHQRVVTLERHAKL 89
IV F+YD+T+ +SF ++ W+ + N K S + L+ NK D+E +RVV ++ H
Sbjct: 111 IVFFVYDVTNSKSFENVGDWLSVVKKNLKGSENDVKLVLMGNKTDLEERRVVPVDSHRNF 170
Query: 90 AQSLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSNNE 128
+ S ++ VSA+TGD ++ R + LK S E
Sbjct: 171 SNSNNMMPTYVSAKTGDTVYMIFRQAVADCLKIGLSRAE 209
>gi|308477986|ref|XP_003101205.1| CRE-RAB-28 protein [Caenorhabditis remanei]
gi|308263910|gb|EFP07863.1| CRE-RAB-28 protein [Caenorhabditis remanei]
Length = 267
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSS-TPTYVALVANKGDMEHQRVVTLERHAKL 89
IV F+YD+T+ +SF ++ W+ + N K S + L+ NK D+E +RVV ++ H
Sbjct: 111 IVFFVYDVTNSKSFENVGDWLSVVKKNLKGSENDVKLVLMGNKTDLEERRVVPVDSHRNF 170
Query: 90 AQSLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSNNE 128
+ S ++ VSA+TGD ++ R + LK S E
Sbjct: 171 SNSNNMMPTYVSAKTGDTVYMIFRQAVADCLKIGLSRAE 209
>gi|241997950|ref|XP_002433618.1| synaptic vesicle-associated GTP-binding protein, putative [Ixodes
scapularis]
gi|215495377|gb|EEC05018.1| synaptic vesicle-associated GTP-binding protein, putative [Ixodes
scapularis]
Length = 219
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF+S+ WV + S V LV NK DME +RVV+ ER +LA
Sbjct: 98 ILMYDVTNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDERVVSTERGKQLADQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|157112793|ref|XP_001651875.1| ras-related protein Rab-3C, putative [Aedes aegypti]
gi|108877951|gb|EAT42176.1| AAEL006267-PA [Aedes aegypti]
Length = 219
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV++ ER +LA
Sbjct: 97 ILMYDITNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDERVISFERGKQLADQ 154
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 155 LGVEFFETSAK 165
>gi|170049010|ref|XP_001853751.1| GTP-binding protein Rab-3D [Culex quinquefasciatus]
gi|167870968|gb|EDS34351.1| GTP-binding protein Rab-3D [Culex quinquefasciatus]
Length = 219
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV++ ER +LA
Sbjct: 97 ILMYDITNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDERVISFERGKQLADQ 154
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 155 LGVEFFETSAK 165
>gi|339250014|ref|XP_003373992.1| GTP-binding protein Rab-3D [Trichinella spiralis]
gi|316969762|gb|EFV53812.1| GTP-binding protein Rab-3D [Trichinella spiralis]
Length = 218
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 96 ILMYDITNEESFNSVQDWCT--QIKTYSWDNAQVVLVGNKCDMEDERVVSYERGKQLADQ 153
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 154 LGLEFFEASAK 164
>gi|260812870|ref|XP_002601143.1| hypothetical protein BRAFLDRAFT_279031 [Branchiostoma floridae]
gi|229286434|gb|EEN57155.1| hypothetical protein BRAFLDRAFT_279031 [Branchiostoma floridae]
Length = 224
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + + + + ++ALVANK D+EH R V E+H + A
Sbjct: 89 ILLVYDITNYQSFDNLEDWYEKIREVCKDQPKLPHIALVANKSDLEHMRTVKQEKHQRFA 148
Query: 91 QSLHLHSFAVSARTGDN 107
S VSA+TGD+
Sbjct: 149 TENGFTSHFVSAKTGDS 165
>gi|307176945|gb|EFN66251.1| Ras-related protein Rab-3 [Camponotus floridanus]
Length = 258
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W+ + S V LV NK DME +RV++ ER +LA+
Sbjct: 133 ILMYDITNEESFNSVQDWIT--QIKNYSWDNAQVILVGNKCDMEEERVISSERGKQLAEQ 190
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 191 LGVRFFETSAK 201
>gi|195120790|ref|XP_002004904.1| GI20173 [Drosophila mojavensis]
gi|193909972|gb|EDW08839.1| GI20173 [Drosophila mojavensis]
Length = 220
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF+S+ WV + S V LV NK DME QRV++ ER +LA
Sbjct: 98 ILMYDVTNEDSFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQ 155
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 156 LGVEFFETSAK 166
>gi|195383704|ref|XP_002050566.1| GJ20130 [Drosophila virilis]
gi|194145363|gb|EDW61759.1| GJ20130 [Drosophila virilis]
Length = 220
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF+S+ WV + S V LV NK DME QRV++ ER +LA
Sbjct: 98 ILMYDVTNEDSFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQ 155
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 156 LGVEFFETSAK 166
>gi|195066090|ref|XP_001996775.1| GH24197 [Drosophila grimshawi]
gi|193892005|gb|EDV90871.1| GH24197 [Drosophila grimshawi]
Length = 220
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF+S+ WV + S V LV NK DME QRV++ ER +LA
Sbjct: 98 ILMYDVTNEDSFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQ 155
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 156 LGVEFFETSAK 166
>gi|195429579|ref|XP_002062835.1| GK19661 [Drosophila willistoni]
gi|194158920|gb|EDW73821.1| GK19661 [Drosophila willistoni]
Length = 220
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF+S+ WV + S V LV NK DME QRV++ ER +LA
Sbjct: 98 ILMYDVTNEDSFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQ 155
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 156 LGVEFFETSAK 166
>gi|427787355|gb|JAA59129.1| Putative rab-protein 3 [Rhipicephalus pulchellus]
Length = 221
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF+S+ WV + S V LV NK DME +RVV+ ER +LA
Sbjct: 98 ILMYDVTNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDERVVSAERGRQLADQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|31210411|ref|XP_314172.1| AGAP005255-PA [Anopheles gambiae str. PEST]
gi|30176728|gb|EAA09493.2| AGAP005255-PA [Anopheles gambiae str. PEST]
Length = 221
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV++ ER +LA
Sbjct: 98 ILMYDITNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDERVISFERGKQLADQ 155
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 156 LGVEFFETSAK 166
>gi|229594642|ref|XP_001033234.3| Ras family protein [Tetrahymena thermophila]
gi|225566726|gb|EAR85571.3| Ras family protein [Tetrahymena thermophila SB210]
gi|307777756|dbj|BAJ21274.1| Rab-family small GTPase Rab1F [Tetrahymena thermophila]
Length = 211
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++D+T Q+F + W D N K+ + LV NK D+E QR VT E LAQ
Sbjct: 86 CLIVFDLTDRQTFQDVYKWFDKCKQNAKNEVK--LILVGNKADLEEQRAVTYEEACNLAQ 143
Query: 92 SLHLHSFAVSARTG---DNCWVNTRTPEINPLKYLQSNNEYNF 131
L + SA++ D C++ I +Y++ N + F
Sbjct: 144 ELDMQYIETSAKSKQNVDQCFIQLSQDLIQ--QYIKQNKQIQF 184
>gi|17737457|ref|NP_523687.1| Rab3 [Drosophila melanogaster]
gi|194884193|ref|XP_001976180.1| GG22724 [Drosophila erecta]
gi|195333207|ref|XP_002033283.1| GM20500 [Drosophila sechellia]
gi|195483658|ref|XP_002090378.1| GE13081 [Drosophila yakuba]
gi|131800|sp|P25228.1|RAB3_DROME RecName: Full=Ras-related protein Rab-3
gi|158193|gb|AAA28843.1| rab3 [Drosophila melanogaster]
gi|7303712|gb|AAF58762.1| Rab3 [Drosophila melanogaster]
gi|16648446|gb|AAL25488.1| LP05860p [Drosophila melanogaster]
gi|40788408|dbj|BAD07037.1| Rab3 [Drosophila melanogaster]
gi|190659367|gb|EDV56580.1| GG22724 [Drosophila erecta]
gi|194125253|gb|EDW47296.1| GM20500 [Drosophila sechellia]
gi|194176479|gb|EDW90090.1| GE13081 [Drosophila yakuba]
gi|220947366|gb|ACL86226.1| Rab3-PA [synthetic construct]
gi|220956828|gb|ACL90957.1| Rab3-PA [synthetic construct]
Length = 220
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF+S+ WV + S V LV NK DME QRV++ ER +LA
Sbjct: 98 ILMYDVTNEDSFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQ 155
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 156 LGVEFFETSAK 166
>gi|340503282|gb|EGR29885.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 213
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 23 LGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT 82
L D +C IV +DIT SF ++ W+ + NR P LVANK DM+ R VT
Sbjct: 91 LRDATCAVIV---FDITQKTSFDNLDKWIQDYKDNRGIDAP--FILVANKLDMKLSREVT 145
Query: 83 LERHAKLAQSLHLHSFAVSARTGDN 107
+ + AQS+ ++ + +SA+TG+N
Sbjct: 146 QQEAEQKAQSIRVNYYEISAKTGEN 170
>gi|427787329|gb|JAA59116.1| Putative rab-protein 3 [Rhipicephalus pulchellus]
Length = 221
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF+S+ WV + S V LV NK DME +RVV+ ER +LA
Sbjct: 98 ILMYDVTNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDERVVSAERGRQLADQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|125811091|ref|XP_001361745.1| GA20450 [Drosophila pseudoobscura pseudoobscura]
gi|194758000|ref|XP_001961250.1| GF11093 [Drosophila ananassae]
gi|195153505|ref|XP_002017666.1| GL17187 [Drosophila persimilis]
gi|54636921|gb|EAL26324.1| GA20450 [Drosophila pseudoobscura pseudoobscura]
gi|190622548|gb|EDV38072.1| GF11093 [Drosophila ananassae]
gi|194113462|gb|EDW35505.1| GL17187 [Drosophila persimilis]
Length = 220
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF+S+ WV + S V LV NK DME QRV++ ER +LA
Sbjct: 98 ILMYDVTNEDSFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQ 155
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 156 LGVEFFETSAK 166
>gi|307207614|gb|EFN85274.1| Ras-related protein Rab-3 [Harpegnathos saltator]
Length = 222
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RV++ ER +LA+
Sbjct: 97 ILMYDITNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEEERVISSERGRQLAEQ 154
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 155 LGVRFFETSAK 165
>gi|357620191|gb|EHJ72475.1| putative RAB28, member RAS oncogene family [Danaus plexippus]
Length = 281
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
I+IF+YD+T+ QSF + W++ L+ + P +AL NK D+EHQR V L K
Sbjct: 85 ILIFVYDLTNLQSFERLKLWMEKVKQILDSEKKKP-LMALFGNKSDLEHQRAVRLSCVQK 143
Query: 89 LAQSLHLHSFAVSARTGD 106
A L ++ SARTG+
Sbjct: 144 FASEYFLENYKGSARTGE 161
>gi|290993961|ref|XP_002679601.1| rab family small GTPase [Naegleria gruberi]
gi|284093218|gb|EFC46857.1| rab family small GTPase [Naegleria gruberi]
Length = 161
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSST-PTYVALVANKGDMEHQRVVTLERHAKL 89
+V +YD+TS +SF S+ +W+ F S T P Y+ LV NK D+ QRVV+ E L
Sbjct: 70 LVFLVYDVTSRKSFESVKSWLLDFQTYSNSDTCPPYITLVGNKMDLRDQRVVSREEGEIL 129
Query: 90 AQSLHLHSF---AVSARTGDN 107
+ L L +F +VS G N
Sbjct: 130 KKELELDAFYECSVSTNNGVN 150
>gi|341900426|gb|EGT56361.1| CBN-RAB-3 protein [Caenorhabditis brenneri]
Length = 219
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV++ER +LA
Sbjct: 99 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDAERVVSMERGRQLADQ 156
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 157 LGLEFFETSAK 167
>gi|340500436|gb|EGR27313.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 201
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 23 LGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT 82
L D +C IV +D+T+ +SF + W+ + NR + P LVANK D + QR ++
Sbjct: 90 LRDATCAVIV---FDVTNKESFSNTERWIKDYKDNRGAEAP--CILVANKIDQKLQREIS 144
Query: 83 LERHAKLAQSLHLHSFAVSARTGDN 107
E K A+S ++ + +SA+TG+N
Sbjct: 145 QEDGEKKAKSFEMNYYEISAKTGEN 169
>gi|312071697|ref|XP_003138728.1| rab family protein 3 [Loa loa]
gi|307766114|gb|EFO25348.1| Ras-like protein Rab-3 [Loa loa]
Length = 221
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV+ ER +LA
Sbjct: 100 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDDERVVSCERGKQLADQ 157
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 158 LGLEFFETSAK 168
>gi|341881403|gb|EGT37338.1| hypothetical protein CAEBREN_30856 [Caenorhabditis brenneri]
Length = 283
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV++ER +LA
Sbjct: 163 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDAERVVSMERGRQLADQ 220
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 221 LGLEFFETSAK 231
>gi|380028583|ref|XP_003697974.1| PREDICTED: ras-related protein Rab-28-like [Apis florea]
Length = 239
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 31 IVIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
I++ +YD+T+ SF + W+D + L+ +A+V NK DMEHQR V +R K
Sbjct: 88 IILLVYDVTNSFSFEVLEEWIDKIRKLSSNYEETPLMAVVGNKCDMEHQRTVKKDRTHKF 147
Query: 90 AQSLHLHSFAVSARTGD--NCWVNTRTPEINPLKYLQSNNEYN---FLSMVG--FEAGTF 142
A S VSARTG+ + + T +I ++ +++ +Y+ ++ +G + T
Sbjct: 148 AADNGFPSHDVSARTGEAVSLCIVTLAAQILGVRLTKTDQDYHKPIIIAEIGDTVDMNTV 207
Query: 143 YMAVKRLTT 151
VKR+ T
Sbjct: 208 QKVVKRIPT 216
>gi|313220927|emb|CBY31762.1| unnamed protein product [Oikopleura dioica]
gi|313226508|emb|CBY21653.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ SF+++ W + S V LVANK DME++RVV+ ER +LA+
Sbjct: 96 ILMYDITNEDSFNAVQDWAT--QIKTYSWDSAKVMLVANKADMENERVVSTERGEELARQ 153
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 154 LGFDFFETSAK 164
>gi|123396834|ref|XP_001300975.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121882094|gb|EAX88045.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 197
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YDITS SF + W++ + S +YV LV NK D+E QR V+ + + A
Sbjct: 80 VLLVYDITSLDSFDELMQWLN--DIQTLCSPNSYVLLVGNKSDLESQRKVSPNQVEQFAT 137
Query: 92 SLHLHSFAVSARTGDN 107
S HL S SA++GDN
Sbjct: 138 SNHLESIVTSAQSGDN 153
>gi|324522597|gb|ADY48087.1| Ras-related protein Rab-3 [Ascaris suum]
Length = 254
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV+ ER +LA
Sbjct: 133 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDDERVVSFERGRQLADQ 190
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 191 LGLEFFETSAK 201
>gi|432876709|ref|XP_004073074.1| PREDICTED: ras-related protein Rab-28-like [Oryzias latipes]
Length = 221
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHL-NRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + N +S + LV NK D+EH R V ++H +
Sbjct: 89 VLLVYDITNYQSFENLEDWFSMVKKSNEESDIQPIMFLVGNKIDLEHIRTVKADKHQRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q L S VSA+TGD+ ++
Sbjct: 149 QENGLLSQFVSAKTGDSVYL 168
>gi|357613110|gb|EHJ68321.1| ras-related GTP-binding protein Rab3 [Danaus plexippus]
Length = 155
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RVV+ ER +LA
Sbjct: 33 ILMYDITNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEEERVVSSERGRQLADQ 90
Query: 93 LHLHSFAVSAR 103
L + + SA+
Sbjct: 91 LGVEFYETSAK 101
>gi|403373891|gb|EJY86873.1| Ras-related protein rab28-like protein [Oxytricha trifallax]
Length = 243
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI +YDIT+ QSF + W++L + + L+ NK D+ H + V ++H + A+
Sbjct: 104 VILVYDITNQQSFQDLDDWLNLVRQSFVGKEMPLLVLMGNKIDLNHMQAVKSDQHDQFAK 163
Query: 92 SLHLHSFAVSARTGDN 107
L+SF VSA++GD
Sbjct: 164 QNGLYSFYVSAKSGDQ 179
>gi|112983326|ref|NP_001037620.1| ras-related GTP-binding protein Rab3 [Bombyx mori]
gi|102993253|gb|ABF71469.1| ras-related GTP-binding protein Rab3 [Bombyx mori]
Length = 218
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ WV + S V LV NK DME +RVV+ ER +LA
Sbjct: 96 ILMYDITNEESFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEEERVVSAERGRQLADQ 153
Query: 93 LHLHSFAVSAR 103
L + + SA+
Sbjct: 154 LGVEFYETSAK 164
>gi|432105575|gb|ELK31772.1| Ras-related protein Rab-3C [Myotis davidii]
Length = 219
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+G+SF+++ W + S V LV NK DME +RVV++ER L +
Sbjct: 99 ILMYDITNGESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVVSVERGQHLGEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|321453282|gb|EFX64533.1| hypothetical protein DAPPUDRAFT_304534 [Daphnia pulex]
Length = 219
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDIT+ +SF+S+ W + S V LV NK DME +RV++ ER +LA
Sbjct: 98 LLMYDITNEESFNSVQDWCT--QIKTYSWDNAQVILVGNKCDMEDERVISYERGKQLADQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|399163141|gb|AFP33146.1| rab-3, partial [Caenorhabditis elegans]
Length = 218
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV+++R +LA
Sbjct: 98 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|71982452|ref|NP_001021974.1| Protein RAB-3, isoform b [Caenorhabditis elegans]
gi|55976564|sp|Q94986.1|RAB3_CAEEL RecName: Full=Ras-related protein Rab-3
gi|1619869|gb|AAB16980.1| RAB-3 [Caenorhabditis elegans]
gi|1619871|gb|AAB16981.1| RAB-3, partial [Caenorhabditis elegans]
gi|40788400|dbj|BAD07033.1| Rab3 [Caenorhabditis elegans]
gi|373219016|emb|CCD65021.1| Protein RAB-3, isoform b [Caenorhabditis elegans]
Length = 219
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV+++R +LA
Sbjct: 99 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQ 156
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 157 LGLEFFETSAK 167
>gi|71982447|ref|NP_001021973.1| Protein RAB-3, isoform a [Caenorhabditis elegans]
gi|373219015|emb|CCD65020.1| Protein RAB-3, isoform a [Caenorhabditis elegans]
Length = 233
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV+++R +LA
Sbjct: 113 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQ 170
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 171 LGLEFFETSAK 181
>gi|158634606|gb|ABW76149.1| Rab3 [Aiptasia pulchella]
Length = 221
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF ++ W + S V LV NK DME +RVV+ +R +LA
Sbjct: 98 ILMYDITNEESFQAVQDWSS--QVKTYSWANAQVILVGNKCDMEDERVVSFDRGKQLADQ 155
Query: 93 LHLHSFAVSARTGDN 107
L L F SA+ N
Sbjct: 156 LGLEFFETSAKGNTN 170
>gi|268531330|ref|XP_002630791.1| C. briggsae CBR-RAB-3 protein [Caenorhabditis briggsae]
Length = 219
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV+++R +LA
Sbjct: 99 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDAERVVSMDRGRQLADQ 156
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 157 LGLEFFETSAK 167
>gi|308493695|ref|XP_003109037.1| CRE-RAB-3 protein [Caenorhabditis remanei]
gi|308247594|gb|EFO91546.1| CRE-RAB-3 protein [Caenorhabditis remanei]
Length = 280
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV+++R +LA
Sbjct: 160 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQ 217
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 218 LGLEFFETSAK 228
>gi|198436228|ref|XP_002119506.1| PREDICTED: similar to Rab3 [Ciona intestinalis]
Length = 220
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DME +RV++ ER +LA
Sbjct: 99 ILMYDITNEESFNSVQDWST--QIKTYSWDNAQVTLVGNKCDMEDERVISTERGKQLADQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|328791722|ref|XP_001120659.2| PREDICTED: ras-related protein Rab-28-like [Apis mellifera]
Length = 182
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
I++ +YD+T+ SF + W+D + L+ +A+V NK DMEHQR V +R K
Sbjct: 88 IILLVYDVTNSFSFEVLEEWIDKIRKLSSNYEETPLMAVVGNKCDMEHQRTVKKDRTHKF 147
Query: 90 AQSLHLHSFAVSARTGD 106
A S VSARTG+
Sbjct: 148 AADNGFPSHDVSARTGE 164
>gi|440548636|gb|AGC10823.1| Rab-3 [Eriocheir sinensis]
Length = 209
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DME +RV++ ER +LA
Sbjct: 98 ILMYDITNEESFNSVQDWCT--QIKTYSWDNAQVILVGNKCDMEDERVISYERGKQLADQ 155
Query: 93 LHLHSFAVSAR 103
L L + SA+
Sbjct: 156 LGLEFYETSAK 166
>gi|7496249|pir||T15546 hypothetical protein C18A3.6 - Caenorhabditis elegans
Length = 343
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV+++R +LA
Sbjct: 164 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQ 221
Query: 93 LHLHSFAVSARTGDN 107
L L F SA+ N
Sbjct: 222 LGLEFFETSAKENIN 236
>gi|50582491|dbj|BAD32700.1| Rab3 [Doryteuthis pealeii]
Length = 220
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF+++ W + S V LV NK D+E +RVV+ ER +LA
Sbjct: 99 ILMYDVTNEESFNAVQDWCT--QIKTYSWDNAQVVLVGNKCDLEEERVVSTERGKQLADQ 156
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 157 LGLEFFETSAK 167
>gi|1845598|gb|AAB47925.1| Rab3 [Doryteuthis pealeii]
Length = 220
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF+++ W + S V LV NK D+E +RVV+ ER +LA
Sbjct: 98 ILMYDVTNEESFNAVQDWCT--QIKTYSWDNAQVVLVGNKCDLEEERVVSTERGKQLADQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|440297653|gb|ELP90310.1| hypothetical protein EIN_505160 [Entamoeba invadens IP1]
Length = 167
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 24 GDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTL 83
G SC + +YDITS +SF S+ W +L N + T V +V K D+E +R V++
Sbjct: 84 GAKSC----MIVYDITSKESFCSVEEWYNLLKDNIEDVNKTVVMIVGTKTDLEDKREVSV 139
Query: 84 ERHAKLAQSLHLHSFAVSARTGDN 107
+ KL+Q L V+++ G++
Sbjct: 140 DEGVKLSQKLECLFMEVTSKEGES 163
>gi|443685362|gb|ELT88996.1| hypothetical protein CAPTEDRAFT_149846 [Capitella teleta]
Length = 218
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF ++ W + S V LV NK D+E +RVV+ +R +LA+
Sbjct: 98 ILMYDVTNEESFQAVQDWCT--QIKTYSWDNAQVVLVGNKCDLEDERVVSFDRGKQLAEQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|146161427|ref|XP_001471098.1| conserved hypothetical protein [Tetrahymena thermophila]
gi|146146768|gb|EDK32063.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
Length = 285
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
IV+ YDIT+ QSF + W + ++ +K + + L+ NK D+E QR V+ + +LA
Sbjct: 194 IVMISYDITNRQSFDRVQFWFEDYN-QKKQNKVALLVLIGNKYDLEQQRKVSQKEGKQLA 252
Query: 91 QSLHLHSFAVSARTG 105
SL + F VS++TG
Sbjct: 253 NSLGMLFFEVSSKTG 267
>gi|294888433|ref|XP_002772463.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
gi|239876689|gb|EER04279.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
Length = 215
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D++S +SF+S+ +WVD + ++ + LV NK DM R V+ E + LA+
Sbjct: 96 VVVFDLSSKESFNSVRSWVDQVRDEKGTNGGVEIVLVGNKADMADLRQVSNEEASALAEE 155
Query: 93 LHLHSFAVSARTG 105
L L F SA++G
Sbjct: 156 LGLKYFETSAKSG 168
>gi|391330041|ref|XP_003739473.1| PREDICTED: ras-related protein Rab-3-like [Metaseiulus
occidentalis]
Length = 218
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF + WV + S V LV NK DME +RVV+ +R +LA+
Sbjct: 94 ILMYDVTNEDSFKCVQDWVT--QIKTYSWDNAQVVLVGNKCDMEDERVVSTDRGRQLAEQ 151
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 152 LGLEFFETSAK 162
>gi|391337574|ref|XP_003743142.1| PREDICTED: intraflagellar transport protein 27 homolog [Metaseiulus
occidentalis]
Length = 183
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSST---PTYVALVANKGDMEHQRVVTLERHA 87
++I YD+TS SF S+ W H +T PT+ L+A K D+ ++R VTL +
Sbjct: 80 LIIVAYDVTSEASFRSVKDW----HTRCTKATQEHPTFGVLLACKTDLSNRRTVTLAQGE 135
Query: 88 KLAQSLHLHSFAVSARTGDN 107
LA+ L L F SAR G N
Sbjct: 136 SLAKELGLQYFECSARDGSN 155
>gi|307777846|dbj|BAJ21319.1| Rab-family small GTPase RabX1A [Tetrahymena thermophila]
Length = 173
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
IV+ YDIT+ QSF + W + ++ +K + + L+ NK D+E QR V+ + +LA
Sbjct: 82 IVMISYDITNRQSFDRVQFWFEDYN-QKKQNKVALLVLIGNKYDLEQQRKVSQKEGKQLA 140
Query: 91 QSLHLHSFAVSARTG 105
SL + F VS++TG
Sbjct: 141 NSLGMLFFEVSSKTG 155
>gi|397776464|gb|AFO64930.1| Rab3 [Ruditapes philippinarum]
Length = 219
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF+++ W + S V LV NK D+E +RVV+ ER +LA
Sbjct: 98 ILMYDVTNEESFNAVQDWCT--QIKTYSWDNAQVVLVGNKCDLEDERVVSTERGKQLADQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|162760|gb|AAA30416.1| GTP-binding protein [Bos taurus]
Length = 220
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + SS V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSSDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|89258437|gb|ABD65442.1| Rab28 [Suberites domuncula]
Length = 226
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
V+ +YDIT+ SF ++ W+ K S P ++ALVANK D+EH R V ERH
Sbjct: 91 VLLVYDITNYSSFENLDDWLAAVTKVFTEKESLP-HIALVANKLDLEHTRTVRKERHNSF 149
Query: 90 AQSLHLHSFAVSARTGD 106
A+ + S VSA+T D
Sbjct: 150 AKQHKMSSHFVSAKTDD 166
>gi|325183060|emb|CCA17515.1| ras family GTPase putative [Albugo laibachii Nc14]
Length = 210
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 11 NDNYEIQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVA 70
++N + L++ +G S G ++ Y I Q+ W L + Y+ALV
Sbjct: 60 SENTPVTLQIWDIGGQSIGGKMLRNY-INGAQNSED---WYQLVWRTFGQDSLPYIALVG 115
Query: 71 NKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGD 106
NK D+ H R V E+H + HLHSF VSA+TGD
Sbjct: 116 NKSDLNHIRAVEDEKHKQFVAESHLHSFQVSAKTGD 151
>gi|294896680|ref|XP_002775678.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
gi|239881901|gb|EER07494.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
Length = 188
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D++S +SF+S+ +WVD + ++ + LV NK DM R V+ E LA+
Sbjct: 69 VVVFDLSSKESFNSVRSWVDQVRDEKGTNGGVEIVLVGNKADMADLRQVSNEEANALAEE 128
Query: 93 LHLHSFAVSARTG 105
L L F SA++G
Sbjct: 129 LGLKYFETSAKSG 141
>gi|260821258|ref|XP_002605950.1| hypothetical protein BRAFLDRAFT_253798 [Branchiostoma floridae]
gi|229291287|gb|EEN61960.1| hypothetical protein BRAFLDRAFT_253798 [Branchiostoma floridae]
Length = 218
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF+S+ W + S V LV NK D+E +RV++ ER +LA
Sbjct: 98 ILMYDVTNEDSFNSVQDWCT--QIKTYSWDNAQVVLVGNKCDLEDERVISTERGKQLADQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|325297096|ref|NP_001191556.1| Rab3 [Aplysia californica]
gi|392973|gb|AAA03315.1| Rab3 [Aplysia californica]
Length = 219
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDIT+ +SF+++ W + S V LV NK D+E +RVV+ ER +LA
Sbjct: 98 LLMYDITNEESFNAVQDWCT--QIKTYSWDNAQVVLVGNKCDLEDERVVSTERGKQLADQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|307777906|dbj|BAJ21349.1| Rab-family small GTPase RabX1D [Tetrahymena thermophila]
Length = 173
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
IV+ YDIT+ QSF W ++ +KS+ +AL+ NK D+E QR V+ +LA
Sbjct: 82 IVMISYDITNRQSFVGAQQWFKDYN-QKKSNKVAVLALIGNKCDLEQQRKVSYIEGKQLA 140
Query: 91 QSLHLHSFAVSARTG 105
SL + F VS++TG
Sbjct: 141 NSLGMLFFEVSSKTG 155
>gi|225710138|gb|ACO10915.1| Ras-related protein Rab-3 [Caligus rogercresseyi]
Length = 217
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF+ + W + S V LV NK DME +RV++ ER +LA S
Sbjct: 98 ILMYDVTNEDSFNHVHDWCT--QIKTYSWDNAQVILVGNKCDMEDERVISFERGKQLADS 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|145534476|ref|XP_001452982.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834215|emb|CAI44484.1| rab_A75 [Paramecium tetraurelia]
gi|124420682|emb|CAK85585.1| unnamed protein product [Paramecium tetraurelia]
Length = 215
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + YD+ QSF S+ W++ L R + + LVANK D+E+ RVV+ E+ A LA
Sbjct: 89 VAVVCYDVEVKQSFDSVAKWIEDVRLERGNDVIIF--LVANKIDLEN-RVVSTEQGAALA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ H VSA++G N
Sbjct: 146 KEQDAHFIEVSAKSGSN 162
>gi|268535478|ref|XP_002632872.1| C. briggsae CBR-RAB-28 protein [Caenorhabditis briggsae]
Length = 262
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSS-TPTYVALVANKGDMEHQRVVTLERHAKL 89
I+ +YD+T+ +SF + W+++ N K P + L+ NK D+E +R V ++ H
Sbjct: 127 IIFLVYDVTNSKSFENAADWMNVIRKNLKDEENPPRIILLGNKTDLEERRTVPVDTHRNF 186
Query: 90 AQSLHLHSFAVSARTGDNCWVNTR 113
A S + +SA+TGD ++ R
Sbjct: 187 ATSNGMVPTYISAKTGDTVYMTFR 210
>gi|340508515|gb|EGR34204.1| Ras-related protein Rab-2 [Ichthyophthirius multifiliis]
Length = 205
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 29 GKIVIFM-YDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G I F+ YDIT+ QSF ++ W+D +N S+ + L+ NK D+ + R V +
Sbjct: 78 GSICAFLVYDITNRQSFQNVANWLD--EINNYSNEKITIILIGNKSDLGNNRQVQFQEGQ 135
Query: 88 KLAQSLHLHSFAVSARTGDN 107
+ A S ++ SA+ G+N
Sbjct: 136 QFADSFNIQFIETSAKQGEN 155
>gi|443686970|gb|ELT90087.1| hypothetical protein CAPTEDRAFT_55121, partial [Capitella teleta]
Length = 169
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLF--HLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
K ++ +YD+T SF ++ W+D L+R + P V +V NK D+E RVV+ +
Sbjct: 77 KGLLLVYDVTDRTSFETLGYWLDSIDSELDRNNKEPVPVFIVGNKTDLEESRVVSTQEGK 136
Query: 88 KLAQSLHLHSF-AVSARTGDNC 108
K A+S ++H F SA+ G N
Sbjct: 137 KAAESHYVHGFLETSAKNGHNV 158
>gi|67466429|ref|XP_649362.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56465788|gb|EAL43980.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790094|dbj|BAD82843.1| small GTPase EhRabK2 [Entamoeba histolytica]
gi|449707799|gb|EMD47391.1| small GTPase EhRabK2, putative [Entamoeba histolytica KU27]
Length = 209
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++FM+D+T+ +SF I W+++F+ + T + LV NK DM +R V+ E A+
Sbjct: 81 ILFMFDVTNSESFTHIEDWMEVFYEIQNEDKKTLLVLVGNKNDMIAERQVSPEDAKDFAK 140
Query: 92 SLHLHSFAVSARTGDN 107
S +++ F SA+ N
Sbjct: 141 SHNINYFECSAKENIN 156
>gi|146161425|ref|XP_001007113.2| hypothetical protein TTHERM_00207240 [Tetrahymena thermophila]
gi|146146767|gb|EAR86868.2| hypothetical protein TTHERM_00207240 [Tetrahymena thermophila
SB210]
Length = 276
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
IV+ YDIT+ QSF W ++ +KS+ +AL+ NK D+E QR V+ +LA
Sbjct: 185 IVMISYDITNRQSFVGAQQWFKDYN-QKKSNKVAVLALIGNKCDLEQQRKVSYIEGKQLA 243
Query: 91 QSLHLHSFAVSARTG 105
SL + F VS++TG
Sbjct: 244 NSLGMLFFEVSSKTG 258
>gi|156366233|ref|XP_001627044.1| predicted protein [Nematostella vectensis]
gi|156213941|gb|EDO34944.1| predicted protein [Nematostella vectensis]
Length = 221
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF ++ W + S V LV NK DME +RVV+ +R +LA
Sbjct: 98 ILMYDITNEESFQAVQDWST--QVKTYSWANAQVILVGNKCDMEEERVVSYDRGKQLADQ 155
Query: 93 LHLHSFAVSARTGDN 107
L L + SA+ N
Sbjct: 156 LGLEFYETSAKDNTN 170
>gi|145525809|ref|XP_001448721.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416276|emb|CAK81324.1| unnamed protein product [Paramecium tetraurelia]
Length = 208
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +Y + QSF I W++ N K T + L+ANK D+E QRV++ ++ LA
Sbjct: 86 VLLVYAVDDIQSFKEITFWMNSLKQNGK--TDLAIVLIANKCDLEEQRVISKQQGEDLAN 143
Query: 92 SLHLHSFAVSARTGDNCW 109
L + F SA+ G N +
Sbjct: 144 QLGIEYFETSAKIGKNVY 161
>gi|74833688|emb|CAI39323.1| rab_C04 [Paramecium tetraurelia]
Length = 199
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +Y + QSF I W++ N K T + L+ANK D+E QRV++ ++ LA
Sbjct: 77 VLLVYAVDDIQSFKEITFWMNSLKQNGK--TDLAIVLIANKCDLEEQRVISKQQGEDLAN 134
Query: 92 SLHLHSFAVSARTGDNCW 109
L + F SA+ G N +
Sbjct: 135 QLGIEYFETSAKIGKNVY 152
>gi|119624313|gb|EAX03908.1| FLJ43093 protein, isoform CRA_a [Homo sapiens]
gi|119624315|gb|EAX03910.1| FLJ43093 protein, isoform CRA_a [Homo sapiens]
Length = 101
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDITS +SF + W+D L S + L+ NK D E +R V++E +LAQ
Sbjct: 12 VVLMYDITSQESFAHVRYWLDC--LQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQ 69
Query: 92 SLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQS 125
L ++ SA G N P +N + LQ
Sbjct: 70 ELGVYFGECSAALGH----NILEPVVNLARSLQD 99
>gi|260783603|ref|XP_002586863.1| hypothetical protein BRAFLDRAFT_285607 [Branchiostoma floridae]
gi|229271991|gb|EEN42874.1| hypothetical protein BRAFLDRAFT_285607 [Branchiostoma floridae]
Length = 208
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ MYDIT SF + W L ++ + SST + LV NK DME+ RVV L R KLA+
Sbjct: 87 ILLMYDITGETSFIDLAKW--LRNIEQNSSTDVQLLLVGNKCDMEN-RVVELARAQKLAE 143
Query: 92 SLHLHSFAVSARTGDN 107
S L SA+ N
Sbjct: 144 SFDLELIEASAKENIN 159
>gi|156393822|ref|XP_001636526.1| predicted protein [Nematostella vectensis]
gi|156223630|gb|EDO44463.1| predicted protein [Nematostella vectensis]
Length = 165
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI YDIT+ +SF S+P W+D NR +S +A+V NK D+ R V LA+
Sbjct: 83 VIVTYDITNKKSFESLPQWLD--DTNRYTSKDVLIAIVGNKSDLSTNRKVDFHHAEALAE 140
Query: 92 SLHLHSFAVSARTGDNC 108
+ + SA+ DN
Sbjct: 141 KENTVALETSAKEADNV 157
>gi|154417548|ref|XP_001581794.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121916024|gb|EAY20808.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 194
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
KI +YD++S +SF S+ WV+ L + + +A+V NK D++ +RVV E+
Sbjct: 80 KIAFIVYDVSSAKSFESVMYWVE--ELRQNTGNDMIIAIVGNKCDLDSKRVVDFEKAENF 137
Query: 90 AQSLHLHSFAVSARTG 105
A+S++ SA++G
Sbjct: 138 AKSVNGVYIETSAKSG 153
>gi|432916105|ref|XP_004079294.1| PREDICTED: ras-related protein Rab-6B-like isoform 1 [Oryzias
latipes]
Length = 208
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+E +R +T+E + A
Sbjct: 88 VAVVVYDITNVNSFQQTCKWIDDVRTERGSDV--IIMLVGNKTDLEEKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 146 KELNVMFIETSAKTGSN 162
>gi|118347274|ref|XP_001007114.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila]
gi|89288881|gb|EAR86869.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila SB210]
gi|307777850|dbj|BAJ21321.1| Rab-family small GTPase RabX1C [Tetrahymena thermophila]
Length = 175
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
IV+ YDIT+ SF W ++ +KS+ +AL+ NK D+E QR V+ +LA
Sbjct: 84 IVMISYDITNRYSFDRAQLWFKDYN-QKKSNKLALIALIGNKCDLEQQRQVSYYEGKQLA 142
Query: 91 QSLHLHSFAVSARTG 105
SL + F VS++TG
Sbjct: 143 NSLGMLFFEVSSKTG 157
>gi|383856774|ref|XP_003703882.1| PREDICTED: ras-related protein Rab-28-like [Megachile rotundata]
Length = 238
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 31 IVIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
I++ +YD+T+ SF + W+ + L+ +A+V NK D+EHQR V +R K
Sbjct: 88 IILLVYDVTNSFSFEVLEEWISKIRKLSSDYEEAPLMAVVGNKCDVEHQRSVKKDRTHKF 147
Query: 90 AQSLHLHSFAVSARTGD--NCWVNTRTPEINPLKYLQSNNEYN---FLSMVG--FEAGTF 142
A S VSARTG+ + + T +I ++ +++ EY+ ++ +G + T
Sbjct: 148 AAENGFPSHDVSARTGEAVSLCIVTLAAQILGVRLTKTDQEYHKPIIIAEIGDTVDMSTV 207
Query: 143 YMAVKRL 149
+ VKR+
Sbjct: 208 HKVVKRI 214
>gi|432916107|ref|XP_004079295.1| PREDICTED: ras-related protein Rab-6B-like isoform 2 [Oryzias
latipes]
Length = 217
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+E +R +T+E + A
Sbjct: 97 VAVVVYDITNVNSFQQTCKWIDDVRTERGSDV--IIMLVGNKTDLEEKRQITIEEGEQRA 154
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 155 KELNVMFIETSAKTGSN 171
>gi|184186083|ref|NP_001116967.1| rab3 GTPase [Strongylocentrotus purpuratus]
gi|60653473|gb|AAB67800.2| GTP-binding protein [Strongylocentrotus purpuratus]
Length = 219
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF+S+ W + S V LV NK DME +RV++ ++ +LA
Sbjct: 99 ILMYDVTNEESFNSVQDWCT--QIKTYSWDNAQVILVGNKCDMEDERVISTDKGKQLADQ 156
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 157 LGLEFFETSAK 167
>gi|291395402|ref|XP_002714096.1| PREDICTED: RAB3C, member RAS oncogene family-like [Oryctolagus
cuniculus]
Length = 219
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER +L +
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQRLGEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|260796185|ref|XP_002593085.1| hypothetical protein BRAFLDRAFT_210049 [Branchiostoma floridae]
gi|229278309|gb|EEN49096.1| hypothetical protein BRAFLDRAFT_210049 [Branchiostoma floridae]
Length = 196
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+LE + A
Sbjct: 74 VAVVVYDITNANSFHQTSKWIDDVRTERGSDV--IIMLVGNKTDLSDKRQVSLEDGERKA 131
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 132 KELNVMFIETSAKTGYN 148
>gi|393216771|gb|EJD02261.1| GTP binding protein [Fomitiporia mediterranea MF3/22]
Length = 215
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ QSF S W+D R + + LV NK D+ +R VTLE+ +LA
Sbjct: 94 VAIVVFDITNRQSFLSTRKWIDEVRSERGNDV--IIVLVGNKADLSDKREVTLEQAQELA 151
Query: 91 QSLHLHSFAVSARTGDN 107
L + SA+ G N
Sbjct: 152 DELKIMFMETSAKAGHN 168
>gi|301617603|ref|XP_002938225.1| PREDICTED: ras-related protein Rab-3C-like [Xenopus (Silurana)
tropicalis]
Length = 219
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER LA+
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISAERGKHLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|291235020|ref|XP_002737444.1| PREDICTED: Rab-protein 3-like isoform 1 [Saccoglossus kowalevskii]
gi|291235022|ref|XP_002737445.1| PREDICTED: Rab-protein 3-like isoform 2 [Saccoglossus kowalevskii]
Length = 219
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF ++ W + S V LV NK DME +RVV+++R +L+
Sbjct: 98 ILMYDVTNEESFQAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVVSVDRGKQLSDQ 155
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 156 LGLEFFETSAK 166
>gi|405964683|gb|EKC30136.1| Ras-related protein Rab-3 [Crassostrea gigas]
Length = 219
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF+++ W + S V LV NK D+E +RVV+ ER +LA
Sbjct: 98 ILMYDVTNEESFNAVMDWCT--QIKTYSWDNAQVVLVGNKCDLEDERVVSTERGKQLADQ 155
Query: 93 LHLHSFAVSAR 103
+ L F SA+
Sbjct: 156 IGLEFFETSAK 166
>gi|167393434|ref|XP_001740572.1| rab6 [Entamoeba dispar SAW760]
gi|165895264|gb|EDR22996.1| rab6, putative [Entamoeba dispar SAW760]
Length = 238
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ F +DIT SF SI W+ F N+ SS T + LV K D+E R +T + A
Sbjct: 80 VMCFCFDITKKASFSSISGWLREFQQNKNSSFNTKLILVGCKSDLEGNRQITTSEAEQFA 139
Query: 91 QSLHLHSFAVSART 104
Q + + SA+T
Sbjct: 140 QENKMSYYECSAKT 153
>gi|328714843|ref|XP_003245469.1| PREDICTED: ras-related protein Rab-28-like [Acyrthosiphon pisum]
Length = 223
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT SF ++ TW + + + PT+ AL +NK D+EH+R V+ E+ ++
Sbjct: 88 IILVYDITDCVSFSAVSTWYNKAISVQYENVPTF-ALFSNKCDLEHKRSVSEEKQILFSK 146
Query: 92 SLHLH-SFAVSARTGDN 107
+ S +VSARTG+N
Sbjct: 147 EFKIPISQSVSARTGEN 163
>gi|145501222|ref|XP_001436593.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403734|emb|CAK69196.1| unnamed protein product [Paramecium tetraurelia]
Length = 216
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + YD+ SF SI W+ L R + ++ VANK D+ ++RV++ E A LA
Sbjct: 89 VAVVCYDVEVKTSFASITRWISDVRLERGNDVIIFI--VANKIDVLNERVISTEEGANLA 146
Query: 91 QSLHLHSFAVSARTGDN 107
+ H VSA+TG+N
Sbjct: 147 KECDAHFIEVSAKTGNN 163
>gi|348568990|ref|XP_003470281.1| PREDICTED: ras-related protein Rab-3C-like [Cavia porcellus]
Length = 219
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER +L +
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQRLGEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|291227891|ref|XP_002733914.1| PREDICTED: RAB28, member RAS oncogene family-like [Saccoglossus
kowalevskii]
Length = 223
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
++ +YDI++ SF ++ W + + P +VALVANK D+EH + V E+H K
Sbjct: 89 ILLVYDISNYNSFENLEDWYAIVKKVFTDQEKLP-HVALVANKMDLEHMKTVKHEKHLKF 147
Query: 90 AQSLHLHSFAVSARTGDN 107
Q + S VSA+TGD+
Sbjct: 148 VQENGMSSHFVSAKTGDS 165
>gi|410924265|ref|XP_003975602.1| PREDICTED: ras-related protein Rab-6B-like isoform 1 [Takifugu
rubripes]
gi|225706442|gb|ACO09067.1| Ras-related protein Rab-6B [Osmerus mordax]
Length = 208
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+E +R +T+E + A
Sbjct: 88 VAVVVYDITNVNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLEEKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 146 KELNVMFIETSAKTGCN 162
>gi|156390336|ref|XP_001635227.1| predicted protein [Nematostella vectensis]
gi|156222318|gb|EDO43164.1| predicted protein [Nematostella vectensis]
Length = 225
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
++ +YD+T+ SF ++ W + ++ ++ALVANK D+EH RVV ++H +
Sbjct: 90 ILLVYDVTNQSSFDNLEDWYETAKKVAEKQGGKMPHMALVANKMDLEHMRVVKPDKHGRF 149
Query: 90 AQSLHLHSFAVSARTGDN 107
AQ L S +SA+T +
Sbjct: 150 AQENSLSSHFISAKTAEQ 167
>gi|291235024|ref|XP_002737446.1| PREDICTED: Rab-protein 3-like isoform 3 [Saccoglossus kowalevskii]
Length = 227
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF ++ W + S V LV NK DME +RVV+++R +L+
Sbjct: 106 ILMYDVTNEESFQAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVVSVDRGKQLSDQ 163
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 164 LGLEFFETSAK 174
>gi|47228262|emb|CAG07657.1| unnamed protein product [Tetraodon nigroviridis]
Length = 208
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+E +R +T+E + A
Sbjct: 88 VAVVVYDITNVNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLEEKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 146 KELNVMFIETSAKTGCN 162
>gi|84997125|ref|XP_953284.1| Rab GTPase [Theileria annulata strain Ankara]
gi|65304280|emb|CAI76659.1| Rab GTPase, putative [Theileria annulata]
Length = 208
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT SF I W L +N+ SS T L+ NK DME R V+L +L++
Sbjct: 90 IIMVYDITDKSSFEHINDW--LSEVNKYSSEDTCKLLLGNKCDMEDNRDVSLTDVQRLSE 147
Query: 92 SLHLHSFAVSARTGDN 107
+ + + VSA+TG N
Sbjct: 148 VIEVPAMDVSAKTGHN 163
>gi|198432465|ref|XP_002125663.1| PREDICTED: similar to RAB28, member RAS oncogene family [Ciona
intestinalis]
Length = 210
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 13 NYEIQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANK 72
N+ + L+V +G + G + Y I SF +I W+ S+ P Y LV NK
Sbjct: 60 NHNVTLQVCDVGGQNLGGSMFDKY-IYGANSFQNIEEWMSAVQSCDLSNKP-YFTLVGNK 117
Query: 73 GDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107
D+EHQR V ++H A ++ S +SA+TGD+
Sbjct: 118 VDLEHQRAVNKKKHESYAAENNMSSHFISAKTGDS 152
>gi|145552362|ref|XP_001461857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834352|emb|CAI44523.1| rab_B52 [Paramecium tetraurelia]
gi|124429693|emb|CAK94484.1| unnamed protein product [Paramecium tetraurelia]
Length = 208
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI Y + QSF ++ W+ N SS V L+ NK DM +R VTLE KL+Q
Sbjct: 89 VILTYSVIDRQSFQNVDGWLKSIQENTNSSDVQLV-LLGNKADMSAERKVTLEEGMKLSQ 147
Query: 92 SLHLHSFAVSARTGDNCWVNTRTPE-----INPLKYLQSNNE 128
++ F SA++ N +N E I L +Q+N+E
Sbjct: 148 QFNIPFFETSAKSNMN--INEAFQELSQRIIQTLSKMQANDE 187
>gi|410924267|ref|XP_003975603.1| PREDICTED: ras-related protein Rab-6B-like isoform 2 [Takifugu
rubripes]
Length = 219
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+E +R +T+E + A
Sbjct: 99 VAVVVYDITNVNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLEEKRQITIEEGEQRA 156
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 157 KELNVMFIETSAKTGCN 173
>gi|407040045|gb|EKE39952.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 209
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++FM+D+T+ +SF I W+ +F+ + T + LV NK DM +R V+ E A+
Sbjct: 81 ILFMFDVTNSESFTHIEDWMKVFYEIQNEDKKTLLVLVGNKNDMIAERQVSPEDAKDFAK 140
Query: 92 SLHLHSFAVSARTGDN 107
S +++ F SA+ N
Sbjct: 141 SHNINYFECSAKENIN 156
>gi|209737742|gb|ACI69740.1| Ras-related protein Rab-6B [Salmo salar]
Length = 212
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+E +R +T+E + A
Sbjct: 92 VAVVVYDITNMNSFQQTCKWIDDVRTERGSDV--IIMLVGNKTDLEEKRQITIEAGEQRA 149
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 150 KELNVMFIETSAKTGTN 166
>gi|440790218|gb|ELR11501.1| Ras subfamily protein [Acanthamoeba castellanii str. Neff]
Length = 237
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V +YD+T +SF +I W L++ +S LVANK D +RV++ E KLA
Sbjct: 105 VALVYDVTDAKSFQAISGWAQ--SLDQHASRQVCKVLVANKCDRADRRVISTEEGQKLAA 162
Query: 92 SLHLHSFAVSARTG 105
H F SA+TG
Sbjct: 163 DNGFHYFETSAKTG 176
>gi|61806504|ref|NP_001013485.1| ras-related protein Rab-6B [Danio rerio]
gi|60552244|gb|AAH91529.1| Zgc:112018 [Danio rerio]
Length = 208
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+E +R +T+E + A
Sbjct: 88 VAVVVYDITNINSFQLTSKWIDDVRTERGSDV--IIMLVGNKTDLEEKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 146 KELNVMFIETSAKTGSN 162
>gi|428179155|gb|EKX48027.1| hypothetical protein GUITHDRAFT_93719 [Guillardia theta CCMP2712]
Length = 214
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+ QSF +I W L ++ + +S P L+ NK D+ QR V+ E KLA+
Sbjct: 91 ILLVYDITNEQSFKNIEEW--LKNIEKHTSQPVNKILIGNKTDLGAQRKVSTEEGRKLAE 148
Query: 92 SLHLHSFAVSAR 103
L++ + SA+
Sbjct: 149 QLNMAFYETSAK 160
>gi|146184753|ref|XP_001030061.2| Ras family protein [Tetrahymena thermophila]
gi|146142676|gb|EAR82398.2| Ras family protein [Tetrahymena thermophila SB210]
gi|307777804|dbj|BAJ21298.1| Rab-family small GTPase Rab6D [Tetrahymena thermophila]
Length = 265
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 23 LGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT 82
L D +C IV +D+T+ +SF ++ W+ + NR S P LVANK D++ R V
Sbjct: 90 LRDATCAVIV---FDVTNKESFSNVDRWIKDYKDNRGSEAP--CVLVANKIDLKLTREVQ 144
Query: 83 LERHAKLAQSLHLHSFAVSARTGDN 107
L K A+ ++ + +SA+TG+N
Sbjct: 145 LADLEKKAKENNMKFYEISAKTGEN 169
>gi|126323469|ref|XP_001362786.1| PREDICTED: ras-related protein Rab-3A-like [Monodelphis domestica]
Length = 220
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA+
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAEH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|348500494|ref|XP_003437808.1| PREDICTED: ras-related protein Rab-3A-like [Oreochromis niloticus]
Length = 219
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV ER +L++
Sbjct: 98 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVAAERGRQLSEQ 155
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 156 LGFEFFEASAK 166
>gi|147901693|ref|NP_001088531.1| RAB3A, member RAS oncogene family [Xenopus laevis]
gi|54311426|gb|AAH84880.1| Rab3a-prov protein [Xenopus laevis]
Length = 220
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA+
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAEH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|149428156|ref|XP_001511148.1| PREDICTED: ras-related protein Rab-3A, partial [Ornithorhynchus
anatinus]
Length = 223
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA+
Sbjct: 102 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAEH 159
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 160 LGFEFFEASAK 170
>gi|62858351|ref|NP_001016426.1| RAB3A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89273837|emb|CAJ83688.1| RAB3A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89273838|emb|CAJ83689.1| RAB3A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|134024095|gb|AAI35627.1| RAB3A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 220
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA+
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAEH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|348501270|ref|XP_003438193.1| PREDICTED: ras-related protein Rab-6B-like isoform 1 [Oreochromis
niloticus]
Length = 208
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+E +R +T+E + A
Sbjct: 88 VAVVVYDITNVNSFQQTCKWIDDVRTERGSDV--IIMLVGNKTDLEEKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 146 KELNVMFIETSAKTGCN 162
>gi|116196288|ref|XP_001223956.1| hypothetical protein CHGG_04742 [Chaetomium globosum CBS 148.51]
gi|88180655|gb|EAQ88123.1| hypothetical protein CHGG_04742 [Chaetomium globosum CBS 148.51]
Length = 206
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + ++ L+ NK D E +RVV+ ER +LA
Sbjct: 87 ILLVYDVTDERSFNNIRTW--FANVEQHATEGVNKILIGNKCDWEEKRVVSTERGQQLAD 144
Query: 92 SLHLHSFAVSARTGDN 107
L++ VSA+T +N
Sbjct: 145 ELNIPFLEVSAKTNNN 160
>gi|91076370|ref|XP_967715.1| PREDICTED: similar to Ras-related protein Rab-27A (Rab-27)
(GTP-binding protein Ram) (Ram p25) [Tribolium
castaneum]
gi|270002552|gb|EEZ98999.1| hypothetical protein TcasGA2_TC004860 [Tribolium castaneum]
Length = 210
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF I WV+ L+ P V L NK D+E +R++T R ++A+
Sbjct: 87 LLLFDLTNEQSFLEIRNWVEQLRLHAYCDCPD-VVLCGNKADLEDRRIITEWRAREMAEK 145
Query: 93 LHLHSFAVSARTGDN 107
L L SA TG N
Sbjct: 146 LGLVYLETSAATGQN 160
>gi|221111768|ref|XP_002162570.1| PREDICTED: ras-related protein Rab-3C-like [Hydra magnipapillata]
Length = 213
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF ++ W + S T V LV NK DM+ +R VT E+ KL++
Sbjct: 95 ILMYDVTNEESFKAVADWAG--QVKTYSWDNTQVVLVGNKCDMDEERAVTYEQGKKLSEQ 152
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 153 LGFPFFETSAK 163
>gi|326925412|ref|XP_003208909.1| PREDICTED: ras-related protein Rab-3B-like [Meleagris gallopavo]
Length = 219
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDITS SF+++ W + S V LV NK DME +R+V LE+ LA
Sbjct: 99 ILMYDITSEDSFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEDERIVPLEKGKHLADQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDYFEASAK 167
>gi|302692114|ref|XP_003035736.1| hypothetical protein SCHCODRAFT_81164 [Schizophyllum commune H4-8]
gi|300109432|gb|EFJ00834.1| hypothetical protein SCHCODRAFT_81164 [Schizophyllum commune H4-8]
Length = 210
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ QSF S W+D R + LV NK D+ +R VTLE A
Sbjct: 91 VAIVVFDITNRQSFLSTSKWIDDVRSER--GNDVIIVLVGNKADLSDKRQVTLEEATAKA 148
Query: 91 QSLHLHSFAVSARTGDN 107
Q L++ SA+ G N
Sbjct: 149 QQLNIMFMETSAKAGHN 165
>gi|145484709|ref|XP_001428364.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833834|emb|CAI39372.1| rab_A10 [Paramecium tetraurelia]
gi|124395449|emb|CAK60966.1| unnamed protein product [Paramecium tetraurelia]
Length = 206
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT QSF I W L + + +S LV NK D+E +R VT E +LA
Sbjct: 86 IILTYDITDKQSFKDIENW--LAEVEKHASENVVRLLVGNKADLESKRQVTYEEGKELAD 143
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 144 SLGIKFIEASAKANTN 159
>gi|145477777|ref|XP_001424911.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833757|emb|CAI39348.1| rab_B10 [Paramecium tetraurelia]
gi|124391978|emb|CAK57513.1| unnamed protein product [Paramecium tetraurelia]
Length = 206
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT QSF I W L + + +S LV NK D+E +R VT E +LA
Sbjct: 86 IILTYDITDKQSFKDIENW--LAEVEKHASENVVRLLVGNKADLESKRQVTYEEGKELAD 143
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 144 SLGIKFIEASAKANTN 159
>gi|391348759|ref|XP_003748610.1| PREDICTED: ras-related protein Rab-6A-like [Metaseiulus
occidentalis]
Length = 207
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R T + LV NK D+ +R V+ E K A
Sbjct: 87 VAVVVYDITNANSFHQTSKWIDDVRTER--GTDVIIMLVGNKTDLSEKRQVSTEDGEKKA 144
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA++G N
Sbjct: 145 KELQVMFIETSAKSGYN 161
>gi|4930237|pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 82 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 139
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 140 LGFEFFEASAK 150
>gi|224466272|gb|ACN44178.1| RAS oncogene family protein [Cavia porcellus]
Length = 168
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 76 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 133
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 134 LGFEFFEASAK 144
>gi|221111766|ref|XP_002161131.1| PREDICTED: ras-related protein Rab-3B-like [Hydra magnipapillata]
Length = 218
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ +SF ++ W + S T V LV NK DM+ +R VT E+ KL++
Sbjct: 99 ILMYDVTNEESFKAVADWAG--QVKTYSWDNTQVVLVGNKCDMDEERAVTYEQGKKLSEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFPFFETSAK 167
>gi|1045640|gb|AAC52704.1| rab3c, partial [Rattus norvegicus]
Length = 195
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V L NK DME +RVV+ ER +L +
Sbjct: 84 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQ 141
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 142 LGFEFFETSAK 152
>gi|407041845|gb|EKE40984.1| Rab family GTPase, partial [Entamoeba nuttalli P19]
Length = 153
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ F +DIT SF SI W+ F N+ S T + LV K D+E R +T + A
Sbjct: 80 VMCFCFDITKKASFSSISGWLREFQQNQNPSFSTKLILVGCKSDLEGNRQITTTEAEQFA 139
Query: 91 QSLHLHSFAVSART 104
Q + F SA+T
Sbjct: 140 QENKMSYFECSAKT 153
>gi|340371509|ref|XP_003384288.1| PREDICTED: ras-related protein Rab-28-like [Amphimedon
queenslandica]
Length = 228
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWV-DLFHLNRKSSTPT-YVALVANKGDMEHQRVVTLERHAKL 89
V+ +YDIT+ SF ++ W+ + + S P Y+ LVANK D+EHQR V E+H +
Sbjct: 87 VLLIYDITNYSSFDNLEEWLKETKKVFANSDRPLPYMMLVANKIDLEHQRTVKREKHLEF 146
Query: 90 AQSLHLHSFAVSARTGD 106
A++ + S ++SA+ D
Sbjct: 147 AKAHRITSHSLSAKNDD 163
>gi|149059323|gb|EDM10330.1| RAB3C, member RAS oncogene family, isoform CRA_b [Rattus
norvegicus]
Length = 225
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V L NK DME +RVV+ ER +L +
Sbjct: 105 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQ 162
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 163 LGFEFFETSAK 173
>gi|118094547|ref|XP_422470.2| PREDICTED: ras-related protein Rab-3C [Gallus gallus]
Length = 219
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDITS SF+++ W + S V LV NK DME +R++ LE+ LA
Sbjct: 99 ILMYDITSEDSFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEDERIIPLEKGKHLADQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDYFEASAK 167
>gi|426228772|ref|XP_004008470.1| PREDICTED: ras-related protein Rab-3A [Ovis aries]
Length = 220
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|403345307|gb|EJY72016.1| Rab GTPase 2b [Oxytricha trifallax]
gi|403361525|gb|EJY80461.1| Rab GTPase 2b [Oxytricha trifallax]
Length = 221
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ F YDIT +SF+S+ W + + +S + L+ NK D+E QR V++ER + +
Sbjct: 93 IFFSYDITRQESFNSLNHWYE--EVLAQSEPDIIMFLIGNKKDLESQREVSIERAEQFRR 150
Query: 92 SLHLH-SFAVSARTGDN 107
+H F SARTG+N
Sbjct: 151 EKGIHFFFETSARTGEN 167
>gi|441628727|ref|XP_003275954.2| PREDICTED: ras-related protein Rab-3A, partial [Nomascus
leucogenys]
Length = 186
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|194373731|dbj|BAG56961.1| unnamed protein product [Homo sapiens]
Length = 292
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|290990744|ref|XP_002677996.1| rab family small GTPase [Naegleria gruberi]
gi|284091606|gb|EFC45252.1| rab family small GTPase [Naegleria gruberi]
Length = 290
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLF-------HLNRKSSTPT---YVALVANKGDMEHQRVV 81
VI YDIT+ +SF ++ W+ + RKSS + + + ANK D+ H+R V
Sbjct: 144 VILTYDITNLESFKNLEEWLKYVKHIFSDSYEGRKSSEKSKDPVICIFANKCDLSHERKV 203
Query: 82 TLERHAKLAQSLHLHSFAVSARTGD 106
E H + A L SF VSA+TGD
Sbjct: 204 KRETHDEWAGYHKLSSFFVSAKTGD 228
>gi|148686490|gb|EDL18437.1| RAB3C, member RAS oncogene family, isoform CRA_c [Mus musculus]
Length = 225
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V L NK DME +RVV+ ER +L +
Sbjct: 105 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQ 162
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 163 LGFEFFETSAK 173
>gi|392567066|gb|EIW60241.1| ras-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 214
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ QSF S W+D R + + LV NK D+ +R VTLE A
Sbjct: 93 VAIVVFDITNRQSFLSTSKWIDDVRSERGNDV--IIVLVGNKADLSDKRQVTLEEANAKA 150
Query: 91 QSLHLHSFAVSARTGDN 107
Q L++ SA+ G N
Sbjct: 151 QELNIMFMETSAKAGHN 167
>gi|327262966|ref|XP_003216293.1| PREDICTED: ras-related protein Rab-3C-like [Anolis carolinensis]
Length = 219
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ +R LA+
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEEERVISTDRGKHLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|225717542|gb|ACO14617.1| Ras-related protein Rab-3 [Caligus clemensi]
Length = 359
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF+ + W + S V LV NK DME +RV++ ER +LA S
Sbjct: 240 ILMYDVTNEDSFNHVHDWCT--QIKTYSWDNAQVILVGNKCDMEDERVISFERGKQLADS 297
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 298 LGLEFFETSAK 308
>gi|395513171|ref|XP_003760803.1| PREDICTED: ras-related protein Rab-3A [Sarcophilus harrisii]
Length = 359
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA+
Sbjct: 238 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAEH 295
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 296 LGFEFFEASAK 306
>gi|383100637|emb|CCF17540.1| RabE GTPase protein [Micrasterias denticulata]
Length = 206
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDITS SF+SI W+ ++ +S LV NK DME +RVV+ E+ LA
Sbjct: 88 IVLVYDITSESSFNSIRGWIR--NIEEHASENVCKILVGNKADMEDRRVVSKEQGQALAN 145
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+ N
Sbjct: 146 EFRIKFFETSAKADIN 161
>gi|312072742|ref|XP_003139204.1| Ras family protein [Loa loa]
gi|307765636|gb|EFO24870.1| Ras family protein [Loa loa]
Length = 219
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YD+T +SF ++ + L + + + + L+ NK D+EH+R V ER +LA
Sbjct: 82 VMCVYDLTDERSFDNLRNYW-LKEIRVHAPSNAVLMLIGNKADLEHKRTVNFERAERLAN 140
Query: 92 SLHLHSFAVSARTGDNC 108
L + + VSA+TG NC
Sbjct: 141 QLGVSLYEVSAKTGINC 157
>gi|444726632|gb|ELW67156.1| Ras-related protein Rab-3A [Tupaia chinensis]
Length = 208
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|54696260|gb|AAV38502.1| RAB3A, member RAS oncogene family [synthetic construct]
gi|61368754|gb|AAX43231.1| RAB3A member RAS oncogene family [synthetic construct]
Length = 221
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|145515201|ref|XP_001443500.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834479|emb|CAI44558.1| rab_A52 [Paramecium tetraurelia]
gi|124410889|emb|CAK76103.1| unnamed protein product [Paramecium tetraurelia]
Length = 208
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI Y + QSF ++ W+ N SS V LV NK DM +R VTLE K++Q
Sbjct: 89 VILTYSVIDRQSFQNVDGWLRSIQENTNSSDVQLV-LVGNKADMSAERQVTLEEGKKMSQ 147
Query: 92 SLHLHSFAVSARTGDN---CWVNTRTPEINPLKYLQSNNEYNFLSM 134
++ F SA++ N + N I L +Q+N E L++
Sbjct: 148 QYNIPFFETSAKSNMNINEAFNNLAFRIIQTLSKMQTNEEKQNLNL 193
>gi|260816606|ref|XP_002603179.1| hypothetical protein BRAFLDRAFT_281741 [Branchiostoma floridae]
gi|229288496|gb|EEN59190.1| hypothetical protein BRAFLDRAFT_281741 [Branchiostoma floridae]
Length = 222
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+TS QSF +I W+ ++ P V L NK D+E QRV++ E+ ++A+
Sbjct: 98 LLLFDLTSEQSFVNIRNWMSQLQMHAYCENPD-VVLCGNKADLEDQRVISEEKAREVAEK 156
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 157 YGMPYFETSAATGMN 171
>gi|145535548|ref|XP_001453507.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833747|emb|CAI39343.1| rab_B22 [Paramecium tetraurelia]
gi|124421229|emb|CAK86110.1| unnamed protein product [Paramecium tetraurelia]
Length = 205
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T QSF + W L + + ++ LV NK D+E +R VT E +LA
Sbjct: 86 IILVYDVTDKQSFKDVENW--LAEVEKYANENVVRVLVGNKVDLESKREVTFEEGKELAD 143
Query: 92 SLHLHSFAVSARTGDN 107
SL++ SA+ N
Sbjct: 144 SLNIRFIETSAKNSSN 159
>gi|268560172|ref|XP_002646149.1| C. briggsae CBR-AEX-6 protein [Caenorhabditis briggsae]
Length = 215
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++DIT+ QSF +I W+ ++ P + + NKGD+E++R V+ R +LA
Sbjct: 93 ILIFDITNEQSFLNIRDWLSQLKVHAYCEQPDII-ICGNKGDLENRRQVSTARAKQLADQ 151
Query: 93 LHLHSFAVSARTGDN 107
L L F SA TG N
Sbjct: 152 LGLPYFETSACTGVN 166
>gi|148233560|ref|NP_001086132.1| RAB6B, member RAS oncogene family [Xenopus laevis]
gi|49257610|gb|AAH74238.1| MGC83971 protein [Xenopus laevis]
Length = 208
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFHQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 146 KDLNVMYIETSAKTGYN 162
>gi|57008|emb|CAA30005.1| unnamed protein product [Rattus norvegicus]
Length = 220
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|7689363|gb|AAF67748.1| GTP-binding protein RAB3A [Homo sapiens]
Length = 220
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|4506367|ref|NP_002857.1| ras-related protein Rab-3A [Homo sapiens]
gi|383873155|ref|NP_001244696.1| ras-related protein Rab-3A [Macaca mulatta]
gi|114676111|ref|XP_512511.2| PREDICTED: ras-related protein Rab-3A isoform 3 [Pan troglodytes]
gi|296233287|ref|XP_002761948.1| PREDICTED: ras-related protein Rab-3A [Callithrix jacchus]
gi|397493887|ref|XP_003817827.1| PREDICTED: ras-related protein Rab-3A isoform 1 [Pan paniscus]
gi|397493889|ref|XP_003817828.1| PREDICTED: ras-related protein Rab-3A isoform 2 [Pan paniscus]
gi|402904778|ref|XP_003915217.1| PREDICTED: ras-related protein Rab-3A [Papio anubis]
gi|403303431|ref|XP_003942330.1| PREDICTED: ras-related protein Rab-3A [Saimiri boliviensis
boliviensis]
gi|410053467|ref|XP_003953458.1| PREDICTED: ras-related protein Rab-3A [Pan troglodytes]
gi|426387780|ref|XP_004060340.1| PREDICTED: ras-related protein Rab-3A [Gorilla gorilla gorilla]
gi|131801|sp|P20336.1|RAB3A_HUMAN RecName: Full=Ras-related protein Rab-3A
gi|75075791|sp|Q4R4R9.1|RAB3A_MACFA RecName: Full=Ras-related protein Rab-3A
gi|7684383|gb|AAF67385.1|AC068499_1 RAB3A, member RAS oncogene family [Homo sapiens]
gi|20379038|gb|AAM21079.1|AF498931_1 small GTP binding protein RAB3A [Homo sapiens]
gi|550064|gb|AAA60242.1| GTP-binding protein [Homo sapiens]
gi|5678931|gb|AAD46811.1| GTP-binding protein [Homo sapiens]
gi|15079994|gb|AAH11782.1| RAB3A, member RAS oncogene family [Homo sapiens]
gi|67971128|dbj|BAE01906.1| unnamed protein product [Macaca fascicularis]
gi|119605078|gb|EAW84672.1| RAB3A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119605079|gb|EAW84673.1| RAB3A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119605080|gb|EAW84674.1| RAB3A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|158260141|dbj|BAF82248.1| unnamed protein product [Homo sapiens]
gi|190689931|gb|ACE86740.1| RAB3A, member RAS oncogene family protein [synthetic construct]
gi|190691303|gb|ACE87426.1| RAB3A, member RAS oncogene family protein [synthetic construct]
gi|208967240|dbj|BAG73634.1| RAB3A, member RAS oncogene family [synthetic construct]
gi|351701226|gb|EHB04145.1| Ras-related protein Rab-3A [Heterocephalus glaber]
gi|355703320|gb|EHH29811.1| Ras-related protein Rab-3A [Macaca mulatta]
gi|355763570|gb|EHH62193.1| Ras-related protein Rab-3A [Macaca fascicularis]
gi|380783409|gb|AFE63580.1| ras-related protein Rab-3A [Macaca mulatta]
gi|383413957|gb|AFH30192.1| ras-related protein Rab-3A [Macaca mulatta]
gi|384944492|gb|AFI35851.1| ras-related protein Rab-3A [Macaca mulatta]
gi|410216084|gb|JAA05261.1| RAB3A, member RAS oncogene family [Pan troglodytes]
gi|410250372|gb|JAA13153.1| RAB3A, member RAS oncogene family [Pan troglodytes]
gi|410295286|gb|JAA26243.1| RAB3A, member RAS oncogene family [Pan troglodytes]
gi|410337961|gb|JAA37927.1| RAB3A, member RAS oncogene family [Pan troglodytes]
Length = 220
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|213401875|ref|XP_002171710.1| GTP-binding protein SAS1 [Schizosaccharomyces japonicus yFS275]
gi|211999757|gb|EEB05417.1| GTP-binding protein SAS1 [Schizosaccharomyces japonicus yFS275]
Length = 200
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF +I TW ++ + +S + L+ NK D E QR VT E+ LA+
Sbjct: 85 ILLLYDVTDEKSFENIRTWFS--NVEQHASENVFKILIGNKCDCEEQRQVTYEQGQALAE 142
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+T N
Sbjct: 143 ELGIKFLEASAKTNVN 158
>gi|123448163|ref|XP_001312814.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121894675|gb|EAX99884.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 199
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
+ + +Y +T +SF S+ W++ N + + L+ANK D E RVV+ E+ +
Sbjct: 81 QTALIVYSVTDAESFESVDGWLNSLRENAEPDITLF--LLANKCDCEGDRVVSAEQGQEK 138
Query: 90 AQSLHLHSFAVSARTG 105
A+S+ H + VSA+TG
Sbjct: 139 AKSMGAHFYEVSAKTG 154
>gi|291235598|ref|XP_002737729.1| PREDICTED: Rab-protein 6-like [Saccoglossus kowalevskii]
Length = 210
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+++ + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIDEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 146 KELNVMHIETSAKTGYN 162
>gi|55846766|gb|AAV67387.1| ras-associated protein rab3A [Macaca fascicularis]
Length = 194
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 75 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 132
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 133 LGFEFFEASAK 143
>gi|50305705|ref|XP_452813.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641946|emb|CAH01664.1| KLLA0C13728p [Kluyveromyces lactis]
Length = 208
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM---EHQRVVTLER 85
+ + +YD+T QSF WV H ++S +ALV NK D+ E R V E
Sbjct: 80 AQAALVVYDVTKPQSFIKARHWVKELH--EQASKGIVIALVGNKMDLLESEEDRKVAKEE 137
Query: 86 HAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSNNEYNFLSMVGFEAGTFYMA 145
KL+Q +L F SA+TGDN VN I L+ ++ N + G E G +
Sbjct: 138 AEKLSQEENLLFFETSAKTGDN--VNEVFLAIGEKIPLKKSDGSNTDGLRGTEDGRIDLN 195
Query: 146 VKRLTTGP 153
T+ P
Sbjct: 196 KPDDTSNP 203
>gi|110350677|ref|NP_776871.2| ras-related protein Rab-3A [Bos taurus]
gi|116242742|sp|P11023.3|RAB3A_BOVIN RecName: Full=Ras-related protein Rab-3A; AltName: Full=SMG P25A
gi|109658293|gb|AAI18279.1| RAB3A, member RAS oncogene family [Bos taurus]
gi|296486045|tpg|DAA28158.1| TPA: ras-related protein Rab-3A [Bos taurus]
Length = 220
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|6679593|ref|NP_033027.1| ras-related protein Rab-3A [Mus musculus]
gi|61098195|ref|NP_037150.2| ras-related protein Rab-3A [Rattus norvegicus]
gi|178056554|ref|NP_001116651.1| ras-related protein Rab-3A [Sus scrofa]
gi|187936991|ref|NP_001120756.1| ras-related protein Rab-3A [Ovis aries]
gi|261862303|ref|NP_001159871.1| ras-related protein Rab-3A [Mus musculus]
gi|73986147|ref|XP_541942.2| PREDICTED: ras-related protein Rab-3A [Canis lupus familiaris]
gi|149757273|ref|XP_001503278.1| PREDICTED: ras-related protein Rab-3A-like [Equus caballus]
gi|301753909|ref|XP_002912772.1| PREDICTED: ras-related protein Rab-3A-like [Ailuropoda melanoleuca]
gi|344282612|ref|XP_003413067.1| PREDICTED: ras-related protein Rab-3A-like [Loxodonta africana]
gi|354473979|ref|XP_003499209.1| PREDICTED: ras-related protein Rab-3A-like [Cricetulus griseus]
gi|395847913|ref|XP_003796608.1| PREDICTED: ras-related protein Rab-3A [Otolemur garnettii]
gi|410950864|ref|XP_003982122.1| PREDICTED: ras-related protein Rab-3A [Felis catus]
gi|51702793|sp|P63012.1|RAB3A_RAT RecName: Full=Ras-related protein Rab-3A
gi|51702798|sp|P63011.1|RAB3A_MOUSE RecName: Full=Ras-related protein Rab-3A
gi|122064948|sp|Q06AU3.1|RAB3A_PIG RecName: Full=Ras-related protein Rab-3A
gi|2342528|emb|CAA51470.1| low molecular weight GTP-binding protein [Mus musculus]
gi|12837856|dbj|BAB23976.1| unnamed protein product [Mus musculus]
gi|31566349|gb|AAH53519.1| Rab3a protein [Mus musculus]
gi|56270582|gb|AAH87580.1| RAB3A, member RAS oncogene family [Rattus norvegicus]
gi|74177523|dbj|BAE34630.1| unnamed protein product [Mus musculus]
gi|74187365|dbj|BAE36661.1| unnamed protein product [Mus musculus]
gi|112292943|dbj|BAF02849.1| Rab3A [Mus musculus]
gi|115394766|gb|ABI97177.1| Rab-3A [Sus scrofa]
gi|148696919|gb|EDL28866.1| RAB3A, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|148696920|gb|EDL28867.1| RAB3A, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|149036066|gb|EDL90732.1| RAB3A, member RAS oncogene family [Rattus norvegicus]
gi|186886450|gb|ACC93601.1| Rab3A [Ovis aries]
gi|281343531|gb|EFB19115.1| hypothetical protein PANDA_000545 [Ailuropoda melanoleuca]
gi|344241347|gb|EGV97450.1| Ras-related protein Rab-3A [Cricetulus griseus]
Length = 220
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|440896449|gb|ELR48367.1| Ras-related protein Rab-3A, partial [Bos grunniens mutus]
Length = 221
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 100 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 157
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 158 LGFEFFEASAK 168
>gi|71034167|ref|XP_766725.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353682|gb|EAN34442.1| GTP-binding protein rab11, putative [Theileria parva]
gi|110825814|gb|ABH00983.1| small GTP-binding protein [Theileria parva]
Length = 212
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDI S QSF+++ W L LN +ALV NK D+ H R VT E + A+
Sbjct: 87 AIVVYDIASKQSFYNVSRW--LSELNEYGDANMIIALVGNKSDLTHLREVTYEDGERYAK 144
Query: 92 SLHLHSFAVSARTGDN 107
S +L F S + +N
Sbjct: 145 SNNLIFFETSCLSNEN 160
>gi|348558673|ref|XP_003465141.1| PREDICTED: ras-related protein Rab-3A [Cavia porcellus]
Length = 220
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|145514760|ref|XP_001443285.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834275|emb|CAI44502.1| rab_C33 [Paramecium tetraurelia]
gi|124410663|emb|CAK75888.1| unnamed protein product [Paramecium tetraurelia]
Length = 208
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ ++DIT+ SFH++ W + +N ++++ + LV NK D+E QR++T LA
Sbjct: 83 VLLVFDITNPDSFHNVQKWYN--DVNEQAASNCTIVLVGNKTDLESQRMITTNEGKALAD 140
Query: 92 SLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSN-----NEYNFLSMVGFEAGTFYMAV 146
+ SA+T N + T L + + NE + G + GTFY
Sbjct: 141 QYKMQYIETSAKTNQNIDLLFETTAQQILDKIDKHLIDFANEDS-----GIKLGTFYKQA 195
Query: 147 KR 148
K+
Sbjct: 196 KQ 197
>gi|13470090|ref|NP_076341.1| ras-related protein Rab-3C [Mus musculus]
gi|51338595|sp|P62824.1|RAB3C_RAT RecName: Full=Ras-related protein Rab-3C
gi|51338605|sp|P62823.1|RAB3C_MOUSE RecName: Full=Ras-related protein Rab-3C
gi|12597437|gb|AAG60047.1|AF312037_1 small GTP binding protein Rab3C [Mus musculus]
gi|1304207|dbj|BAA11302.1| rab3C [Rattus norvegicus]
gi|12851806|dbj|BAB29172.1| unnamed protein product [Mus musculus]
gi|13027787|gb|AAK08980.1| small GTP-binding protein Rab3C [Mus musculus]
gi|13094065|emb|CAC32042.1| Rab3C [Mus musculus]
gi|26348082|dbj|BAC37689.1| unnamed protein product [Mus musculus]
gi|74216593|dbj|BAE37733.1| unnamed protein product [Mus musculus]
gi|74223648|dbj|BAE28694.1| unnamed protein product [Mus musculus]
gi|89130661|gb|AAI14336.1| RAB3C, member RAS oncogene family [Mus musculus]
gi|112292947|dbj|BAF02851.1| Rab3C [Mus musculus]
gi|148686488|gb|EDL18435.1| RAB3C, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|149059322|gb|EDM10329.1| RAB3C, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
Length = 227
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V L NK DME +RVV+ ER +L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|406604644|emb|CCH43902.1| Ras-related protein [Wickerhamomyces ciferrii]
Length = 203
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T ++F ++ W H + ++ T + LV NK D + R V+ ER LAQ
Sbjct: 89 IILVYDVTDERTFENVRNWFQTVH--QHANEDTQLILVGNKNDEKDLRAVSSERGESLAQ 146
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+T DN
Sbjct: 147 ELGIPFLEASAKTNDN 162
>gi|145529337|ref|XP_001450457.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831341|emb|CAI39286.1| rab_B75 [Paramecium tetraurelia]
gi|124418068|emb|CAK83060.1| unnamed protein product [Paramecium tetraurelia]
Length = 215
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + YD+ QSF S+ W++ L R + + LVANK D+E+ RV++ E+ A LA
Sbjct: 89 VAVVCYDVEVKQSFESVVKWIEDVRLERGNDVIIF--LVANKIDLEN-RVISTEQGATLA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ H VSA+ G N
Sbjct: 146 KEQDAHFIEVSAKLGSN 162
>gi|348579296|ref|XP_003475416.1| PREDICTED: ras-related protein Rab-13-like [Cavia porcellus]
Length = 203
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I TW+ N +S L+ NK DME +R V ER KLA+
Sbjct: 84 IILVYDITDEKSFENIQTWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKERADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSTN 157
>gi|304606|gb|AAC37384.1| RabC [Dictyostelium discoideum]
gi|739978|prf||2004272E rabC gene
Length = 196
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI +YD+T +SF + WV+ +N+ + + LV NK DM QR VT E+ ++A+
Sbjct: 84 VIVVYDVTDPKSFERLKNWVE--DINQYTQDGMIIILVGNKSDMVAQRKVTFEQGQEMAE 141
Query: 92 SLHLHSFAVSAR 103
L VSA+
Sbjct: 142 QLKTKFLEVSAK 153
>gi|407037098|gb|EKE38485.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 202
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I ++D+T ++F + W+D + + + TY+ LV NK D++ RVVT + AQ
Sbjct: 86 IIIVFDVTDKKTFDQVQYWMD--EIKKNTQVYTYIVLVGNKSDLDSSRVVTTTEAQEKAQ 143
Query: 92 SLHLHSFAVSARTGDN 107
S + + SA G N
Sbjct: 144 SYKIPYYETSATLGTN 159
>gi|393908357|gb|EJD75027.1| Ras family protein, variant [Loa loa]
Length = 155
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YD+T +SF ++ + L + + + + L+ NK D+EH+R V ER +LA
Sbjct: 18 VMCVYDLTDERSFDNLRNYW-LKEIRVHAPSNAVLMLIGNKADLEHKRTVNFERAERLAN 76
Query: 92 SLHLHSFAVSARTGDNC 108
L + + VSA+TG NC
Sbjct: 77 QLGVSLYEVSAKTGINC 93
>gi|242005911|ref|XP_002423803.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
gi|212507019|gb|EEB11065.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
Length = 209
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E K A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSSEEGVKKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVKFIETSAKAGYN 162
>gi|402582915|gb|EJW76860.1| Rab3 protein [Wuchereria bancrofti]
Length = 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV+ ER +LA
Sbjct: 100 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDDERVVSCERGKQLADQ 157
Query: 93 LHLHSFAVSA 102
L + V A
Sbjct: 158 LAKENINVKA 167
>gi|67473021|ref|XP_652298.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56469126|gb|EAL46912.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790090|dbj|BAD82841.1| small GTPase EhRabK1 [Entamoeba histolytica]
gi|449706379|gb|EMD46238.1| small GTPase EhRabK1, putative [Entamoeba histolytica KU27]
Length = 212
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++F YDIT ++ + W+ F + ++ T L+ K D+E QR +T E + A
Sbjct: 81 ILFTYDITKRETLEHVEDWMKEFCQVQPDTSKTLTILIGCKNDLEEQRQITFEEGERFAS 140
Query: 92 SLHLHSFAVSARTGDN 107
+ + F SA+T +N
Sbjct: 141 THQIPFFECSAKTNNN 156
>gi|390334969|ref|XP_789482.3| PREDICTED: ras-related protein Rab-27A-like [Strongylocentrotus
purpuratus]
Length = 231
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF +I W+ ++ P V L NK D++ QR V+ ER ++A+
Sbjct: 104 LLLFDLTNEQSFINIRNWMTQLQMHAYCENPD-VVLCGNKSDLDDQRAVSDERAKEMAEK 162
Query: 93 LHLHSFAVSARTGDN 107
L F SA++G+N
Sbjct: 163 YGLPYFETSAKSGNN 177
>gi|145484322|ref|XP_001428171.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834551|emb|CAI44580.1| rab_A05 [Paramecium tetraurelia]
gi|124395255|emb|CAK60773.1| unnamed protein product [Paramecium tetraurelia]
Length = 211
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YD+T +SF+S+ TW++ N + + LV NK D+E R VT E +LA+
Sbjct: 82 ALIVYDVTKRESFNSVQTWIEEARQN--GNQTMSMILVGNKTDLESMREVTTEEGKQLAK 139
Query: 92 SLHLHSFAVSARTGD 106
++ SA+TGD
Sbjct: 140 QQNILFIETSAKTGD 154
>gi|407044554|gb|EKE42669.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 212
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++F YDIT ++ + W+ F + ++ T L+ K D+E QR +T E + A
Sbjct: 81 ILFTYDITKRETLEHVEDWMKEFCQVQPDTSKTLTILIGCKNDLEEQRQITFEEGERFAS 140
Query: 92 SLHLHSFAVSARTGDN 107
+ + F SA+T +N
Sbjct: 141 THQIPFFECSAKTNNN 156
>gi|126315213|ref|XP_001366023.1| PREDICTED: ras-related protein Rab-3C-like [Monodelphis domestica]
Length = 219
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGKHLGEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|390459930|ref|XP_002806670.2| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-3C-like
[Callithrix jacchus]
Length = 225
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 105 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 162
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 163 LGFEFFETSAK 173
>gi|167537652|ref|XP_001750494.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771034|gb|EDQ84708.1| predicted protein [Monosiga brevicollis MX1]
Length = 204
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+ +SF +I TW+ ++ + +S+ ++ NK DME +RVV+ E+ KLA
Sbjct: 84 IMLVYDITAEKSFDNIKTWIR--NIEQNASSDVERMILGNKCDMEDKRVVSTEQGEKLAA 141
Query: 92 SLHLHSFAVSART 104
+ F SA++
Sbjct: 142 EYGVPFFETSAKS 154
>gi|449270352|gb|EMC81037.1| Ras-related protein Rab-3C [Columba livia]
Length = 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV+ ER LA+
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVIFTERGKHLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|167379291|ref|XP_001735081.1| GTP-binding protein ypt2 [Entamoeba dispar SAW760]
gi|165903121|gb|EDR28774.1| GTP-binding protein ypt2, putative [Entamoeba dispar SAW760]
Length = 212
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++F YDIT ++ + W+ F + ++ T L+ K D+E QR +T E + A
Sbjct: 81 ILFTYDITKRETLEHVEDWMKEFCQVQPDTSKTLTILIGCKNDLEEQRQITFEEGERFAS 140
Query: 92 SLHLHSFAVSARTGDN 107
+ + F SA+T +N
Sbjct: 141 THQIPFFECSAKTNNN 156
>gi|345793828|ref|XP_851045.2| PREDICTED: ras-related protein Rab-3C [Canis lupus familiaris]
Length = 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|350594328|ref|XP_003359827.2| PREDICTED: ras-related protein Rab-3C-like isoform 1 [Sus scrofa]
Length = 225
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 105 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 162
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 163 LGFEFFETSAK 173
>gi|449268202|gb|EMC79072.1| Ras-related protein Rab-3B [Columba livia]
Length = 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDITS SF+++ W + S V LV NK DME +R+V +E+ LA
Sbjct: 99 ILMYDITSEDSFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEDERIVPVEKGKHLADQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDYFEASAK 167
>gi|291231120|ref|XP_002735513.1| PREDICTED: RAB27A, member RAS oncogene family-like [Saccoglossus
kowalevskii]
Length = 223
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++D+TS QSF +I W+ ++ P V L NK D+E QRVV+ ++ +LA
Sbjct: 99 ILLFDLTSEQSFVNIRNWIAQLQMHAYCENPDIV-LCGNKTDLEDQRVVSEDKARELAGK 157
Query: 93 LHLHSFAVSARTGDN 107
L F SA +G N
Sbjct: 158 YGLPYFETSAASGSN 172
>gi|344272308|ref|XP_003407975.1| PREDICTED: ras-related protein Rab-3C-like [Loxodonta africana]
Length = 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|296475820|tpg|DAA17935.1| TPA: ras-related protein Rab-3C [Bos taurus]
Length = 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|417408831|gb|JAA50951.1| Putative rab subfamily protein of small gtpase, partial [Desmodus
rotundus]
Length = 228
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFEASAK 175
>gi|431918473|gb|ELK17694.1| Ras-related protein Rab-3C [Pteropus alecto]
Length = 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|344278706|ref|XP_003411134.1| PREDICTED: ras-related protein Rab-3B-like [Loxodonta africana]
Length = 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGKILAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|146180701|ref|XP_001021320.2| Ras family protein [Tetrahymena thermophila]
gi|146144411|gb|EAS01075.2| Ras family protein [Tetrahymena thermophila SB210]
gi|307777750|dbj|BAJ21271.1| Rab-family small GTPase Rab1A [Tetrahymena thermophila]
Length = 211
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT Q+F I W L ++ ++ LV NK D+E +R VT E +LA
Sbjct: 86 IILVYDITDKQTFKDIDNW--LAEADKNANENVIKLLVGNKADLESKRQVTFEEGKELAD 143
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA +N
Sbjct: 144 SLGIKFIETSALNSNN 159
>gi|397626807|gb|EJK68249.1| hypothetical protein THAOC_10589 [Thalassiosira oceanica]
Length = 231
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R ++ LV NK D+E +RVVT E+ + A
Sbjct: 113 IIVVYDVTDNESFNNVKQW--LHEIDRYAAENVNKLLVGNKCDLEGKRVVTTEQGKEFAD 170
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+T N
Sbjct: 171 GLGIEFLETSAKTSTN 186
>gi|340506147|gb|EGR32356.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 248
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 23 LGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT 82
L D +C I ++D+T+ +SF++I W+ + NR + L+ NK DM+ R ++
Sbjct: 91 LRDATCA---IIVFDVTNKESFNNIERWLKDYRDNRGNDAS--CVLIGNKIDMKQIREIS 145
Query: 83 LERHAKLAQSLHLHSFAVSARTGDN 107
++ + + L++ F +SA+TG+N
Sbjct: 146 QQQAEEKGKMLNMLYFDISAKTGEN 170
>gi|91086487|ref|XP_970606.1| PREDICTED: similar to rab 19, 41 and [Tribolium castaneum]
gi|270009806|gb|EFA06254.1| hypothetical protein TcasGA2_TC009113 [Tribolium castaneum]
Length = 221
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI +YDIT SF S+ WV+ + R S + +ALV NK DME R V E + Q
Sbjct: 97 VIIVYDITKRSSFLSVARWVE--EVRRYSGSSVLLALVGNKADMESLREVEFEEAEAMCQ 154
Query: 92 SLHLHSFAVSARTGDN 107
+ F + A DN
Sbjct: 155 YMPEVLFVLEASAKDN 170
>gi|449703887|gb|EMD44244.1| Rab family gtpase [Entamoeba histolytica KU27]
Length = 196
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+++ QSF ++ W+D + K + L NK D++ +RV+T E A+
Sbjct: 79 VIMFDVSNRQSFENVSNWIDACN---KIEEKRVLVLAGNKTDLD-ERVITKEEGEARAKE 134
Query: 93 LHLHSFAVSART--GDNCWVNTRTPEIN--PLKYLQSNNE 128
L F VSA+T G N T T EI P Q+NNE
Sbjct: 135 FGLKYFEVSAKTGVGINEMFETLTKEIVALPKAEAQNNNE 174
>gi|19424194|ref|NP_598220.1| ras-related protein Rab-3C [Rattus norvegicus]
gi|1373214|gb|AAC52879.1| GTP-binding protein [Rattus norvegicus]
Length = 227
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVVSTERGRHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|426384624|ref|XP_004058859.1| PREDICTED: ras-related protein Rab-3C [Gorilla gorilla gorilla]
Length = 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|307107707|gb|EFN55949.1| hypothetical protein CHLNCDRAFT_48772 [Chlorella variabilis]
Length = 222
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YD+T SF SIP W L L +S+ V LV NK D+ QR V++++ +LAQ
Sbjct: 90 ALLVYDVTRASSFESIPRW--LNELREHASSDMVVMLVGNKTDLVDQRDVSMQQGQELAQ 147
Query: 92 SLHLHSFAVSARTGDN 107
L SA G N
Sbjct: 148 REGLLFIETSALDGSN 163
>gi|67483164|ref|XP_656866.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56474092|gb|EAL51480.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790152|dbj|BAD82872.1| small GTPase EhRabX24 [Entamoeba histolytica]
gi|449709734|gb|EMD48941.1| small GTPase EhRabX24, putative [Entamoeba histolytica KU27]
Length = 202
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I ++D+T ++F + W+D + + + TY+ LV NK D++ RVVT + AQ
Sbjct: 86 IIIVFDVTDRKTFDQVQYWMD--EIKKNTQVYTYIVLVGNKSDLDSNRVVTTTEAQEKAQ 143
Query: 92 SLHLHSFAVSARTGDN 107
S + + SA G N
Sbjct: 144 SYKIPYYETSATLGTN 159
>gi|363744183|ref|XP_003642996.1| PREDICTED: ras-related protein Rab-3C [Gallus gallus]
Length = 227
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV+ ER LA+
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVIFTERGKHLAEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|196006527|ref|XP_002113130.1| hypothetical protein TRIADDRAFT_24915 [Trichoplax adhaerens]
gi|190585171|gb|EDV25240.1| hypothetical protein TRIADDRAFT_24915, partial [Trichoplax
adhaerens]
Length = 127
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 22 LLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV 81
+L C I +YDIT+ S ++ W+ L++ + P V L+ NK D+E +R++
Sbjct: 30 ILNISVCKYAAIVVYDITNMDSLYTAMDWIK--ALDKVKTPPINVKLIGNKADLESRRMI 87
Query: 82 TLERHAKLAQSLHLHSFAVSARTGDNC 108
LE+ K + + SARTG N
Sbjct: 88 NLEKVQKYSHENKIDLMETSARTGLNV 114
>gi|449279549|gb|EMC87121.1| Ras-related protein Rab-3A, partial [Columba livia]
Length = 214
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ E+ +LA+
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSEKGRQLAEH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|355762181|gb|EHH61901.1| hypothetical protein EGM_20025, partial [Macaca fascicularis]
Length = 143
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 23 ILMYDITNEESFNAVQDWA--TQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 80
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 81 LGFDFFEASAK 91
>gi|311259329|ref|XP_003128025.1| PREDICTED: ras-related protein Rab-3B-like [Sus scrofa]
Length = 219
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|395510325|ref|XP_003759428.1| PREDICTED: ras-related protein Rab-3C [Sarcophilus harrisii]
Length = 227
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGKHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|219126122|ref|XP_002183313.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405069|gb|EEC45013.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 203
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R ++ LV NK D+ +RVV+ E+ + A
Sbjct: 84 IIVVYDVTDAESFNNVKQW--LHEIDRYAAENVNKLLVGNKSDLTAKRVVSTEQGKEFAD 141
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+T N
Sbjct: 142 SLGIEFLETSAKTSSN 157
>gi|397647267|gb|EJK77625.1| hypothetical protein THAOC_00528 [Thalassiosira oceanica]
Length = 172
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 9 LHNDNYEIQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVAL 68
L N+N + + + + +I +YD TS SF + W L +NR +S T L
Sbjct: 26 LENENSQERFRTITSAYYRGADGIIMVYDTTSSDSFDHVNDW--LKEVNRYASESTSKLL 83
Query: 69 VANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107
+ NK D R V+ ER + A L + SA++G N
Sbjct: 84 IGNKADRVADRAVSTERAKEFADDLGVAFLETSAKSGSN 122
>gi|256066501|ref|XP_002570541.1| rab15 13 10 1 35 5 and [Schistosoma mansoni]
gi|350645538|emb|CCD59778.1| rab15, 13, 10, 1, 35, 5, and, putative [Schistosoma mansoni]
Length = 211
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T+ S+H+I TW++ ++ ++ L+ NK D+E QRVV E KLAQ
Sbjct: 90 IMLVYDVTNLDSYHNITTWMN--NITEHTNEGVAKMLLGNKCDLEAQRVVKYENGFKLAQ 147
Query: 92 SLHLHSFAVSARTGDN 107
S + SA+ G N
Sbjct: 148 SYGISFIETSAKGGIN 163
>gi|145475115|ref|XP_001423580.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390641|emb|CAK56182.1| unnamed protein product [Paramecium tetraurelia]
Length = 216
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT---LERHAK 88
I +YDIT+ SF +I W+ N KS V +V NK D++ QRV++ ER K
Sbjct: 89 AIIVYDITNQDSFDAIDDWIKDARENGKSDLD--VMVVGNKIDLKDQRVISKDHAEREMK 146
Query: 89 LAQSLHLHSFAVSARTGDNCWVN 111
+L++ + AV+ D C+ N
Sbjct: 147 NKDALYIETSAVTGENIDKCFQN 169
>gi|407409243|gb|EKF32227.1| small GTP-binding protein RAB6, putative [Trypanosoma cruzi
marinkellei]
Length = 283
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
S G IV+ YDITS SF W+D R S + LV NK D + +RVV+ E
Sbjct: 114 SSGTIVV--YDITSRASFLGTFKWIDEVRAERGDSVVIF--LVGNKSDAQEKRVVSTEEA 169
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
K A+ +L VSA+ G N
Sbjct: 170 QKKAEEYNLVFMEVSAKQGKN 190
>gi|118347154|ref|XP_001007054.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila]
gi|89288821|gb|EAR86809.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila SB210]
gi|307777856|dbj|BAJ21324.1| Rab-family small GTPase RabX1G [Tetrahymena thermophila]
Length = 174
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I+I +YDITS SF I + + + +K + + +ALV NK D+ R V+ + LA
Sbjct: 81 ILIMIYDITSRDSFTHIQYYYEDY--VKKCNIKSIIALVGNKKDLNEFRQVSFQEGQDLA 138
Query: 91 QSLHLHSFAVSARTGD 106
+SL + F VSA TGD
Sbjct: 139 KSLGVDFFEVSAFTGD 154
>gi|291398900|ref|XP_002715144.1| PREDICTED: RAB3B, member RAS oncogene family-like [Oryctolagus
cuniculus]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|156390340|ref|XP_001635229.1| predicted protein [Nematostella vectensis]
gi|156222320|gb|EDO43166.1| predicted protein [Nematostella vectensis]
Length = 225
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
++ +YD+T+ SF ++ W + ++ ++ALV NK D+EH RVV ++H +
Sbjct: 90 ILLVYDVTNQSSFDNLEDWYETAKKVAEKQGGKMPHMALVXNKMDLEHMRVVKPDKHGRF 149
Query: 90 AQSLHLHSFAVSARTGDN 107
AQ L S +SA+T +
Sbjct: 150 AQENSLSSHFISAKTAEQ 167
>gi|123484457|ref|XP_001324271.1| Ras family protein [Trichomonas vaginalis G3]
gi|62736266|gb|AAX97462.1| small Rab GTPase RabA6 [Trichomonas vaginalis]
gi|121907151|gb|EAY12048.1| Ras family protein [Trichomonas vaginalis G3]
Length = 206
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT+ SF + TW++ L + Y+ LV NKGD+E QR V +++ A+
Sbjct: 84 AILVYDITNETSFEELSTWLN--DLQALCNPNAYILLVGNKGDLESQRQVGVQQAKDFAE 141
Query: 92 SLHLHSFAVSARTGDN 107
L SA +G N
Sbjct: 142 QHKLEYIETSALSGQN 157
>gi|114052949|ref|NP_001040071.1| ras-related protein Rab-3C [Bos taurus]
gi|149732720|ref|XP_001495120.1| PREDICTED: ras-related protein Rab-3C-like [Equus caballus]
gi|426246459|ref|XP_004017011.1| PREDICTED: ras-related protein Rab-3C [Ovis aries]
gi|108935883|sp|P10949.3|RAB3C_BOVIN RecName: Full=Ras-related protein Rab-3C; AltName: Full=SMG P25C
gi|86438380|gb|AAI12796.1| RAB3C, member RAS oncogene family [Bos taurus]
gi|296475826|tpg|DAA17941.1| TPA: RAB3C, member RAS oncogene family [Bos taurus]
Length = 227
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|330801036|ref|XP_003288537.1| Rab GTPase [Dictyostelium purpureum]
gi|325081440|gb|EGC34956.1| Rab GTPase [Dictyostelium purpureum]
Length = 197
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI +YD+T +SF WV+ +N+ + + LV NK D+ QR VT E+ ++A+
Sbjct: 85 VIVVYDVTDPKSFERCKNWVE--DINQNTQDGMIIILVGNKSDLASQRKVTFEQGQQMAE 142
Query: 92 SLHLHSFAVSAR 103
L VSA+
Sbjct: 143 QLKTKFLEVSAK 154
>gi|301765878|ref|XP_002918360.1| PREDICTED: ras-related protein Rab-3C-like [Ailuropoda melanoleuca]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGRHLGEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFETSAK 167
>gi|167386978|ref|XP_001737975.1| small GTPase rabd [Entamoeba dispar SAW760]
gi|165899005|gb|EDR25714.1| small GTPase rabd, putative [Entamoeba dispar SAW760]
Length = 194
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+++ QSF +I W+D + K + L NK D+ +RV+T E A+
Sbjct: 77 VIMFDVSNRQSFENISNWIDACN---KIEEKRVLVLAGNKVDL-SERVITKEEGEARAKE 132
Query: 93 LHLHSFAVSARTGD--NCWVNTRTPEINPLKYL--QSNNE 128
L F VSA+TG N T T EI L + Q+NNE
Sbjct: 133 FGLKYFEVSAKTGAGINEMFETLTKEIVTLPKVEAQNNNE 172
>gi|410948619|ref|XP_003981028.1| PREDICTED: ras-related protein Rab-3C [Felis catus]
Length = 227
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|350594330|ref|XP_003483878.1| PREDICTED: ras-related protein Rab-3C-like isoform 2 [Sus scrofa]
Length = 227
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|146181225|ref|XP_001022351.2| Ras family protein [Tetrahymena thermophila]
gi|146144246|gb|EAS02106.2| Ras family protein [Tetrahymena thermophila SB210]
gi|307777818|dbj|BAJ21305.1| Rab-family small GTPase Rab2F [Tetrahymena thermophila]
Length = 235
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
+ G +V+F DIT SF ++P W L + + T+V +V NK D QR V+ +
Sbjct: 80 AIGAVVVF--DITKRSSFDNLPKW--LHDIKEQGKEETFVLIVGNKFDQMLQREVSQQEA 135
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
++ A+ + VSA++GDN
Sbjct: 136 SEFAEQQGFNYVEVSAKSGDN 156
>gi|19923750|ref|NP_002858.2| ras-related protein Rab-3B [Homo sapiens]
gi|38258903|sp|P20337.2|RAB3B_HUMAN RecName: Full=Ras-related protein Rab-3B
gi|20379040|gb|AAM21080.1|AF498932_1 small GTP binding protein RAB3B [Homo sapiens]
gi|13477155|gb|AAH05035.1| RAB3B, member RAS oncogene family [Homo sapiens]
gi|119627207|gb|EAX06802.1| RAB3B, member RAS oncogene family [Homo sapiens]
gi|312152638|gb|ADQ32831.1| RAB3B, member RAS oncogene family [synthetic construct]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|441649668|ref|XP_004090970.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-44
[Nomascus leucogenys]
Length = 976
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDITS +SF + W+D L S + L+ NK D E +R V++E +LAQ
Sbjct: 864 VVLMYDITSQESFTHVRYWLDC--LQDAGSDGVVIVLLGNKMDCEEERQVSVEAGQQLAQ 921
Query: 92 SLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSNNE 128
L ++ SA G N P +N + L+ E
Sbjct: 922 ELGVYFGECSAALGH----NVLEPVVNLARSLRMQEE 954
>gi|66827165|ref|XP_646937.1| Rab GTPase [Dictyostelium discoideum AX4]
gi|74897455|sp|Q55ET3.1|RABQ_DICDI RecName: Full=Ras-related protein RabQ
gi|60475033|gb|EAL72969.1| Rab GTPase [Dictyostelium discoideum AX4]
Length = 204
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + YDIT QSF + W+D + + SS +AL+ NK D + +RV+T E AK A
Sbjct: 80 IALLCYDITKRQSFQYLSGWMD--EVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNA 137
Query: 91 QSLHLHSFAVSAR 103
+ + F SA+
Sbjct: 138 KENDILFFETSAK 150
>gi|351697769|gb|EHB00688.1| Ras-related protein Rab-3B [Heterocephalus glaber]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|148227273|ref|NP_001090835.1| RAB6B, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|110645498|gb|AAI18790.1| rab6b protein [Xenopus (Silurana) tropicalis]
Length = 208
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFHQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEAGEQKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 146 KELNVMFIETSAKTGYN 162
>gi|403267520|ref|XP_003925875.1| PREDICTED: ras-related protein Rab-3C [Saimiri boliviensis
boliviensis]
Length = 227
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|395818775|ref|XP_003782792.1| PREDICTED: ras-related protein Rab-3C [Otolemur garnettii]
Length = 227
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|340718724|ref|XP_003397813.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Bombus
terrestris]
gi|350409814|ref|XP_003488852.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Bombus
impatiens]
Length = 211
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLGDKRQVSMEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|197945426|gb|ACH80191.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945428|gb|ACH80192.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945430|gb|ACH80193.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945432|gb|ACH80194.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945434|gb|ACH80195.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945436|gb|ACH80196.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945438|gb|ACH80197.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945440|gb|ACH80198.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945442|gb|ACH80199.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945444|gb|ACH80200.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945446|gb|ACH80201.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945454|gb|ACH80205.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945456|gb|ACH80206.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945482|gb|ACH80219.1| GTP-binding protein RAB2-like protein [Paramecium tetraurelia]
gi|197945504|gb|ACH80230.1| GTP-binding protein RAB2-like protein [Paramecium septaurelia]
gi|197945522|gb|ACH80239.1| GTP-binding protein RAB2-like protein [Paramecium novaurelia]
gi|197945526|gb|ACH80241.1| GTP-binding protein RAB2-like protein [Paramecium decaurelia]
Length = 107
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
S G I++F D+T+ QSF + W + + + + +V NK D+E +R V E
Sbjct: 1 SIGGILVF--DVTNRQSFEDVQKWYN--EIQGYACDKIEMVIVGNKIDLEERREVKTEEA 56
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
K AQ F SA+TG+N
Sbjct: 57 KKFAQKFGFDYFETSAKTGEN 77
>gi|320590560|gb|EFX03003.1| rab GTPase [Grosmannia clavigera kw1407]
Length = 205
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + ++ L+ NK D E +RV++ ER +LA
Sbjct: 86 ILLVYDVTDERSFNNIRTW--FSNVEQHATEGVNKILIGNKCDWEEKRVISTERGQQLAD 143
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++G N
Sbjct: 144 ELGIPFLEVSAKSGIN 159
>gi|118347282|ref|XP_001007118.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila]
gi|89288885|gb|EAR86873.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila SB210]
gi|307777848|dbj|BAJ21320.1| Rab-family small GTPase RabX1B [Tetrahymena thermophila]
Length = 175
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
IV+ YDIT+ SF W ++ +K + +AL+ NK D+E QR V+ + +A
Sbjct: 84 IVMISYDITNRYSFDRAQLWCKDYN-QKKLNKVALLALIGNKCDLEQQRQVSYQEGKHIA 142
Query: 91 QSLHLHSFAVSARTG 105
+SL + F VS++TG
Sbjct: 143 KSLGMLFFEVSSKTG 157
>gi|403258075|ref|XP_003921608.1| PREDICTED: ras-related protein Rab-3B isoform 1 [Saimiri
boliviensis boliviensis]
gi|403258077|ref|XP_003921609.1| PREDICTED: ras-related protein Rab-3B isoform 2 [Saimiri
boliviensis boliviensis]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|242003701|ref|XP_002422827.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
gi|212505697|gb|EEB10089.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
Length = 213
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF I W+D + P V L NK D+E +RV++ ER +AQ
Sbjct: 87 LLLFDLTNEQSFLEIRNWLDQLRTHAYCDQPD-VVLCGNKCDLEEKRVISEERAKDVAQQ 145
Query: 93 LHLHSFAVSARTGDN 107
L SA TG N
Sbjct: 146 HGLEYLETSAATGHN 160
>gi|440294791|gb|ELP87736.1| GTP-binding protein YPT1, putative [Entamoeba invadens IP1]
Length = 200
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+FM+D+TS ++ + W+ F+ +TPT + L+ K D+ +RVVT ++ + A+
Sbjct: 77 VLFMFDLTSSETLSHVEDWLKTFYEINNENTPTLLVLIGTKCDLVAERVVTEDQAKEFAK 136
Query: 92 SLHLHSFAVSARTGDN 107
+ + F S+R N
Sbjct: 137 THSIPYFECSSRLNIN 152
>gi|19923985|ref|NP_612462.1| ras-related protein Rab-3C [Homo sapiens]
gi|388452650|ref|NP_001252924.1| ras-related protein Rab-3C [Macaca mulatta]
gi|297675313|ref|XP_002815628.1| PREDICTED: ras-related protein Rab-3C isoform 2 [Pongo abelii]
gi|332233625|ref|XP_003266004.1| PREDICTED: ras-related protein Rab-3C [Nomascus leucogenys]
gi|332821437|ref|XP_526915.3| PREDICTED: ras-related protein Rab-3C isoform 2 [Pan troglodytes]
gi|402871610|ref|XP_003899749.1| PREDICTED: ras-related protein Rab-3C [Papio anubis]
gi|23396832|sp|Q96E17.1|RAB3C_HUMAN RecName: Full=Ras-related protein Rab-3C
gi|15278255|gb|AAH13033.1| RAB3C, member RAS oncogene family [Homo sapiens]
gi|19067861|gb|AAK08968.1| Rab3c [Homo sapiens]
gi|119575373|gb|EAW54978.1| RAB3C, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|355691328|gb|EHH26513.1| Ras-related protein Rab-3C [Macaca mulatta]
gi|355749935|gb|EHH54273.1| Ras-related protein Rab-3C [Macaca fascicularis]
gi|380809404|gb|AFE76577.1| ras-related protein Rab-3C [Macaca mulatta]
Length = 227
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|145488520|ref|XP_001430264.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833736|emb|CAI39339.1| rab_B32 [Paramecium tetraurelia]
gi|124397360|emb|CAK62866.1| unnamed protein product [Paramecium tetraurelia]
Length = 216
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ YD+++ QSF I W+D R S L+ANK D++ RVVT + KLAQ
Sbjct: 89 AVLCYDVSNAQSFADIKAWLDYVREERGSD--VVGVLIANKIDIKD-RVVTTQEGEKLAQ 145
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA+ G N
Sbjct: 146 EQDLLYYEVSAKEGTN 161
>gi|123502092|ref|XP_001328221.1| GTP-binding protein YPTM1 [Trichomonas vaginalis G3]
gi|121911161|gb|EAY15998.1| GTP-binding protein YPTM1, putative [Trichomonas vaginalis G3]
Length = 199
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDI+ +SF +IP WV + S+ +Y L+ NK D+E R V + A +A+
Sbjct: 84 IIIVYDISDRESFDAIPQWVK--DVQSLSNPESYKILIGNKSDLESARAVKKDEAANVAE 141
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 142 SLGMPFMETSAKFNSN 157
>gi|397514337|ref|XP_003827446.1| PREDICTED: ras-related protein Rab-3C [Pan paniscus]
Length = 227
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|348554601|ref|XP_003463114.1| PREDICTED: ras-related protein Rab-3B-like [Cavia porcellus]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|344235947|gb|EGV92050.1| Ras-related protein Rab-3C [Cricetulus griseus]
Length = 220
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +R+++ ER L +
Sbjct: 100 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERIISTERGQHLGEQ 157
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 158 LGFEFFETSAK 168
>gi|224043682|ref|XP_002187756.1| PREDICTED: ras-related protein Rab-30 [Taeniopygia guttata]
gi|363729400|ref|XP_417213.3| PREDICTED: ras-related protein Rab-30 [Gallus gallus]
gi|449271458|gb|EMC81819.1| Ras-related protein Rab-30 [Columba livia]
Length = 203
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R A+ ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLADKREVSQQRAAEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>gi|196049930|pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 100 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 157
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 158 LGFDFFEASAK 168
>gi|84997692|ref|XP_953567.1| small GTPase (Rab11 ) [Theileria annulata]
gi|65304564|emb|CAI72889.1| small GTPase (Rab11 homologue), putative [Theileria annulata]
Length = 207
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDI S QSF+++ W L LN +ALV NK D+ H R VT E + A+
Sbjct: 86 AIVVYDIASKQSFYNVSRW--LSELNEYGDPNMIIALVGNKSDLTHLREVTFEDGERYAR 143
Query: 92 SLHLHSFAVSARTGDN 107
S +L F S +N
Sbjct: 144 SNNLLFFETSCLNNEN 159
>gi|326914544|ref|XP_003203585.1| PREDICTED: ras-related protein Rab-30-like [Meleagris gallopavo]
Length = 203
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R A+ ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLADKREVSQQRAAEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>gi|48096836|ref|XP_392533.1| PREDICTED: ras-related protein Rab-6A [Apis mellifera]
gi|380012436|ref|XP_003690289.1| PREDICTED: ras-related protein Rab-6A-like [Apis florea]
Length = 209
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLGDKRQVSMEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|27806113|ref|NP_776872.1| ras-related protein Rab-3B [Bos taurus]
gi|129324|sp|P10948.1|RAB3B_BOVIN RecName: Full=Ras-related protein Rab-3B; AltName: Full=SMG P25B
gi|162762|gb|AAA30417.1| GTP-binding protein [Bos taurus]
gi|113912049|gb|AAI22724.1| RAB3B, member RAS oncogene family [Bos taurus]
gi|296489056|tpg|DAA31169.1| TPA: ras-related protein Rab-3B [Bos taurus]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|340718722|ref|XP_003397812.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Bombus
terrestris]
gi|350409818|ref|XP_003488853.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Bombus
impatiens]
Length = 209
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLGDKRQVSMEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|550066|gb|AAA60243.1| GTP-binding protein [Homo sapiens]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|256071246|ref|XP_002571952.1| rab-2414 [Schistosoma mansoni]
gi|238657101|emb|CAZ28182.1| rab-2,4,14, putative [Schistosoma mansoni]
Length = 225
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT +F+ I TW L R +S T + L+ NK D+E QR VT E +LA
Sbjct: 88 ALLVYDITRKPTFNRIQTW--LTDARRLTSPNTVIFLIGNKADLEEQRDVTYEEAKQLAD 145
Query: 92 SLHLHSFAVSARTGDN 107
L SA++G N
Sbjct: 146 ENGLLFLECSAKSGAN 161
>gi|296207942|ref|XP_002750863.1| PREDICTED: ras-related protein Rab-3B [Callithrix jacchus]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|338721709|ref|XP_001493964.2| PREDICTED: ras-related protein Rab-3B-like [Equus caballus]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|241723781|ref|XP_002404303.1| RAS-related protein, putative [Ixodes scapularis]
gi|215505389|gb|EEC14883.1| RAS-related protein, putative [Ixodes scapularis]
gi|346471859|gb|AEO35774.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R + + LV NK D+ +R VT E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGND--VIIMLVGNKTDLSDKRQVTTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA++G N
Sbjct: 146 KELNVMFIETSAKSGYN 162
>gi|432853436|ref|XP_004067706.1| PREDICTED: ras-related protein Rab-3B-like [Oryzias latipes]
Length = 217
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V +V NK DME +R+V LE+ LA
Sbjct: 98 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVIMVGNKCDMEEERIVPLEKGKHLADQ 155
Query: 93 LHLHSFAVSAR 103
L + SA+
Sbjct: 156 LGFEYYEASAK 166
>gi|388452940|ref|NP_001253721.1| ras-related protein Rab-3B [Macaca mulatta]
gi|114556592|ref|XP_001143400.1| PREDICTED: ras-related protein Rab-3B [Pan troglodytes]
gi|332219762|ref|XP_003259028.1| PREDICTED: ras-related protein Rab-3B [Nomascus leucogenys]
gi|397518878|ref|XP_003829603.1| PREDICTED: ras-related protein Rab-3B [Pan paniscus]
gi|426329634|ref|XP_004025842.1| PREDICTED: ras-related protein Rab-3B [Gorilla gorilla gorilla]
gi|387542674|gb|AFJ71964.1| ras-related protein Rab-3B [Macaca mulatta]
gi|410207396|gb|JAA00917.1| RAB3B, member RAS oncogene family [Pan troglodytes]
gi|410251308|gb|JAA13621.1| RAB3B, member RAS oncogene family [Pan troglodytes]
gi|410298026|gb|JAA27613.1| RAB3B, member RAS oncogene family [Pan troglodytes]
gi|410329635|gb|JAA33764.1| RAB3B, member RAS oncogene family [Pan troglodytes]
gi|410329637|gb|JAA33765.1| RAB3B, member RAS oncogene family [Pan troglodytes]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|410967277|ref|XP_003990147.1| PREDICTED: ras-related protein Rab-3B [Felis catus]
Length = 219
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|340509261|gb|EGR34812.1| Rab8-family small gtpase, putative [Ichthyophthirius multifiliis]
Length = 205
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 2 LEVKMLNLHNDNYEIQLKV----------VLLGDPSCGKIVIFM-YDITSGQSFHSIPTW 50
++ KM + DN +I+L+V + + G + I M Y I +SF+++ W
Sbjct: 49 IDFKMKKIEIDNKKIKLQVWDTAGQERFRTITQNYYKGAMGIIMTYAINDKESFNNVELW 108
Query: 51 VDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107
+ + ++ + LV NK DME +R VTL+ LA S + F SA+T +N
Sbjct: 109 --MKQIREQADSNVQKILVGNKSDMESERQVTLQEGKALADSFGIKFFETSAKTNEN 163
>gi|66824201|ref|XP_645455.1| Rab GTPase [Dictyostelium discoideum AX4]
gi|166208509|sp|P34143.2|RABC_DICDI RecName: Full=Ras-related protein RabC
gi|60473617|gb|EAL71558.1| Rab GTPase [Dictyostelium discoideum AX4]
Length = 196
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI +YD+T +SF WV+ +N+ + + LV NK DM QR VT E+ ++A+
Sbjct: 84 VIVVYDVTDPKSFERCKNWVE--DINQYTQDGMIIILVGNKSDMVAQRKVTFEQGQEMAE 141
Query: 92 SLHLHSFAVSAR 103
L VSA+
Sbjct: 142 QLKTKFLEVSAK 153
>gi|13537433|dbj|BAB40671.1| small GTPase RabD1 [Entamoeba histolytica]
Length = 196
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+++ QSF ++ W+D + K + L NK D++ +RV+T E A+
Sbjct: 79 VIMFDVSNRQSFENVSNWIDGCN---KIEEKRVLVLAGNKTDLD-ERVITKEEGEARAKE 134
Query: 93 LHLHSFAVSART--GDNCWVNTRTPEIN--PLKYLQSNNE 128
L F VSA+T G N T T EI P Q+NNE
Sbjct: 135 FGLKYFEVSAKTGVGINEMFETLTKEIVALPKAEAQNNNE 174
>gi|443734188|gb|ELU18260.1| hypothetical protein CAPTEDRAFT_218978 [Capitella teleta]
Length = 228
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++D+T+ QSF +I W+ + P V L NK D+E QRV+T R +A+
Sbjct: 108 ILVFDLTNEQSFLNICNWLAQLQTHAYCDNPDIV-LCGNKADIEDQRVITDARAKDMAEK 166
Query: 93 LHLHSFAVSARTGDN 107
L F SA TG N
Sbjct: 167 YSLPYFETSAATGQN 181
>gi|114052691|ref|NP_001040270.1| ras small monomeric GTPase Rab6 [Bombyx mori]
gi|87248577|gb|ABD36341.1| ras small monomeric GTPase Rab6 [Bombyx mori]
Length = 209
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E K A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGDKKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|19115492|ref|NP_594580.1| GTPase Ypt2 [Schizosaccharomyces pombe 972h-]
gi|141305|sp|P17609.1|YPT2_SCHPO RecName: Full=GTP-binding protein ypt2; AltName: Full=SEC4 homolog
gi|5144|emb|CAA36707.1| unnamed protein product [Schizosaccharomyces pombe]
gi|5150|emb|CAA37045.1| unnamed protein product [Schizosaccharomyces pombe]
gi|2414662|emb|CAB16405.1| GTPase Ypt2 [Schizosaccharomyces pombe]
Length = 200
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF ++ TW ++ + +S Y L+ NK D E QR V+ E+ LA
Sbjct: 85 ILLLYDVTDKKSFDNVRTWFS--NVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALAD 142
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+T N
Sbjct: 143 ELGVKFLEASAKTNVN 158
>gi|115752504|ref|XP_001178826.1| PREDICTED: ras-related protein Rab-33B-like [Strongylocentrotus
purpuratus]
Length = 236
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTP-TYVALVANKGDMEHQRVVTLERHAKLA 90
VIF+YD+T +F S+PTW+D +R S +P T LV NK DM ++VVT K +
Sbjct: 100 VIFVYDVTKMSTFESLPTWID--ECDRHSLSPDTPRVLVGNKCDMADRKVVTSGIAQKFS 157
Query: 91 QSLHLHSFAVSAR 103
+ ++ F +A+
Sbjct: 158 DANNMPFFETAAK 170
>gi|145508820|ref|XP_001440354.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833819|emb|CAI39368.1| rab_A22 [Paramecium tetraurelia]
gi|124407571|emb|CAK72957.1| unnamed protein product [Paramecium tetraurelia]
Length = 205
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T QSF + W L + + ++ LV NK D+E +R VT E +LA
Sbjct: 86 IILVYDVTDKQSFKDVENW--LAEVEKYANENVVRVLVGNKVDLESKREVTSEEGKELAD 143
Query: 92 SLHLHSFAVSARTGDN 107
SL++ SA+ N
Sbjct: 144 SLNIRFIETSAKNSSN 159
>gi|297664935|ref|XP_002810871.1| PREDICTED: ras-related protein Rab-3B [Pongo abelii]
Length = 219
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|114673236|ref|XP_001134973.1| PREDICTED: ras-related protein Rab-27B isoform 1 [Pan troglodytes]
gi|397513977|ref|XP_003827281.1| PREDICTED: ras-related protein Rab-27B [Pan paniscus]
gi|410207842|gb|JAA01140.1| RAB27B, member RAS oncogene family [Pan troglodytes]
gi|410267568|gb|JAA21750.1| RAB27B, member RAS oncogene family [Pan troglodytes]
Length = 218
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D++ QR V + +LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLQDQREVNERQARELADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|354468180|ref|XP_003496545.1| PREDICTED: ras-related protein Rab-3B-like [Cricetulus griseus]
gi|81870701|sp|Q5KTJ7.1|RAB3B_MESAU RecName: Full=Ras-related protein Rab-3B
gi|57157443|dbj|BAD83699.1| Rab3B [Mesocricetus auratus]
Length = 219
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|440302762|gb|ELP95069.1| hypothetical protein EIN_253330 [Entamoeba invadens IP1]
Length = 207
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YD+TS +SF +I W ++ + + L+ NK D+E QRVV+ E +LA+
Sbjct: 88 IAMIYDVTSKESFKNIEYWTK--NVKENADEGYNLMLIGNKSDLEQQRVVSYEEGRELAE 145
Query: 92 SLHLHSFAVSARTGDN 107
L + SA DN
Sbjct: 146 KLGIPFLETSAANSDN 161
>gi|426215520|ref|XP_004002020.1| PREDICTED: ras-related protein Rab-3B [Ovis aries]
Length = 219
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|74833811|emb|CAI39365.1| rab_A32 [Paramecium tetraurelia]
Length = 215
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ YD+++ QSF I +W++ R S L+ANK D+E +RVVT + KLA+
Sbjct: 90 VLCYDVSNAQSFADIKSWLEYVREERGSDVVG--VLIANKIDIE-ERVVTTQEGEKLAKE 146
Query: 93 LHLHSFAVSARTGDN 107
L + VSA+ G N
Sbjct: 147 QELLYYEVSAKEGTN 161
>gi|431896886|gb|ELK06150.1| Ras-related protein Rab-3B [Pteropus alecto]
Length = 219
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|145477535|ref|XP_001424790.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391856|emb|CAK57392.1| unnamed protein product [Paramecium tetraurelia]
Length = 222
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ YD+++ QSF I +W++ R S L+ANK D+E +RVVT + KLA+
Sbjct: 90 VLCYDVSNAQSFADIKSWLEYVREERGSDVVG--VLIANKIDIE-ERVVTTQEGEKLAKE 146
Query: 93 LHLHSFAVSARTGDN 107
L + VSA+ G N
Sbjct: 147 QELLYYEVSAKEGTN 161
>gi|367022590|ref|XP_003660580.1| hypothetical protein MYCTH_2314205 [Myceliophthora thermophila ATCC
42464]
gi|347007847|gb|AEO55335.1| hypothetical protein MYCTH_2314205 [Myceliophthora thermophila ATCC
42464]
Length = 205
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + ++ L+ NK D E +RVV+ ER +LA
Sbjct: 86 ILLVYDVTDERSFNNIRTW--FANVEQHATEGVNKILIGNKCDWEEKRVVSTERGQQLAD 143
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA+T N
Sbjct: 144 ELGIPFLEVSAKTNTN 159
>gi|156378540|ref|XP_001631200.1| predicted protein [Nematostella vectensis]
gi|156218236|gb|EDO39137.1| predicted protein [Nematostella vectensis]
Length = 172
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +F +I W L +++ +ST L+ NK D+E QR+V E KLA
Sbjct: 84 IILVYDITRLDTFQNIRKW--LRYVDEHASTNVQTLLLGNKCDIEQQRIVGKELGVKLAS 141
Query: 92 SLHLHSFAVSARTGDN 107
++H + SA + N
Sbjct: 142 ERNIHFYETSAYSNTN 157
>gi|123407379|ref|XP_001302997.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121884338|gb|EAX90067.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 187
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I I +D+TS SF + W+D H NR + L NK D+ QR ++ + K A
Sbjct: 77 IGIVTFDLTSTDSFETARQWIDELHQNRGDGI--IIGLAGNKRDLADQRQISFAQMHKFA 134
Query: 91 QSLHLHSFAVSARTGDN 107
Q ++ + SA++G+N
Sbjct: 135 QDTNVVAVETSAQSGEN 151
>gi|12963723|ref|NP_076026.1| ras-related protein Rab-3B [Mus musculus]
gi|38258239|sp|Q9CZT8.1|RAB3B_MOUSE RecName: Full=Ras-related protein Rab-3B
gi|12597435|gb|AAG60046.1|AF312036_1 small GTP binding protein Rab3B [Mus musculus]
gi|12848741|dbj|BAB28071.1| unnamed protein product [Mus musculus]
gi|26350141|dbj|BAC38710.1| unnamed protein product [Mus musculus]
gi|34980993|gb|AAH57173.1| RAB3B, member RAS oncogene family [Mus musculus]
gi|56078684|gb|AAH51918.2| RAB3B, member RAS oncogene family [Mus musculus]
gi|112292945|dbj|BAF02850.1| Rab3B [Mus musculus]
gi|148698774|gb|EDL30721.1| RAB3B, member RAS oncogene family, isoform CRA_a [Mus musculus]
Length = 219
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|224090593|ref|XP_002187909.1| PREDICTED: ras-related protein Rab-3C [Taeniopygia guttata]
Length = 227
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ SF+++ W + S V LV NK DME +RV+ ER LA+
Sbjct: 107 ILMYDITNEDSFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVIFTERGKHLAEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>gi|154417920|ref|XP_001581979.1| GTP-binding protein [Trichomonas vaginalis G3]
gi|121916211|gb|EAY20993.1| GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 111
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+TS S +I WV+ H + SS P +V NK D+ ++++T E KLA S
Sbjct: 1 MIVFDLTSQTSVDNIKQWVEFVH--QHSSMP--FIIVGNKEDLVDEQIITPEEALKLASS 56
Query: 93 LHLHSFAVSARTGDNCWVNTRTPEINPLKY 122
+ FA SA+ G+N + R E ++Y
Sbjct: 57 VQSQFFATSAKNGNNVDLAFRQLECIAVEY 86
>gi|355714842|gb|AES05135.1| RAB13, member RAS oncoprotein family [Mustela putorius furo]
Length = 141
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V ER KLA+
Sbjct: 22 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKERAVKLAR 79
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 80 EHGIRFFETSAKSSTN 95
>gi|348523125|ref|XP_003449074.1| PREDICTED: ras-related protein Rab-3A-like [Oreochromis niloticus]
Length = 219
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ SF+++ W + S V LV NK DME +RVV+ ER +L++
Sbjct: 98 ILMYDITNEDSFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLSEH 155
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 156 LGFEFFEASAK 166
>gi|327271153|ref|XP_003220352.1| PREDICTED: ras-related protein Rab-3B-like [Anolis carolinensis]
Length = 219
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT +SF+++ W + S V LV NK DME +R++ +E+ LA
Sbjct: 99 ILMYDITCEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEDERIIPIEKGKHLADQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDYFEASAK 167
>gi|224058186|ref|XP_002197150.1| PREDICTED: ras-related protein Rab-3B [Taeniopygia guttata]
Length = 219
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDITS SF+++ W + S V LV NK DME R+V +E+ LA
Sbjct: 99 VLMYDITSEDSFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEDDRIVPMEKGKHLADQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDYFEASAK 167
>gi|444724879|gb|ELW65466.1| Ras-related protein Rab-3B [Tupaia chinensis]
Length = 219
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|85002141|gb|ABC68472.1| Rab6A [Marsupenaeus japonicus]
Length = 212
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 86 VAVVVYDITNANSFHQTSKWIDDVRTERGS--DVIIVLVGNKTDLSDKRQVSTEEGERKA 143
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 144 KELNVMFIETSAKAGYNV 161
>gi|384491008|gb|EIE82204.1| hypothetical protein RO3G_06909 [Rhizopus delemar RA 99-880]
Length = 154
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDI+S +F + W+D R T V LV NK D+ +R VT E K A
Sbjct: 34 VAVIVYDISSKSTFLNTTKWIDDVRAER--GTEAIVVLVGNKTDLNEKREVTTEEGEKRA 91
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 92 KELNVMFIETSAKAGHN 108
>gi|76664097|emb|CAI62559.2| ras-related protein SEC4 [Nyctotherus ovalis]
Length = 203
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 16/102 (15%)
Query: 29 GKIVIFM-YDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ--------- 78
G I F+ YDITS +SF + +W + L +S+ + LV NK D++ +
Sbjct: 65 GSIGAFLVYDITSKESFEHVKSWYE--ELTEVTSSSMMICLVGNKADLDQEQAIPLTSLS 122
Query: 79 RVVTLERHAKLAQSLHLHSFAVSARTG---DNCWVNTRTPEI 117
R VT E KLA + F VSA+TG DN +++ T EI
Sbjct: 123 RKVTKEEGEKLANEYGMLFFEVSAKTGQDVDNAFISM-TQEI 163
>gi|403362358|gb|EJY80906.1| Ras-related gtp-binding protein [Oxytricha trifallax]
Length = 224
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YD TS SF+++ WV ++ S+ L+ NK D+ ++V+ E+ LA+
Sbjct: 87 IILAYDCTSEDSFNNVRNWVRQIEVHASSNVEKI--LIGNKADLTDKKVIDTEQGMALAK 144
Query: 92 SLHLHSFAVSARTGDN 107
++ F SARTG N
Sbjct: 145 EFNMKFFETSARTGHN 160
>gi|354467588|ref|XP_003496251.1| PREDICTED: ras-related protein Rab-3C-like [Cricetulus griseus]
Length = 228
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +R+++ ER L +
Sbjct: 108 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERIISTERGQHLGEQ 165
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 166 LGFEFFETSAK 176
>gi|326435833|gb|EGD81403.1| hypothetical protein PTSG_02125 [Salpingoeca sp. ATCC 50818]
Length = 442
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 15/83 (18%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV--------ALVANKGDMEHQRV 80
++V+F+YDI++ +SF ++ W R T T+V ALVANK D+EHQR
Sbjct: 82 AQVVLFVYDISNRESFENLNDW-------RAIVTKTFVDKPKKPKCALVANKVDLEHQRA 134
Query: 81 VTLERHAKLAQSLHLHSFAVSAR 103
V+ HA+ + SF VSAR
Sbjct: 135 VSPALHAQRCNNSGWMSFHVSAR 157
>gi|440906879|gb|ELR57095.1| Ras-related protein Rab-3B, partial [Bos grunniens mutus]
Length = 225
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 105 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 162
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 163 LGFDFFEASAK 173
>gi|383848739|ref|XP_003700005.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Megachile
rotundata]
Length = 211
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNPNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSMEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|363753442|ref|XP_003646937.1| hypothetical protein Ecym_5362 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890573|gb|AET40120.1| hypothetical protein Ecym_5362 [Eremothecium cymbalariae
DBVPG#7215]
Length = 209
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM---EHQRVVTLERH 86
+ + +YDIT QSF WV H ++S +ALV NK D+ + +R V E
Sbjct: 81 QAALVVYDITKPQSFIKARHWVKELH--EQASKSIIIALVGNKLDLLESDEERKVAREEA 138
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
LAQ L F SA+TGDN
Sbjct: 139 ESLAQEEGLLFFETSAKTGDN 159
>gi|325180967|emb|CCA15376.1| Rab5 family GTPase putative [Albugo laibachii Nc14]
Length = 196
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YD+T+ SF +WV L R+ + +AL NK D+E +R VTLE + A+
Sbjct: 85 AIVVYDVTNKDSFTGAKSWVK--ELQRRGDSNVVIALAGNKADLETRRAVTLEEARQYAE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+T N
Sbjct: 143 DNGILHLETSAKTSAN 158
>gi|198419776|ref|XP_002131191.1| PREDICTED: similar to RAB8B, member RAS oncogene family [Ciona
intestinalis]
Length = 185
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
K VI +YDITS +SF + WV + NR + LV NK D+E QRVVT K
Sbjct: 85 AKGVIIVYDITSLKSFSHVNNWV--INFNRWAGDDVQALLVGNKCDLEDQRVVTKMAGEK 142
Query: 89 LAQSLHLHSFAVSARTGDNC 108
LA+ H S + +C
Sbjct: 143 LAKE---HGMEFSETSAKDC 159
>gi|440801985|gb|ELR22925.1| RAB4, putative [Acanthamoeba castellanii str. Neff]
Length = 204
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 18/113 (15%)
Query: 5 KMLNLHNDNYEIQLKVVLLGDPSCGKI----------VIFMYDITSGQSFHSIPTWVDLF 54
K++N+ +N ++Q+ + G++ + +YDITS +S++ + TW++
Sbjct: 48 KIINIQGNNIKLQIW------DTAGQVTRSYYRGAAGALLVYDITSRESYNHLSTWLE-- 99
Query: 55 HLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107
+S + LV NK D+E +R VT ++ AQ +L SA TGDN
Sbjct: 100 DARTLASAGIVIILVGNKKDLEDEREVTFIEASRFAQENNLMFLETSALTGDN 152
>gi|116283597|gb|AAH18443.1| Rab27b protein [Mus musculus]
Length = 153
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 31 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAEK 89
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 90 YGIPYFETSAATGQN 104
>gi|170588641|ref|XP_001899082.1| Ras family protein [Brugia malayi]
gi|158593295|gb|EDP31890.1| Ras family protein [Brugia malayi]
Length = 219
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 32 VIFMYDITSGQSFHSIPT-WVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YD+T +SF ++ W+ L+ S+ + L+ NK D+E +R+V ER +LA
Sbjct: 82 VMCVYDLTDERSFDNLRNYWLKEIRLHAPSNA--VLMLIGNKADLEDKRMVNFERAERLA 139
Query: 91 QSLHLHSFAVSARTGDNC 108
L + + VSA+TG NC
Sbjct: 140 NELGVSLYEVSAKTGINC 157
>gi|426352937|ref|XP_004043959.1| PREDICTED: ras-related protein Rab-44 [Gorilla gorilla gorilla]
Length = 1021
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDITS +SF + W+D L S + L+ NK D E +R V++E +LAQ
Sbjct: 909 VVLMYDITSQESFAHVRYWLDC--LQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQ 966
Query: 92 SLHLHSFAVSARTGDN 107
L ++ SA G N
Sbjct: 967 ELGVYFGECSAALGHN 982
>gi|145545608|ref|XP_001458488.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831441|emb|CAI39306.1| rab_A68 [Paramecium tetraurelia]
gi|124426308|emb|CAK91091.1| unnamed protein product [Paramecium tetraurelia]
Length = 211
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ F+YDIT QSF I W++ + + S T L+ NK D+ ++R V + +LAQ
Sbjct: 87 IFFVYDITDRQSFKRIEYWMN--EVEQNSPPDTIKVLIGNKSDLNYKREVDFDEGKELAQ 144
Query: 92 SLHLHSFAVSA 102
S L F SA
Sbjct: 145 SQGLEFFESSA 155
>gi|410040739|ref|XP_527372.4| PREDICTED: ras-related protein Rab-44 [Pan troglodytes]
Length = 1027
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDITS +SF + W+D L S + L+ NK D E +R V++E +LAQ
Sbjct: 915 VVLMYDITSQESFAHVRYWLDC--LQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQ 972
Query: 92 SLHLHSFAVSARTGDN 107
L ++ SA G N
Sbjct: 973 ELGVYFGECSAALGHN 988
>gi|397496233|ref|XP_003818946.1| PREDICTED: ras-related protein Rab-44 [Pan paniscus]
Length = 1027
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDITS +SF + W+D L S + L+ NK D E +R V++E +LAQ
Sbjct: 915 VVLMYDITSQESFAHVRYWLDC--LQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQ 972
Query: 92 SLHLHSFAVSARTGDN 107
L ++ SA G N
Sbjct: 973 ELGVYFGECSAALGHN 988
>gi|390635651|ref|NP_001244286.1| ras-related protein Rab-44 [Homo sapiens]
Length = 1021
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDITS +SF + W+D L S + L+ NK D E +R V++E +LAQ
Sbjct: 909 VVLMYDITSQESFAHVRYWLDC--LQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQ 966
Query: 92 SLHLHSFAVSARTGDN 107
L ++ SA G N
Sbjct: 967 ELGVYFGECSAALGHN 982
>gi|317373517|sp|Q7Z6P3.3|RAB44_HUMAN RecName: Full=Ras-related protein Rab-44
Length = 723
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDITS +SF + W+D L S + L+ NK D E +R V++E +LAQ
Sbjct: 612 VVLMYDITSQESFAHVRYWLDC--LQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQ 669
Query: 92 SLHLHSFAVSARTGDN 107
L ++ SA G N
Sbjct: 670 ELGVYFGECSAALGHN 685
>gi|196002223|ref|XP_002110979.1| hypothetical protein TRIADDRAFT_54457 [Trichoplax adhaerens]
gi|190586930|gb|EDV26983.1| hypothetical protein TRIADDRAFT_54457 [Trichoplax adhaerens]
Length = 189
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
K V +YD+T+ +F + +W+ F + T +A+VANK D +RVV E K
Sbjct: 95 KAVFLVYDVTTRATFEDLDSWLREFQ--KYCETKAKIAVVANKIDCNQKRVVKKEEGMKW 152
Query: 90 AQSLHLHSFAVSARTG 105
A++ H F SA TG
Sbjct: 153 AKNHHAKYFETSAATG 168
>gi|330822533|ref|XP_003291705.1| hypothetical protein DICPUDRAFT_82365 [Dictyostelium purpureum]
gi|325078112|gb|EGC31782.1| hypothetical protein DICPUDRAFT_82365 [Dictyostelium purpureum]
Length = 203
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + YDIT QSF + W++ H + SS VAL+ NK D+ +RVVT++ K A
Sbjct: 80 IALLCYDITKRQSFQHLSGWMEEIH--QMSSPNIVVALIGNKCDVADKRVVTMDEGQKFA 137
Query: 91 QSLHLHSFAVSAR 103
++ F SA+
Sbjct: 138 NEHNIIFFETSAK 150
>gi|302833012|ref|XP_002948070.1| RabF/Rab5 [Volvox carteri f. nagariensis]
gi|300266872|gb|EFJ51058.1| RabF/Rab5 [Volvox carteri f. nagariensis]
Length = 203
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDITS SF +WV L R+ + +AL NK D+E QR V++E A
Sbjct: 87 AIIVYDITSPDSFTRAKSWVR--ELQRQGNPVMIMALAGNKADLESQRAVSVEEGQAYAA 144
Query: 92 SLHLHSFAVSARTGDN 107
L+ SA+T N
Sbjct: 145 ENGLYYLETSAKTAAN 160
>gi|449016131|dbj|BAM79533.1| small GTP-binding protein of Rab family [Cyanidioschyzon merolae
strain 10D]
Length = 209
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I ++D+T +SF ++ +W+ + +S LV NK D+ QRVVT ++ +LAQ
Sbjct: 86 IIIVFDVTDEESFKNVTSWIS--EIENYASESVCKLLVGNKTDLTEQRVVTRQQAEELAQ 143
Query: 92 SLHLHSFAVSARTGD 106
L + SA+T D
Sbjct: 144 RLGIPYIETSAKTAD 158
>gi|62955495|ref|NP_001017761.1| ras-related protein Rab-3A [Danio rerio]
gi|62203410|gb|AAH93355.1| Si:ch211-255d18.4 [Danio rerio]
gi|182890120|gb|AAI64318.1| Si:ch211-255d18.4 protein [Danio rerio]
Length = 220
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF ++ W + S V LV NK DME +RVV ER +L++
Sbjct: 99 ILMYDITNEESFAAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVASERGRQLSEH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEYFEASAK 167
>gi|270014377|gb|EFA10825.1| hypothetical protein TcasGA2_TC001600 [Tribolium castaneum]
Length = 209
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|157112172|ref|XP_001657423.1| rab6 [Aedes aegypti]
gi|157112174|ref|XP_001657424.1| rab6 [Aedes aegypti]
gi|108878119|gb|EAT42344.1| AAEL006091-PA [Aedes aegypti]
gi|403182767|gb|EJY57618.1| AAEL006091-PC [Aedes aegypti]
Length = 209
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|402583877|gb|EJW77820.1| Ras family protein [Wuchereria bancrofti]
Length = 155
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 32 VIFMYDITSGQSFHSIPT-WVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YD+T +SF ++ W+ L+ S+ + L+ NK D+E +R+V ER +LA
Sbjct: 18 VMCVYDLTDERSFDNLRNYWLKEIRLHAPSNA--VLMLIGNKADLEDKRMVNFERAERLA 75
Query: 91 QSLHLHSFAVSARTGDNC 108
L + + VSA+TG NC
Sbjct: 76 NQLGVSLYEVSAKTGINC 93
>gi|189502804|gb|ACE06783.1| unknown [Schistosoma japonicum]
Length = 248
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ WV + S V LV NK D+ RVV+++R LA
Sbjct: 133 ILMYDITNEESFNAVQDWVT--QIKTYSWDNAQVVLVGNKCDLVDDRVVSVDRGRHLAHQ 190
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 191 LGLEFFEASAK 201
>gi|313216504|emb|CBY37802.1| unnamed protein product [Oikopleura dioica]
gi|313232450|emb|CBY24118.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT Q+F+ + W L +S T + L+ NK D+E QR V E + A+
Sbjct: 87 AIMVYDITRRQTFNHLEAW--LTDATNHASPNTVIFLIGNKSDLEDQRDVPTEEAREFAR 144
Query: 92 SLHLHSFAVSARTGDN 107
LH SA+TG+N
Sbjct: 145 EHGLHFCEASAKTGEN 160
>gi|307191675|gb|EFN75149.1| Ras-related protein Rab-28 [Harpegnathos saltator]
Length = 238
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I++ +YD+T+ SF + W+ + +ALV NK DMEHQR V +R + A
Sbjct: 88 IILLVYDVTNSSSFEILEEWLSQIRNFIDAYDEPLIALVGNKCDMEHQRTVKRDRSHRFA 147
Query: 91 QSLHLHSFAVSARTGDN 107
+SARTG++
Sbjct: 148 AENGFPYHDMSARTGES 164
>gi|148698775|gb|EDL30722.1| RAB3B, member RAS oncogene family, isoform CRA_b [Mus musculus]
Length = 225
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 105 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 162
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 163 LGFDFFEASAK 173
>gi|431922009|gb|ELK19182.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4C [Pteropus alecto]
Length = 900
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 779 ILMYDITNEESFNAVQDWS--TQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 836
Query: 93 LHLHSFAVSARTGDN 107
L F SA+ N
Sbjct: 837 LGFEFFEASAKDNIN 851
>gi|325303662|tpg|DAA34344.1| TPA_inf: Rab6 subfamily protein [Amblyomma variegatum]
Length = 174
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R + LV NK D+ +R VT E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTER--GNDVIIMLVGNKTDLSDKRQVTTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA++G N
Sbjct: 146 KELNVMFIETSAKSGYNV 163
>gi|224001286|ref|XP_002290315.1| ypt1-like rab-type small G protein [Thalassiosira pseudonana
CCMP1335]
gi|220973737|gb|EED92067.1| ypt1-like rab-type small G protein [Thalassiosira pseudonana
CCMP1335]
Length = 201
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R + LV NK D+E +RVV+ E+ + A
Sbjct: 84 IIVVYDVTDNESFNNVKQW--LHEIDRYACENVNKLLVGNKCDLEGKRVVSTEQGKEFAD 141
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+T N
Sbjct: 142 GLGIEFLETSAKTSTN 157
>gi|158343285|gb|ABW35315.1| Rab1A1 [Gymnochlora stellata]
gi|193875838|gb|ACF24555.1| Ras-related small GTPase Rab 1a [Gymnochlora stellata]
Length = 207
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+TS +SF + W++ ++R + T LV NK D+ R V+ E LAQ
Sbjct: 92 IIMVYDVTSLESFEHVDEWLN--EVDRFAHENTCKLLVGNKADLTDDRKVSEESARALAQ 149
Query: 92 SLHLHSFAVSARTGDN 107
LH+ SA+T N
Sbjct: 150 RLHIQFLETSAKTSTN 165
>gi|189233646|ref|XP_972453.2| PREDICTED: similar to rab6 [Tribolium castaneum]
Length = 324
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 203 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 260
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 261 KELNVMFIETSAKAGYN 277
>gi|340509040|gb|EGR34616.1| hypothetical protein IMG5_005710 [Ichthyophthirius multifiliis]
Length = 210
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT Q+F I W L ++ ++ LV NK D+E++R V+ + +LA
Sbjct: 86 IILVYDITDRQTFKDIDNW--LAEADKNANENVIKLLVGNKIDLENKRQVSFDEGKELAD 143
Query: 92 SLHLHSFAVSARTG---DNCWVNTRTPEINPLKYLQSNNE 128
SL + SA T +N +V T I+ ++ NN+
Sbjct: 144 SLGIKFIETSALTASNVENAFVTLATEIISRVQKSSDNNK 183
>gi|440294324|gb|ELP87341.1| ehrabx6d protein, putative [Entamoeba invadens IP1]
Length = 227
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLF---HLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
+ ++F +DI+S SF+SI WVD + H+NRK P + L+ K D+ R V+LE
Sbjct: 83 QTILFCFDISSKNSFNSIQYWVDTYEQNHINRK--IPVRM-LLGCKSDLAKNRQVSLEEA 139
Query: 87 AKLAQSLHLHSFAVSARTGD 106
LA L SA+T D
Sbjct: 140 KALADKNELTYLECSAKTED 159
>gi|321471489|gb|EFX82462.1| hypothetical protein DAPPUDRAFT_128059 [Daphnia pulex]
Length = 208
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 RELNVMFIETSAKAGYN 162
>gi|299470548|emb|CBN78536.1| Rab28, Ras superfamily GTPase [Ectocarpus siliculosus]
Length = 242
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI YDIT+ SF + W L + YVA+V NK D+ H R V + A
Sbjct: 105 VIMCYDITNYDSFQDLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFAD 164
Query: 92 SLHLHSFAVSARTGDN 107
++++F +SA++GD
Sbjct: 165 DNNMYTFFMSAKSGDQ 180
>gi|395737180|ref|XP_003776873.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-44 [Pongo
abelii]
Length = 1018
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDITS +SF + W+D L S + L+ NK D E +R V++E +LAQ
Sbjct: 906 VVLMYDITSQESFAHVRYWLDC--LQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQ 963
Query: 92 SLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSNNE 128
L ++ SA G N P +N + L+ E
Sbjct: 964 ELGVYFGECSAALG----YNILEPVVNLARSLRMQEE 996
>gi|375153504|gb|AFA36651.1| small GTPase Rab4b [Helicoverpa armigera]
Length = 214
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVAL-VANKGDMEHQRVVTLERHAKLA 90
+ +YDITS SF+++ W+ R ++P V L V NK DME R VT ++ A
Sbjct: 84 ALLVYDITSRDSFNALSNWL---RDARTLASPNIVILLVGNKKDMEESREVTFTEASQFA 140
Query: 91 QSLHLHSFAVSARTGDN 107
Q L SA+TG+N
Sbjct: 141 QENELMFLETSAKTGEN 157
>gi|48766845|gb|AAT46563.1| Rab [Marsupenaeus japonicus]
Length = 214
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 86 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIVLVGNKTDLSDKRQVSTEEGERKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 144 KELNVMFIETSAKAGYN 160
>gi|383848737|ref|XP_003700004.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Megachile
rotundata]
Length = 209
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNPNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSMEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|119624314|gb|EAX03909.1| FLJ43093 protein, isoform CRA_b [Homo sapiens]
Length = 1328
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDITS +SF + W+D L S + L+ NK D E +R V++E +LAQ
Sbjct: 918 VVLMYDITSQESFAHVRYWLDC--LQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQ 975
Query: 92 SLHLHSFAVSARTGDN 107
L ++ SA G N
Sbjct: 976 ELGVYFGECSAALGHN 991
>gi|303390262|ref|XP_003073362.1| Rab5-like GTPase [Encephalitozoon intestinalis ATCC 50506]
gi|303302508|gb|ADM12002.1| Rab5-like GTPase [Encephalitozoon intestinalis ATCC 50506]
Length = 197
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
++ + +YDITS +SF + WV+ L+ + L+ NK D+E R V ++ +
Sbjct: 85 AQVALIVYDITSVESFETAKRWVE--ELSFEKPREFIKVLIGNKSDLEEDRKVEFQQGKE 142
Query: 89 LAQSLHLHSFAVSARTGDN 107
A S +L F SA+TG N
Sbjct: 143 YADSQNLLFFESSAKTGKN 161
>gi|195997609|ref|XP_002108673.1| hypothetical protein TRIADDRAFT_20151 [Trichoplax adhaerens]
gi|190589449|gb|EDV29471.1| hypothetical protein TRIADDRAFT_20151 [Trichoplax adhaerens]
Length = 164
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I ++DITS SF +IPTW L H+ P + +V NK D+ QR V++E ++A
Sbjct: 81 IIALFDITSKDSFENIPTW--LSHIEDWVENPPLLIMVGNKLDISDQRKVSIEDGFQMAF 138
Query: 92 SLHLHSFAVSARTGDNCW 109
+ SARTG++ +
Sbjct: 139 DHNAMYAETSARTGEHVF 156
>gi|440295946|gb|ELP88800.1| GTP-binding protein SAS1, putative [Entamoeba invadens IP1]
Length = 228
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VIF++D+++ +SF SI W+D F + T T++ L NK D+ +R+VT E A
Sbjct: 106 VIFVFDVSNKKSFDSINFWIDDFK-KSEGDTMTFM-LCGNKCDI-AERIVTKEEAKTFAD 162
Query: 92 SLHLHSFAVSARTGDN 107
+ + F SA+ G N
Sbjct: 163 KIGMKYFETSAKNGTN 178
>gi|427787277|gb|JAA59090.1| Putative rab-protein 6 [Rhipicephalus pulchellus]
Length = 208
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R + + LV NK D+ +R VT E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGND--VIIMLVGNKTDLSDKRQVTTEDGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA++G N
Sbjct: 146 KELNVMFIETSAKSGYN 162
>gi|351705685|gb|EHB08604.1| Ras-related protein Rab-30 [Heterocephalus glaber]
Length = 232
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
C +I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R
Sbjct: 111 CANALILTYDITCEESFRCLPEW--LREIEQYASNKVISVLVGNKIDLAERREVSQQRAE 168
Query: 88 KLAQSLHLHSFAVSARTGDN 107
+ +++ ++ S + DN
Sbjct: 169 EFSKAQDMYYLETSGKESDN 188
>gi|327277918|ref|XP_003223710.1| PREDICTED: ras-related protein Rab-27B-like isoform 1 [Anolis
carolinensis]
gi|327277920|ref|XP_003223711.1| PREDICTED: ras-related protein Rab-27B-like isoform 2 [Anolis
carolinensis]
Length = 218
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQ 91
+ M+D+TS QSF ++ W+ N +P V L+ NK D+ QR V ER AK LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCESPDIV-LIGNKADLSDQREVN-ERQAKDLAD 153
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 154 KYGIPYFETSAATGQN 169
>gi|355558002|gb|EHH14782.1| hypothetical protein EGK_00759 [Macaca mulatta]
gi|380787191|gb|AFE65471.1| ras-related protein Rab-3B [Macaca mulatta]
Length = 219
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF ++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFSAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|358337804|dbj|GAA31310.2| Ras-related protein Rab-3B, partial [Clonorchis sinensis]
Length = 221
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ WV + S V LV NK D+ +R V+++ +LAQ
Sbjct: 72 ILMYDITNEESFNAVQDWVT--QIKTYSWDNAQVVLVGNKCDLAEERAVSVDWGRRLAQQ 129
Query: 93 LHLHSFAVSARTGDN 107
L L F SA+ N
Sbjct: 130 LGLEFFEASAKEDVN 144
>gi|356573249|ref|XP_003554775.1| PREDICTED: ras-related protein RABA3-like [Glycine max]
Length = 236
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT QSF + WVD L + + + L+ NKGD+ QRVV E + A+
Sbjct: 101 MLVYDITKRQSFDHVARWVD--ELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAED 158
Query: 93 LHLHSFAVSARTGDN 107
L SA +G+N
Sbjct: 159 QGLFFSETSALSGEN 173
>gi|13592037|ref|NP_112353.1| ras-related protein Rab-3B [Rattus norvegicus]
gi|6093900|sp|Q63941.2|RAB3B_RAT RecName: Full=Ras-related protein Rab-3B
gi|2251196|emb|CAA74341.1| Rab3B protein [Rattus norvegicus]
gi|149035702|gb|EDL90383.1| RAB3B, member RAS oncogene family, isoform CRA_b [Rattus
norvegicus]
Length = 219
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV+ E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVIPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|440291450|gb|ELP84719.1| RAB, putative [Entamoeba invadens IP1]
Length = 192
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTP-TYVALVANKGDMEHQRVVTLER 85
S G +++F D+TS SF + +W + + K + P VAL+ NK D + RV+ +
Sbjct: 79 SSGGVIVF--DLTSKNSFLHVRSW----YKDLKEAVPDVAVALIGNKSDASNFRVIQYDE 132
Query: 86 HAKLAQSLHLHSF-AVSARTGDNCWV-------NTRTPEINPLKYLQ 124
LA+ L + F VSA+TGDN V N + E N YL+
Sbjct: 133 AKALAEELKIDIFYEVSAKTGDNIKVVFEDLLKNMKPREKNEANYLE 179
>gi|157112176|ref|XP_001657425.1| rab6 [Aedes aegypti]
gi|108878120|gb|EAT42345.1| AAEL006091-PB [Aedes aegypti]
Length = 210
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|29841146|gb|AAP06159.1| similar to NM_078963 GTP-binding protein rab3A in Drosophila
melanogaster [Schistosoma japonicum]
gi|226480624|emb|CAX73409.1| Rab-protein 8 [Schistosoma japonicum]
Length = 216
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ WV + S V LV NK D+ RVV+++R LA
Sbjct: 92 ILMYDITNEESFNAVQDWVT--QIKTYSWDNAQVVLVGNKCDLVDDRVVSVDRGRHLAHQ 149
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 150 LGLEFFEASAK 160
>gi|301089487|ref|XP_002895039.1| Rab28 family GTPase, putative [Phytophthora infestans T30-4]
gi|262103693|gb|EEY61745.1| Rab28 family GTPase, putative [Phytophthora infestans T30-4]
Length = 235
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH-AKL 89
+ + YD+T QSF + W+ + N S + LV NK D+ RVV+ E+H A +
Sbjct: 84 VALLCYDVTDAQSFSDVEDWLRV--ANENGSKQMNLHLVGNKTDLVAHRVVSNEKHEAFI 141
Query: 90 AQSLHLHSFAVSARTGDN 107
Q L F VSA++GDN
Sbjct: 142 RQHKLLGGFLVSAQSGDN 159
>gi|67479927|ref|XP_655343.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56472470|gb|EAL49954.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449702744|gb|EMD43323.1| Rab family gtpase [Entamoeba histolytica KU27]
Length = 239
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ F +DIT SF SI W+ F N+ S T + LV K D+E R +T + A
Sbjct: 80 VMCFCFDITKKASFSSISGWLREFQQNQNPSFTTKLILVGCKSDLEGNRQITTTEAEQFA 139
Query: 91 QSLHLHSFAVSART 104
Q + + SA+T
Sbjct: 140 QENKMSYYECSAKT 153
>gi|307189589|gb|EFN73950.1| Ras-related protein Rab-6A [Camponotus floridanus]
gi|307196069|gb|EFN77792.1| Ras-related protein Rab-6A [Harpegnathos saltator]
gi|332025967|gb|EGI66120.1| Ras-related protein Rab-6A [Acromyrmex echinatior]
Length = 209
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|395335642|gb|AFN54651.1| Rab GTPase [Litopenaeus vannamei]
Length = 211
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|345494735|ref|XP_001604718.2| PREDICTED: ras-related protein Rab-6A-like [Nasonia vitripennis]
Length = 209
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|167385711|ref|XP_001737452.1| rab6 [Entamoeba dispar SAW760]
gi|165899729|gb|EDR26265.1| rab6, putative [Entamoeba dispar SAW760]
Length = 208
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++FM+D+T+ +SF I W+ +F+ + T + LV NK DM +R ++ E A+
Sbjct: 64 ILFMFDVTNRESFTHIEDWMKVFYEIQNEDKKTLLVLVGNKNDMITERQISSEDAKGFAK 123
Query: 92 SLHLHSFAVSAR 103
+ +++ F SA+
Sbjct: 124 NHNINYFECSAK 135
>gi|148234577|ref|NP_001086320.1| RAB3B, member RAS oncogene family [Xenopus laevis]
gi|49256375|gb|AAH74481.1| MGC84786 protein [Xenopus laevis]
Length = 217
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDITS SF+++ W + S V LV NK DME +RV+ E+ LA
Sbjct: 99 ILMYDITSEGSFNAVQDWAT--QMKTYSWDNAQVILVGNKCDMEEERVIAPEKGKHLADQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|74834309|emb|CAI44512.1| rab_C15 [Paramecium tetraurelia]
Length = 217
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + YD+ SF SI W+ L R + ++ VANK D+++ RV++ E A LA
Sbjct: 91 VAVVCYDVEVKTSFASITRWISDVRLERGNDVIIFI--VANKIDVDN-RVISTEEGANLA 147
Query: 91 QSLHLHSFAVSARTGDN 107
+ H VSA+TG+N
Sbjct: 148 KECDAHFIEVSAKTGNN 164
>gi|351696796|gb|EHA99714.1| Ras-related protein Rab-27B [Heterocephalus glaber]
Length = 218
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|147902880|ref|NP_001085176.1| RAB30, member RAS oncogene family [Xenopus laevis]
gi|47937791|gb|AAH72360.1| MGC83515 protein [Xenopus laevis]
Length = 203
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S+ LV NK D+ +R V+ +R + A
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASSEVITVLVGNKIDLAERREVSQQRAEEFAG 142
Query: 92 SLHLHSFAVSARTGDN 107
+ +++ SA+ DN
Sbjct: 143 TQNMYYLETSAKESDN 158
>gi|297702643|ref|XP_002828282.1| PREDICTED: ras-related protein Rab-27B [Pongo abelii]
Length = 218
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLSEQREVNERQARELADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|158297778|ref|XP_001238010.2| AGAP011363-PA [Anopheles gambiae str. PEST]
gi|157014741|gb|EAU76291.2| AGAP011363-PA [Anopheles gambiae str. PEST]
Length = 209
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|74145385|dbj|BAE36145.1| unnamed protein product [Mus musculus]
Length = 225
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ + F+++ W + S V L NK DME +RVV+ ER +L +
Sbjct: 105 ILMYDITNEEPFNAVQDWST--QIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQ 162
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 163 LGFEFFETSAK 173
>gi|255644772|gb|ACU22888.1| unknown [Glycine max]
Length = 236
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT QSF + WVD L + + + L+ NKGD+ QRVV E + A+
Sbjct: 101 MLVYDITKRQSFDHVARWVD--ELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAED 158
Query: 93 LHLHSFAVSARTGDN 107
L SA +G+N
Sbjct: 159 QGLFFSETSALSGEN 173
>gi|417397377|gb|JAA45722.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
Length = 221
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEAIGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGAN 169
>gi|348576559|ref|XP_003474054.1| PREDICTED: ras-related protein Rab-27B-like [Cavia porcellus]
Length = 218
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|5852192|gb|AAD53965.1| GTP-binding protein [Rattus norvegicus]
Length = 112
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV+ E+ LA+
Sbjct: 38 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVIPTEKGRLLAEQ 95
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 96 LGFDFFEASAK 106
>gi|449444622|ref|XP_004140073.1| PREDICTED: ras-related protein RABF1-like [Cucumis sativus]
gi|449490416|ref|XP_004158599.1| PREDICTED: ras-related protein RABF1-like [Cucumis sativus]
Length = 199
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDITS SF WV L + S +ALV NK D++ +R VT++ + A
Sbjct: 107 VAVIVYDITSSDSFAKAQYWVK--ELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYA 164
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA+T DN
Sbjct: 165 EKNGMFFIETSAKTADN 181
>gi|115534952|ref|NP_508455.2| Protein K02E10.1 [Caenorhabditis elegans]
gi|351063986|emb|CCD72274.1| Protein K02E10.1 [Caenorhabditis elegans]
Length = 218
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YD+T+ +SF ++ + L + + + + LV NK DM+ +R V +R KLA
Sbjct: 82 VMCVYDMTNEKSFENLEKYW-LKEIKQHAPPNAVLMLVGNKADMDQERKVDFDRAEKLAS 140
Query: 92 SLHLHSFAVSARTGDNC 108
L + + VSA+TG NC
Sbjct: 141 RLGVSLYEVSAKTGINC 157
>gi|322788802|gb|EFZ14370.1| hypothetical protein SINV_10021 [Solenopsis invicta]
Length = 722
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-----VALVANKGDMEHQRVVTLER 85
IV+ +YD+T+ SF + W+ KS TY +A+V NK DMEHQR V +R
Sbjct: 571 IVLLVYDVTNSSSFDILEEWLSKI----KSFIDTYDEMPLMAIVGNKCDMEHQRTVKRDR 626
Query: 86 HAKLAQSLHLHSFAVSARTGDN 107
+ A +SARTG++
Sbjct: 627 SHRFAAENGFSYHDMSARTGES 648
>gi|170036653|ref|XP_001846177.1| trypsin [Culex quinquefasciatus]
gi|167879490|gb|EDS42873.1| trypsin [Culex quinquefasciatus]
Length = 283
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 34 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 91
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 92 KELNVMFIETSAKAGYN 108
>gi|328866453|gb|EGG14837.1| Rab GTPase [Dictyostelium fasciculatum]
Length = 231
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVAL-VANKGDMEHQRVVTLERHAKL 89
I + +YDIT+ QSF + +W++ + STP V L + NK D + +RVVTLE +
Sbjct: 81 IALLVYDITNRQSFQYLGSWLEEIA---QMSTPNIVTLLIGNKCDAKERRVVTLEEAQRF 137
Query: 90 AQSLHLHSFAVSARTGDN 107
A+S L SA+ N
Sbjct: 138 AKSNDLIFIETSAKDNTN 155
>gi|126321643|ref|XP_001366811.1| PREDICTED: ras-related protein Rab-27B-like [Monodelphis domestica]
Length = 218
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V ++ LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLSDQREVNEQQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|313229256|emb|CBY23842.1| unnamed protein product [Oikopleura dioica]
Length = 213
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT ++F +I W L ++N +S L+ NK DME +R+++ ER K+A+
Sbjct: 92 ILLVYDITQPKTFDNISKW--LRNINEHASEDVERMLIGNKCDMEDKRLISEERGRKVAE 149
Query: 92 SLHLHSFAVSAR 103
+ F SA+
Sbjct: 150 ENGIKFFETSAK 161
>gi|294877245|ref|XP_002767937.1| Rab6, putative [Perkinsus marinus ATCC 50983]
gi|239869971|gb|EER00655.1| Rab6, putative [Perkinsus marinus ATCC 50983]
Length = 246
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK--SSTPTYVALVANKGDMEHQRVVTLERHAKL 89
VI +YDITS QSF + W+ L + + S + L+ANK D+EH R+V+ +H+
Sbjct: 103 VIMVYDITSYQSFQDLNDWLHLVYGCPELLFSIDRLLFLMANKDDLEHMRMVSRAKHSVF 162
Query: 90 AQSLHLHS-FAVSARTGDN 107
A + F VSA+TGD
Sbjct: 163 ALERGMSGHFLVSAKTGDE 181
>gi|127138858|ref|NP_085031.3| ras-related protein Rab-27B [Mus musculus]
gi|127139212|ref|NP_001076022.1| ras-related protein Rab-27B [Mus musculus]
gi|20178055|sp|Q99P58.3|RB27B_MOUSE RecName: Full=Ras-related protein Rab-27B
gi|12963389|gb|AAK11242.1|AF328893_1 Ras-related protein RAB27b [Mus musculus]
gi|19911175|dbj|BAB86914.1| Rab27B [Mus musculus]
gi|21411187|gb|AAH32928.1| Rab27b protein [Mus musculus]
gi|26340592|dbj|BAC33958.1| unnamed protein product [Mus musculus]
gi|34850467|dbj|BAC87832.1| Rab27B [Mus musculus]
gi|112293015|dbj|BAF02885.1| Rab27B [Mus musculus]
gi|148677638|gb|EDL09585.1| RAB27b, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|148677639|gb|EDL09586.1| RAB27b, member RAS oncogene family, isoform CRA_a [Mus musculus]
Length = 218
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|301759907|ref|XP_002915768.1| PREDICTED: ras-related protein Rab-3B-like [Ailuropoda melanoleuca]
gi|281353546|gb|EFB29130.1| hypothetical protein PANDA_003782 [Ailuropoda melanoleuca]
Length = 219
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEDSFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|387017934|gb|AFJ51085.1| ras-related protein Rab-27B-like [Crotalus adamanteus]
Length = 218
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQ 91
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V ER AK LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLSDQREVN-ERQAKELAD 153
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 154 KYGIPYFETSAATGQN 169
>gi|345305709|ref|XP_001509953.2| PREDICTED: ras-related protein Rab-27B-like [Ornithorhynchus
anatinus]
Length = 218
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLSDQREVNERQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
L F SA TG N
Sbjct: 155 YGLPYFETSAATGQN 169
>gi|196011170|ref|XP_002115449.1| hypothetical protein TRIADDRAFT_29154 [Trichoplax adhaerens]
gi|190582220|gb|EDV22294.1| hypothetical protein TRIADDRAFT_29154 [Trichoplax adhaerens]
Length = 222
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ SF+++ W + S V LV NK D E +RVV+++R +LA
Sbjct: 102 ILMYDITNEDSFNAVQDWST--QIKTYSWDNAQVVLVGNKCDREDERVVSIDRGKQLADQ 159
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 160 LGFPFFETSAK 170
>gi|66792523|gb|AAH96496.1| RAB27b, member RAS oncogene family [Mus musculus]
Length = 218
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|389749162|gb|EIM90339.1| ras-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 214
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ SF S W+D R + V LV NK D+ +R VTLE +
Sbjct: 94 VAIVVFDITNRASFMSTTKWIDDVRSERGNDV--MVVLVGNKADLSDKRQVTLEEATAKS 151
Query: 91 QSLHLHSFAVSARTGDN 107
Q L++ SA+ G N
Sbjct: 152 QQLNIMFMETSAKAGHN 168
>gi|146386539|pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
gi|146386540|pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
gi|146386541|pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
gi|146386542|pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 98 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAEK 156
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 157 YGIPYFETSAATGQN 171
>gi|324525564|gb|ADY48564.1| Ras-related protein Rab-6.2 [Ascaris suum]
Length = 207
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 86 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSTEEGERKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 144 KELNVMFIETSAKAGYN 160
>gi|440297013|gb|ELP89743.1| hypothetical protein EIN_424250 [Entamoeba invadens IP1]
Length = 202
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+TS +SF +I W D ++N+ + + L+ NK D+E RVV+ E+ LA
Sbjct: 89 IILVYDVTSKESFENIKYWSD--NVNKNAEEYVELMLIGNKTDLEQNRVVSSEQGQMLAD 146
Query: 92 SLHL 95
+L +
Sbjct: 147 TLGI 150
>gi|432873564|ref|XP_004072279.1| PREDICTED: ras-related protein Rab-3C-like [Oryzias latipes]
Length = 219
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF ++ W + S V L NK DME +RVV++E LA+
Sbjct: 98 ILMYDITNEESFGAVQDWST--QIKTYSWDNAQVVLAGNKCDMEEERVVSVESGRLLAEQ 155
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 156 LGFEFFETSAK 166
>gi|51480434|gb|AAH80215.1| Rab6b protein [Danio rerio]
Length = 207
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 87 VAVVVYDITNVNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 144
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 145 KELSVMFIETSAKTGCN 161
>gi|51010929|ref|NP_001003419.1| ras-related protein Rab-3C [Danio rerio]
gi|50370044|gb|AAH75980.1| RAB3A, member RAS oncogene family [Danio rerio]
Length = 220
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ SF+++ W + S V LV NK DME +RVV +R +L++
Sbjct: 99 ILMYDITNEDSFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVAGQRGRQLSEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|73976938|ref|XP_849630.1| PREDICTED: ras-related protein Rab-3B isoform 1 [Canis lupus
familiaris]
Length = 219
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEDSFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|145503838|ref|XP_001437891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834329|emb|CAI44518.1| rab_B61 [Paramecium tetraurelia]
gi|124405052|emb|CAK70494.1| unnamed protein product [Paramecium tetraurelia]
Length = 211
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF S+ W + +++ + LV NK DM+ +R V+ E LA+
Sbjct: 88 IIIVYDITDRESFDSVKMW--MSEIDKYAQEDVIRMLVGNKCDMDDKRAVSYEEGEALAK 145
Query: 92 SLHLHSFAVSARTGDN 107
L L SA+ N
Sbjct: 146 QLKLQFIETSAKLSTN 161
>gi|390362735|ref|XP_791590.3| PREDICTED: ras-related protein Rab-6A-like [Strongylocentrotus
purpuratus]
Length = 211
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+++ + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIDEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|313242103|emb|CBY34279.1| unnamed protein product [Oikopleura dioica]
Length = 213
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT ++F +I W L ++N +S L+ NK DME +R+++ ER K+A+
Sbjct: 92 ILLVYDITQPKTFDNISKW--LRNINEHASEDVERMLIGNKCDMEDKRLISEERGRKVAE 149
Query: 92 SLHLHSFAVSAR 103
+ F SA+
Sbjct: 150 ENGIKFFETSAK 161
>gi|399163147|gb|AFP33149.1| rab-6.2, partial [Caenorhabditis elegans]
Length = 204
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R VT + + A
Sbjct: 84 VAVVVYDITNSNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVTTDEGERKA 141
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 142 KELNVMFIETSAKAGYN 158
>gi|340503618|gb|EGR30169.1| ras oncogene family protein, putative [Ichthyophthirius
multifiliis]
Length = 210
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT Q+F I W L ++ ++ LV NK D+E++R V+ + +LA
Sbjct: 86 IILVYDITDRQTFKDIDNW--LAEADKNANENVVKLLVGNKIDLENKRQVSFDEGKELAD 143
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA T +N
Sbjct: 144 SLGIKFIETSALTANN 159
>gi|339248033|ref|XP_003375650.1| GTP-binding protein Ryh1 [Trichinella spiralis]
gi|316970962|gb|EFV54813.1| GTP-binding protein Ryh1 [Trichinella spiralis]
Length = 227
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ +YD+T+ SF I W L + +V NK D+EHQR V E+ +L
Sbjct: 92 MLVYDVTNAASFDKIKDWYRLVQRAVGDDEQRKVRFMVVGNKTDLEHQRNVKYEKQQELV 151
Query: 91 QSLHLHSFAVSARTGDN 107
+ H+ S SA+ GD+
Sbjct: 152 KRYHMLSCQTSAKLGDS 168
>gi|308489025|ref|XP_003106706.1| CRE-RAB-6.2 protein [Caenorhabditis remanei]
gi|308253360|gb|EFO97312.1| CRE-RAB-6.2 protein [Caenorhabditis remanei]
Length = 205
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R VT + + A
Sbjct: 85 VAVVVYDITNSNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVTTDEGERKA 142
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 143 KELNVMFIETSAKAGYN 159
>gi|17570073|ref|NP_510790.1| Protein RAB-6.2 [Caenorhabditis elegans]
gi|74966331|sp|Q22782.1|RAB6B_CAEEL RecName: Full=Ras-related protein Rab-6.2
gi|351059242|emb|CCD74453.1| Protein RAB-6.2 [Caenorhabditis elegans]
Length = 205
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R VT + + A
Sbjct: 85 VAVVVYDITNSNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVTTDEGERKA 142
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 143 KELNVMFIETSAKAGYN 159
>gi|328865966|gb|EGG14352.1| Rab GTPase [Dictyostelium fasciculatum]
Length = 200
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI +YDIT +SF W+ +N+ + + LV NK DM QR V+ E+ LA+
Sbjct: 86 VILVYDITDVKSFERCRDWIA--DINQYTQNGMIIVLVGNKIDMTAQRKVSFEQGKALAE 143
Query: 92 SLHLHSFAVSAR 103
L++ F SA+
Sbjct: 144 ELNIKFFETSAK 155
>gi|307777852|dbj|BAJ21322.1| Rab-family small GTPase RabX1F [Tetrahymena thermophila]
Length = 174
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 3 EVKMLNLHNDNYEIQLKVVLLGDPSCGK---------IVIFMYDITSGQSFHSIPTWVDL 53
+ ++L L N EI+ + L + + K I++ +YD+T+ SF +I +
Sbjct: 45 DCQVLRLKKGNVEIKFQFWDLNELTREKTLKYYRQTSILMIIYDVTNRNSFTNIKNYYKD 104
Query: 54 FHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGD 106
F + + + +ALV NK D+ R+V+ LA+SL + F VSA TGD
Sbjct: 105 FV--EQENQQSIIALVGNKKDLNESRLVSFFEGQNLAKSLGVEFFEVSAFTGD 155
>gi|432854572|ref|XP_004067967.1| PREDICTED: ras-related protein Rab-3A-like [Oryzias latipes]
Length = 219
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ SF+++ W + S V LV NK DME +RVV+ +R +L++
Sbjct: 98 ILMYDITNEDSFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSADRGRQLSEH 155
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 156 LGFEFFEASAK 166
>gi|348520842|ref|XP_003447936.1| PREDICTED: ras-related protein Rab-3D-like [Oreochromis niloticus]
Length = 221
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDITS +SF ++ W + S V LVANK D+E R V E +LA+
Sbjct: 101 LLMYDITSQESFCAVQDWAT--QIKTYSWDNAQVVLVANKLDLEDDRQVPTEDGKRLAKE 158
Query: 93 LHLHSFAVSAR 103
L H F SA+
Sbjct: 159 LGFHFFEASAK 169
>gi|324509113|gb|ADY43839.1| Ras-related protein Rab-1A [Ascaris suum]
Length = 155
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YD+T +SF ++ + L + + + + LV NK D+E QR V +R +LA
Sbjct: 18 VMCVYDLTDERSFENLQNYW-LKEIRNHAPSNAVLMLVGNKADLEDQRKVDFDRAEQLAS 76
Query: 92 SLHLHSFAVSARTGDNC 108
L + + VSA+TG NC
Sbjct: 77 RLGVSLYEVSAKTGINC 93
>gi|324520808|gb|ADY47717.1| Ras-related protein Rab-1A [Ascaris suum]
Length = 219
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YD+T +SF ++ + L + + + + LV NK D+E QR V +R +LA
Sbjct: 82 VMCVYDLTDERSFENLQNYW-LKEIRNHAPSNAVLMLVGNKADLEDQRKVDFDRAEQLAS 140
Query: 92 SLHLHSFAVSARTGDNC 108
L + + VSA+TG NC
Sbjct: 141 RLGVSLYEVSAKTGINC 157
>gi|343427853|emb|CBQ71379.1| probable YPT6-GTP-binding protein of the rab family [Sporisorium
reilianum SRZ2]
Length = 218
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF + WVD R + LV NK D+ +R VT E K A
Sbjct: 93 VAVVVYDITNRASFQNTSKWVDDVRAER--GNDVIIVLVGNKTDLSDKRQVTTEEAEKKA 150
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q ++ SA+ G N V
Sbjct: 151 QEFNVMFIETSAKAGHNVKV 170
>gi|351710497|gb|EHB13416.1| Ras-related protein Rab-11A [Heterocephalus glaber]
Length = 154
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 12 DNYEIQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVAN 71
D Y+ KVVL GD GK + +YDI ++ ++ W L L + + T + LV +
Sbjct: 5 DEYDCLFKVVLTGDSGVGKSALLVYDIAKHLTYENVERW--LKELRDHADSNTVIMLVGS 62
Query: 72 KGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107
K D+ H R V + A+ L SA N
Sbjct: 63 KSDLHHLRAVPTDEARAFAEKNGLSFIGTSALDSTN 98
>gi|341903589|gb|EGT59524.1| CBN-RAB-6.2 protein [Caenorhabditis brenneri]
Length = 205
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R VT + + A
Sbjct: 85 VAVVVYDITNSNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVTTDEGERKA 142
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 143 KELNVMFIETSAKAGYN 159
>gi|308495033|ref|XP_003109705.1| hypothetical protein CRE_07553 [Caenorhabditis remanei]
gi|308245895|gb|EFO89847.1| hypothetical protein CRE_07553 [Caenorhabditis remanei]
Length = 218
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YD+T+ +SF ++ + L + + + + LV NK D++ +R V +R KLA
Sbjct: 82 VMCVYDMTNEKSFENLEKYW-LKEIKQHAPANAVLMLVGNKADLDQERKVDFDRAEKLAS 140
Query: 92 SLHLHSFAVSARTGDNC 108
L + + VSA+TG NC
Sbjct: 141 RLGVSLYEVSAKTGINC 157
>gi|301610329|ref|XP_002934692.1| PREDICTED: ras-related protein Rab-39B-like [Xenopus (Silurana)
tropicalis]
Length = 206
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLN---RKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
V+ ++D+T+ QSF ++ W H+ R + P L+ K D++ +R+VT E +
Sbjct: 85 VLLLFDLTTRQSFDNVTEW----HMEVTERTQAKPMVFMLLGAKNDLKEKRMVTREEAQR 140
Query: 89 LAQSLHLHSFAVSARTGDN 107
LA++L SARTG N
Sbjct: 141 LAENLSAPYLETSARTGSN 159
>gi|268576735|ref|XP_002643347.1| C. briggsae CBR-RAB-6.2 protein [Caenorhabditis briggsae]
Length = 205
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R VT + + A
Sbjct: 85 VAVVVYDITNSNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVTTDEGERKA 142
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 143 KELNVMFIETSAKAGYN 159
>gi|341874146|gb|EGT30081.1| hypothetical protein CAEBREN_09471 [Caenorhabditis brenneri]
Length = 218
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YD+T+ +SF ++ + L + + + + LV NK D++ +R V +R KLA
Sbjct: 82 VMCVYDMTNEKSFENLEKYW-LKEIKQHAPANAVLMLVGNKADLDQERKVDFDRAEKLAS 140
Query: 92 SLHLHSFAVSARTGDNC 108
L + + VSA+TG NC
Sbjct: 141 RLGVSLYEVSAKTGINC 157
>gi|198430343|ref|XP_002121682.1| PREDICTED: similar to GTP-binding protein [Ciona intestinalis]
Length = 209
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 86 VAVVVYDITNVNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLSDKRQVSIEEGERKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 144 KELNVMFIETSAKTGYN 160
>gi|67478177|ref|XP_654505.1| Ras family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56471558|gb|EAL49119.1| Ras family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449705890|gb|EMD45843.1| Ras family gtpase [Entamoeba histolytica KU27]
Length = 196
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 21 VLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQ 78
V LGD I +Y I QSF + T+ D L++ L NK D+E
Sbjct: 75 VKLGDG-----FIIVYSIIEQQSFFDVSTYKDSLRVLLSKTQEERINACLCGNKLDLEEY 129
Query: 79 RVVTLERHAKLAQSLHLHSFAVSARTGDN 107
RVVT E A LA+ H+ + VSA+T N
Sbjct: 130 RVVTTENAAALAKEWHMLFYEVSAKTNQN 158
>gi|145508774|ref|XP_001440331.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831449|emb|CAI39308.1| rab_C36 [Paramecium tetraurelia]
gi|124407548|emb|CAK72934.1| unnamed protein product [Paramecium tetraurelia]
Length = 184
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 MYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH 94
+YD+T+ QSF + WVD ++ P L+ NK D+ R VT E +LA +L
Sbjct: 86 VYDVTNKQSFEEVAKWVDQLKIDTNPDVPK--ILIGNKSDLNGAREVTPEEGQQLANTLG 143
Query: 95 LHSFAVSARTGDNC 108
+ SA+ G N
Sbjct: 144 VQYIETSAKEGFNV 157
>gi|327267235|ref|XP_003218408.1| PREDICTED: ras-related protein Rab-6B-like [Anolis carolinensis]
Length = 208
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 146 KELNVMFIETSAKTGYN 162
>gi|47216418|emb|CAG01969.1| unnamed protein product [Tetraodon nigroviridis]
Length = 219
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ SF+++ W + S V LV NK DME +RVV +R +L+
Sbjct: 98 ILMYDITNEDSFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEEERVVASQRGRQLSDQ 155
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 156 LGFEFFEASAK 166
>gi|55733645|emb|CAH93499.1| hypothetical protein [Pongo abelii]
Length = 129
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 9 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 66
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 67 KELSVMFIETSAKTGYN 83
>gi|407035371|gb|EKE37665.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 190
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YD+T+ SF I W D K+ LV NK D +R+V+ E +LA+
Sbjct: 81 AVIVYDVTNRTSFEDIRGWCDEIF---KAEPDVVCMLVGNKADNNQERLVSSEEGEELAK 137
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+TGDN
Sbjct: 138 ELGILFSEASAKTGDN 153
>gi|149470816|ref|XP_001507156.1| PREDICTED: ras-related protein Rab-30-like, partial
[Ornithorhynchus anatinus]
Length = 190
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + +Q
Sbjct: 72 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSQ 129
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 130 AQDMYYLETSAKESDN 145
>gi|307777844|dbj|BAJ21318.1| Rab-family small GTPase RabX1E [Tetrahymena thermophila]
Length = 176
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV--ALVANKGDM-EHQRVVTLERHA 87
+I YD+T+ QSF W F + SS YV +L+ NK D+ E R V+ +
Sbjct: 84 FIIICYDVTNRQSFQKAYNWYLDF---KNSSNNKYVVLSLIGNKCDLQEEHRQVSYQEAQ 140
Query: 88 KLAQSLHLHSFAVSARTG 105
+LAQSL + F +SA+TG
Sbjct: 141 QLAQSLGMVFFEISAKTG 158
>gi|291226755|ref|XP_002733355.1| PREDICTED: RAB37, member RAS oncogene family-like, partial
[Saccoglossus kowalevskii]
Length = 176
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T+ QSF +I W L +N ++ + L+ NK DM +RVV E KL++
Sbjct: 60 LLLLYDVTNRQSFDNIRAW--LSEINEYANQNVVIMLLGNKADMSSERVVKREEGEKLSR 117
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+TG N
Sbjct: 118 DHGVAFMETSAKTGMN 133
>gi|407854096|gb|EKG06642.1| small GTP-binding protein RAB6, putative [Trypanosoma cruzi]
Length = 272
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
S G IV+ YDITS SF W+D R S + LV NK D + +RVV+ E
Sbjct: 110 SSGTIVV--YDITSRASFLGTFKWIDEVRAERGDSVVIF--LVGNKLDAQEKRVVSTEEA 165
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
K A+ +L VSA+ G N
Sbjct: 166 QKKAEEYNLVFMEVSAKQGKN 186
>gi|123468940|ref|XP_001317685.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121900425|gb|EAY05462.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 198
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
G IV+F D+T SF W++ R + LV NK D++ R VTLE
Sbjct: 78 GGIVVF--DLTDSSSFAKSKQWINEIRAARGDDCTIF--LVGNKSDLQSIRTVTLETMQN 133
Query: 89 LAQSLHLHSFAVSARTGDN 107
A+S+++ + SA+TG+N
Sbjct: 134 FAKSINVSVYETSAKTGEN 152
>gi|407040332|gb|EKE40072.1| Ras family GTPase [Entamoeba nuttalli P19]
Length = 196
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 21 VLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQ 78
V LGD I +Y I QSF + T+ D L++ L NK D+E
Sbjct: 75 VKLGDG-----FIIVYSIIEQQSFFDVSTYKDSLRVLLSKTQEERINACLCGNKLDLEEY 129
Query: 79 RVVTLERHAKLAQSLHLHSFAVSARTGDN 107
RVVT E A LA+ H+ + VSA+T N
Sbjct: 130 RVVTTENAAALAKEWHMLFYEVSAKTNQN 158
>gi|242794469|ref|XP_002482380.1| Rab GTPase SrgA, putative [Talaromyces stipitatus ATCC 10500]
gi|218718968|gb|EED18388.1| Rab GTPase SrgA, putative [Talaromyces stipitatus ATCC 10500]
Length = 206
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + +S + L+ NK D E +R VT E+ KLA
Sbjct: 86 ILLVYDVTDERSFNNIRTWFS--NVEQHASEGVHKILIGNKCDWEEKRAVTTEQGQKLAD 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|195114920|ref|XP_002002015.1| GI14260 [Drosophila mojavensis]
gi|193912590|gb|EDW11457.1| GI14260 [Drosophila mojavensis]
Length = 208
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 87 VAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 144
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 145 KDLNVMFIETSAKAGYN 161
>gi|440292195|gb|ELP85437.1| rab9, putative [Entamoeba invadens IP1]
Length = 199
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV---TLERHA 87
+ + ++DIT ++F+++ WVD L + +S T + +V NK D+ QR+V T++ +
Sbjct: 106 VALLVFDITRQETFNAVTDWVD--ELKQNTSNSTMIFIVGNKCDLADQRLVKESTIQDYI 163
Query: 88 KLAQSLHLHSFAVSARTGDN 107
K + S + SA+TG N
Sbjct: 164 KASNSNIIGYMECSAKTGKN 183
>gi|395333800|gb|EJF66177.1| ras-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 214
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ QSF S W+D R + + LV NK D+ +R VTLE A
Sbjct: 93 VAIVVFDITNRQSFLSTSKWIDDVRSERGNDV--IIVLVGNKADLSDKRQVTLEEANAKA 150
Query: 91 QSLHLHSFAVSARTGDN 107
L++ SA+ G N
Sbjct: 151 TQLNIMFMETSAKAGHN 167
>gi|195443010|ref|XP_002069232.1| GK21078 [Drosophila willistoni]
gi|194165317|gb|EDW80218.1| GK21078 [Drosophila willistoni]
Length = 208
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 87 VAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 144
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 145 KELNVMFIETSAKAGYN 161
>gi|74833792|emb|CAI39359.1| rab_A47 [Paramecium tetraurelia]
Length = 196
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ V +Y + SF + TW+D ++ + LVANK D+ + V TLE +
Sbjct: 75 AQAVSLVYSVVDKNSFQQVQTWIDNLK-DQIDCEQVSIVLVANKCDIAQREVTTLEGQ-Q 132
Query: 89 LAQSLHLHSFAVSARTG 105
LAQ + F SARTG
Sbjct: 133 LAQKYQIKYFECSARTG 149
>gi|197945506|gb|ACH80231.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
Length = 107
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
S G I++F D+T+ QSF + W + + + + +V NK D+E +R V E
Sbjct: 1 SIGGILVF--DVTNRQSFEDVQKWHN--EIQGYACDKIEMVIVGNKIDLEERREVKTEEG 56
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
K AQ F SA+TG+N
Sbjct: 57 KKFAQKFGFDYFETSAKTGEN 77
>gi|145534097|ref|XP_001452793.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420492|emb|CAK85396.1| unnamed protein product [Paramecium tetraurelia]
Length = 222
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT+ SFH++ W++ + + + L NK D+E +R VT E + AQS
Sbjct: 84 LLVYDITNKNSFHNLQRWME--EIKNNGNANMVIVLCGNKIDLESERAVTYEEGWQYAQS 141
Query: 93 LHLHSFAVSARTGDN 107
L +SA+ G N
Sbjct: 142 QSLIFLEISAKQGIN 156
>gi|403352976|gb|EJY76019.1| Rab6, RAB family GTPase [Oxytricha trifallax]
Length = 221
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DITS QSF S+ W++ + L NK D+ QR V+ E A
Sbjct: 90 VAIVVFDITSRQSFQSVDKWIE--DAKNLRDDDVLLILAGNKADLADQRQVSYEEATDYA 147
Query: 91 QSLHLHSFAVSARTGDN 107
++ F VSAR G N
Sbjct: 148 AKRNIMYFEVSARAGTN 164
>gi|240281309|gb|EER44812.1| GTP-binding protein [Ajellomyces capsulatus H143]
Length = 204
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + +S + L+ NK D E +R VT E+ KLA
Sbjct: 85 ILLVYDVTDERSFNNIRTWFS--NVEQHASEGVHKMLIGNKCDWEEKRAVTTEQGQKLAD 142
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 143 ELGIPFLEVSAK 154
>gi|159477721|ref|XP_001696957.1| small rab-related GTPase [Chlamydomonas reinhardtii]
gi|158274869|gb|EDP00649.1| small rab-related GTPase [Chlamydomonas reinhardtii]
Length = 202
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDITS SF +WV L R+ + +AL NK D+E QR VT+E A
Sbjct: 87 AIIVYDITSPDSFTRAKSWVR--ELQRQGNPNMIMALAGNKADLEGQRAVTVEEAQAYAA 144
Query: 92 SLHLHSFAVSARTGDN 107
L SA+T N
Sbjct: 145 ENGLFYVETSAKTSAN 160
>gi|145540014|ref|XP_001455697.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423505|emb|CAK88300.1| unnamed protein product [Paramecium tetraurelia]
Length = 206
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V +Y + SF + TW+D ++ + LVANK D+ + V TLE +LAQ
Sbjct: 88 VSLVYSVVDKNSFQQVQTWIDNLK-DQIDCEQVSIVLVANKCDIAQREVTTLEGQ-QLAQ 145
Query: 92 SLHLHSFAVSARTG 105
+ F SARTG
Sbjct: 146 KYQIKYFECSARTG 159
>gi|17137220|ref|NP_477172.1| Rab6 [Drosophila melanogaster]
gi|125985285|ref|XP_001356406.1| GA19714 [Drosophila pseudoobscura pseudoobscura]
gi|194765981|ref|XP_001965103.1| GF23429 [Drosophila ananassae]
gi|194861334|ref|XP_001969761.1| GG10272 [Drosophila erecta]
gi|195035425|ref|XP_001989178.1| GH10191 [Drosophila grimshawi]
gi|195147148|ref|XP_002014542.1| GL18897 [Drosophila persimilis]
gi|195351007|ref|XP_002042028.1| GM26307 [Drosophila sechellia]
gi|195387894|ref|XP_002052627.1| GJ20647 [Drosophila virilis]
gi|195472321|ref|XP_002088449.1| GE12402 [Drosophila yakuba]
gi|2313037|dbj|BAA21707.1| rab6 [Drosophila melanogaster]
gi|7297923|gb|AAF53168.1| Rab6 [Drosophila melanogaster]
gi|16648070|gb|AAL25300.1| GH09086p [Drosophila melanogaster]
gi|54644730|gb|EAL33470.1| GA19714 [Drosophila pseudoobscura pseudoobscura]
gi|190617713|gb|EDV33237.1| GF23429 [Drosophila ananassae]
gi|190661628|gb|EDV58820.1| GG10272 [Drosophila erecta]
gi|193905178|gb|EDW04045.1| GH10191 [Drosophila grimshawi]
gi|194106495|gb|EDW28538.1| GL18897 [Drosophila persimilis]
gi|194123852|gb|EDW45895.1| GM26307 [Drosophila sechellia]
gi|194149084|gb|EDW64782.1| GJ20647 [Drosophila virilis]
gi|194174550|gb|EDW88161.1| GE12402 [Drosophila yakuba]
gi|220945102|gb|ACL85094.1| Rab6-PA [synthetic construct]
gi|220954838|gb|ACL89962.1| Rab6-PA [synthetic construct]
Length = 208
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 87 VAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 144
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 145 KELNVMFIETSAKAGYN 161
>gi|74834229|emb|CAI44488.1| rab_A73 [Paramecium tetraurelia]
Length = 213
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I ++ +TS +SF S+P WV N S +++V N D+E +R V+ E + A
Sbjct: 86 IIIVFKLTSRESFLSVPGWVKDIQDN--SDQGVVISMVGNMSDLEAERTVSNEEARQKAM 143
Query: 92 SLHLHSFAVSARTG---DNCWVNTR---TPEINPLKYLQSNNEYNF 131
+ F SA TG D+ ++NT + + NP++ +N+E N+
Sbjct: 144 EYNALYFETSAATGQNIDDIFINTLEKVSQQNNPIR---TNSEQNY 186
>gi|328354607|emb|CCA41004.1| GTP-binding protein YPT6 [Komagataella pastoris CBS 7435]
Length = 250
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I +YD TS SF S+ W D R + + LVANK D+ QRV++ E K A
Sbjct: 127 VAIIVYDTTSKSSFQSVDKWCDDVRNERGENV--IICLVANKADLADQRVISTEDGEKKA 184
Query: 91 QSLHLHSF 98
L + F
Sbjct: 185 TGLKVDLF 192
>gi|302766964|ref|XP_002966902.1| rab family GTPase [Selaginella moellendorffii]
gi|300164893|gb|EFJ31501.1| rab family GTPase [Selaginella moellendorffii]
Length = 221
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM-EHQRVVTLERHAKLA 90
+I +YD+T SF++I WV ++ + +S LV NK DM E +R VT + LA
Sbjct: 92 IILVYDVTDESSFNNIRNWVK--NIEQNASENVSRVLVGNKADMDESKRAVTTAQGQALA 149
Query: 91 QSLHLHSFAVSARTGDN 107
+ F SA+TG N
Sbjct: 150 NEYGIRFFETSAKTGQN 166
>gi|167386310|ref|XP_001737703.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165899384|gb|EDR25995.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 196
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 21 VLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQ 78
V LGD I +Y I QSF + T+ D L++ L NK D+E
Sbjct: 75 VKLGDG-----FIIVYSIIEQQSFFDVSTYKDSLRVLLSKTQEERINACLCGNKLDLEEY 129
Query: 79 RVVTLERHAKLAQSLHLHSFAVSARTGDN 107
RVVT E A LA+ H+ + VSA+T N
Sbjct: 130 RVVTTENAAALAKEWHMLFYEVSAKTNQN 158
>gi|154272996|ref|XP_001537350.1| GTP-binding protein SAS1 [Ajellomyces capsulatus NAm1]
gi|150415862|gb|EDN11206.1| GTP-binding protein SAS1 [Ajellomyces capsulatus NAm1]
gi|225555103|gb|EEH03396.1| GTP-binding protein SAS1 [Ajellomyces capsulatus G186AR]
Length = 205
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + +S + L+ NK D E +R VT E+ KLA
Sbjct: 86 ILLVYDVTDERSFNNIRTWFS--NVEQHASEGVHKMLIGNKCDWEEKRAVTTEQGQKLAD 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|123392739|ref|XP_001300294.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736296|gb|AAX97477.1| small Rab GTPase RabF2 [Trichomonas vaginalis]
gi|121881309|gb|EAX87364.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 193
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
++ I ++DIT SF W++ +R S + LV NK D+E RVV + +
Sbjct: 80 ARVAIVVFDITDANSFSKAKQWINELKSSRGDSIS--LVLVGNKSDLEFIRVVQMSEAKQ 137
Query: 89 LAQSLHLHSFAVSARTGDN 107
A+ L + F SA+TG N
Sbjct: 138 YAKLLDIPYFETSAKTGVN 156
>gi|325092195|gb|EGC45505.1| GTP-binding protein [Ajellomyces capsulatus H88]
Length = 205
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + +S + L+ NK D E +R VT E+ KLA
Sbjct: 86 ILLVYDVTDERSFNNIRTWFS--NVEQHASEGVHKMLIGNKCDWEEKRAVTTEQGQKLAD 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|71651576|ref|XP_814463.1| small GTP-binding protein RAB6 [Trypanosoma cruzi strain CL Brener]
gi|70879437|gb|EAN92612.1| small GTP-binding protein RAB6, putative [Trypanosoma cruzi]
Length = 268
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
S G IV+ YDITS SF W+D R S + LV NK D + +RVV+ E
Sbjct: 107 SSGTIVV--YDITSRASFLGTFKWIDEVRAERGDSVVIF--LVGNKLDAQEKRVVSTEEA 162
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
K A+ +L VSA+ G N
Sbjct: 163 QKKAEEYNLVFMEVSAKQGKN 183
>gi|197945448|gb|ACH80202.1| GTP-binding protein RAB2-like protein [Paramecium primaurelia]
gi|197945470|gb|ACH80213.1| GTP-binding protein RAB2-like protein [Paramecium triaurelia]
gi|197945490|gb|ACH80223.1| GTP-binding protein RAB2-like protein [Paramecium pentaurelia]
gi|197945492|gb|ACH80224.1| GTP-binding protein RAB2-like protein [Paramecium pentaurelia]
gi|197945494|gb|ACH80225.1| GTP-binding protein RAB2-like protein [Paramecium pentaurelia]
gi|197945496|gb|ACH80226.1| GTP-binding protein RAB2-like protein [Paramecium pentaurelia]
gi|197945520|gb|ACH80238.1| GTP-binding protein RAB2-like protein [Paramecium novaurelia]
Length = 107
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
S G I++F D+T+ QSF + W + + + + +V NK D+E +R V E
Sbjct: 1 SIGGILVF--DVTNRQSFEDVQKWHN--EIQGYACDKIEMVIVGNKIDLEERREVKTEEA 56
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
K AQ F SA+TG+N
Sbjct: 57 KKFAQKFGFDYFETSAKTGEN 77
>gi|118347150|ref|XP_001007052.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila]
gi|89288819|gb|EAR86807.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila SB210]
Length = 193
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 3 EVKMLNLHNDNYEIQLKVVLLGDPSCGK---------IVIFMYDITSGQSFHSIPTWVDL 53
+ ++L L N EI+ + L + + K I++ +YD+T+ SF +I +
Sbjct: 64 DCQVLRLKKGNVEIKFQFWDLNELTREKTLKYYRQTSILMIIYDVTNRNSFTNIKNYYKD 123
Query: 54 FHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGD 106
F + + + +ALV NK D+ R+V+ LA+SL + F VSA TGD
Sbjct: 124 FV--EQENQQSIIALVGNKKDLNESRLVSFFEGQNLAKSLGVEFFEVSAFTGD 174
>gi|27807425|ref|NP_777163.1| ras-related protein Rab-27B [Bos taurus]
gi|75073134|sp|Q8HZJ5.3|RB27B_BOVIN RecName: Full=Ras-related protein Rab-27B
gi|24459171|gb|AAG45503.1| RAB27B [Bos taurus]
gi|296473662|tpg|DAA15777.1| TPA: ras-related protein Rab-27B [Bos taurus]
gi|440902699|gb|ELR53457.1| Ras-related protein Rab-27B [Bos grunniens mutus]
Length = 218
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YSIPYFETSAATGQN 169
>gi|348513460|ref|XP_003444260.1| PREDICTED: ras-related protein Rab-6B-like [Oreochromis niloticus]
Length = 208
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNVNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>gi|145513036|ref|XP_001442429.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409782|emb|CAK75032.1| unnamed protein product [Paramecium tetraurelia]
Length = 222
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT+ SFH++ W++ + + + L NK D+E +R VT E + AQS
Sbjct: 84 LLVYDITNKNSFHNLQRWME--EIKNNGNANMVIVLCGNKIDLESERAVTYEEGWQYAQS 141
Query: 93 LHLHSFAVSARTGDN 107
L +SA+ G N
Sbjct: 142 QSLIFLEISAKQGIN 156
>gi|302755370|ref|XP_002961109.1| rab family GTPase [Selaginella moellendorffii]
gi|300172048|gb|EFJ38648.1| rab family GTPase [Selaginella moellendorffii]
Length = 221
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM-EHQRVVTLERHAKLA 90
+I +YD+T SF++I WV ++ + +S LV NK DM E +R VT + LA
Sbjct: 92 IILVYDVTDESSFNNIRNWVK--NIEQNASENVSRVLVGNKADMDESKRAVTTAQGQALA 149
Query: 91 QSLHLHSFAVSARTGDN 107
+ F SA+TG N
Sbjct: 150 NEYGIRFFETSAKTGQN 166
>gi|291397906|ref|XP_002715524.1| PREDICTED: RAB13, member RAS oncogene family [Oryctolagus
cuniculus]
Length = 203
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLAQ
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVRKEQATKLAQ 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSVN 157
>gi|1370144|emb|CAA98178.1| RAB11B [Lotus japonicus]
Length = 242
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT QSF + WV+ L + + + L+ NKGD+ QRVV E + A+
Sbjct: 104 MLVYDITKRQSFDHVARWVE--ELRAHADSSIVIMLIGNKGDLVDQRVVLSEDAVEFAEE 161
Query: 93 LHLHSFAVSARTGDN 107
L SA TG+N
Sbjct: 162 QGLFFSETSALTGEN 176
>gi|47225306|emb|CAG09806.1| unnamed protein product [Tetraodon nigroviridis]
Length = 237
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF W+D R S + LV NK D+ +R +T E + A
Sbjct: 85 IAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITTEEGEQRA 142
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 143 KELNVMFIETSAKTGYN 159
>gi|410924594|ref|XP_003975766.1| PREDICTED: ras-related protein Rab-3A-like [Takifugu rubripes]
Length = 219
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ SF+++ W + S V LV NK DME +RVV +R +L+
Sbjct: 98 ILMYDITNEDSFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVASQRGQQLSDQ 155
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 156 LGFEFFETSAK 166
>gi|396081874|gb|AFN83488.1| Rab5-like GTPase [Encephalitozoon romaleae SJ-2008]
Length = 197
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
++ + YDITS +SF + WV+ L+ + L+ NK D+E R V ++ +
Sbjct: 85 AQVALIAYDITSMESFETAKRWVE--ELSFEKPKEFIKVLIGNKSDLESDRKVEYQKGKE 142
Query: 89 LAQSLHLHSFAVSARTGDN 107
A S +L F SA+TG N
Sbjct: 143 YADSQNLLFFESSAKTGKN 161
>gi|393910638|gb|EJD75978.1| Ras-like protein [Loa loa]
Length = 207
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 86 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSTEEGERKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 144 KELNVMFIETSAKAGYN 160
>gi|384493318|gb|EIE83809.1| GTP-binding protein Ryh1 [Rhizopus delemar RA 99-880]
Length = 203
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDITS SF + W+D R T + LV NK D+ +R VT+E K A
Sbjct: 82 VCVVVYDITSRSSFLNTSKWIDDVRAER--GTDVIIVLVGNKTDLNDKRQVTVEEGEKKA 139
Query: 91 QSLHLHSFAVSARTGDN 107
+ ++ SA+ G N
Sbjct: 140 KDYNIMFIETSAKAGYN 156
>gi|296222700|ref|XP_002757314.1| PREDICTED: ras-related protein Rab-27B isoform 2 [Callithrix
jacchus]
Length = 218
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YSIPYFETSAATGQN 169
>gi|167387722|ref|XP_001738278.1| small GTPase RAB [Entamoeba dispar SAW760]
gi|165898567|gb|EDR25400.1| small GTPase RAB, putative [Entamoeba dispar SAW760]
Length = 202
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 31 IVIFMYDITSGQSFHSIPTW-VDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
+ + YDITS SF S+ W DL + +S+ VA+V NK D+E RVV
Sbjct: 82 VALICYDITSRSSFESLEGWYTDLMKV---ASSDISVAIVGNKTDLESTRVVQTTEGQSF 138
Query: 90 AQSLHLHSFAVSARTGDN 107
A F VSA+TG N
Sbjct: 139 ADQHSALFFEVSAKTGQN 156
>gi|62543511|ref|NP_001015012.1| ras-related protein Rab-30 [Rattus norvegicus]
gi|60552105|gb|AAH91182.1| RAB30, member RAS oncogene family [Rattus norvegicus]
Length = 175
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 57 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 114
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 115 AQDMYYLETSAKESDN 130
>gi|5729997|ref|NP_004154.2| ras-related protein Rab-27B [Homo sapiens]
gi|426386031|ref|XP_004059498.1| PREDICTED: ras-related protein Rab-27B [Gorilla gorilla gorilla]
gi|14917027|sp|O00194.4|RB27B_HUMAN RecName: Full=Ras-related protein Rab-27B; AltName: Full=C25KG
gi|12963391|gb|AAK11243.1|AF329499_1 RAS-related protein RAB27B [Homo sapiens]
gi|20379084|gb|AAM21102.1|AF498954_1 small GTP binding protein RAB27B [Homo sapiens]
gi|5107835|gb|AAC51194.2| small GTP-binding protein Rab27b [Homo sapiens]
gi|20071592|gb|AAH27474.1| RAB27B, member RAS oncogene family [Homo sapiens]
gi|119583414|gb|EAW63010.1| RAB27B, member RAS oncogene family [Homo sapiens]
gi|123983230|gb|ABM83356.1| RAB27B, member RAS oncogene family [synthetic construct]
gi|157928046|gb|ABW03319.1| RAB27B, member RAS oncogene family [synthetic construct]
gi|189054287|dbj|BAG36807.1| unnamed protein product [Homo sapiens]
gi|261860148|dbj|BAI46596.1| RAB27B, member RAS oncogene family [synthetic construct]
Length = 218
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|357625222|gb|EHJ75731.1| ras-related GTP-binding protein 4b [Danaus plexippus]
Length = 214
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVAL-VANKGDMEHQRVVTLERHAKLA 90
+ +YD+TS SF+++ W+ R ++P V L V NK D+E R VT ++ A
Sbjct: 84 ALLVYDVTSRDSFNALSNWL---RDARTLASPNIVILLVGNKKDLEGSREVTFTEASQFA 140
Query: 91 QSLHLHSFAVSARTGDN 107
Q L SARTG+N
Sbjct: 141 QENELMFLETSARTGEN 157
>gi|340500026|gb|EGR26932.1| ras oncogene family protein, putative [Ichthyophthirius
multifiliis]
Length = 227
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + YDIT+ SF +I WV+ R + LV NK DM+ +R + + + A
Sbjct: 90 VAVICYDITNKSSFENITKWVEDVRAER--GQEVIICLVGNKTDMQDKRAIQQQEAQQKA 147
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + F VSA +GDN
Sbjct: 148 KELDVKFFEVSALSGDN 164
>gi|145544282|ref|XP_001457826.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833814|emb|CAI39366.1| rab_A31 [Paramecium tetraurelia]
gi|124425644|emb|CAK90429.1| unnamed protein product [Paramecium tetraurelia]
Length = 218
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 20/121 (16%)
Query: 32 VIFMYDITSGQSFHSIPTW----VDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
V+ ++DIT+ QSFH+I W +D H + +V NK D+E +R V+ +
Sbjct: 83 VLLVFDITNRQSFHNIVRWYNEILDCAH------ESVDIVIVGNKIDLESERQVSADEGK 136
Query: 88 KLAQSLHLHSFAVSARTG---DNCW--VNTRTPEINPLKYLQSNNEYNFLSMVGFEAGTF 142
+ A+ +H SA+TG D + + R + K + NNE +G + GTF
Sbjct: 137 QFAEQYRIHYIETSAKTGQFVDQVFQQMAMRIHDKIENKLIDQNNE-----NLGIKLGTF 191
Query: 143 Y 143
Y
Sbjct: 192 Y 192
>gi|146386543|pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
gi|146386544|pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P + L+ NK D+ QR V + +LA+
Sbjct: 98 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVNERQARELAEK 156
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 157 YGIPYFETSAATGQN 171
>gi|432108419|gb|ELK33169.1| Ras-related protein Rab-6B [Myotis davidii]
Length = 207
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 82 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 139
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 140 KELSVMFIETSAKTGYN 156
>gi|109122258|ref|XP_001083017.1| PREDICTED: ras-related protein Rab-27B isoform 1 [Macaca mulatta]
gi|109122260|ref|XP_001083132.1| PREDICTED: ras-related protein Rab-27B isoform 2 [Macaca mulatta]
gi|402903166|ref|XP_003914449.1| PREDICTED: ras-related protein Rab-27B [Papio anubis]
gi|355701958|gb|EHH29311.1| C25KG [Macaca mulatta]
gi|355755046|gb|EHH58913.1| C25KG [Macaca fascicularis]
Length = 218
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|432853318|ref|XP_004067648.1| PREDICTED: ras-related protein Rab-6B-like isoform 2 [Oryzias
latipes]
Length = 215
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 95 VAVVVYDITNVNSFQQTAKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 152
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 153 KELSVMFIETSAKTGYN 169
>gi|77681452|ref|NP_001029351.1| ras-related protein Rab-6B [Danio rerio]
gi|71682167|gb|AAI00012.1| RAB6B, member RAS oncogene family [Danio rerio]
Length = 215
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 95 VAVVVYDITNVNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 152
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 153 KELSVMFIETSAKTGYN 169
>gi|126305656|ref|XP_001362429.1| PREDICTED: ras-related protein Rab-3B-like [Monodelphis domestica]
Length = 220
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDI + +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 100 ILMYDIANEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEDERVVPTEKGKFLAEQ 157
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 158 LGFDFFEASAK 168
>gi|344240431|gb|EGV96534.1| Ras-related protein Rab-30 [Cricetulus griseus]
Length = 201
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 83 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 140
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 141 AQDMYYLETSAKESDN 156
>gi|154147666|ref|NP_001093746.1| RAB3B, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|134023761|gb|AAI35349.1| rab3b protein [Xenopus (Silurana) tropicalis]
Length = 217
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDITS S++++ W + S V LV NK DME +RV+ E+ LA
Sbjct: 99 ILMYDITSESSYNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVIAPEKGKHLADQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|300120173|emb|CBK19727.2| unnamed protein product [Blastocystis hominis]
Length = 210
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T SF SI +W++ +++ + + L+ NK D+E QR V+ E KLA+
Sbjct: 87 ILLVYDVTDRNSFESISSWME--QISQHADSSVNKILIGNKCDLEAQRAVSTEEGRKLAE 144
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+T N
Sbjct: 145 RFGIPFAETSAQTNQN 160
>gi|432853316|ref|XP_004067647.1| PREDICTED: ras-related protein Rab-6B-like isoform 1 [Oryzias
latipes]
Length = 208
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNVNSFQQTAKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>gi|12856302|dbj|BAB30625.1| unnamed protein product [Mus musculus]
Length = 203
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>gi|71404522|ref|XP_804960.1| small GTP-binding protein RAB6 [Trypanosoma cruzi strain CL Brener]
gi|70868178|gb|EAN83109.1| small GTP-binding protein RAB6, putative [Trypanosoma cruzi]
Length = 181
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I +YDITS SF W+D R S + LV NK D + +RVV+ E K A+
Sbjct: 19 IVVYDITSRASFLGTFKWIDEVRAERGDSVVIF--LVGNKLDAQEKRVVSTEEAQKKAEE 76
Query: 93 LHLHSFAVSARTGDN 107
+L VSA+ G N
Sbjct: 77 YNLVFMEVSAKQGKN 91
>gi|324517810|gb|ADY46924.1| Ras-related protein Rab-27B [Ascaris suum]
Length = 216
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++DIT+ QSF +I W+ ++ TP + + NK D+E++R V+ R +LA
Sbjct: 93 ILIFDITNEQSFLNIRDWLSQLKVHAYCETPD-IIICGNKADLENRRQVSTARAKQLADQ 151
Query: 93 LHLHSFAVSARTGDN 107
L L F SA T N
Sbjct: 152 LGLPYFETSACTSTN 166
>gi|395511571|ref|XP_003760031.1| PREDICTED: ras-related protein Rab-27B [Sarcophilus harrisii]
Length = 218
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLSDQREVNERQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|354470906|ref|XP_003497685.1| PREDICTED: ras-related protein Rab-6B-like, partial [Cricetulus
griseus]
Length = 165
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 45 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 102
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 103 KELSVMFIETSAKTGYN 119
>gi|339522341|gb|AEJ84335.1| RAB30 [Capra hircus]
Length = 203
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>gi|307949535|gb|ADN96603.1| Rab GTPase 6 [Euplotes octocarinatus]
Length = 220
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I YDITS Q+F + TWVD R + + +V NK D+ QR V E KLA
Sbjct: 95 AIVCYDITSKQTFEHVKTWVDDARNIRGDNVS--IIIVGNKIDLAEQREVYTEEGKKLAD 152
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+ G N
Sbjct: 153 ELGVSFIEASAKAGIN 168
>gi|21361418|ref|NP_055303.2| ras-related protein Rab-30 [Homo sapiens]
gi|31560778|ref|NP_083770.2| ras-related protein Rab-30 [Mus musculus]
gi|115495465|ref|NP_001069697.1| ras-related protein Rab-30 [Bos taurus]
gi|386780907|ref|NP_001248052.1| ras-related protein Rab-30 [Macaca mulatta]
gi|57102328|ref|XP_533993.1| PREDICTED: ras-related protein Rab-30 [Canis lupus familiaris]
gi|114639563|ref|XP_001175176.1| PREDICTED: ras-related protein Rab-30 isoform 7 [Pan troglodytes]
gi|114639565|ref|XP_001175173.1| PREDICTED: ras-related protein Rab-30 isoform 5 [Pan troglodytes]
gi|114639567|ref|XP_001175175.1| PREDICTED: ras-related protein Rab-30 isoform 6 [Pan troglodytes]
gi|114639569|ref|XP_001175170.1| PREDICTED: ras-related protein Rab-30 isoform 3 [Pan troglodytes]
gi|114639571|ref|XP_001175166.1| PREDICTED: ras-related protein Rab-30 isoform 2 [Pan troglodytes]
gi|149719267|ref|XP_001492126.1| PREDICTED: ras-related protein Rab-30-like [Equus caballus]
gi|291384169|ref|XP_002708711.1| PREDICTED: RAB30, member RAS oncogene family [Oryctolagus
cuniculus]
gi|296216937|ref|XP_002754790.1| PREDICTED: ras-related protein Rab-30-like isoform 1 [Callithrix
jacchus]
gi|296216939|ref|XP_002754791.1| PREDICTED: ras-related protein Rab-30-like isoform 2 [Callithrix
jacchus]
gi|296216941|ref|XP_002754792.1| PREDICTED: ras-related protein Rab-30-like isoform 3 [Callithrix
jacchus]
gi|297689849|ref|XP_002822348.1| PREDICTED: ras-related protein Rab-30 isoform 2 [Pongo abelii]
gi|297689851|ref|XP_002822349.1| PREDICTED: ras-related protein Rab-30 isoform 3 [Pongo abelii]
gi|297689853|ref|XP_002822350.1| PREDICTED: ras-related protein Rab-30 isoform 4 [Pongo abelii]
gi|301780042|ref|XP_002925436.1| PREDICTED: ras-related protein Rab-30-like [Ailuropoda melanoleuca]
gi|332211163|ref|XP_003254688.1| PREDICTED: ras-related protein Rab-30 isoform 1 [Nomascus
leucogenys]
gi|332211165|ref|XP_003254689.1| PREDICTED: ras-related protein Rab-30 isoform 2 [Nomascus
leucogenys]
gi|332211167|ref|XP_003254690.1| PREDICTED: ras-related protein Rab-30 isoform 3 [Nomascus
leucogenys]
gi|332211169|ref|XP_003254691.1| PREDICTED: ras-related protein Rab-30 isoform 4 [Nomascus
leucogenys]
gi|348565559|ref|XP_003468570.1| PREDICTED: ras-related protein Rab-30-like [Cavia porcellus]
gi|354489829|ref|XP_003507063.1| PREDICTED: ras-related protein Rab-30-like [Cricetulus griseus]
gi|395743310|ref|XP_003777901.1| PREDICTED: ras-related protein Rab-30 [Pongo abelii]
gi|395814755|ref|XP_003780907.1| PREDICTED: ras-related protein Rab-30 isoform 1 [Otolemur
garnettii]
gi|395814757|ref|XP_003780908.1| PREDICTED: ras-related protein Rab-30 isoform 2 [Otolemur
garnettii]
gi|397502808|ref|XP_003822035.1| PREDICTED: ras-related protein Rab-30 isoform 1 [Pan paniscus]
gi|397502810|ref|XP_003822036.1| PREDICTED: ras-related protein Rab-30 isoform 2 [Pan paniscus]
gi|397502812|ref|XP_003822037.1| PREDICTED: ras-related protein Rab-30 isoform 3 [Pan paniscus]
gi|397502814|ref|XP_003822038.1| PREDICTED: ras-related protein Rab-30 isoform 4 [Pan paniscus]
gi|397502816|ref|XP_003822039.1| PREDICTED: ras-related protein Rab-30 isoform 5 [Pan paniscus]
gi|402894802|ref|XP_003910534.1| PREDICTED: ras-related protein Rab-30 [Papio anubis]
gi|403287762|ref|XP_003935099.1| PREDICTED: ras-related protein Rab-30 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403287764|ref|XP_003935100.1| PREDICTED: ras-related protein Rab-30 isoform 2 [Saimiri
boliviensis boliviensis]
gi|403287766|ref|XP_003935101.1| PREDICTED: ras-related protein Rab-30 isoform 3 [Saimiri
boliviensis boliviensis]
gi|410972563|ref|XP_003992728.1| PREDICTED: ras-related protein Rab-30 [Felis catus]
gi|426251519|ref|XP_004019469.1| PREDICTED: ras-related protein Rab-30 isoform 1 [Ovis aries]
gi|426251521|ref|XP_004019470.1| PREDICTED: ras-related protein Rab-30 isoform 2 [Ovis aries]
gi|426369956|ref|XP_004051946.1| PREDICTED: ras-related protein Rab-30 isoform 1 [Gorilla gorilla
gorilla]
gi|426369958|ref|XP_004051947.1| PREDICTED: ras-related protein Rab-30 isoform 2 [Gorilla gorilla
gorilla]
gi|426369960|ref|XP_004051948.1| PREDICTED: ras-related protein Rab-30 isoform 3 [Gorilla gorilla
gorilla]
gi|426369962|ref|XP_004051949.1| PREDICTED: ras-related protein Rab-30 isoform 4 [Gorilla gorilla
gorilla]
gi|426369964|ref|XP_004051950.1| PREDICTED: ras-related protein Rab-30 isoform 5 [Gorilla gorilla
gorilla]
gi|441645341|ref|XP_004090651.1| PREDICTED: ras-related protein Rab-30 [Nomascus leucogenys]
gi|38258937|sp|Q15771.2|RAB30_HUMAN RecName: Full=Ras-related protein Rab-30; Flags: Precursor
gi|68652043|sp|Q923S9.1|RAB30_MOUSE RecName: Full=Ras-related protein Rab-30; Flags: Precursor
gi|116255980|sp|Q17QB7.1|RAB30_BOVIN RecName: Full=Ras-related protein Rab-30; Flags: Precursor
gi|15277920|gb|AAK94019.1|AF399756_1 RAB30 [Mus musculus]
gi|20379088|gb|AAM21104.1|AF498956_1 small GTP binding protein RAB30 [Homo sapiens]
gi|15559714|gb|AAH14213.1| RAB30, member RAS oncogene family [Homo sapiens]
gi|17028460|gb|AAH17550.1| RAB30, member RAS oncogene family [Mus musculus]
gi|49457208|emb|CAG46903.1| RAB30 [Homo sapiens]
gi|60814713|gb|AAX36314.1| RAB30 member RAS oncogene family [synthetic construct]
gi|74209184|dbj|BAE24976.1| unnamed protein product [Mus musculus]
gi|109659234|gb|AAI18449.1| RAB30, member RAS oncogene family [Bos taurus]
gi|112293021|dbj|BAF02888.1| Rab30 [Mus musculus]
gi|119595484|gb|EAW75078.1| RAB30, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595485|gb|EAW75079.1| RAB30, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595486|gb|EAW75080.1| RAB30, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595487|gb|EAW75081.1| RAB30, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|123984423|gb|ABM83557.1| RAB30, member RAS oncogene family [synthetic construct]
gi|123998391|gb|ABM86797.1| RAB30, member RAS oncogene family [synthetic construct]
gi|148674775|gb|EDL06722.1| RAB30, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|148674776|gb|EDL06723.1| RAB30, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|149068963|gb|EDM18515.1| RAB30, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
gi|149068964|gb|EDM18516.1| RAB30, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
gi|157928438|gb|ABW03515.1| RAB30, member RAS oncogene family [synthetic construct]
gi|158256188|dbj|BAF84065.1| unnamed protein product [Homo sapiens]
gi|189065406|dbj|BAG35245.1| unnamed protein product [Homo sapiens]
gi|261860434|dbj|BAI46739.1| RAB30, member RAS oncogene family [synthetic construct]
gi|281339635|gb|EFB15219.1| hypothetical protein PANDA_014945 [Ailuropoda melanoleuca]
gi|296471922|tpg|DAA14037.1| TPA: RAB30, member RAS oncogene family [Bos taurus]
gi|335773338|gb|AEH58359.1| Ras-related protein Rab-30-like protein [Equus caballus]
gi|351696042|gb|EHA98960.1| Ras-related protein Rab-30 [Heterocephalus glaber]
gi|355566910|gb|EHH23289.1| hypothetical protein EGK_06727 [Macaca mulatta]
gi|355752502|gb|EHH56622.1| hypothetical protein EGM_06073 [Macaca fascicularis]
gi|380811820|gb|AFE77785.1| ras-related protein Rab-30 [Macaca mulatta]
gi|384946490|gb|AFI36850.1| ras-related protein Rab-30 [Macaca mulatta]
gi|410206854|gb|JAA00646.1| RAB30, member RAS oncogene family [Pan troglodytes]
gi|410254834|gb|JAA15384.1| RAB30, member RAS oncogene family [Pan troglodytes]
gi|410290492|gb|JAA23846.1| RAB30, member RAS oncogene family [Pan troglodytes]
gi|410329963|gb|JAA33928.1| RAB30, member RAS oncogene family [Pan troglodytes]
gi|417397027|gb|JAA45547.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
gi|431838480|gb|ELK00412.1| Ras-related protein Rab-30 [Pteropus alecto]
gi|440906949|gb|ELR57158.1| Ras-related protein Rab-30 [Bos grunniens mutus]
Length = 203
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>gi|340370332|ref|XP_003383700.1| PREDICTED: ras-related protein Rab-6A-like [Amphimedon
queenslandica]
Length = 210
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF + W++ R T + LV NK D++ +R V+++ + A
Sbjct: 88 VAVVVYDITNSNSFQQVNKWIEDVRAER--GTDVIIMLVGNKTDLQDKRQVSMDEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
Q L + SA+ G N
Sbjct: 146 QELGVMFIETSAKAGYN 162
>gi|334327772|ref|XP_001377113.2| PREDICTED: ras-related protein Rab-30-like [Monodelphis domestica]
gi|395521092|ref|XP_003764654.1| PREDICTED: ras-related protein Rab-30 [Sarcophilus harrisii]
Length = 203
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>gi|444728498|gb|ELW68955.1| Ras-related protein Rab-30 [Tupaia chinensis]
Length = 263
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 145 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 202
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 203 AQDMYYLETSAKESDN 218
>gi|157817539|ref|NP_001102245.1| ras-related protein Rab-6B [Rattus norvegicus]
gi|194221614|ref|XP_001496020.2| PREDICTED: ras-related protein Rab-6B-like [Equus caballus]
gi|345789199|ref|XP_853481.2| PREDICTED: ras-related protein Rab-6B [Canis lupus familiaris]
gi|149018752|gb|EDL77393.1| RAB6B, member RAS oncogene family (predicted) [Rattus norvegicus]
Length = 175
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 55 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 112
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 113 KELSVMFIETSAKTGYN 129
>gi|56756264|gb|AAW26307.1| SJCHGC09085 protein [Schistosoma japonicum]
Length = 199
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ + +YD+T+ SF +WV+ LN+ ++T +AL NK D+E QRVV+ E +
Sbjct: 82 AQAAVVVYDVTNKDSFVRAKSWVN--ELNKNANTAKVIALAGNKVDLEAQRVVSHEEAQE 139
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 140 YANQNGLLFMETSAKTATN 158
>gi|16758202|ref|NP_445911.1| ras-related protein Rab-27B [Rattus norvegicus]
gi|14916639|sp|Q99P74.3|RB27B_RAT RecName: Full=Ras-related protein Rab-27B
gi|12240246|gb|AAG49587.1|AF325693_1 small GTP binding protein Rab27B [Rattus norvegicus]
gi|149064572|gb|EDM14775.1| rCG46618, isoform CRA_a [Rattus norvegicus]
gi|149064573|gb|EDM14776.1| rCG46618, isoform CRA_a [Rattus norvegicus]
Length = 218
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLLDQREVNERQARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|432853320|ref|XP_004067649.1| PREDICTED: ras-related protein Rab-6B-like isoform 3 [Oryzias
latipes]
Length = 215
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 95 VAVVVYDITNVNSFQQTAKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 152
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 153 KELSVMFIETSAKTGYN 169
>gi|432102772|gb|ELK30248.1| Ras-related protein Rab-30 [Myotis davidii]
Length = 203
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>gi|327269229|ref|XP_003219397.1| PREDICTED: ras-related protein Rab-30-like [Anolis carolinensis]
Length = 203
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLADKREVSQQRAEEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>gi|1457956|gb|AAC50774.1| Rab30 [Homo sapiens]
Length = 203
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>gi|254572922|ref|XP_002493570.1| GTPase, Ras-like GTP binding protein involved in the secretory
pathway [Komagataella pastoris GS115]
gi|238033369|emb|CAY71391.1| GTPase, Ras-like GTP binding protein involved in the secretory
pathway [Komagataella pastoris GS115]
Length = 203
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I +YD TS SF S+ W D R + + LVANK D+ QRV++ E K A
Sbjct: 80 VAIIVYDTTSKSSFQSVDKWCDDVRNERGENV--IICLVANKADLADQRVISTEDGEKKA 137
Query: 91 QSLHLHSF 98
L + F
Sbjct: 138 TGLKVDLF 145
>gi|440297183|gb|ELP89899.1| hypothetical protein EIN_472770 [Entamoeba invadens IP1]
Length = 234
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I +Y IT+ SF+ + +++ + +++SS + L NK DME R+VT + KLA
Sbjct: 79 IVVYSITNSSSFYQVTHFIETIYRIFDKESSERIPMVLCGNKCDMECNRIVTTKEGRKLA 138
Query: 91 QSLHLHSFAVSARTGDNC---------WVNTRTPEINPLKYLQSNNEYNFLSMVGFEAGT 141
+ L++ + VSA+ N VN ++N K N+Y S+
Sbjct: 139 EELNILFYEVSAKNNINIKEVVNDLLREVNKHKNDVNTTKLHCDTNKYKNKSLNNI---I 195
Query: 142 FYMAVKR 148
FY+ KR
Sbjct: 196 FYILFKR 202
>gi|341900805|gb|EGT56740.1| CBN-RAB-6.1 protein [Caenorhabditis brenneri]
Length = 205
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH WVD + + + LV NK D+ +R V+ E K A
Sbjct: 86 VAVVVYDITNANSFHQTTKWVD--DVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 144 RDLNVMFIETSAKAGYN 160
>gi|149691929|ref|XP_001501079.1| PREDICTED: ras-related protein Rab-27A-like [Equus caballus]
Length = 221
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E +LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGAN 169
>gi|355560026|gb|EHH16754.1| hypothetical protein EGK_12093, partial [Macaca mulatta]
gi|355747048|gb|EHH51662.1| hypothetical protein EGM_11085, partial [Macaca fascicularis]
Length = 186
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 66 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 123
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 124 KELSVMFIETSAKTGYN 140
>gi|268574940|ref|XP_002642449.1| C. briggsae CBR-RAB-6.1 protein [Caenorhabditis briggsae]
Length = 205
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH WVD + + + LV NK D+ +R V+ E K A
Sbjct: 86 VAVVVYDITNANSFHQTTKWVD--DVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 144 RDLNVMFIETSAKAGYN 160
>gi|335292102|ref|XP_001927611.3| PREDICTED: ras-related protein Rab-44 [Sus scrofa]
Length = 738
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYD+TS +SF I W+D L S + L+ NK D E +R V+ E +LAQ
Sbjct: 626 VVLMYDVTSQESFMHIRYWLDC--LQETVSDGVVILLLGNKTDCEEERQVSTEAGQQLAQ 683
Query: 92 SLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSNNE 128
L + SA G N P +N + L+ E
Sbjct: 684 ELGVSFGECSAALGH----NILEPMVNLARALKMQEE 716
>gi|213515204|ref|NP_001133402.1| Ras-related protein Rab-6C [Salmo salar]
gi|209153591|gb|ACI33170.1| Ras-related protein Rab-6C [Salmo salar]
Length = 175
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF W+D R S + LV NK D+ +R +T E + A
Sbjct: 55 IAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITTEEGEQRA 112
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 113 KELNVMFIETSAKTGYN 129
>gi|420274|pir||G42148 GTP-binding protein rab16 - rat
Length = 198
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDI + +SF ++ W L L T V LV NK D+E +RVV+ E +LA
Sbjct: 78 LLMYDIANQESFTAVQDW--LRRLKPIPGTTPQVILVGNKCDLEDERVVSAEDGQRLAGD 135
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 136 LGFEFFEASAK 146
>gi|290980783|ref|XP_002673111.1| rab family small GTPase [Naegleria gruberi]
gi|284086692|gb|EFC40367.1| rab family small GTPase [Naegleria gruberi]
Length = 212
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT ++FH + TW++ R S++ + LV NK D++ +R V+ E K AQ
Sbjct: 82 ALLVYDITRRETFHHLTTWLE--DARRHSNSTMTIMLVGNKCDLDSRRAVSYEEGKKFAQ 139
Query: 92 SLHLHSFAVSARTGDN 107
L SA+ +N
Sbjct: 140 QHDLIFLETSAKNDEN 155
>gi|354495889|ref|XP_003510061.1| PREDICTED: ras-related protein Rab-27B-like [Cricetulus griseus]
Length = 218
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLADQREVNERQARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA +G N
Sbjct: 155 YGIPYFETSAASGQN 169
>gi|308471931|ref|XP_003098195.1| CRE-RAB-6.1 protein [Caenorhabditis remanei]
gi|308269346|gb|EFP13299.1| CRE-RAB-6.1 protein [Caenorhabditis remanei]
Length = 205
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH WVD + + + LV NK D+ +R V+ E K A
Sbjct: 86 VAVVVYDITNANSFHQTTKWVD--DVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 144 RDLNVMFIETSAKAGYN 160
>gi|30424655|ref|NP_776142.1| ras-related protein Rab-6B [Mus musculus]
gi|96975097|ref|NP_057661.3| ras-related protein Rab-6B [Homo sapiens]
gi|155371985|ref|NP_001094599.1| ras-related protein Rab-6B [Bos taurus]
gi|386781658|ref|NP_001248165.1| ras-related protein Rab-6B [Macaca mulatta]
gi|126325809|ref|XP_001364646.1| PREDICTED: ras-related protein Rab-6B-like [Monodelphis domestica]
gi|296228059|ref|XP_002759647.1| PREDICTED: ras-related protein Rab-6B [Callithrix jacchus]
gi|297672009|ref|XP_002814108.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Pongo abelii]
gi|301777392|ref|XP_002924114.1| PREDICTED: ras-related protein Rab-6B-like [Ailuropoda melanoleuca]
gi|311269411|ref|XP_003132476.1| PREDICTED: ras-related protein Rab-6B-like [Sus scrofa]
gi|348582027|ref|XP_003476778.1| PREDICTED: ras-related protein Rab-6B-like [Cavia porcellus]
gi|395519193|ref|XP_003763735.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Sarcophilus
harrisii]
gi|395832821|ref|XP_003789452.1| PREDICTED: ras-related protein Rab-6B [Otolemur garnettii]
gi|397503903|ref|XP_003822554.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Pan paniscus]
gi|402861531|ref|XP_003895143.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Papio anubis]
gi|403265826|ref|XP_003925113.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Saimiri
boliviensis boliviensis]
gi|426218278|ref|XP_004003376.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Ovis aries]
gi|426342170|ref|XP_004036386.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Gorilla gorilla
gorilla]
gi|13633595|sp|Q9NRW1.1|RAB6B_HUMAN RecName: Full=Ras-related protein Rab-6B
gi|47117095|sp|P61294.1|RAB6B_MOUSE RecName: Full=Ras-related protein Rab-6B
gi|229891504|sp|A6QR46.1|RAB6B_BOVIN RecName: Full=Ras-related protein Rab-6B
gi|7385001|gb|AAF61637.1|AF166492_1 small GTPase RAB6B [Homo sapiens]
gi|20379056|gb|AAM21088.1|AF498940_1 small GTP binding protein RAB6B [Homo sapiens]
gi|12803379|gb|AAH02510.1| RAB6B, member RAS oncogene family [Homo sapiens]
gi|26331000|dbj|BAC29230.1| unnamed protein product [Mus musculus]
gi|30583365|gb|AAP35927.1| RAB6B, member RAS oncogene family [Homo sapiens]
gi|38148674|gb|AAH60618.1| RAB6B, member RAS oncogene family [Mus musculus]
gi|60655043|gb|AAX32085.1| RAB6B [synthetic construct]
gi|112292963|dbj|BAF02859.1| Rab6B [Mus musculus]
gi|119599564|gb|EAW79158.1| RAB6B, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119599565|gb|EAW79159.1| RAB6B, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|148689117|gb|EDL21064.1| RAB6B, member RAS oncogene family [Mus musculus]
gi|151557109|gb|AAI50112.1| RAB6B protein [Bos taurus]
gi|168279011|dbj|BAG11385.1| Ras-related protein Rab-6B [synthetic construct]
gi|189065457|dbj|BAG35296.1| unnamed protein product [Homo sapiens]
gi|190690565|gb|ACE87057.1| RAB6B, member RAS oncogene family protein [synthetic construct]
gi|296490967|tpg|DAA33065.1| TPA: ras-related protein Rab-6B [Bos taurus]
gi|380783157|gb|AFE63454.1| ras-related protein Rab-6B [Macaca mulatta]
gi|383408451|gb|AFH27439.1| ras-related protein Rab-6B [Macaca mulatta]
gi|384943778|gb|AFI35494.1| ras-related protein Rab-6B [Macaca mulatta]
gi|410206664|gb|JAA00551.1| RAB6B, member RAS oncogene family [Pan troglodytes]
gi|410261278|gb|JAA18605.1| RAB6B, member RAS oncogene family [Pan troglodytes]
gi|410287730|gb|JAA22465.1| RAB6B, member RAS oncogene family [Pan troglodytes]
gi|410328335|gb|JAA33114.1| RAB6B, member RAS oncogene family [Pan troglodytes]
gi|417397131|gb|JAA45599.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
Length = 208
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>gi|67480359|ref|XP_655529.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56472674|gb|EAL50140.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790136|dbj|BAD82864.1| small GTPase EhRabX16 [Entamoeba histolytica]
gi|449710575|gb|EMD49626.1| small GTPase EhRabX16, putative [Entamoeba histolytica KU27]
Length = 203
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
K I +YDIT +F+S+ W + L S P V ++ NK D+E QR +T + A
Sbjct: 82 AKACIIVYDITKAVTFNSVDKWYN--KLRNIVSDPIPVLIIGNKSDIEQQRDITTDVGAS 139
Query: 89 LAQSLHLHSFAVSARTGDN 107
LA+ L S G N
Sbjct: 140 LARKLGAFFIETSCLNGSN 158
>gi|74834225|emb|CAI44487.1| rab_C59 [Paramecium tetraurelia]
Length = 225
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I ++ +TS SF S+ W N S ++LV N D+E +R V+ E + AQ
Sbjct: 88 IIIVFKLTSRDSFQSVSGWARDIQEN--SDQGVVISLVGNMTDLEAERSVSNEEGKQKAQ 145
Query: 92 SLHLHSFAVSARTG---DNCWVNTR---TPEINPLK 121
++ F SA G D+ ++NT T +INP++
Sbjct: 146 EINSLYFETSAAIGKNIDDIFINTLEKVTKQINPIR 181
>gi|194035009|ref|XP_001925846.1| PREDICTED: ras-related protein Rab-27B-like [Sus scrofa]
Length = 218
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|440895300|gb|ELR47529.1| Ras-related protein Rab-6B [Bos grunniens mutus]
Length = 207
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>gi|432877569|ref|XP_004073164.1| PREDICTED: ras-related protein Rab-6B-like isoform 1 [Oryzias
latipes]
Length = 211
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF W+D R S + LV NK D+ +R +T E + A
Sbjct: 91 IAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITTEEGEQRA 148
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 149 KELNVMFIETSAKTGYN 165
>gi|410921832|ref|XP_003974387.1| PREDICTED: ras-related protein Rab-3A-like [Takifugu rubripes]
Length = 219
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DM+ +RVV+ +R +LA
Sbjct: 98 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMDDERVVSGDRGRQLADH 155
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 156 LGFEFFEASAK 166
>gi|226503741|ref|NP_001151560.1| ras-related protein Rab11D [Zea mays]
gi|194708702|gb|ACF88435.1| unknown [Zea mays]
gi|195647718|gb|ACG43327.1| ras-related protein Rab11D [Zea mays]
gi|414865255|tpg|DAA43812.1| TPA: Ras protein Rab11D [Zea mays]
Length = 217
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT QSF IP W+D L + + LV NK D+E QR V+ E + A+
Sbjct: 87 ALLVYDITRRQSFDHIPRWLD--ELRAHADKNIVIMLVGNKSDLEEQRAVSTEDAKEFAE 144
Query: 92 SLHLHSFAVSARTGDN 107
+L SA N
Sbjct: 145 KENLFFLETSALQATN 160
>gi|380494610|emb|CCF33020.1| Ras-like protein Rab-8A [Colletotrichum higginsianum]
Length = 202
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + ++ L+ NK D E +RVV+ ER +LA
Sbjct: 86 ILLVYDVTDERSFNNIRTW--FANVEQHATEGVNKILIGNKCDWEEKRVVSTERGQQLAD 143
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++ N
Sbjct: 144 ELGIPFLEVSAKSNIN 159
>gi|242036665|ref|XP_002465727.1| hypothetical protein SORBIDRAFT_01g044550 [Sorghum bicolor]
gi|241919581|gb|EER92725.1| hypothetical protein SORBIDRAFT_01g044550 [Sorghum bicolor]
Length = 217
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT QSF IP W+D L + + LV NK D+E QR V+ E + A+
Sbjct: 87 ALLVYDITRRQSFDHIPRWLD--ELRAHADKNIVIMLVGNKSDLEEQRAVSTEDAKEFAE 144
Query: 92 SLHLHSFAVSARTGDN 107
+L SA N
Sbjct: 145 KENLFFLETSALQATN 160
>gi|440293113|gb|ELP86275.1| hypothetical protein EIN_114190 [Entamoeba invadens IP1]
Length = 195
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV--ALVANKGDMEHQRVVTLERH 86
G I +Y I QSF + + D+ H+ S +V L ANK D+E RVV E
Sbjct: 79 GDGFIIVYSIIEQQSFFDVNIYKDVLHVLLGKSQEEHVNACLCANKLDLEEYRVVPTENG 138
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
A LA+ L L + VSA+T N
Sbjct: 139 AALAKELGLIFYEVSAKTNIN 159
>gi|17553774|ref|NP_498993.1| Protein RAB-6.1 [Caenorhabditis elegans]
gi|464527|sp|P34213.1|RAB6A_CAEEL RecName: Full=Ras-related protein Rab-6.1
gi|3877850|emb|CAA77590.1| Protein RAB-6.1 [Caenorhabditis elegans]
Length = 205
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH WVD + + + LV NK D+ +R V+ E K A
Sbjct: 86 VAVVVYDITNANSFHQTTKWVD--DVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 144 RDLNVMFIETSAKAGYN 160
>gi|399163145|gb|AFP33148.1| rab-6.1, partial [Caenorhabditis elegans]
Length = 204
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH WVD + + + LV NK D+ +R V+ E K A
Sbjct: 85 VAVVVYDITNANSFHQTTKWVD--DVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKA 142
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 143 RDLNVMFIETSAKAGYN 159
>gi|344293727|ref|XP_003418572.1| PREDICTED: ras-related protein Rab-30-like [Loxodonta africana]
Length = 205
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 87 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 144
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 145 AQDMYYLETSAKESDN 160
>gi|226529763|ref|NP_001151068.1| ras-related protein Rab11D [Zea mays]
gi|226958362|ref|NP_001152898.1| uncharacterized protein LOC100272235 [Zea mays]
gi|194696242|gb|ACF82205.1| unknown [Zea mays]
gi|195644068|gb|ACG41502.1| ras-related protein Rab11D [Zea mays]
gi|413956768|gb|AFW89417.1| Ras protein Rab11D [Zea mays]
Length = 217
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT QSF IP W+D L + + LV NK D+E QR V+ E + A+
Sbjct: 87 ALLVYDITRRQSFDHIPRWLD--ELRAHADKNIVIMLVGNKSDLEEQRAVSTEDAKEFAE 144
Query: 92 SLHLHSFAVSARTGDN 107
+L SA N
Sbjct: 145 KENLFFLETSALQATN 160
>gi|167386857|ref|XP_001737926.1| ehrabx6d protein [Entamoeba dispar SAW760]
gi|165899065|gb|EDR25761.1| ehrabx6d protein, putative [Entamoeba dispar SAW760]
Length = 231
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+F +DIT ++F+ I W+ + + L+ KGD+ +R V++E A+
Sbjct: 80 VLFCFDITKKETFNCIDMWIQEYEQAQTLKDLAARYLIGCKGDLASKREVSIEDAENYAK 139
Query: 92 SLHLHSFAVSARTGDN 107
S ++ SA+TGDN
Sbjct: 140 SKNMTYLECSAKTGDN 155
>gi|358060564|dbj|GAA93714.1| hypothetical protein E5Q_00360 [Mixia osmundae IAM 14324]
Length = 252
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF S W+D R S + LV NK D+ +R VT E K A
Sbjct: 131 VAVVVYDITNRSSFASTNKWIDDVRAERGSDV--IIVLVGNKTDLNDKRQVTTEEAEKRA 188
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+ G N
Sbjct: 189 KDLGVMFIETSAKAGHN 205
>gi|209735274|gb|ACI68506.1| Ras-related protein Rab-6B [Salmo salar]
Length = 208
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNVNSFQQTSKWIDDVRTGRGSDV--IIMLVGNKTDLGDKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>gi|402222754|gb|EJU02820.1| GTP-binding protein RAB5 [Dacryopinax sp. DJM-731 SS1]
Length = 208
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I +YDIT S +W+ L R++ +AL NK D+ +R V+ E K A
Sbjct: 82 CAICVYDITQSASLEKAKSWIR--ELQRQADPSIVIALCGNKSDLAARRQVSQEEAQKFA 139
Query: 91 QSLHLHSFAVSARTGDNCWVNT-------RTPEINPLK 121
+ L SA+TG+ VN + PE+ PL+
Sbjct: 140 EEEGLMWCETSAKTGEG--VNEIFDRIAHKLPEVAPLQ 175
>gi|291399811|ref|XP_002716636.1| PREDICTED: RAB6B, member RAS oncogene family [Oryctolagus
cuniculus]
Length = 208
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>gi|449498485|ref|XP_004177271.1| PREDICTED: ras-related protein Rab-6A-like [Taeniopygia guttata]
Length = 211
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF W+D R S + LV NK D+ +R +T E + A
Sbjct: 91 IAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITTEEGEQRA 148
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 149 KELNVMFIETSAKTGYN 165
>gi|358248878|ref|NP_001239700.1| uncharacterized protein LOC100787725 [Glycine max]
gi|255639774|gb|ACU20180.1| unknown [Glycine max]
Length = 236
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDI+ QSF + WVD L + + + L+ NKGD+ QRVV E + A+
Sbjct: 101 MLVYDISKRQSFDHVARWVD--ELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAED 158
Query: 93 LHLHSFAVSARTGDN 107
L SA +G+N
Sbjct: 159 QGLFFSETSALSGEN 173
>gi|195999668|ref|XP_002109702.1| hypothetical protein TRIADDRAFT_20540 [Trichoplax adhaerens]
gi|190587826|gb|EDV27868.1| hypothetical protein TRIADDRAFT_20540, partial [Trichoplax
adhaerens]
Length = 190
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T+ +SF ++ +W++ +N + V L+ NK D+ ++V+ E+ KLA+
Sbjct: 75 LLLLYDVTNKKSFENVLSWIE--DINAHAGNDVVVMLLGNKADLTTEKVIKTEQGEKLAK 132
Query: 92 SLHLHSFAVSARTGDN 107
++ SA+TG N
Sbjct: 133 DNNIAFMETSAKTGMN 148
>gi|18410144|ref|NP_567008.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana]
gi|75169988|sp|Q9CB01.1|RABF1_ARATH RecName: Full=Ras-related protein RABF1; Short=AtRABF1; AltName:
Full=Ras-related protein Ara-6; AltName:
Full=Ras-related protein Rab5C; Short=AtRab5C
gi|13160603|dbj|BAB32953.1| Ara6 [Arabidopsis thaliana]
gi|27754459|gb|AAO22677.1| putative Rab family GTP-binding protein (Ara6) [Arabidopsis
thaliana]
gi|28393957|gb|AAO42386.1| putative Rab family GTP-binding protein (Ara6) [Arabidopsis
thaliana]
gi|332645777|gb|AEE79298.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana]
Length = 202
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDITS +SF WV L + S +ALV NK D+ +R V E +LA
Sbjct: 109 VAVIVYDITSPESFKKAQYWVK--ELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELA 166
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA+T DN
Sbjct: 167 EKNGMFFIETSAKTADN 183
>gi|224062432|ref|XP_002197779.1| PREDICTED: ras-related protein Rab-27A isoform 1 [Taeniopygia
guttata]
gi|449471031|ref|XP_004176940.1| PREDICTED: ras-related protein Rab-27A isoform 2 [Taeniopygia
guttata]
Length = 221
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P + L NK D+E QR+V E +LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPD-IVLCGNKSDLEDQRMVKEEDAKELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G+N
Sbjct: 155 YGIPYFETSAANGNN 169
>gi|85544636|pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
gi|85544637|pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 112 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELADK 170
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 171 YGIPYFETSAATGQN 185
>gi|4678309|emb|CAB41100.1| small GTP-binding protein-like (fragment) [Arabidopsis thaliana]
Length = 224
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDITS +SF WV L + S +ALV NK D+ +R V E +LA
Sbjct: 107 VAVIVYDITSPESFKKAQYWVK--ELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELA 164
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA+T DN
Sbjct: 165 EKNGMFFIETSAKTADN 181
>gi|83754993|pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 102 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 159
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 160 AQDMYYLETSAKESDN 175
>gi|310792151|gb|EFQ27678.1| Ras family protein [Glomerella graminicola M1.001]
Length = 202
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + ++ L+ NK D E +RVV+ ER +LA
Sbjct: 86 ILLVYDVTDERSFNNIRTW--FANVEQHATEGVNKILIGNKCDWEEKRVVSTERGQQLAD 143
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++ N
Sbjct: 144 ELGIPFLEVSAKSNIN 159
>gi|289741525|gb|ADD19510.1| Rab protein 6 [Glossina morsitans morsitans]
Length = 208
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 87 VAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 144
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 145 KELNVMFVETSAKAGYN 161
>gi|145490291|ref|XP_001431146.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831437|emb|CAI39305.1| rab_C42 [Paramecium tetraurelia]
gi|124398249|emb|CAK63748.1| unnamed protein product [Paramecium tetraurelia]
Length = 400
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 26 PSCGKI--VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTL 83
P C V F+Y+ITS +F I W++L + +S T L+ NK D+ R V+
Sbjct: 278 PHCNNANSVFFIYNITSKDTFQGIIKWINL--AKKSASRNTINVLIGNKIDLNSSRQVSS 335
Query: 84 ERHAKLAQSLHLHSFAVSAR 103
+LAQ L L + SAR
Sbjct: 336 TEGQQLAQDLKLKFYETSAR 355
>gi|123506780|ref|XP_001329276.1| Ras family protein [Trichomonas vaginalis G3]
gi|62736244|gb|AAX97451.1| small Rab GTPase Rab6a [Trichomonas vaginalis]
gi|121912229|gb|EAY17053.1| Ras family protein [Trichomonas vaginalis G3]
Length = 202
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT QSF +I TW + + ++ P ++ +V NK D++ +R ++E K A
Sbjct: 84 IAVLVYDITCKQSFDNIQTW---YQMVINNAEPAFI-IVGNKSDLDSERANSIEEGKKFA 139
Query: 91 QSLHLHSFAVSARTGDN 107
++ SA T +N
Sbjct: 140 NQINAKFIETSAITSEN 156
>gi|339717366|pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
gi|339717367|pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 146
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 147 KELNVMFIETSAKAGYNV 164
>gi|307169869|gb|EFN62378.1| Ras-related protein Rab-28 [Camponotus floridanus]
Length = 238
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
I++ +YD+T+ SF + W++ + + P +A+V NK DMEHQR V ++ +
Sbjct: 88 IILLVYDVTNSSSFDILEEWLNQIKNFIDTYDEPPLIAVVGNKCDMEHQRTVKRDKSHRF 147
Query: 90 AQSLHLHSFAVSARTGDN 107
A +SARTG++
Sbjct: 148 AAENGFPYHDMSARTGES 165
>gi|307949525|gb|ADN96598.1| Rab GTPase 2b [Euplotes octocarinatus]
Length = 248
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V YDIT +SF +I W+ + ++ T LV N+ D+E R VT+E+ +
Sbjct: 100 VFLTYDITREESFDNIKKWLKEAKI--QADPDTVFFLVGNQADLEENRAVTIEKAQDFKK 157
Query: 92 SLHLHS-FAVSARTGDNCWVNTRTPEINPLKYLQSNNEYN 130
+ L + F SA++G N V E YL+++N+ +
Sbjct: 158 KMKLDAFFETSAKSGQN--VEKSFIEAAKQLYLKNSNDQD 195
>gi|14475537|emb|CAC41973.1| putative Rab/GTPase [Glomerella lindemuthiana]
Length = 202
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + ++ L+ NK D E +RVV+ ER +LA
Sbjct: 86 ILLVYDVTDERSFNNIRTW--FANVEQHATEGVNKILIGNKCDWEEKRVVSTERGQQLAD 143
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++ N
Sbjct: 144 ELGIPFLEVSAKSNIN 159
>gi|291402970|ref|XP_002717760.1| PREDICTED: Ras-related protein Rab-27A-like [Oryctolagus cuniculus]
Length = 221
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEEQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|126277201|ref|XP_001368456.1| PREDICTED: ras-related protein Rab-27A-like [Monodelphis domestica]
Length = 221
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRV+ E +LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVIKEEEARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|344249535|gb|EGW05639.1| Ras-related protein Rab-6B [Cricetulus griseus]
Length = 140
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 34 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 91
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 92 KELSVMFIETSAKTGYN 108
>gi|198426530|ref|XP_002131139.1| PREDICTED: similar to MGC80943 protein [Ciona intestinalis]
Length = 232
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +D+TS QSF +I W+D + +P + L NK D+E R V+ ER ++ A++
Sbjct: 106 LLFFDLTSEQSFLNIRNWLDQLKQHSYCESPDII-LCGNKCDLEDLRAVSTERASECAEA 164
Query: 93 LHLHSFAVSARTGDN 107
L SA TG N
Sbjct: 165 YGLPYMETSAATGHN 179
>gi|67474604|ref|XP_653051.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|14423577|gb|AAK62471.1|AF389109_1 small GTP-binding protein Rab8 [Entamoeba histolytica]
gi|56469970|gb|EAL47665.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449710651|gb|EMD49688.1| small GTP-binding protein Rab8, putative [Entamoeba histolytica
KU27]
Length = 199
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDITS +SF++I W+ N + LV NK D E +RVVT E ++A
Sbjct: 83 IVLVYDITSRESFNNIEYWMRNIEANADQNVNKI--LVGNKCDAEDKRVVTSEEGQQMAN 140
Query: 92 SLHLHSFAVSARTG---DNCWVN 111
L + SA+ D+C+++
Sbjct: 141 KLGIPFLETSAKNSLKVDDCFIS 163
>gi|431896175|gb|ELK05591.1| Ras-related protein Rab-27B [Pteropus alecto]
Length = 236
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 114 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELADK 172
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 173 YGILYFETSAATGQN 187
>gi|301123057|ref|XP_002909255.1| Rab1 family GTPase, putative [Phytophthora infestans T30-4]
gi|262100017|gb|EEY58069.1| Rab1 family GTPase, putative [Phytophthora infestans T30-4]
Length = 203
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+TS +SF + W++ +NR +S T LV NK D+ +VV+ E A
Sbjct: 84 IIMVYDVTSQESFDHVNDWLN--EVNRYASEGTCKLLVGNKSDISDNKVVSYETAKAFAD 141
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 142 SLSIPFLETSAKNAQN 157
>gi|29841162|gb|AAP06175.1| similar to NM_002868 RAB5B, member RAS oncogene family in Homo
sapiens [Schistosoma japonicum]
Length = 214
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ + +YD+T+ SF +WV+ LN+ ++T +AL NK D+E QRVV+ E +
Sbjct: 82 AQAAVVVYDVTNKDSFVRAKSWVN--ELNKNANTAKVIALAGNKVDLEAQRVVSHEEAQE 139
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 140 YANQNGLLFMETSAKTATN 158
>gi|71663004|ref|XP_818500.1| small GTP-binding protein Rab28 [Trypanosoma cruzi strain CL
Brener]
gi|70883756|gb|EAN96649.1| small GTP-binding protein Rab28, putative [Trypanosoma cruzi]
Length = 229
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVD---LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
V F+YD+T+ SF + W N + P V LV NK D+ + R VT + HAK
Sbjct: 91 VCFVYDVTNPASFKDVEDWRQSLLALQGNEEGRKPLMV-LVGNKTDLPN-RQVTADMHAK 148
Query: 89 LAQSLHLHSFAVSARTGD 106
A + + S +SAR+GD
Sbjct: 149 AASTYDMESILISARSGD 166
>gi|145332843|ref|NP_001078287.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana]
gi|222423401|dbj|BAH19672.1| AT3G54840 [Arabidopsis thaliana]
gi|332645778|gb|AEE79299.1| Ras-related small GTP-binding family protein [Arabidopsis thaliana]
Length = 193
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDITS +SF WV L + S +ALV NK D+ +R V E +LA
Sbjct: 109 VAVIVYDITSPESFKKAQYWVK--ELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELA 166
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA+T DN
Sbjct: 167 EKNGMFFIETSAKTADN 183
>gi|340508346|gb|EGR34065.1| ras small gtpase ric1, putative [Ichthyophthirius multifiliis]
Length = 213
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T QSF ++ +W+ + + + L+ NK D++ +R V+ + +LAQ
Sbjct: 93 IVVVYDVTDKQSFENVKSWMS--EIEKYAQENVNKLLIGNKSDLQEKRQVSFDEGQQLAQ 150
Query: 92 SLHLHSFAVSARTG---DNCW 109
SL + SA+ D+C+
Sbjct: 151 SLGIKFIETSAKNSTNIDSCF 171
>gi|281343000|gb|EFB18584.1| hypothetical protein PANDA_013372 [Ailuropoda melanoleuca]
Length = 123
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 45 VAVVVYDITNLNSFQQTSKWIDDVRTERGS--DVIIMLVGNKTDLADKRQITIEEGEQRA 102
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L + SA+TG N
Sbjct: 103 KELSVMFIETSAKTGYNV 120
>gi|403265828|ref|XP_003925114.1| PREDICTED: ras-related protein Rab-6B isoform 2 [Saimiri
boliviensis boliviensis]
Length = 195
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 75 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 132
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 133 KELSVMFIETSAKTGYN 149
>gi|297672011|ref|XP_002814109.1| PREDICTED: ras-related protein Rab-6B isoform 2 [Pongo abelii]
gi|332818086|ref|XP_001147918.2| PREDICTED: ras-related protein Rab-6B [Pan troglodytes]
gi|397503905|ref|XP_003822555.1| PREDICTED: ras-related protein Rab-6B isoform 2 [Pan paniscus]
gi|402861533|ref|XP_003895144.1| PREDICTED: ras-related protein Rab-6B isoform 2 [Papio anubis]
gi|426342172|ref|XP_004036387.1| PREDICTED: ras-related protein Rab-6B isoform 2 [Gorilla gorilla
gorilla]
gi|221040792|dbj|BAH12073.1| unnamed protein product [Homo sapiens]
Length = 195
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 75 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 132
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 133 KELSVMFIETSAKTGYN 149
>gi|339236385|ref|XP_003379747.1| GTP-binding protein Ryh1 [Trichinella spiralis]
gi|316977574|gb|EFV60659.1| GTP-binding protein Ryh1 [Trichinella spiralis]
Length = 207
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 86 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSSEEGERKA 143
Query: 91 QSLHLHSFAVSARTG 105
+ L++ SA+ G
Sbjct: 144 KELNVMFIETSAKAG 158
>gi|195045379|ref|XP_001991965.1| GH24468 [Drosophila grimshawi]
gi|193892806|gb|EDV91672.1| GH24468 [Drosophila grimshawi]
Length = 234
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+TS +SF I W++ + + P V L NK D+ RVV+ E+ A LAQ
Sbjct: 92 LLIFDLTSQKSFLEISNWLEQLRTHAYTEEPD-VVLCGNKSDLIQLRVVSREQVAALAQR 150
Query: 93 LHLHSFAVSARTGDN 107
HL SA TG N
Sbjct: 151 YHLPYIETSACTGAN 165
>gi|71895797|ref|NP_001025679.1| MGC97787 protein [Xenopus (Silurana) tropicalis]
gi|62530960|gb|AAH93468.1| MGC97787 protein [Xenopus (Silurana) tropicalis]
Length = 201
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +S+ +I W+ N ++ L+ NK DME++R V ER KLA+
Sbjct: 84 IILVYDITDERSYENIQNWMKSIKEN--AAAGVERMLLGNKCDMENKRKVPKERGEKLAK 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSQN 157
>gi|430811133|emb|CCJ31387.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 203
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I +YDIT+ SF + W+D R + +V NK D+ ++R VT E K+A
Sbjct: 85 VAIVVYDITNRTSFINTNRWIDDIKAER--GNDVIIVIVGNKTDLNNKRQVTTEEGEKMA 142
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L SA+TG N
Sbjct: 143 KELKTMFMETSAKTGHNV 160
>gi|344269852|ref|XP_003406761.1| PREDICTED: ras-related protein Rab-27B-like [Loxodonta africana]
Length = 218
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|410977740|ref|XP_003995259.1| PREDICTED: ras-related protein Rab-27B [Felis catus]
Length = 218
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|407038762|gb|EKE39296.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 199
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDITS +SF++I W+ N + LV NK D E +RVVT E ++A
Sbjct: 83 IVLVYDITSRESFNNIEYWMRNIEANADQNVNKI--LVGNKCDAEDKRVVTSEEGQQMAN 140
Query: 92 SLHLHSFAVSARTG---DNCWVN 111
L + SA+ D+C+++
Sbjct: 141 KLGIPFLETSAKNSLKVDDCFIS 163
>gi|387018010|gb|AFJ51123.1| ras-related protein Rab-6A-like [Crotalus adamanteus]
Length = 212
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF W+D R S + LV NK D+ +R +T E + A
Sbjct: 92 IAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITTEEGEQRA 149
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 150 KELSVMFIETSAKTGYN 166
>gi|348505394|ref|XP_003440246.1| PREDICTED: ras-related protein Rab-27B-like [Oreochromis niloticus]
Length = 355
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQ 91
+ M+D+TS QSF ++ W+ N P V LV NK D+ QR V ER AK LA+
Sbjct: 234 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LVGNKADLADQREVQ-ERQAKELAE 291
Query: 92 SLHLHSFAVSARTG 105
+ F SA TG
Sbjct: 292 KYGIPYFETSAATG 305
>gi|344296650|ref|XP_003420019.1| PREDICTED: ras-related protein Rab-6B-like [Loxodonta africana]
Length = 192
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYNV 163
>gi|54606871|ref|NP_001006108.1| RAB30, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|49250515|gb|AAH74609.1| RAB30, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 203
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +++ LV NK D+ +R V+ +R + A
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYANSEVITVLVGNKIDLAERREVSQQRAEEFAG 142
Query: 92 SLHLHSFAVSARTGDN 107
+ +++ SA+ DN
Sbjct: 143 TQNMYYLETSAKESDN 158
>gi|395830766|ref|XP_003788489.1| PREDICTED: ras-related protein Rab-27B [Otolemur garnettii]
Length = 218
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|307777770|dbj|BAJ21281.1| Rab-family small GTPase Rab4A [Tetrahymena thermophila]
Length = 212
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWV-DLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I +YDIT +SFHS+ W+ D L R + +A+ NK D++ +R V+ +
Sbjct: 86 AIIVYDITDVESFHSVKQWIADARELAR---SDICIAVCGNKCDLKEERQVSQQDAENFC 142
Query: 91 QSLHLHSFAVSARTGDN 107
+ ++ F +SA TG+N
Sbjct: 143 KENNVMFFEISALTGEN 159
>gi|5094|emb|CAA26191.1| SPRAS-protein [Schizosaccharomyces pombe]
Length = 219
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 29 GKIVIFMYDITSGQSFHSIPT-WVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ + +Y+ITS SF I T + + + K + P V LVANK D+E +RVV+
Sbjct: 80 GQGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFP--VVLVANKCDLEAERVVSRRERE 137
Query: 88 KLAQSLHLHSFAVSAR 103
+LA+S+H SA+
Sbjct: 138 QLAKSMHCLYVETSAK 153
>gi|345784453|ref|XP_541092.2| PREDICTED: ras-related protein Rab-27B [Canis lupus familiaris]
Length = 218
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|336367247|gb|EGN95592.1| hypothetical protein SERLA73DRAFT_186692 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379967|gb|EGO21121.1| hypothetical protein SERLADRAFT_475872 [Serpula lacrymans var.
lacrymans S7.9]
Length = 214
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ QSF S W+D R + + LV NK D+ +R VTLE +
Sbjct: 94 VAIVVFDITNRQSFLSTSKWIDDVRSERGNDV--IIVLVGNKADLSDKRQVTLEEATAKS 151
Query: 91 QSLHLHSFAVSARTGDN 107
L++ SA+ G N
Sbjct: 152 TQLNIMFMETSAKAGHN 168
>gi|118366113|ref|XP_001016275.1| Ras family protein [Tetrahymena thermophila]
gi|89298042|gb|EAR96030.1| Ras family protein [Tetrahymena thermophila SB210]
gi|307777812|dbj|BAJ21302.1| Rab-family small GTPase Rab8F [Tetrahymena thermophila]
Length = 207
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI Y I +SF +I W+ + +++S LV NK DME +R VT E LA
Sbjct: 88 VIMTYSINDKESFRNIEVWMK--QIRQQASVNIAKLLVGNKCDMESERQVTFEEGKSLAD 145
Query: 92 SLHLHSFAVSARTGDN 107
+ + F SA++ N
Sbjct: 146 TFGIKFFETSAKSDIN 161
>gi|301757735|ref|XP_002914720.1| PREDICTED: ras-related protein Rab-27B-like [Ailuropoda
melanoleuca]
gi|281351223|gb|EFB26807.1| hypothetical protein PANDA_002630 [Ailuropoda melanoleuca]
Length = 217
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|118355342|ref|XP_001010931.1| Ras family protein [Tetrahymena thermophila]
gi|89292698|gb|EAR90686.1| Ras family protein [Tetrahymena thermophila SB210]
Length = 212
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWV-DLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I +YDIT +SFHS+ W+ D L R + +A+ NK D++ +R V+ +
Sbjct: 86 AIIVYDITDVESFHSVKQWIADARELAR---SDICIAVCGNKCDLKEERQVSQQDAENFC 142
Query: 91 QSLHLHSFAVSARTGDN 107
+ ++ F +SA TG+N
Sbjct: 143 KENNVMFFEISALTGEN 159
>gi|403288963|ref|XP_003935642.1| PREDICTED: ras-related protein Rab-27A isoform 1 [Saimiri
boliviensis boliviensis]
gi|403288965|ref|XP_003935643.1| PREDICTED: ras-related protein Rab-27A isoform 2 [Saimiri
boliviensis boliviensis]
gi|403288967|ref|XP_003935644.1| PREDICTED: ras-related protein Rab-27A isoform 3 [Saimiri
boliviensis boliviensis]
Length = 221
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|410927824|ref|XP_003977340.1| PREDICTED: ras-related protein Rab-27B-like [Takifugu rubripes]
Length = 216
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V LV NK D+ QR V ++ +LA
Sbjct: 95 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LVGNKADLADQREVQEKQAKELADK 153
Query: 93 LHLHSFAVSARTG 105
+ F SA TG
Sbjct: 154 YGIPYFETSAATG 166
>gi|110591381|pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
gi|110591397|pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
gi|166235341|pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
gi|166235342|pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
gi|166235343|pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 77 VAVVVYDITNLNSFQQTSKWIDDVRTERGS--DVIIMLVGNKTDLADKRQITIEEGEQRA 134
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L + SA+TG N
Sbjct: 135 KELSVMFIETSAKTGYNV 152
>gi|351708549|gb|EHB11468.1| Ras-related protein Rab-6B, partial [Heterocephalus glaber]
Length = 174
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGS--DVIIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYNV 163
>gi|149721114|ref|XP_001487901.1| PREDICTED: ras-related protein Rab-27B-like [Equus caballus]
Length = 218
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|296819571|ref|XP_002849869.1| GTP-binding protein SAS1 [Arthroderma otae CBS 113480]
gi|238840322|gb|EEQ29984.1| GTP-binding protein SAS1 [Arthroderma otae CBS 113480]
Length = 205
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF +I TW ++ + +S + L+ NK D E +R VT+E+ +LA
Sbjct: 86 ILLVYDVTDERSFKNIRTWFS--NVEQHASEGVHKILIGNKCDGEEKRAVTVEQGQQLAN 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|197725035|pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
gi|197725037|pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ S P + L NK D+E QR V E +LA+
Sbjct: 98 LLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAVKEEEARELAEK 156
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 157 YGIPYFETSAANGTN 171
>gi|189217748|ref|NP_001121315.1| uncharacterized protein LOC100158399 [Xenopus laevis]
gi|115528810|gb|AAI24979.1| LOC100158399 protein [Xenopus laevis]
Length = 201
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +S+ +I W+ N +S L+ NK DME++R V ER KLA+
Sbjct: 84 IILVYDITDERSYENIQNWMKSIKEN--ASAGVERMLLGNKCDMENKRKVPKERGEKLAK 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSLN 157
>gi|38051907|gb|AAH60562.1| Rab3b protein [Rattus norvegicus]
Length = 228
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV+ E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVIPTEKGRLLAEQ 156
Query: 93 LHLHS 97
L +H+
Sbjct: 157 LGMHT 161
>gi|395746745|ref|XP_002825521.2| PREDICTED: ras-related protein Rab-27A isoform 3 [Pongo abelii]
Length = 225
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 100 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEAIALAEK 158
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 159 YGIPYFETSAANGTN 173
>gi|170087436|ref|XP_001874941.1| GTP binding protein [Laccaria bicolor S238N-H82]
gi|164650141|gb|EDR14382.1| GTP binding protein [Laccaria bicolor S238N-H82]
Length = 213
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ QSF S W+D R + + LV NK D+ +R VTLE +
Sbjct: 94 VAIVVFDITNRQSFLSTTKWIDDVRSERGNDV--IIVLVGNKADLSDKRQVTLEEATAKS 151
Query: 91 QSLHLHSFAVSARTGDN 107
L++ SA+ G N
Sbjct: 152 TQLNIMFMETSAKAGHN 168
>gi|156717362|ref|NP_001096221.1| uncharacterized protein LOC100124772 [Xenopus (Silurana)
tropicalis]
gi|111309029|gb|AAI21384.1| LOC100124772 protein [Xenopus (Silurana) tropicalis]
Length = 210
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF W+D R S + LV NK D+ +R +T E + A
Sbjct: 90 IAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITTEEGEQRA 147
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 148 KELSVMFIETSAKTGYN 164
>gi|388518999|gb|AFK47561.1| unknown [Medicago truncatula]
Length = 199
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + YDITS +SF WV L + S +ALV NK D++ +R V +E A
Sbjct: 107 VAVIAYDITSPESFSKAQYWVK--ELQKHGSPDIVMALVGNKADLQEKREVAVEDGMDYA 164
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA+T DN
Sbjct: 165 EKNGMFFIETSAKTADN 181
>gi|348517184|ref|XP_003446115.1| PREDICTED: ras-related protein Rab-3C-like [Oreochromis niloticus]
Length = 218
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF ++ W + S V L NK DME +RVV+++ LA+
Sbjct: 97 ILMYDITNEESFGAVQDWST--QIKTYSWDNAQVVLAGNKCDMEEERVVSVDNGRLLAEQ 154
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 155 LGFEFFETSAK 165
>gi|340371971|ref|XP_003384518.1| PREDICTED: intraflagellar transport protein 27 homolog [Amphimedon
queenslandica]
Length = 191
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV--ALVANKGDMEHQRVVTLERHAK 88
+V ++D+T QSF S W++ RK++ + L+ANK D+ +R VT E
Sbjct: 85 VVAVVFDVTDRQSFQSCTKWLERVK-ARKAAVELVLPGVLIANKVDLTQRREVTEEEGRS 143
Query: 89 LAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKYL 123
A+S L F SA+ DN P KYL
Sbjct: 144 FAKSKELEYFECSAKEQDNIQ--------EPFKYL 170
>gi|332230261|ref|XP_003264307.1| PREDICTED: ras-related protein Rab-27B [Nomascus leucogenys]
Length = 218
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + ++A
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQAREMADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|315040511|ref|XP_003169633.1| GTP-binding protein [Arthroderma gypseum CBS 118893]
gi|311346323|gb|EFR05526.1| GTP-binding protein [Arthroderma gypseum CBS 118893]
Length = 206
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF +I TW ++ + +S + L+ NK D E +R VT+E+ +LA
Sbjct: 86 ILLVYDVTDERSFKNIRTWFS--NVEQHASEGVHKILIGNKCDGEEKRAVTVEQGQQLAN 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|290983208|ref|XP_002674321.1| rab family small GTPase [Naegleria gruberi]
gi|284087910|gb|EFC41577.1| rab family small GTPase [Naegleria gruberi]
Length = 224
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ ++D+T+ SF + W+ N + + + LV NK DM H+RVV R +LA+
Sbjct: 86 ILVVFDLTNETSFQNTTKWIQQIKSNAQENA--LITLVGNKSDMVHRRVVDRSRAEELAK 143
Query: 92 SLHLHSFAVSARTG 105
++ F SA+ G
Sbjct: 144 KFNIPYFEASAKDG 157
>gi|464553|sp|P35281.1|RAB10_RAT RecName: Full=Ras-related protein Rab-10
gi|455344|gb|AAA41991.1| RAB10 [Rattus norvegicus]
Length = 200
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+G+SF +I W L ++++ ++ L+ NK DM+H+RVV + ++A+
Sbjct: 85 IMLVYDITNGKSFENISKW--LRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAR 142
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+ N
Sbjct: 143 EHRIRFFETSAKANIN 158
>gi|403339495|gb|EJY69009.1| Rab15, 13, 10, 1, 35, 5, and, putative [Oxytricha trifallax]
Length = 578
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 31 IVIFMYDITSGQSFHSIPTWV-----------DLFHLNRKSSTPTYVALVANKGDMEHQR 79
+++ +YD+T+ +SF ++ +W+ + + +++ LV NK D+E QR
Sbjct: 334 VIMIVYDVTNMESFLNVKSWLIELEDHFLPVNQIHNFQQQNQIEESYILVGNKADLESQR 393
Query: 80 VVTLERHAKLAQSLHLHSFAVSARTGDN 107
VT ER +LA+S L VSA +G N
Sbjct: 394 QVTKERGRELAESFGLAFIEVSACSGKN 421
>gi|291394397|ref|XP_002713590.1| PREDICTED: RAB27B, member RAS oncogene family [Oryctolagus
cuniculus]
Length = 218
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|73853886|ref|NP_001027528.1| ras-related protein Rab-27A [Sus scrofa]
gi|116256437|sp|Q4LE85.1|RB27A_PIG RecName: Full=Ras-related protein Rab-27A
gi|68445606|dbj|BAE03308.1| member RAS oncogene family, RAB27A [Sus scrofa]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|212535970|ref|XP_002148141.1| Rab GTPase SrgA, putative [Talaromyces marneffei ATCC 18224]
gi|210070540|gb|EEA24630.1| Rab GTPase SrgA, putative [Talaromyces marneffei ATCC 18224]
Length = 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + +S + L+ NK D E +R V+ E+ KLA
Sbjct: 86 ILLVYDVTDERSFNNIRTWFS--NVEQHASEGVHKILIGNKCDWEEKRAVSTEQGQKLAD 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|148705627|gb|EDL37574.1| RAB28, member RAS oncogene family, isoform CRA_b [Mus musculus]
Length = 66
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 6 MLNLHNDNYEIQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPT 64
M + ++ + QLK+V+LGD + GK ++ +YDIT+ QSF ++ W + ++ +S T
Sbjct: 1 MSDSEEESQDRQLKIVVLGDGTSGKGILLVYDITNYQSFENLEDWYSVVKTVSEESETQP 60
Query: 65 YVALVA 70
VALV
Sbjct: 61 LVALVG 66
>gi|56967660|gb|AAW31979.1| CG2532 [Drosophila melanogaster]
gi|56967672|gb|AAW31985.1| CG2532 [Drosophila melanogaster]
Length = 174
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDITS +SF +I W L + R SS V LV NK D R V +E+ A
Sbjct: 83 ILLVYDITSSKSFRNIDGW--LKEIRRMSSESVNVMLVGNKCDDLDNRQVRMEQGFNYAN 140
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++G N
Sbjct: 141 HRALGFYEVSAKSGAN 156
>gi|268577759|ref|XP_002643862.1| Hypothetical protein CBG02097 [Caenorhabditis briggsae]
Length = 223
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YD+T+ +SF ++ + L + + + + LV NK D++ +R V +R +LA
Sbjct: 87 VMCVYDMTNEKSFENMEKYW-LKEIKQHAPANAVLMLVGNKADLDQERKVDFDRAERLAS 145
Query: 92 SLHLHSFAVSARTGDNC 108
L + + VSA+TG NC
Sbjct: 146 RLGVSLYEVSAKTGINC 162
>gi|409082156|gb|EKM82514.1| hypothetical protein AGABI1DRAFT_111121 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199982|gb|EKV49906.1| GTP binding protein [Agaricus bisporus var. bisporus H97]
Length = 214
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ QSF S W++ R + + LV NK D+ +R VTLE A
Sbjct: 95 VAIVVFDITNRQSFMSTTKWIEDVRSERGNDV--IIVLVGNKADLSDKRQVTLEEATAKA 152
Query: 91 QSLHLHSFAVSARTGDN 107
L++ SA+ G N
Sbjct: 153 TQLNIMFMETSAKAGHN 169
>gi|327292479|ref|XP_003230938.1| GTP-binding protein [Trichophyton rubrum CBS 118892]
gi|326466875|gb|EGD92328.1| GTP-binding protein [Trichophyton rubrum CBS 118892]
gi|326481140|gb|EGE05150.1| GTP-binding protein [Trichophyton equinum CBS 127.97]
Length = 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF +I TW ++ + +S + L+ NK D E +R VT+E+ +LA
Sbjct: 86 ILLVYDVTDERSFKNIRTWFS--NVEQHASEGVHKILIGNKCDGEEKRAVTVEQGQQLAN 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|325180634|emb|CCA15039.1| Rab1 family GTPase putative [Albugo laibachii Nc14]
Length = 202
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T+ +SF + W++ +NR +S T LV NK D+ R VT E A
Sbjct: 84 IIMVYDVTNQESFDHVNDWLN--EVNRYASEGTCKLLVGNKSDITESRAVTYETAKAFAD 141
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 142 SLSIPFLETSAKNAQN 157
>gi|403268055|ref|XP_003926103.1| PREDICTED: ras-related protein Rab-27B [Saimiri boliviensis
boliviensis]
Length = 218
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLLDQREVNERQARELADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>gi|397515342|ref|XP_003827912.1| PREDICTED: ras-related protein Rab-27A isoform 1 [Pan paniscus]
gi|397515344|ref|XP_003827913.1| PREDICTED: ras-related protein Rab-27A isoform 2 [Pan paniscus]
gi|397515346|ref|XP_003827914.1| PREDICTED: ras-related protein Rab-27A isoform 3 [Pan paniscus]
gi|397515348|ref|XP_003827915.1| PREDICTED: ras-related protein Rab-27A isoform 4 [Pan paniscus]
gi|426379155|ref|XP_004056269.1| PREDICTED: ras-related protein Rab-27A isoform 1 [Gorilla gorilla
gorilla]
gi|426379157|ref|XP_004056270.1| PREDICTED: ras-related protein Rab-27A isoform 2 [Gorilla gorilla
gorilla]
gi|426379159|ref|XP_004056271.1| PREDICTED: ras-related protein Rab-27A isoform 3 [Gorilla gorilla
gorilla]
gi|426379161|ref|XP_004056272.1| PREDICTED: ras-related protein Rab-27A isoform 4 [Gorilla gorilla
gorilla]
gi|410333263|gb|JAA35578.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410333265|gb|JAA35579.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410333267|gb|JAA35580.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410333269|gb|JAA35581.1| RAB27A, member RAS oncogene family [Pan troglodytes]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEAIALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|312373514|gb|EFR21237.1| hypothetical protein AND_17346 [Anopheles darlingi]
Length = 194
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 79 VAVVVYDITNANSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKRQVSTEEGERKA 136
Query: 91 QSLHLHSFAVSARTG 105
+ L++ SA+ G
Sbjct: 137 KELNVMFIETSAKAG 151
>gi|1931577|gb|AAC51195.1| Rab27a [Homo sapiens]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEAIALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|71024043|ref|XP_762251.1| hypothetical protein UM06104.1 [Ustilago maydis 521]
gi|46101753|gb|EAK86986.1| hypothetical protein UM06104.1 [Ustilago maydis 521]
Length = 219
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF + WVD R + LV NK D+ +R VT E K A
Sbjct: 78 VAVVVYDITNRASFQNTSKWVDDVRAER--GNDVIIVLVGNKTDLSDKRQVTTEEAEKKA 135
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q ++ SA+ G N V
Sbjct: 136 QEFNVMFIETSAKAGHNVKV 155
>gi|55642165|ref|XP_510426.1| PREDICTED: ras-related protein Rab-27A isoform 10 [Pan troglodytes]
gi|114657146|ref|XP_001170867.1| PREDICTED: ras-related protein Rab-27A isoform 2 [Pan troglodytes]
gi|114657155|ref|XP_001170951.1| PREDICTED: ras-related protein Rab-27A isoform 6 [Pan troglodytes]
gi|114657161|ref|XP_001170998.1| PREDICTED: ras-related protein Rab-27A isoform 9 [Pan troglodytes]
gi|410217778|gb|JAA06108.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410217780|gb|JAA06109.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410217782|gb|JAA06110.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410217784|gb|JAA06111.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410249310|gb|JAA12622.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410249312|gb|JAA12623.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410249314|gb|JAA12624.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410249316|gb|JAA12625.1| RAB27A, member RAS oncogene family [Pan troglodytes]
gi|410295424|gb|JAA26312.1| RAB27A, member RAS oncogene family [Pan troglodytes]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEAIALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|24641152|ref|NP_727472.1| Rab at 9Fb [Drosophila melanogaster]
gi|22832069|gb|AAN09277.1| Rab at 9Fb [Drosophila melanogaster]
gi|90855733|gb|ABE01228.1| IP08727p [Drosophila melanogaster]
gi|220952298|gb|ACL88692.1| Rab9Fb-PA [synthetic construct]
gi|220958860|gb|ACL91973.1| Rab9Fb-PA [synthetic construct]
Length = 214
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDITS +SF +I W L + R SS V LV NK D R V +E+ A
Sbjct: 83 ILLVYDITSSKSFRNIDGW--LKEIRRMSSESVNVMLVGNKCDDLDNRQVRMEQGFNYAN 140
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++G N
Sbjct: 141 HRALGFYEVSAKSGAN 156
>gi|403413298|emb|CCL99998.1| predicted protein [Fibroporia radiculosa]
Length = 231
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ QSF S W+D R S + LV NK D+ +R V LE A
Sbjct: 92 VAIVVFDITNRQSFLSTSKWIDDVRSERGSDV--IIVLVGNKADLSDKRQVMLEEANTKA 149
Query: 91 QSLHLHSFAVSARTGDN 107
L + SA+ G N
Sbjct: 150 TQLEIMFMETSAKAGHN 166
>gi|301775152|ref|XP_002922991.1| PREDICTED: ras-related protein Rab-27A-like [Ailuropoda
melanoleuca]
gi|281353359|gb|EFB28943.1| hypothetical protein PANDA_012061 [Ailuropoda melanoleuca]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|224012645|ref|XP_002294975.1| rab-type small G protein [Thalassiosira pseudonana CCMP1335]
gi|220969414|gb|EED87755.1| rab-type small G protein [Thalassiosira pseudonana CCMP1335]
Length = 213
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD TS SF + W L +NR +S T LV NK D R VT E+ + A
Sbjct: 91 IIMVYDTTSSDSFDHVNDW--LKEVNRYASEGTCKLLVGNKSDRTADRAVTTEQAKEFAD 148
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+T N
Sbjct: 149 DLGVAFLETSAKTAKN 164
>gi|206533|gb|AAA41993.1| RAB13, partial [Rattus norvegicus]
Length = 164
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ +LA+
Sbjct: 45 IILVYDITDEKSFENIQNWMKSIKEN--ASAEVERLLLGNKCDMEAKRKVQREQAERLAR 102
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 103 EHRIRFFETSAKSSVN 118
>gi|410961195|ref|XP_003987169.1| PREDICTED: ras-related protein Rab-27A [Felis catus]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|47217500|emb|CAG10880.1| unnamed protein product [Tetraodon nigroviridis]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF ++ W + S V L NK DME +RVV+++ LA+
Sbjct: 100 ILMYDITNEESFGAVQDWST--QIKTYSWDNAQVVLAGNKCDMEEERVVSVDSGRLLAEQ 157
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 158 LGFEFFETSAK 168
>gi|357619652|gb|EHJ72138.1| ras small monomeric GTPase Rab6 [Danaus plexippus]
Length = 208
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 88 VAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEDGDRKA 145
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYNV 163
>gi|296214062|ref|XP_002753503.1| PREDICTED: ras-related protein Rab-27A isoform 1 [Callithrix
jacchus]
gi|390468679|ref|XP_003733977.1| PREDICTED: ras-related protein Rab-27A isoform 2 [Callithrix
jacchus]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|290977760|ref|XP_002671605.1| rab family small GTPase [Naegleria gruberi]
gi|284085175|gb|EFC38861.1| rab family small GTPase [Naegleria gruberi]
Length = 212
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT +FH + +W L ++ T + L+ NK D+E QR V+ E ++ A+
Sbjct: 83 ALMVYDITRRNTFHHLASW--LTDARNLTNPHTIIVLIGNKSDLEDQRQVSFEEASRFAK 140
Query: 92 SLHLHSFAVSARTGDN 107
L SA+TG+N
Sbjct: 141 ENGLVYVETSAKTGEN 156
>gi|197945450|gb|ACH80203.1| GTP-binding protein RAB2-like protein [Paramecium biaurelia]
gi|197945458|gb|ACH80207.1| GTP-binding protein RAB2-like protein [Paramecium triaurelia]
gi|197945460|gb|ACH80208.1| GTP-binding protein RAB2-like protein [Paramecium triaurelia]
gi|197945462|gb|ACH80209.1| GTP-binding protein RAB2-like protein [Paramecium triaurelia]
gi|197945464|gb|ACH80210.1| GTP-binding protein RAB2-like protein [Paramecium triaurelia]
gi|197945466|gb|ACH80211.1| GTP-binding protein RAB2-like protein [Paramecium triaurelia]
gi|197945468|gb|ACH80212.1| GTP-binding protein RAB2-like protein [Paramecium triaurelia]
Length = 107
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
S G I++F D+T+ +SF ++ W + + + + +V NK D+E +R V E
Sbjct: 1 SIGGILVF--DVTNRESFENVQKWHN--EIQGYACDKIEMVIVGNKIDLEERREVKTEEG 56
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
K AQ F SA+TG+N
Sbjct: 57 KKFAQKFGFDYFETSAKTGEN 77
>gi|440309849|ref|NP_001258967.1| ras-related protein Rab-13 isoform 2 [Homo sapiens]
Length = 122
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 3 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 60
Query: 92 SLHLHSFAVSART 104
+ F SA++
Sbjct: 61 EHGIRFFETSAKS 73
>gi|440296060|gb|ELP88906.1| hypothetical protein EIN_476180 [Entamoeba invadens IP1]
Length = 202
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+F+YDIT SF ++ WV+ + +K T LV NK D+ R+V++E +LA+
Sbjct: 86 ALFVYDITMPSSFKAVEEWVN--TMKQKGDATTSFVLVGNKEDLATNRMVSIEEGQELAK 143
Query: 92 SLHLHSFAVSARTG 105
+ SA TG
Sbjct: 144 KIGCPYIECSALTG 157
>gi|417408870|gb|JAA50969.1| Putative rab subfamily protein of small gtpase, partial [Desmodus
rotundus]
Length = 232
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + ++A
Sbjct: 110 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQAREMADK 168
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 169 YGIPYFETSAATGQN 183
>gi|345494263|ref|XP_001605584.2| PREDICTED: ras-related protein Rab-8A-like [Nasonia vitripennis]
Length = 208
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ MYD+TS +SF+ + W L ++ +S L ANK D QR V ER K+A+
Sbjct: 84 ILLMYDVTSLESFNHLSYW--LRNIQENASPDVVKVLAANKCDASTQRAVDAERGQKIAE 141
Query: 92 SLHLHSFAVSARTGDN 107
+ + F VS + N
Sbjct: 142 NFDMPFFEVSCKENIN 157
>gi|19923264|ref|NP_004571.2| ras-related protein Rab-27A [Homo sapiens]
gi|34485706|ref|NP_899057.1| ras-related protein Rab-27A [Homo sapiens]
gi|34485709|ref|NP_899058.1| ras-related protein Rab-27A [Homo sapiens]
gi|34485711|ref|NP_899059.1| ras-related protein Rab-27A [Homo sapiens]
gi|116242744|sp|P51159.3|RB27A_HUMAN RecName: Full=Ras-related protein Rab-27A; Short=Rab-27; AltName:
Full=GTP-binding protein Ram
gi|17432607|gb|AAL39097.1|AF443871_1 Ras-like GTP-binding protein [Homo sapiens]
gi|20379082|gb|AAM21101.1|AF498953_1 small GTP binding protein RAB27A [Homo sapiens]
gi|4572590|gb|AAC50271.2| Rab27a [Homo sapiens]
gi|5712736|gb|AAD47629.1| Ras-like GTP-binding protein [Homo sapiens]
gi|49168480|emb|CAG38735.1| RAB27A [Homo sapiens]
gi|49456347|emb|CAG46494.1| RAB27A [Homo sapiens]
gi|78070788|gb|AAI07681.1| RAB27A, member RAS oncogene family [Homo sapiens]
gi|119597882|gb|EAW77476.1| RAB27A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119597883|gb|EAW77477.1| RAB27A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119597884|gb|EAW77478.1| RAB27A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119597885|gb|EAW77479.1| RAB27A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|124376892|gb|AAI32801.1| RAB27A, member RAS oncogene family [Homo sapiens]
gi|189053524|dbj|BAG35690.1| unnamed protein product [Homo sapiens]
gi|223460476|gb|AAI36424.1| RAB27A, member RAS oncogene family [Homo sapiens]
gi|313882796|gb|ADR82884.1| RAB27A, member RAS oncogene family (RAB27A), transcript variant 4
[synthetic construct]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEAIALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|301774282|ref|XP_002922543.1| PREDICTED: ras-related protein Rab-13-like [Ailuropoda melanoleuca]
gi|281350220|gb|EFB25804.1| hypothetical protein PANDA_011544 [Ailuropoda melanoleuca]
Length = 203
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQAVKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSTN 157
>gi|123412458|ref|XP_001304067.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121885493|gb|EAX91137.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 192
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 34 FMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL 93
++D+T ++F +I WV LF N + + Y+A NK D+ +R V+ ++ K A
Sbjct: 89 IVFDVTDLETFDTIDEWVGLFRQNSQPNAIIYLA--GNKCDLTDERQVSYDKAQKYAMDH 146
Query: 94 HLHSFAVSARTGDN 107
+ + VSA+TG N
Sbjct: 147 DMKYYEVSAKTGQN 160
>gi|21311975|ref|NP_080953.1| ras-related protein Rab-13 [Mus musculus]
gi|46577121|sp|Q9DD03.1|RAB13_MOUSE RecName: Full=Ras-related protein Rab-13; Flags: Precursor
gi|12832187|dbj|BAB22000.1| unnamed protein product [Mus musculus]
gi|20070865|gb|AAH27214.1| RAB13, member RAS oncogene family [Mus musculus]
gi|148683212|gb|EDL15159.1| RAB13, member RAS oncogene family [Mus musculus]
Length = 202
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRQVQREQAEKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHRIRFFETSAKSSVN 157
>gi|348572112|ref|XP_003471838.1| PREDICTED: ras-related protein Rab-27A-like [Cavia porcellus]
Length = 220
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ +P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCDSPDIV-LCGNKSDLEDQRVVKEEEARALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGVPYFETSAANGTN 169
>gi|48146269|emb|CAG33357.1| RAB27A [Homo sapiens]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEAIALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|60835441|gb|AAX37139.1| RAB27A member RAS oncogene family [synthetic construct]
gi|60835467|gb|AAX37140.1| RAB27A member RAS oncogene family [synthetic construct]
Length = 222
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEAIALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|292626341|ref|XP_685654.3| PREDICTED: ras-related protein Rab-3B [Danio rerio]
Length = 217
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +S++++ W + S V LV NK DM+ +RVV E+ LA
Sbjct: 98 ILMYDITNEESYNAVQDWAT--QIKTYSWDNAQVILVGNKCDMDEERVVPFEKGKHLADQ 155
Query: 93 LHLHSFAVSARTGDN 107
L + SA+ N
Sbjct: 156 LGFEYYEASAKENIN 170
>gi|56757031|gb|AAW26687.1| SJCHGC02776 protein [Schistosoma japonicum]
gi|257206208|emb|CAX82755.1| RAB family [Schistosoma japonicum]
Length = 203
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDI + +SF W+D R S + LV NK D+ +R VT E +LA
Sbjct: 85 VAVVVYDICNAESFQLTSKWIDDVRNERGSD--VIIMLVGNKTDLSDKRTVTTEEGERLA 142
Query: 91 QSLHLHSFAVSARTGDNCWV 110
L++ SA+ G N V
Sbjct: 143 GQLNVMFIETSAKAGYNVKV 162
>gi|341902814|gb|EGT58749.1| hypothetical protein CAEBREN_05163 [Caenorhabditis brenneri]
Length = 229
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVA--LVANKGDMEHQRVVTLERHAKL 89
V+ +YDIT+ +SF + WV LN +P+ LV K DM+ QR V E
Sbjct: 94 VLAIYDITNRESFEHVENWVKEAALNLGGPSPSKCVFQLVGTKCDMDAQRQVNYEEGEYF 153
Query: 90 AQSLHLHSFAVSARTGDN 107
A+ + S+R+GDN
Sbjct: 154 AKYHKMKFIETSSRSGDN 171
>gi|67541621|ref|XP_664578.1| hypothetical protein AN6974.2 [Aspergillus nidulans FGSC A4]
gi|40742430|gb|EAA61620.1| hypothetical protein AN6974.2 [Aspergillus nidulans FGSC A4]
gi|259483720|tpe|CBF79342.1| TPA: Rab GTPase SrgA (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF +I TW ++ + +S + L+ NK D E +R VT E+ +LA
Sbjct: 86 ILLVYDVTDERSFQNIRTWFS--NVEQHASEGVHKILIGNKCDWEEKRAVTTEQGQQLAD 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|67480015|ref|XP_655377.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|13537437|dbj|BAB40673.1| small GTPase Rab5 [Entamoeba histolytica]
gi|56472508|gb|EAL49990.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
Length = 195
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS SF W+D R S + LV NK D+++ RV+T E A+
Sbjct: 84 ALVVYDITSDSSFIQAKKWIDEL---RGSGNEAIIFLVGNKCDLDNSRVITKEEAEGYAR 140
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 141 SLSIDYIETSAKANIN 156
>gi|47211791|emb|CAF93705.1| unnamed protein product [Tetraodon nigroviridis]
Length = 143
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDIT+ SF+++ W + S V LV NK D+E R+V E +LA+
Sbjct: 23 LLMYDITNQDSFNAVQDWA--TQIKTYSWDNAQVILVGNKCDLEDDRLVPTEDGQRLAEE 80
Query: 93 LHLHSFAVSARTGDNC-WVNTRTPEINPLKYLQS-NNEYNFLSMVG 136
L F SA+ N V R +I K +S E NFLS G
Sbjct: 81 LGFQFFEASAKDNINVKQVFERLVDIICDKMNESMEGEGNFLSSQG 126
>gi|401623607|gb|EJS41700.1| vps21p [Saccharomyces arboricola H-6]
Length = 210
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ---RVVTLERHAKL 89
+ +YD+T QSF WV H ++S +ALV NK DM + R V E KL
Sbjct: 84 LVVYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKVDMLQEGGERKVAREEGEKL 141
Query: 90 AQSLHLHSFAVSARTGDNC 108
A+ L F SA+TG+N
Sbjct: 142 AEEKGLLFFETSAKTGENV 160
>gi|384487253|gb|EIE79433.1| GTP-binding protein ryh1 [Rhizopus delemar RA 99-880]
Length = 153
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDI++ QSF + W+D R + LV NK D+ +R VT + K A
Sbjct: 34 VAVIVYDISNRQSFTNTSKWIDDVRAER--GDDVIIVLVGNKSDLSDKREVTTDDGEKRA 91
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 92 KELNVMFIETSAKAGHN 108
>gi|299753222|ref|XP_001833137.2| ryh1 [Coprinopsis cinerea okayama7#130]
gi|298410200|gb|EAU88826.2| ryh1 [Coprinopsis cinerea okayama7#130]
Length = 214
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ QSF S W+D R + + LV NK D+ +R VT+E A
Sbjct: 95 VAIVVFDITNRQSFLSTTKWIDDVRSERGNDV--IIVLVGNKADLSDKRQVTVEEATTKA 152
Query: 91 QSLHLHSFAVSARTGDN 107
L++ SA+ G N
Sbjct: 153 TQLNIMFMETSAKAGHN 169
>gi|388857378|emb|CCF49052.1| probable YPT6-GTP-binding protein of the rab family [Ustilago
hordei]
Length = 218
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF + WVD R + + LV NK D+ +R VT + K A
Sbjct: 93 VAVVVYDITNRASFQNTSKWVDDVRAERGNDV--IIVLVGNKTDLSDKRQVTTDEAEKKA 150
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q ++ SA+ G N V
Sbjct: 151 QEFNVMFIETSAKAGHNVKV 170
>gi|414883913|tpg|DAA59927.1| TPA: hypothetical protein ZEAMMB73_741957 [Zea mays]
Length = 130
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T SF++I W+ ++ + +S LV NK DM+ +RVV++ + KLA
Sbjct: 3 ILLVYDVTDESSFNNIRNWIR--NIEQHASDNVNKILVGNKVDMDAKRVVSMAQGQKLAD 60
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+T N
Sbjct: 61 EYGIKFFETSAKTNQN 76
>gi|340506305|gb|EGR32473.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 211
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++DIT QSF ++ W + + + + LV NK DM R V + +LAQ
Sbjct: 88 IAVVFDITDKQSFENVKGW--MVEIEKYAQENVCRILVGNKTDMNENRQVQYQEGQELAQ 145
Query: 92 SLHLHSFAVSARTGDN 107
+L+ VSA++G+N
Sbjct: 146 MYNLNYIEVSAKSGEN 161
>gi|296425671|ref|XP_002842363.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638628|emb|CAZ86554.1| unnamed protein product [Tuber melanosporum]
Length = 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + ++ L+ NK D E +RVV+ ER +LA
Sbjct: 86 ILLVYDVTDERSFNNIRTWFS--NVEQHATEGVNKILIGNKCDWEEKRVVSTERGQQLAD 143
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++ N
Sbjct: 144 ELGIPFMEVSAKSNIN 159
>gi|237820631|ref|NP_001153783.1| Rab-protein 14 [Tribolium castaneum]
Length = 215
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWV-DLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ +YDIT +++ + +W+ D +L S T + L+ NK D+E QR VT E +K A
Sbjct: 87 ALMVYDITRRSTYNHLSSWLTDTRNLTNPS---TVIFLIGNKCDLEGQRDVTYEEASKFA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L SA+TGDN
Sbjct: 144 EENGLMFVEASAKTGDN 160
>gi|123475443|ref|XP_001320899.1| Ras family protein [Trichomonas vaginalis G3]
gi|121903714|gb|EAY08676.1| Ras family protein [Trichomonas vaginalis G3]
Length = 1044
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 11 NDNYEIQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPT-YVALV 69
N+ Y K+ G IVI ++D+T ++F + +W+D R P V L+
Sbjct: 286 NEKYSSLTKIYFKG----AFIVILVFDLTQRKTFEDLTSWLDDI---RTFCDPNCIVQLI 338
Query: 70 ANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTG 105
NK D+ H+RV++ E AQ +++ VSA++G
Sbjct: 339 GNKSDLNHKRVISFEEANFFAQRNNMNYMEVSAKSG 374
>gi|112292985|dbj|BAF02870.1| Rab13 [Mus musculus]
Length = 202
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRQVQREQAEKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHRIRFFETSAKSSVN 157
>gi|56967662|gb|AAW31980.1| CG2532 [Drosophila melanogaster]
gi|56967664|gb|AAW31981.1| CG2532 [Drosophila melanogaster]
gi|56967668|gb|AAW31983.1| CG2532 [Drosophila melanogaster]
gi|56967674|gb|AAW31986.1| CG2532 [Drosophila melanogaster]
gi|56967676|gb|AAW31987.1| CG2532 [Drosophila melanogaster]
Length = 174
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDITS +SF +I W L + R SS V LV NK D R V +E+ A
Sbjct: 83 ILLVYDITSSKSFRNIDGW--LKEIRRMSSESVNVMLVGNKCDDLDNRQVRMEQGFNYAN 140
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++G N
Sbjct: 141 HRALGFYEVSAKSGAN 156
>gi|145504759|ref|XP_001438346.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834286|emb|CAI44505.1| rab_A69 [Paramecium tetraurelia]
gi|124405518|emb|CAK70949.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
S G I++F D+TS QSF + W + + + +V NK D+E +R V E
Sbjct: 80 SIGGILVF--DVTSRQSFEDLQKWYQ--EIQGYACDKIEMVIVGNKIDLEDRREVQTEEA 135
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
K AQ F SA+TG+N
Sbjct: 136 RKYAQKQGFAYFETSAKTGEN 156
>gi|355714884|gb|AES05149.1| RAB27A, member RAS oncoprotein family [Mustela putorius furo]
Length = 220
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|167382026|ref|XP_001735948.1| RAB [Entamoeba dispar SAW760]
gi|165901854|gb|EDR27841.1| RAB, putative [Entamoeba dispar SAW760]
Length = 190
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YD+T+ +F I W D K+ + LV NK D +R+V+ E +LA+
Sbjct: 81 AVIVYDVTNRTTFDDIRGWCDEIF---KAESDVVCMLVGNKADNNQERLVSYEEGEELAK 137
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+TG+N
Sbjct: 138 ELGILFSEASAKTGEN 153
>gi|405963194|gb|EKC28791.1| Ras-related protein Rab-6B [Crassostrea gigas]
Length = 209
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T E + A
Sbjct: 88 VAVVVYDITNANSFQQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQITTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+ G N
Sbjct: 146 KELSVMFIETSAKAGYN 162
>gi|297816780|ref|XP_002876273.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322111|gb|EFH52532.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 202
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDITS +SF WV L + S +ALV NK D+ +R V E LA
Sbjct: 109 VAVIVYDITSPESFKKAQYWVK--ELQKHGSPDIVMALVGNKADLHEKREVPTEDGIGLA 166
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA+T DN
Sbjct: 167 EKNGMFFIETSAKTADN 183
>gi|449269313|gb|EMC80103.1| Ras-related protein Rab-27A [Columba livia]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P + L NK D+E QR+V + +LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPD-IVLCGNKSDLEDQRMVKEDEAKELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G+N
Sbjct: 155 YGIPYFETSAANGNN 169
>gi|348689686|gb|EGZ29500.1| hypothetical protein PHYSODRAFT_323017 [Phytophthora sojae]
Length = 236
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-L 89
+ + YD+T QSF + W+ + N Y LV NK D+ RV++ E+H +
Sbjct: 84 VALLCYDVTDAQSFSDVEDWLHVARENGDKQMNLY--LVGNKTDLVAHRVISNEKHEDFI 141
Query: 90 AQSLHLHSFAVSARTGDN 107
Q L F VSA++GDN
Sbjct: 142 RQHGLLGGFLVSAQSGDN 159
>gi|29841087|gb|AAP06100.1| SJCHGC09497 protein [Schistosoma japonicum]
Length = 224
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YDIT +F I TW L R +S T + L+ NK D++ QR VT E +A
Sbjct: 88 VLLVYDITRKLTFTRIQTW--LTDARRLTSPDTVIFLIGNKADLDGQRDVTFEEAKLVAD 145
Query: 92 SLHLHSFAVSARTGDN 107
L SA++G N
Sbjct: 146 ENDLMFLECSAKSGAN 161
>gi|225445266|ref|XP_002284542.1| PREDICTED: ras-related protein RHN1 isoform 1 [Vitis vinifera]
gi|359484588|ref|XP_003633124.1| PREDICTED: ras-related protein RHN1 isoform 2 [Vitis vinifera]
gi|297738837|emb|CBI28082.3| unnamed protein product [Vitis vinifera]
Length = 200
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS SF WV L R+ + + LVANK D+E +R V E+ + A+
Sbjct: 86 AVVVYDITSMDSFERAKKWVQ--ELQRQGNPNLLMILVANKADLETKREVENEKGEQYAK 143
Query: 92 SLHLHSFAVSARTGDN 107
L F SA+T N
Sbjct: 144 ENGLLFFETSAKTAQN 159
>gi|25153277|ref|NP_495984.2| Protein RAB-39 [Caenorhabditis elegans]
gi|19571635|emb|CAA87774.2| Protein RAB-39 [Caenorhabditis elegans]
Length = 229
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVA--LVANKGDMEHQRVVTLERHAKL 89
V+ +YD T+ +SF + WV LN +P+ LV K DM+ QR V E
Sbjct: 94 VLAIYDTTNRESFEHVENWVKEAALNLGGPSPSKCVFQLVGTKSDMDSQRQVNYEEGEYF 153
Query: 90 AQSLHLHSFAVSARTGDN 107
A+ + S+RTGDN
Sbjct: 154 AKYHKMKFIETSSRTGDN 171
>gi|426233276|ref|XP_004010643.1| PREDICTED: ras-related protein Rab-27A isoform 1 [Ovis aries]
gi|426233278|ref|XP_004010644.1| PREDICTED: ras-related protein Rab-27A isoform 2 [Ovis aries]
gi|192758053|gb|ACF04949.1| RAB27A [Ovis aries]
gi|212276819|gb|ACJ22856.1| Rab27a [Capra hircus]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGVPYFETSAANGTN 169
>gi|431895979|gb|ELK05397.1| Ras-related protein Rab-27A [Pteropus alecto]
Length = 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQVHAYCENPDIV-LCGNKSDLEEQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|158256738|dbj|BAF84342.1| unnamed protein product [Homo sapiens]
Length = 219
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V V NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVIPVGNKCDMEEERVVPTEKGQLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>gi|155372255|ref|NP_001094740.1| ras-related protein Rab-27A [Bos taurus]
gi|151554931|gb|AAI47902.1| RAB27A protein [Bos taurus]
gi|296483178|tpg|DAA25293.1| TPA: Ras-related protein Rab-27A [Bos taurus]
Length = 221
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGVPYFETSAANGTN 169
>gi|6324663|ref|NP_014732.1| Vps21p [Saccharomyces cerevisiae S288c]
gi|549795|sp|P36017.1|VPS21_YEAST RecName: Full=Vacuolar protein sorting-associated protein 21;
AltName: Full=GTP-binding protein YPT51; AltName:
Full=Vacuolar protein-targeting protein 12
gi|441477|emb|CAA82543.1| VPS21 product [Saccharomyces cerevisiae]
gi|483567|emb|CAA53769.1| ypt51p [Saccharomyces cerevisiae]
gi|1164935|emb|CAA64010.1| YOR3154c [Saccharomyces cerevisiae]
gi|1420257|emb|CAA99285.1| VPS21 [Saccharomyces cerevisiae]
gi|151945713|gb|EDN63954.1| small GTP-binding protein [Saccharomyces cerevisiae YJM789]
gi|190407421|gb|EDV10688.1| vacuolar protein sorting-associated protein 21 [Saccharomyces
cerevisiae RM11-1a]
gi|207341191|gb|EDZ69312.1| YOR089Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272985|gb|EEU07949.1| Vps21p [Saccharomyces cerevisiae JAY291]
gi|259149571|emb|CAY86375.1| Vps21p [Saccharomyces cerevisiae EC1118]
gi|285814973|tpg|DAA10866.1| TPA: Vps21p [Saccharomyces cerevisiae S288c]
gi|323302866|gb|EGA56670.1| Vps21p [Saccharomyces cerevisiae FostersB]
gi|323307162|gb|EGA60445.1| Vps21p [Saccharomyces cerevisiae FostersO]
gi|323331470|gb|EGA72885.1| Vps21p [Saccharomyces cerevisiae AWRI796]
gi|323335502|gb|EGA76787.1| Vps21p [Saccharomyces cerevisiae Vin13]
gi|323346523|gb|EGA80810.1| Vps21p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352075|gb|EGA84612.1| Vps21p [Saccharomyces cerevisiae VL3]
gi|349581251|dbj|GAA26409.1| K7_Vps21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763044|gb|EHN04575.1| Vps21p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296418|gb|EIW07520.1| Vps21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 210
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ---RVVTLER 85
+ + +YD+T QSF WV H ++S +ALV NK DM + R V E
Sbjct: 80 AQAALVVYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKIDMLQEGGERKVAREE 137
Query: 86 HAKLAQSLHLHSFAVSARTGDN 107
KLA+ L F SA+TG+N
Sbjct: 138 GEKLAEEKGLLFFETSAKTGEN 159
>gi|410918321|ref|XP_003972634.1| PREDICTED: ras-related protein Rab-3D-like [Takifugu rubripes]
Length = 221
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDITS +SF ++ W + S V LV NK D+E +R V E +LA
Sbjct: 101 LLMYDITSQESFCAVQDWAT--QIKTYSWGDAQVVLVGNKADLEEERQVPTEDAQRLATE 158
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 159 LGFRFFEASAK 169
>gi|256082187|ref|XP_002577342.1| rab 3 and [Schistosoma mansoni]
Length = 236
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ WV + S V LV NK D+ R V+++R LA
Sbjct: 111 ILMYDITNEESFNAVQDWVT--QIKTYSWDNAQVVLVGNKCDLVDDRAVSVDRGRHLAHQ 168
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 169 LGLEFFEASAK 179
>gi|195566083|ref|XP_002106620.1| GD16021 [Drosophila simulans]
gi|194204002|gb|EDX17578.1| GD16021 [Drosophila simulans]
Length = 206
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YDITS +SF +I W L + R V LV NK D R V E+ + A+
Sbjct: 83 VLLVYDITSSKSFENIGGW--LKEIMRMCPDKLNVVLVGNKCDDLDHRQVDPEQAFQYAR 140
Query: 92 SLHLHSFAVSARTGDNCW 109
HS VSA++G+N +
Sbjct: 141 RRGFHSAEVSAKSGENVY 158
>gi|28875789|ref|NP_789862.1| ras-related protein Rab-3C [Bos taurus]
gi|162764|gb|AAA30418.1| GTP-binding protein [Bos taurus]
Length = 218
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSS-TPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I MYDIT+ +SF+++ W LN+ S V LV NK DME +RV++ E L +
Sbjct: 99 ILMYDITNEESFNAVQDW----SLNQTYSWDNAQVILVGNKCDMEDERVISSEEGQHLGE 154
Query: 92 SLHLHSFAVSAR 103
L F SA+
Sbjct: 155 HLGFEFFETSAK 166
>gi|403362162|gb|EJY80798.1| Rab GTPase 2d [Oxytricha trifallax]
Length = 230
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT QSF ++ W++ + + + + LV NK D++++R V+ E + A+
Sbjct: 86 ALLVYDITKRQSFENLVRWLE--EMKENAYSKMTIILVGNKADLDNEREVSFEEGQQFAK 143
Query: 92 SLHLHSFAVSARTGDN 107
+L F SA+T N
Sbjct: 144 KNNLMFFETSAKTAMN 159
>gi|145552015|ref|XP_001461684.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831212|emb|CAI39263.1| rab_B73 [Paramecium tetraurelia]
gi|124429519|emb|CAK94311.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I ++ +TS +SF S+P WV N S +++V N D+E +R V+ E + A
Sbjct: 86 IIIVFKLTSRESFLSVPGWVKDIQDN--SDQGVVISMVGNMSDLEAERTVSNEEARQKAM 143
Query: 92 SLHLHSFAVSARTG---DNCWVNTR---TPEINPLKYLQSNNEYN 130
+ F SA TG D+ ++NT + + NP++ +N+E N
Sbjct: 144 EYNALYFETSAATGQNIDDIFINTLEKVSQQNNPIR---TNSEQN 185
>gi|298707797|emb|CBJ30228.1| Rab1B, RAB family GTPase [Ectocarpus siliculosus]
Length = 203
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R + LV NK D+E +R VT E A
Sbjct: 84 IIVVYDVTDKESFNNVKQW--LHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFAD 141
Query: 92 SLHLHSFAVSARTGDN 107
+L + SA+ N
Sbjct: 142 TLGIEFLETSAKNASN 157
>gi|403217405|emb|CCK71899.1| hypothetical protein KNAG_0I01080 [Kazachstania naganishii CBS
8797]
Length = 253
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM----EHQRVVTLE 84
+ + +YD+T QSF WV H ++S +ALV NK DM +R V E
Sbjct: 80 AQAALVVYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKIDMLDEDPTERKVARE 137
Query: 85 RHAKLAQSLHLHSFAVSARTGDNC 108
KLAQ +L F SA+TG N
Sbjct: 138 EGEKLAQEENLLFFETSAKTGANV 161
>gi|46250060|gb|AAH68652.1| MGC80016 protein [Xenopus laevis]
Length = 126
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQ 91
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V ER AK LA
Sbjct: 4 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLSDQREVN-ERQAKELAD 61
Query: 92 SLHLHSFAVSARTG 105
+ F SA +G
Sbjct: 62 KYGIPYFETSAASG 75
>gi|154422723|ref|XP_001584373.1| hypothetical protein [Trichomonas vaginalis G3]
gi|62736316|gb|AAX97487.1| small Rab GTPase RabX10 [Trichomonas vaginalis]
gi|121918620|gb|EAY23387.1| hypothetical protein TVAG_070500 [Trichomonas vaginalis G3]
Length = 196
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
+CG I+I +YDIT +F + W++ RK ++ + LV NK D+E +R VT +
Sbjct: 79 NCGGIII-VYDITRHDTFTKVTEWIEDV---RKITSNVPLLLVGNKADLEDKRAVTEQEA 134
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
+LA + L SA+T N
Sbjct: 135 KELANRMGLVLLETSAKTALN 155
>gi|195566061|ref|XP_002106609.1| GD16978 [Drosophila simulans]
gi|194203991|gb|EDX17567.1| GD16978 [Drosophila simulans]
Length = 207
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ +YDITS +SF +I W L + R V LV NK D R V E+ + A+
Sbjct: 83 VLLVYDITSSKSFENIGGW--LKEIMRMCPDKLNVVLVGNKCDDLDHRQVDPEQALQYAR 140
Query: 92 SLHLHSFAVSARTGDNCW 109
HS VSA++G+N +
Sbjct: 141 RRGFHSDEVSAKSGENVY 158
>gi|402594149|gb|EJW88075.1| hypothetical protein WUBG_01016 [Wuchereria bancrofti]
Length = 213
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++DIT+ QSF +I W+ ++ TP + + NK D+E++R V+ R +LA
Sbjct: 93 ILIFDITNEQSFLNIRDWLSQLKIHAYCETPD-IIICGNKSDLENRRQVSTARAKQLADQ 151
Query: 93 LHLHSFAVSARTGDN 107
L L F SA + N
Sbjct: 152 LGLPYFETSAYSSAN 166
>gi|326677505|ref|XP_685861.3| PREDICTED: ras-related protein Rab-27B-like isoform 1, partial
[Danio rerio]
Length = 223
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V LV NK D+ QR V ++ +LA
Sbjct: 102 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LVGNKADLADQREVQEKQAKELADK 160
Query: 93 LHLHSFAVSARTG 105
+ F SA TG
Sbjct: 161 YGIPYFETSAATG 173
>gi|123457480|ref|XP_001316467.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121899174|gb|EAY04244.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 198
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
I I ++DITS +F + +W++ N + + +V NK D+E R V+++ +
Sbjct: 78 ANIAIIVFDITSMNTFKQVKSWINEVKTNVQD---IIIMVVGNKHDLEANRAVSMDEANE 134
Query: 89 LAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSNNEYNF 131
L QS + SA TG + T IN Y++S N+ +F
Sbjct: 135 LCQSFGVEYVETSALTGYGIDIVFETVVIN---YIKSMNQKSF 174
>gi|395860030|ref|XP_003802320.1| PREDICTED: ras-related protein Rab-13 [Otolemur garnettii]
Length = 201
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ + +S L+ NK DME +R V E+ KLAQ
Sbjct: 84 IILVYDITDEKSFENIQNWMK--SIKEHASAGVERLLLGNKCDMEAKRRVQKEQADKLAQ 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSVN 157
>gi|345803013|ref|XP_855128.2| PREDICTED: ras-related protein Rab-13 [Canis lupus familiaris]
Length = 293
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 174 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQAIKLAR 231
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 232 EHGIRFFETSAKSSTN 247
>gi|149246283|ref|XP_001527611.1| GTP-binding protein SAS1 [Lodderomyces elongisporus NRRL YB-4239]
gi|146447565|gb|EDK41953.1| GTP-binding protein SAS1 [Lodderomyces elongisporus NRRL YB-4239]
Length = 208
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF ++ W +++ ++ + LV NK D E R V+ E+ +LAQ
Sbjct: 90 IVLIYDVTDARSFENVQNWFQT--VSQHANEEAQIFLVGNKCDDEENRQVSREQGEELAQ 147
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+T N
Sbjct: 148 KLQIPFLEASAKTNQN 163
>gi|326436079|gb|EGD81649.1| whole genome shotgun sequence assembly [Salpingoeca sp. ATCC 50818]
Length = 209
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDI++ +SF+++ W L +S + LV NK D+E R VT ++ AQ
Sbjct: 84 ALLVYDISNRESFNALTNW--LTDARTLASPDIVIVLVGNKKDLEADREVTFLEASRFAQ 141
Query: 92 SLHLHSFAVSARTGDN 107
L SARTG+N
Sbjct: 142 ENELMFLETSARTGEN 157
>gi|440897484|gb|ELR49160.1| hypothetical protein M91_14795 [Bos grunniens mutus]
Length = 221
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGVPYFETSAANGTN 169
>gi|118365218|ref|XP_001015830.1| Ras family protein [Tetrahymena thermophila]
gi|89297597|gb|EAR95585.1| Ras family protein [Tetrahymena thermophila SB210]
gi|307777802|dbj|BAJ21297.1| Rab-family small GTPase Rab6B [Tetrahymena thermophila]
Length = 227
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT+ SF ++ WV+ R ++ ++ ++ NK D+E ++V E AK A+
Sbjct: 87 AIIVYDITNQNSFSNVTKWVEEVKEERGNN--AFIFILGNKSDLEDRKVSLEEGQAK-AK 143
Query: 92 SLHLHSFAVSARTGDN 107
L+ VSA+TG N
Sbjct: 144 QFGLNFCEVSAKTGQN 159
>gi|350588338|ref|XP_003357268.2| PREDICTED: ras-related protein Rab-30-like, partial [Sus scrofa]
Length = 117
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 36 YDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL 95
YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + +++ +
Sbjct: 3 YDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM 60
Query: 96 HSFAVSARTGDN 107
+ SA+ DN
Sbjct: 61 YYLETSAKESDN 72
>gi|328874031|gb|EGG22397.1| hypothetical protein DFA_04515 [Dictyostelium fasciculatum]
Length = 145
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ ++DIT+ +SF +P W++ H NR + +Y L+ NK D+E+QR+V+ + A
Sbjct: 39 IFLVFDITNRRSFLDLPEWLE--HFNRFELDQKSYTILIGNKLDLENQRLVSFDEAQTFA 96
Query: 91 QSLHLHSFAVSARTGDN 107
L +SA +N
Sbjct: 97 LKNGLQYIEISALQDEN 113
>gi|123423332|ref|XP_001306356.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121887925|gb|EAX93426.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 198
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++D+T ++ S+ +W+D F R +S +V + ANK D+E ++E ++ A
Sbjct: 86 IAVFDLTRKETLQSLESWIDTF---RSNSDDNFVVIAANKSDLESSVCFSVEETSEFASR 142
Query: 93 LHLHSFAVSARTG 105
L VSA TG
Sbjct: 143 LGCECIWVSAMTG 155
>gi|344293318|ref|XP_003418371.1| PREDICTED: ras-related protein Rab-27A-like [Loxodonta africana]
Length = 221
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ +SF ++ W+ ++ P V L NK D+E QRVV E +LA+
Sbjct: 96 LLLFDLTNEESFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEEQRVVKEEAAKELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|358338307|dbj|GAA56637.1| Ras-related protein Rab-6.2 [Clonorchis sinensis]
Length = 336
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDI +SF W+D R S + LV NK D+ +R VT E +LA
Sbjct: 191 VAVVVYDICVVESFQQTAKWIDDVRNERGSD--VIIMLVGNKTDLSDKRKVTTEEGERLA 248
Query: 91 QSLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQS 125
+ L++ SA+ G N + I +KYL S
Sbjct: 249 RDLNVMFIETSAKAG----YNVKVVAIPSVKYLVS 279
>gi|351700639|gb|EHB03558.1| Ras-related protein Rab-27A [Heterocephalus glaber]
Length = 220
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWITQLQMHAYCDNPDIV-LCGNKSDLEDQRVVKEEEARALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGVPYFETSAANGTN 169
>gi|123500553|ref|XP_001327882.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121910818|gb|EAY15659.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 196
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+TS S +I WV+ H + S P +V NK D+ ++++T E +LA S
Sbjct: 84 MIVFDLTSQTSVDNIKQWVEFVH--QHGSMP--FIIVGNKEDLVDEQIITPEEALELAFS 139
Query: 93 LHLHSFAVSARTGDNCWVNTRTPEINPLKY 122
+ FA SA+TG+N + R E ++Y
Sbjct: 140 VQSQFFATSAKTGNNVDLAFRQLECIAVEY 169
>gi|432864239|ref|XP_004070242.1| PREDICTED: ras and EF-hand domain-containing protein-like [Oryzias
latipes]
Length = 709
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDIT+ QSF ++ W+ + P + L+ NK D E +R V + +LA+
Sbjct: 598 VVVMYDITAEQSFTAVRQWLSSVKESANEEIP--IMLLGNKTDKEMERKVEKKMGERLAK 655
Query: 92 SLHLHSFAVSARTGDN 107
L F SA +G+N
Sbjct: 656 DCQLSVFECSAYSGEN 671
>gi|307104270|gb|EFN52525.1| GTP binding protein [Chlorella variabilis]
Length = 211
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YD+TS QSF +I WV+ R S + LV NK D+ +R V++E A
Sbjct: 86 VAVVVYDVTSRQSFLNIQRWVEEVRAERGSD--VIIVLVGNKTDLVDKRQVSIEEGDAKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 144 RELNVMFIETSAKAGFN 160
>gi|298712050|emb|CBJ32986.1| Rab8A, RAB family GTPase [Ectocarpus siliculosus]
Length = 205
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF+SI WV + + + L+ NK DM+ R V+ E A+LA
Sbjct: 87 ILLVYDVTDKKSFNSIRNWV--AQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAA 144
Query: 92 SLHLHSFAVSAR 103
+ F SA+
Sbjct: 145 EYGIQFFETSAK 156
>gi|156383846|ref|XP_001633043.1| predicted protein [Nematostella vectensis]
gi|156220108|gb|EDO40980.1| predicted protein [Nematostella vectensis]
Length = 200
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+ SF I W L ++ +S L+ NK D E +RV+ +R + +
Sbjct: 92 ILLVYDITTEDSFKHISQW--LQNIEDNASPNVCKVLLGNKLDAEDERVIDAQRGRSVGE 149
Query: 92 SLHLHSFAVSARTGDN 107
+L + SARTG+N
Sbjct: 150 DNNLEFYEASARTGEN 165
>gi|40225607|gb|AAH09227.2| RAB13 protein, partial [Homo sapiens]
Length = 195
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 76 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 133
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 134 EHGIRFFETSAKSSMN 149
>gi|342183893|emb|CCC93373.1| putative small GTPase [Trypanosoma congolense IL3000]
Length = 256
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YD+T G + + W+ L + + ANK D+E +R V+ E+ K A+
Sbjct: 86 AILVYDVTDGDTLEKVRLWI--RELRAVVGDQIQLVVCANKSDLEQEREVSEEKGRKFAK 143
Query: 92 SLHLHSFAVSARTGDN 107
S F+ SARTG N
Sbjct: 144 SHGAQHFSTSARTGMN 159
>gi|56790068|dbj|BAD82830.1| small GTPase EhRabF4 [Entamoeba histolytica]
Length = 211
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YD+T+ +F I W D K+ LV NK D +R+V+ E +LA+
Sbjct: 102 AVIVYDVTNRTTFEDIRGWYDEIF---KAEPDVVCMLVGNKADNNQERLVSSEEGEELAK 158
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+TGDN
Sbjct: 159 ELGILFSEASAKTGDN 174
>gi|449282941|gb|EMC89666.1| Ras-related protein Rab-27B [Columba livia]
Length = 218
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQ 91
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V ER AK LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLSDQREVN-ERQAKDLAD 153
Query: 92 SLHLHSFAVSARTG 105
+ F SA TG
Sbjct: 154 KYGIPYFETSAATG 167
>gi|340504136|gb|EGR30614.1| ras oncogene family protein, putative [Ichthyophthirius
multifiliis]
Length = 230
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + YD+T+ QSF ++ W++ R+ + LV NK DM+ +R + + +
Sbjct: 90 VAVVCYDVTNRQSFDNVTKWIEDVRNERRQEV--IICLVGNKTDMQDKRQIQYADGLQKS 147
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + F VSA +G+N
Sbjct: 148 KELDVKYFEVSALSGEN 164
>gi|328865734|gb|EGG14120.1| hypothetical protein DFA_11884 [Dictyostelium fasciculatum]
Length = 204
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 23 LGDPSCGKI----------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANK 72
LG CGK+ + +YDITS SF ++ W+ + S+ + ++ NK
Sbjct: 85 LGQERCGKLPTAYYRSADFIFVVYDITSNVSFTNLVGWLAAAQQPQISTVTPNILIIGNK 144
Query: 73 ------GDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108
G +R +T E+ K A L +SA GDNC
Sbjct: 145 LDLVKDGSSGRERAITFEQAQKFANQKGLQYLEISAFKGDNC 186
>gi|322794138|gb|EFZ17347.1| hypothetical protein SINV_09491 [Solenopsis invicta]
Length = 207
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ MYD+TS +SF+ + W L ++ +S L ANK D QR V ER K+A+
Sbjct: 84 ILLMYDVTSLESFNHLSYW--LRNIQENASPDVVKVLAANKCDATAQRAVDAERGQKIAE 141
Query: 92 SLHLHSFAVSARTGDN 107
+ + F VS + N
Sbjct: 142 NFDMPFFEVSCKENIN 157
>gi|50540122|ref|NP_001002530.1| ras-related protein Rab-3C [Danio rerio]
gi|49900849|gb|AAH76367.1| RAB3C, member RAS oncogene family [Danio rerio]
gi|182889398|gb|AAI65042.1| Rab3c protein [Danio rerio]
Length = 218
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF ++ W + S V L NK DME +R+V+++ LA+
Sbjct: 97 ILMYDITNEESFAAVQDWAT--QIKTYSWDNAQVILAGNKCDMEEERIVSVDSGRLLAEQ 154
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 155 LGFEFFETSAK 165
>gi|74834459|emb|CAI44552.1| rab_A61 [Paramecium tetraurelia]
Length = 211
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF S+ W + +++ + LV NK D++ +R V+ E LA+
Sbjct: 88 IIIVYDITDRESFDSVKMW--MSEIDKYAQEDVIRMLVGNKCDVDDKRAVSYEEGEALAK 145
Query: 92 SLHLHSFAVSARTGDN 107
L L SA+ N
Sbjct: 146 QLKLQFIETSAKLSTN 161
>gi|167524248|ref|XP_001746460.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775222|gb|EDQ88847.1| predicted protein [Monosiga brevicollis MX1]
Length = 214
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V+LE A
Sbjct: 93 VAVVVYDITNRNSFQQTSKWIDDVRAERGSDV--VIMLVGNKTDLNDKREVSLEEGEAKA 150
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 151 KELNVMFIETSAKAGHN 167
>gi|47217415|emb|CAG00775.1| unnamed protein product [Tetraodon nigroviridis]
Length = 294
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DM+ +RVV+ +R +LA
Sbjct: 173 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMDDERVVSGDRGRQLADH 230
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 231 LGFEFFEASAK 241
>gi|405123513|gb|AFR98277.1| Rab6 GTPase [Cryptococcus neoformans var. grubii H99]
Length = 210
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF + WVD R + LV NK D+ +R VT E K A
Sbjct: 93 VAVIVYDITNRTSFQNTSKWVDDVRNERGQDV--IIVLVGNKTDLNDKRQVTPEDLDKRA 150
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + S SA+ G N
Sbjct: 151 KELGVMSIETSAKAGHN 167
>gi|56967666|gb|AAW31982.1| CG2532 [Drosophila melanogaster]
gi|56967678|gb|AAW31988.1| CG2532 [Drosophila melanogaster]
Length = 174
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDITS +SF +I W L + R SS V LV NK D R V +E+ A
Sbjct: 83 ILLVYDITSSKSFRNIDGW--LKEIRRMSSENVNVMLVGNKCDDLDNRQVRMEQGFNYAN 140
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++G N
Sbjct: 141 HRALGFYEVSAKSGAN 156
>gi|242021638|ref|XP_002431251.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
gi|212516505|gb|EEB18513.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
Length = 211
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVAL-VANKGDMEHQRVVTLERHAKLA 90
+ +YDITS SF+++ TW+ + ++P V L V NK D+E +R VT +K A
Sbjct: 82 ALLVYDITSRDSFNALSTWL---SDTKTLASPNIVMLLVGNKKDLEKEREVTFLEASKFA 138
Query: 91 QSLHLHSFAVSARTGD 106
Q L SA++G+
Sbjct: 139 QENELMFLETSAKSGE 154
>gi|256073243|ref|XP_002572941.1| rab-related GTP-binding protein [Schistosoma mansoni]
gi|1016750|gb|AAA79138.1| rab-related GTP-binding protein [Schistosoma mansoni]
gi|353230960|emb|CCD77377.1| rab-related GTP-binding protein [Schistosoma mansoni]
Length = 205
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDITS Q+F ++ TW++ F L +S L+ANK DM H RVV+ E + A
Sbjct: 85 IMLIYDITSRQTFDNVQTWMNRTFSL---ASNEVEKLLIANKCDMAHNRVVSYEEGRQKA 141
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA++ N
Sbjct: 142 EEYGIGFLETSAKSSTN 158
>gi|410222046|gb|JAA08242.1| RAB13, member RAS oncogene family [Pan troglodytes]
Length = 203
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|406868470|gb|EKD21507.1| secretion related Rab/GTPase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 203
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + ++ L+ NK D E +RVV+ ER +LA
Sbjct: 86 ILLVYDVTDERSFNNIRTW--FSNVEQHATEGVNKILIGNKCDWEDRRVVSTERGQQLAD 143
Query: 92 SLHLHSFAVSART 104
L + VSA++
Sbjct: 144 ELGIPFLEVSAKS 156
>gi|115933362|ref|XP_793152.2| PREDICTED: ras-related protein Rab-37-like [Strongylocentrotus
purpuratus]
Length = 219
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ ++D+T+ QSF +I WV H ++ V L+ NK DM +RVV E KL +
Sbjct: 103 LLLLFDVTNRQSFENIRAWVGEIH--EYANDDVVVMLLGNKADMTSERVVKREEAEKLGR 160
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+TG N
Sbjct: 161 DNSIPYMETSAKTGLN 176
>gi|12843097|dbj|BAB25858.1| unnamed protein product [Mus musculus]
Length = 200
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+G+SF +I W L H++ ++ L+ NK DM+ +RVV + ++A+
Sbjct: 85 IMLVYDITNGKSFENISKW--LRHIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAR 142
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+ N
Sbjct: 143 EHGIRFFETSAKANIN 158
>gi|432871908|ref|XP_004072037.1| PREDICTED: ras-related protein Rab-3D-like [Oryzias latipes]
Length = 220
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDIT+ +SF+++ W + SS V LV NK DME R++T E +LA
Sbjct: 102 LLMYDITNQESFNAVRDWAT--QVQHYSSKNAQVILVGNKCDMEDDRLITREDGQRLADE 159
Query: 93 LHLHSFAVSAR 103
F SA+
Sbjct: 160 RGFLFFEASAK 170
>gi|66792866|ref|NP_001019711.1| ras-related protein Rab-13 [Bos taurus]
gi|75069879|sp|Q58DS5.1|RAB13_BOVIN RecName: Full=Ras-related protein Rab-13; Flags: Precursor
gi|61553216|gb|AAX46369.1| RAB13, member RAS oncogene family [Bos taurus]
Length = 203
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|393911156|gb|EFO14917.2| hypothetical protein LOAG_13598 [Loa loa]
Length = 212
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++DIT+ QSF +I W+ ++ TP + + NK D+E++R V+ R +LA
Sbjct: 93 ILIFDITNEQSFLNIRDWLSQLKIHAYCETPD-IIICGNKSDLENRRQVSTARAIQLADQ 151
Query: 93 LHLHSFAVSARTGDN 107
L L F SA + N
Sbjct: 152 LGLPYFETSAFSSTN 166
>gi|312098751|ref|XP_003149152.1| hypothetical protein LOAG_13598 [Loa loa]
Length = 188
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++DIT+ QSF +I W+ ++ TP + + NK D+E++R V+ R +LA
Sbjct: 69 ILIFDITNEQSFLNIRDWLSQLKIHAYCETPD-IIICGNKSDLENRRQVSTARAIQLADQ 127
Query: 93 LHLHSFAVSARTGDN 107
L L F SA + N
Sbjct: 128 LGLPYFETSAFSSTN 142
>gi|134118235|ref|XP_772218.1| hypothetical protein CNBM0510 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254827|gb|EAL17571.1| hypothetical protein CNBM0510 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 213
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF + WVD R + LV NK D+ +R VT E K A
Sbjct: 96 VAVIVYDITNRTSFQNTSKWVDDVRNERGQDV--IIVLVGNKTDLNDKRQVTPEDLDKRA 153
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + S SA+ G N
Sbjct: 154 KELGVMSIETSAKAGHN 170
>gi|390604985|gb|EIN14376.1| ras-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 208
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT S TW+ L R++ +AL NK D+ +R VT E K A+
Sbjct: 83 AVVVYDITQTASLEKARTWIR--ELQRQADPSIVIALCGNKIDLAARRQVTQEEAQKYAE 140
Query: 92 SLHLHSFAVSARTGD 106
L F SA+TG+
Sbjct: 141 EEGLLWFEASAKTGE 155
>gi|340505433|gb|EGR31760.1| ras oncogene family protein, putative [Ichthyophthirius
multifiliis]
Length = 223
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I +YD T+ SF ++ W+D ++ + + L+ANK D+ QR V+ E K A
Sbjct: 89 IIVYDTTNLSSFQNLNKWLD--YVREERGKDVLIVLLANKIDLADQRQVSTEDGNKFATE 146
Query: 93 LHLHSFAVSARTGDN 107
L F VSA+ G+N
Sbjct: 147 QGLLFFEVSAKDGNN 161
>gi|321264959|ref|XP_003197196.1| GTPase, Ras-like GTP binding protein; Ypt6p [Cryptococcus gattii
WM276]
gi|317463675|gb|ADV25409.1| GTPase, Ras-like GTP binding protein, putative; Ypt6p [Cryptococcus
gattii WM276]
Length = 211
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF + WVD R + LV NK D+ +R VT E K A
Sbjct: 94 VAVIVYDITNRTSFQNTSKWVDDVRNERGQDV--IIVLVGNKTDLNDKRQVTPEDLDKRA 151
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + S SA+ G N
Sbjct: 152 KELGVMSIETSAKAGHN 168
>gi|213410657|ref|XP_002176098.1| GTPase Ryh1 [Schizosaccharomyces japonicus yFS275]
gi|212004145|gb|EEB09805.1| GTPase Ryh1 [Schizosaccharomyces japonicus yFS275]
Length = 201
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I +YDIT+ SF + W+D R S + LV NK D+ +R V+LE + A
Sbjct: 86 VAIIVYDITNHNSFVNTEKWIDDVRAER--SDDVIIVLVGNKTDLAEKRQVSLEEGEQKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+ G N
Sbjct: 144 KELGIMHMETSAKAGYN 160
>gi|426216683|ref|XP_004002587.1| PREDICTED: ras-related protein Rab-13 [Ovis aries]
gi|81674373|gb|AAI09841.1| RAB13, member RAS oncogene family [Bos taurus]
gi|296489679|tpg|DAA31792.1| TPA: ras-related protein Rab-13 [Bos taurus]
Length = 203
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|114326367|ref|NP_001041595.1| ras-related protein Rab-27A [Canis lupus familiaris]
gi|116255984|sp|Q1HE58.1|RB27A_CANFA RecName: Full=Ras-related protein Rab-27A
gi|94982822|gb|ABF50191.1| RAS oncogene family member transcript variant 1 [Canis lupus
familiaris]
Length = 221
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEDARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|348533147|ref|XP_003454067.1| PREDICTED: ras-related protein Rab-37-like [Oreochromis niloticus]
Length = 228
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ ++ +YDITS SF +I W L ++ + + L+ NK DM +RVV E K
Sbjct: 109 AQALLLLYDITSKPSFDNIRAW--LTEIHEHAQKDVVIMLLGNKSDMAAERVVKTEDGEK 166
Query: 89 LAQSLHLHSFAVSARTGDN 107
LA+ + SA+TG N
Sbjct: 167 LAKEYGVPFMETSAKTGVN 185
>gi|426253848|ref|XP_004020603.1| PREDICTED: ras-related protein Rab-27B [Ovis aries]
Length = 218
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG +
Sbjct: 155 YSIPYFETSAATGQD 169
>gi|308490516|ref|XP_003107450.1| CRE-AEX-6 protein [Caenorhabditis remanei]
gi|308251818|gb|EFO95770.1| CRE-AEX-6 protein [Caenorhabditis remanei]
Length = 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++DIT+ QSF +I W+ ++ P + + NK D+E++R V+ R +LA
Sbjct: 93 ILIFDITNEQSFLNIRDWLSQLKVHAYCEQPDII-ICGNKADLENRRQVSTARAKQLADQ 151
Query: 93 LHLHSFAVSARTGDN 107
L L F SA T N
Sbjct: 152 LGLPYFETSASTAVN 166
>gi|354465202|ref|XP_003495069.1| PREDICTED: ras-related protein Rab-27A-like [Cricetulus griseus]
gi|344243771|gb|EGV99874.1| Ras-related protein Rab-27A [Cricetulus griseus]
Length = 221
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QR V E +LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRAVKEEEARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|8394142|ref|NP_059013.1| ras-related protein Rab-27A [Rattus norvegicus]
gi|131838|sp|P23640.1|RB27A_RAT RecName: Full=Ras-related protein Rab-27A; Short=Rab-27; AltName:
Full=GTP-binding protein Ram; AltName: Full=Ram p25
gi|452229|dbj|BAA04167.1| low Mr GTP-binding protein [Rattus sp.]
gi|68534738|gb|AAH98667.1| RAB27A, member RAS oncogene family [Rattus norvegicus]
gi|149028767|gb|EDL84108.1| RAB27A, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
gi|149028768|gb|EDL84109.1| RAB27A, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
gi|149028769|gb|EDL84110.1| RAB27A, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
gi|227333|prf||1702217A GTP binding protein ram
Length = 221
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QR V E +LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRAVKEEEARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|440296793|gb|ELP89554.1| rab6, putative [Entamoeba invadens IP1]
Length = 210
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++F YDIT ++ + W+ F + +T T L+ K D+E QR +T E A
Sbjct: 80 CILFTYDITKRETLEHVEDWMKEFCQVQPDTTKTLTVLIGCKSDLEEQRQITSEEGESFA 139
Query: 91 QSLHLHSFAVSARTGDN 107
+ + F SA+ N
Sbjct: 140 NTHQIPFFECSAKNNTN 156
>gi|449673442|ref|XP_004207959.1| PREDICTED: ras and EF-hand domain-containing protein homolog [Hydra
magnipapillata]
Length = 213
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM-----EHQRVVTLERH 86
+I M+D+TS SF ++ W + + + +AL+ +K DM +QR V E
Sbjct: 88 IIIMFDLTSETSFTNVKGW--MLSVEEGAEPDCVIALIGSKSDMVVGENNNQRKVNKEAA 145
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
K+A+ + F VSAR+G+N
Sbjct: 146 EKIAKDYNALYFEVSARSGEN 166
>gi|410971408|ref|XP_003992161.1| PREDICTED: uncharacterized protein LOC101087341 [Felis catus]
Length = 832
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 712 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 769
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 770 KELSVMFIETSAKTGYN 786
>gi|403221558|dbj|BAM39691.1| small GTPase [Theileria orientalis strain Shintoku]
Length = 212
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDI S QSF+++ W L LN +ALV NK D+ H R V+ E + A
Sbjct: 87 AIVVYDIASKQSFYNVSRW--LTELNEYGDPNMIIALVGNKSDLTHLREVSSEDGERYAH 144
Query: 92 SLHLHSFAVSARTGDN 107
S +L F S +N
Sbjct: 145 SNNLMFFETSCLNNEN 160
>gi|183233500|ref|XP_654217.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|169801546|gb|EAL48831.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449701817|gb|EMD42563.1| small GTPase EhRabF4, putative [Entamoeba histolytica KU27]
Length = 190
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YD+T+ +F I W D K+ LV NK D +R+V+ E +LA+
Sbjct: 81 AVIVYDVTNRTTFEDIRGWYDEIF---KAEPDVVCMLVGNKADNNQERLVSSEEGEELAK 137
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+TGDN
Sbjct: 138 ELGILFSEASAKTGDN 153
>gi|452819428|gb|EME26487.1| Rab family, other [Galdieria sulphuraria]
Length = 203
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ TW L ++R ++ LV NK D+ ++VV + A
Sbjct: 84 IIIVYDVTDQESFNNVKTW--LHEIDRYANESVNKLLVGNKNDLTTKKVVDTATAKEFAD 141
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+T +N
Sbjct: 142 SLGIKFLETSAKTSEN 157
>gi|118347152|ref|XP_001007053.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila]
gi|89288820|gb|EAR86808.1| small GTP-binding protein domain containing protein [Tetrahymena
thermophila SB210]
gi|307777854|dbj|BAJ21323.1| Rab-family small GTPase RabX1H [Tetrahymena thermophila]
Length = 174
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I+I +YDIT+ SF +I + + R+ + + +ALV NK D+ R V+ +L
Sbjct: 82 ILIMIYDITNRISFTNIQKYYGDYV--RQGNKKSIIALVGNKKDLNEYREVSFLEGQELG 139
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L ++ F VSA TG+N
Sbjct: 140 KQLGVYFFEVSAFTGENV 157
>gi|395840297|ref|XP_003792998.1| PREDICTED: ras-related protein Rab-27A-like [Otolemur garnettii]
Length = 221
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ + P V L NKGD+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWITQLQTHAYCEKPDIV-LCGNKGDLEDQRVVKKEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F S G N
Sbjct: 155 YGIPYFETSVANGTN 169
>gi|5036|emb|CAA27399.1| put. ras protein [Schizosaccharomyces pombe]
Length = 214
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 29 GKIVIFMYDITSGQSFHSIPT-WVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ + +Y+ITS SF I T + + + K + P V LVANK D+E +RVV+
Sbjct: 75 GEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFP--VVLVANKCDLEAERVVSRAEGE 132
Query: 88 KLAQSLHLHSFAVSAR 103
+LA+S+H SA+
Sbjct: 133 QLAKSMHCLYVETSAK 148
>gi|440892898|gb|ELR45890.1| Ras-related protein Rab-13, partial [Bos grunniens mutus]
Length = 205
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 86 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 143
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 144 EHGIRFFETSAKSSMN 159
>gi|76779772|gb|AAI06309.1| Rab3d protein [Xenopus laevis]
Length = 217
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDI++ +SF+++ W + S V LV NK D+E RV+ E KLA+
Sbjct: 99 LLMYDISNLESFNAVQDWAT--QIKTYSWDNAQVLLVGNKCDLEDDRVIAAEDGRKLAEE 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|444513620|gb|ELV10424.1| Ras-related protein Rab-6B [Tupaia chinensis]
Length = 357
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>gi|145496190|ref|XP_001434086.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831499|emb|CAI39317.1| rab_C12 [Paramecium tetraurelia]
gi|124401209|emb|CAK66689.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 26 PSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLER 85
+ G IV+ YDIT +S+ ++ W++ + + + + LV NKGD+E R V+
Sbjct: 78 SAAGAIVV--YDITKRESYENVARWME--EVKQNGNPKLSMLLVGNKGDLESDRQVSYNE 133
Query: 86 HAKLAQSLHLHSFAVSARTGDN 107
+ A+ + F SA+T +N
Sbjct: 134 AQQFAKECGIEFFETSAKTANN 155
>gi|54696266|gb|AAV38505.1| RAB13, member RAS oncogene family [synthetic construct]
gi|61365863|gb|AAX42775.1| RAB13 member RAS oncogene family [synthetic construct]
Length = 204
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|58261886|ref|XP_568353.1| hypothetical protein CNM00590 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230526|gb|AAW46836.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 213
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF + WVD R + LV NK D+ +R VT E K A
Sbjct: 96 VAVIVYDITNRTSFQNTSKWVDDVRNERGQDV--IIVLVGNKTDLNDKRQVTPEDLDKRA 153
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + S SA+ G N
Sbjct: 154 KELGVMSIETSAKAGHN 170
>gi|339262732|ref|XP_003367259.1| GTP-binding protein Ypt2 [Trichinella spiralis]
gi|316961994|gb|EFV48484.1| GTP-binding protein Ypt2 [Trichinella spiralis]
Length = 190
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 16/99 (16%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ ++D+T+ SF +W L + S ++ LV +K D++ +RVV + K+AQ
Sbjct: 90 VLLLFDLTNYDSFIRCRSW--LADVKENSLECAFICLVGSKLDLQGKRVVKFKEAIKMAQ 147
Query: 92 SLHLHSFAVSARTGDNCWVNTRTPEINPL-----KYLQS 125
+L S++TG+N +N L KYLQS
Sbjct: 148 DFNLSYIETSSKTGEN---------VNALFYITAKYLQS 177
>gi|61365868|gb|AAX42776.1| RAB13 member RAS oncogene family [synthetic construct]
Length = 204
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|356520251|ref|XP_003528777.1| PREDICTED: ras-related protein RABA3-like [Glycine max]
Length = 245
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT QSF + WV+ L + + + LV NK D+ QR+V E + A+
Sbjct: 109 MLVYDITKRQSFDHVARWVE--ELRAHADSSIVIMLVGNKADLVDQRMVPTEDAVEFAED 166
Query: 93 LHLHSFAVSARTGDN 107
L SA +GDN
Sbjct: 167 QGLFFSETSALSGDN 181
>gi|345571504|gb|EGX54318.1| hypothetical protein AOL_s00004g351 [Arthrobotrys oligospora ATCC
24927]
Length = 211
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ QSF + WVD R + LV NK D+ +R VT E K A
Sbjct: 91 VAVVVYDITNRQSFLNTSKWVDDVRGER--GNDVIIVLVGNKTDLNDKRQVTTEEGEKKA 148
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA+ G N
Sbjct: 149 KEFKVMFIETSAKAGHN 165
>gi|32401324|gb|AAP80834.1| GTP-binding protein [Griffithsia japonica]
Length = 154
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ +W L ++R +S LV NK DM ++VV E A
Sbjct: 84 IIIVYDVTDQESFNNVKSW--LQEIDRFASEHVCKLLVGNKNDMTSKKVVDTETAKNFAD 141
Query: 92 SLHLHSFAVSART 104
SL + SA+T
Sbjct: 142 SLGIKFLETSAKT 154
>gi|60826641|gb|AAX36766.1| RAB13 member RAS oncogene family [synthetic construct]
gi|60826676|gb|AAX36767.1| RAB13 member RAS oncogene family [synthetic construct]
Length = 204
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|5020094|gb|AAD38018.1|AF148210_1 GTPase Rab6 [Rattus norvegicus]
Length = 140
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 20 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 77
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 78 KELNVMFIETSAKAGYN 94
>gi|345569442|gb|EGX52308.1| hypothetical protein AOL_s00043g97 [Arthrobotrys oligospora ATCC
24927]
Length = 203
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + ++ L+ NK D E +RVV+ ER LA
Sbjct: 86 ILLVYDVTDERSFNNIQTWFQ--NVEQHATEGVNKILIGNKCDWEEKRVVSTERGQALAN 143
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA+ N
Sbjct: 144 ELGIPFMEVSAKANIN 159
>gi|429863036|gb|ELA37621.1| rab GTPase [Colletotrichum gloeosporioides Nara gc5]
Length = 202
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + ++ L+ NK D E +RVV+ E+ +LA
Sbjct: 86 ILLVYDVTDERSFNNIRTW--FANVEQHATEGVNKILIGNKCDWEEKRVVSTEKGQQLAD 143
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++ N
Sbjct: 144 ELGIPFLEVSAKSNIN 159
>gi|4506363|ref|NP_002861.1| ras-related protein Rab-13 isoform 1 [Homo sapiens]
gi|386782037|ref|NP_001248220.1| ras-related protein Rab-13 [Macaca mulatta]
gi|297663399|ref|XP_002810164.1| PREDICTED: ras-related protein Rab-13 [Pongo abelii]
gi|332220479|ref|XP_003259383.1| PREDICTED: ras-related protein Rab-13 [Nomascus leucogenys]
gi|332810355|ref|XP_522433.3| PREDICTED: ras-related protein Rab-13 [Pan troglodytes]
gi|397492531|ref|XP_003817175.1| PREDICTED: ras-related protein Rab-13 [Pan paniscus]
gi|402856334|ref|XP_003892746.1| PREDICTED: ras-related protein Rab-13 [Papio anubis]
gi|426331749|ref|XP_004026857.1| PREDICTED: ras-related protein Rab-13 [Gorilla gorilla gorilla]
gi|1710016|sp|P51153.1|RAB13_HUMAN RecName: Full=Ras-related protein Rab-13; AltName: Full=Cell
growth-inhibiting gene 4 protein; Flags: Precursor
gi|20379072|gb|AAM21096.1|AF498948_1 small GTP binding protein RAB13 [Homo sapiens]
gi|452320|emb|CAA53266.1| rab 13 [Homo sapiens]
gi|12654003|gb|AAH00799.1| RAB13, member RAS oncogene family [Homo sapiens]
gi|41350395|gb|AAS00485.1| growth-inhibiting gene 4 protein [Homo sapiens]
gi|54696268|gb|AAV38506.1| RAB13, member RAS oncogene family [Homo sapiens]
gi|54696270|gb|AAV38507.1| RAB13, member RAS oncogene family [Homo sapiens]
gi|61356004|gb|AAX41198.1| RAB13 member RAS oncogene family [synthetic construct]
gi|61356015|gb|AAX41199.1| RAB13 member RAS oncogene family [synthetic construct]
gi|68085671|gb|AAH73168.2| RAB13, member RAS oncogene family [Homo sapiens]
gi|117645128|emb|CAL38030.1| hypothetical protein [synthetic construct]
gi|117645354|emb|CAL38143.1| hypothetical protein [synthetic construct]
gi|117645750|emb|CAL38342.1| hypothetical protein [synthetic construct]
gi|117646294|emb|CAL38614.1| hypothetical protein [synthetic construct]
gi|117646436|emb|CAL38685.1| hypothetical protein [synthetic construct]
gi|117646828|emb|CAL37529.1| hypothetical protein [synthetic construct]
gi|119573633|gb|EAW53248.1| hCG1996054, isoform CRA_e [Homo sapiens]
gi|119573634|gb|EAW53249.1| hCG1996054, isoform CRA_e [Homo sapiens]
gi|119573635|gb|EAW53250.1| hCG1996054, isoform CRA_e [Homo sapiens]
gi|158256592|dbj|BAF84269.1| unnamed protein product [Homo sapiens]
gi|208967230|dbj|BAG73629.1| RAB13, member RAS oncogene family [synthetic construct]
gi|355558499|gb|EHH15279.1| hypothetical protein EGK_01346 [Macaca mulatta]
gi|380785379|gb|AFE64565.1| ras-related protein Rab-13 [Macaca mulatta]
gi|384942334|gb|AFI34772.1| ras-related protein Rab-13 [Macaca mulatta]
gi|740475|prf||2005309B rab13 GTPase
Length = 203
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|356559913|ref|XP_003548240.1| PREDICTED: ras-related protein RABA3-like [Glycine max]
Length = 244
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT QSF + WV+ L + + + LV NK D+ QR+V E + A+
Sbjct: 109 MLVYDITKRQSFDHVARWVE--ELRAHADSSIVIMLVGNKADLVDQRMVPTEDAVEFAED 166
Query: 93 LHLHSFAVSARTGDN 107
L SA +GDN
Sbjct: 167 QGLFFSETSALSGDN 181
>gi|440800473|gb|ELR21511.1| Rab GTPase, putative [Acanthamoeba castellanii str. Neff]
Length = 228
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS +S SIP W L +++ + V LV NK D+ R V++E K+A
Sbjct: 97 ALVVYDITSRESLDSIPKW--LEEIDKYCTQDVVVTLVGNKLDLSENRCVSVEEGKKVAA 154
Query: 92 SLHLHSFAVSARTGDN 107
++ SA+ N
Sbjct: 155 RENMFFIETSAKDATN 170
>gi|84043470|ref|XP_951525.1| small GTP-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348344|gb|AAQ15670.1| small GTP-binding protein RAB6, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358719|gb|AAX79175.1| small GTP-binding protein RAB6, putative [Trypanosoma brucei]
gi|261326389|emb|CBH09349.1| small GTP-binding protein RAB6, putative [Trypanosoma brucei
gambiense DAL972]
Length = 230
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDITS SF S W+D R +ALV NK D++ +R V+ + K A
Sbjct: 104 VVVYDITSRSSFLSTFKWIDEVRAARGDDV--IIALVGNKCDVQEKREVSADEAQKRADE 161
Query: 93 LHLHSFAVSARTGDN 107
L VSA+TG N
Sbjct: 162 NRLIFVEVSAKTGTN 176
>gi|145523367|ref|XP_001447522.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834407|emb|CAI44537.1| rab_B25 [Paramecium tetraurelia]
gi|124415033|emb|CAK80125.1| unnamed protein product [Paramecium tetraurelia]
Length = 209
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT+ QSF S+ W+ N + + ++ NK D++H R + E LAQ
Sbjct: 87 AVLVYDITNKQSFESVERWIQEVREN--ADKDIVIMIIGNKSDLKHLRAIRTESGQDLAQ 144
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+ G N
Sbjct: 145 MYKVAFMEASAQDGTN 160
>gi|388514165|gb|AFK45144.1| unknown [Lotus japonicus]
Length = 242
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT QSF + WV+ L + + + L+ NKGD QRVV E + A+
Sbjct: 104 MLVYDITKRQSFDHVARWVE--ELRAHADSSIVIMLIGNKGDFVDQRVVLSEDAVEFAEE 161
Query: 93 LHLHSFAVSARTGDN 107
L SA TG N
Sbjct: 162 QGLFFSETSALTGGN 176
>gi|299471595|emb|CBN76817.1| Rab2B, RAB family GTPase [Ectocarpus siliculosus]
Length = 203
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVTLERHAKLA 90
+ ++DIT +SF ++P W+D +N S+ P V L+ANK D+ +R VT E A
Sbjct: 81 CLLVFDITDRKSFEALPRWLDEARMN--SANPDLSVMLIANKADLAEKRCVTTEEGQAFA 138
Query: 91 QSLHLHSFAVSAR 103
L +SAR
Sbjct: 139 DKHGLLFMEMSAR 151
>gi|255581740|ref|XP_002531672.1| protein with unknown function [Ricinus communis]
gi|223528703|gb|EEF30716.1| protein with unknown function [Ricinus communis]
Length = 225
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I +YDIT Q+F IP W++ L + + LV NK D+E QRVV E + AQ
Sbjct: 94 ILVYDITKRQTFDHIPRWLE--ELRSHADKNIVIILVGNKCDLESQRVVPTEDAKEFAQK 151
Query: 93 LHLHSFAVSA 102
L SA
Sbjct: 152 EGLFFLETSA 161
>gi|427781617|gb|JAA56260.1| Putative rab27a member ras oncoprotein family [Rhipicephalus
pulchellus]
Length = 246
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+TS QSF SI +W++ + P V L NK D+E R VT ER A
Sbjct: 112 LVLFDLTSEQSFLSIRSWLEQLRTHAYCENPD-VVLCGNKADLEEGRAVTEERARAEAAK 170
Query: 93 LHLHSFAVSARTGDN 107
F SA TG N
Sbjct: 171 HGFPYFETSAATGHN 185
>gi|19114491|ref|NP_593579.1| GTPase Ras1 [Schizosaccharomyces pombe 972h-]
gi|3123259|sp|P08647.2|RAS_SCHPO RecName: Full=Ras-like protein 1; Flags: Precursor
gi|2330716|emb|CAB11218.1| GTPase Ras1 [Schizosaccharomyces pombe]
Length = 219
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 29 GKIVIFMYDITSGQSFHSIPT-WVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ + +Y+ITS SF I T + + + K + P V LVANK D+E +RVV+
Sbjct: 80 GEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFP--VVLVANKCDLEAERVVSRAEGE 137
Query: 88 KLAQSLHLHSFAVSAR 103
+LA+S+H SA+
Sbjct: 138 QLAKSMHCLYVETSAK 153
>gi|341885326|gb|EGT41261.1| hypothetical protein CAEBREN_28604 [Caenorhabditis brenneri]
gi|341903761|gb|EGT59696.1| hypothetical protein CAEBREN_04237 [Caenorhabditis brenneri]
Length = 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++DIT+ QSF +I W+ ++ P + + NK D+E++R V+ R +LA
Sbjct: 93 ILIFDITNEQSFLNIRDWLSQLKVHAYCEQPDII-ICGNKADLENRRQVSTARAKQLADQ 151
Query: 93 LHLHSFAVSARTGDN 107
L L F SA T N
Sbjct: 152 LGLPYFETSACTSTN 166
>gi|226478066|emb|CAX72726.1| RAB family [Schistosoma japonicum]
Length = 205
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDI + +SF W+D R S + LV NK D+ +R VT E +LA
Sbjct: 85 VAVVVYDICNAESFQLTSKWIDDVRNERGSD--VIIMLVGNKTDLSDKRTVTTEEGERLA 142
Query: 91 QSLHLHSFAVSARTGDNCWV 110
L++ SA+ G N V
Sbjct: 143 GQLNVMFIETSAKAGYNVKV 162
>gi|63102287|gb|AAH94846.1| RAB13 protein, partial [Homo sapiens]
Length = 244
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 125 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 182
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 183 EHGIRFFETSAKSSMN 198
>gi|56757515|gb|AAW26922.1| SJCHGC02777 protein [Schistosoma japonicum]
Length = 205
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDI + +SF W+D + + + + LV NK D+ +R VT E +LA
Sbjct: 85 VAVVVYDICNAESFQLTSKWID--DVRNERGSDVIIMLVGNKTDLSDKRTVTTEEGERLA 142
Query: 91 QSLHLHSFAVSARTGDNCWV 110
L++ SA+ G N V
Sbjct: 143 GQLNVMFIETSAKAGYNVKV 162
>gi|440790656|gb|ELR11936.1| Ras family protein [Acanthamoeba castellanii str. Neff]
Length = 228
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS +S SIP W L +++ + V LV NK D+ R V++E K+A
Sbjct: 97 ALVVYDITSRESLDSIPKW--LEEIDKYCTQDVVVTLVGNKLDLSENRCVSVEEGKKVAA 154
Query: 92 SLHLHSFAVSARTGDN 107
++ SA+ N
Sbjct: 155 RENMFFIETSAKDATN 170
>gi|399163163|gb|AFP33157.1| rab-27, partial [Caenorhabditis elegans]
Length = 214
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++DIT+ QSF +I W+ ++ P + + NK D+E++R V+ R +LA
Sbjct: 92 ILIFDITNEQSFLNIRDWLSQLKVHAYCEQPDII-ICGNKADLENRRQVSTARAKQLADQ 150
Query: 93 LHLHSFAVSARTGDN 107
L L F SA T N
Sbjct: 151 LGLPYFETSACTSTN 165
>gi|380795961|gb|AFE69856.1| ras-related protein Rab-27A, partial [Macaca mulatta]
Length = 201
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QR V E LA+
Sbjct: 76 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRAVKEEEAVALAEK 134
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 135 YGIPYFETSAANGTN 149
>gi|17510659|ref|NP_493376.1| Protein AEX-6 [Caenorhabditis elegans]
gi|5824857|emb|CAB54484.1| Protein AEX-6 [Caenorhabditis elegans]
gi|40788404|dbj|BAD07035.1| Rab27 [Caenorhabditis elegans]
Length = 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++DIT+ QSF +I W+ ++ P + + NK D+E++R V+ R +LA
Sbjct: 93 ILIFDITNEQSFLNIRDWLSQLKVHAYCEQPDII-ICGNKADLENRRQVSTARAKQLADQ 151
Query: 93 LHLHSFAVSARTGDN 107
L L F SA T N
Sbjct: 152 LGLPYFETSACTSTN 166
>gi|50927456|gb|AAH78662.1| RAB6B protein [Homo sapiens]
Length = 208
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + L NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLAGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>gi|145487073|ref|XP_001429542.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831315|emb|CAI39281.1| rab_B69 [Paramecium tetraurelia]
gi|124396635|emb|CAK62144.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
S G I++F D+TS QSF + W + + + +V NK D+E +R V E
Sbjct: 80 SIGGILVF--DVTSRQSFEDLQKWYQ--EIQGYACDKIEMVIVGNKIDLEERREVKTEEA 135
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
+ AQ F SA+TG+N
Sbjct: 136 RRYAQKQGFAYFETSAKTGEN 156
>gi|13128964|ref|NP_076124.1| ras-related protein Rab-27A [Mus musculus]
gi|20178060|sp|Q9ERI2.1|RB27A_MOUSE RecName: Full=Ras-related protein Rab-27A
gi|10945661|gb|AAG24638.1| RAB27A [Mus musculus]
gi|12845770|dbj|BAB26891.1| unnamed protein product [Mus musculus]
gi|14198228|gb|AAH08173.1| Rab27a protein [Mus musculus]
gi|15054454|dbj|BAB62313.1| Rab27A [Mus musculus]
gi|16307138|gb|AAH09656.1| RAB27A, member RAS oncogene family [Mus musculus]
gi|26326523|dbj|BAC27005.1| unnamed protein product [Mus musculus]
gi|34850465|dbj|BAC87831.1| Rab27A [Mus musculus]
gi|112293013|dbj|BAF02884.1| Rab27A [Mus musculus]
gi|148694338|gb|EDL26285.1| RAB27A, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|148694339|gb|EDL26286.1| RAB27A, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|148694340|gb|EDL26287.1| RAB27A, member RAS oncogene family, isoform CRA_a [Mus musculus]
Length = 221
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QR V E +LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRAVKEEEARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|338725027|ref|XP_003365067.1| PREDICTED: ras-related protein Rab-13-like [Equus caballus]
Length = 203
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|226478016|emb|CAX72701.1| RAB family [Schistosoma japonicum]
Length = 205
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDI + +SF W+D R S + LV NK D+ +R VT E +LA
Sbjct: 85 VAVVVYDICNAESFQLTSKWIDDVRNERGSD--VIIMLVGNKTDLSDKRTVTTEEGERLA 142
Query: 91 QSLHLHSFAVSARTGDNCWV 110
L++ SA+ G N V
Sbjct: 143 GQLNVMFIETSAKAGYNVKV 162
>gi|348522973|ref|XP_003448998.1| PREDICTED: ras-related protein Rab-1A-like [Oreochromis niloticus]
Length = 212
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W+D ++R + LV NK D+ ++VV LA
Sbjct: 84 IIIVYDVTEQESFNNVKQWLD--EIDRYACENVSRLLVGNKSDLVSKKVVDAATAQDLAS 141
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA++ DN
Sbjct: 142 SLKIPFLETSAKSSDN 157
>gi|226478096|emb|CAX72741.1| RAB family [Schistosoma japonicum]
gi|226478548|emb|CAX72769.1| RAB family [Schistosoma japonicum]
gi|257206356|emb|CAX82829.1| RAB family [Schistosoma japonicum]
gi|257206638|emb|CAX82947.1| RAB family [Schistosoma japonicum]
Length = 205
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDI + +SF W+D R S + LV NK D+ +R VT E +LA
Sbjct: 85 VAVVVYDICNAESFQLTSKWIDDVRNERGSD--VIIMLVGNKTDLSDKRTVTTEEGERLA 142
Query: 91 QSLHLHSFAVSARTGDNCWV 110
L++ SA+ G N V
Sbjct: 143 GQLNVMFIETSAKAGYNVKV 162
>gi|443689406|gb|ELT91802.1| hypothetical protein CAPTEDRAFT_169557 [Capitella teleta]
Length = 213
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R T + LV NK D+ +R V+ E + A
Sbjct: 88 VAVVVYDITNANSFQQTSKWIDDVRTER--GTDVIIMLVGNKTDLSDKRQVSTEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+ G N
Sbjct: 146 KELGVMFIETSAKAGYN 162
>gi|351704867|gb|EHB07786.1| Ras-related protein Rab-13 [Heterocephalus glaber]
Length = 206
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V ER +LA+
Sbjct: 88 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEARRKVQWERADQLAR 145
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 146 EHGIRFFETSAKSSVN 161
>gi|229367302|gb|ACQ58631.1| Ras-related protein Rab-6B [Anoplopoma fimbria]
Length = 208
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W++ R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNVSSFQQTSKWIEDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>gi|256078263|ref|XP_002575416.1| rab5 [Schistosoma mansoni]
gi|353230409|emb|CCD76580.1| putative rab5 [Schistosoma mansoni]
Length = 198
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ + +YDIT+ SF +W++ L K++T +AL NK D+E QR V+ E +
Sbjct: 81 AQAAVVVYDITNQNSFERAKSWIN--ELQEKANTSGVIALAGNKVDLEGQRAVSFEEAQE 138
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+ N
Sbjct: 139 YADKNRLLFMETSAKISTN 157
>gi|123708078|ref|NP_001074105.1| multiple EGF-like-domains 8 [Danio rerio]
gi|120537782|gb|AAI29422.1| Zgc:158741 [Danio rerio]
gi|182891058|gb|AAI64972.1| Zgc:158741 protein [Danio rerio]
Length = 184
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDITS +SF +I W+ ++ +S+ ++ NK DM +R V+ ER KLA
Sbjct: 84 IMLVYDITSEKSFENIKNWIR--NIEEHASSDVEKMILGNKCDMNERRQVSKERGEKLAI 141
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+T N
Sbjct: 142 DYGIKFLETSAKTSIN 157
>gi|410902081|ref|XP_003964523.1| PREDICTED: ras-related protein Rab-37-like [Takifugu rubripes]
Length = 229
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ ++ +YDITS SF +I W+ H + + L+ NK DM +R V E K
Sbjct: 109 AQALLLLYDITSKTSFDNIRAWLTEIH--EYAQKEVVIMLLGNKSDMAAERAVKTEEGEK 166
Query: 89 LAQSLHLHSFAVSARTGDN 107
LA+ + SA+TG N
Sbjct: 167 LAKEYGVPFMETSAKTGVN 185
>gi|213511948|ref|NP_001133667.1| Ras-related protein Rab-3D [Salmo salar]
gi|209154872|gb|ACI33668.1| Ras-related protein Rab-3D [Salmo salar]
Length = 224
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDIT+ SF+++ W + S V LV NK D+E R+V E +LA
Sbjct: 105 LLMYDITNQDSFYAVQDWAT--QIKTYSWDNAQVILVGNKADLEDDRLVPAEDGQRLADE 162
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 163 LGFQFFEASAK 173
>gi|403302550|ref|XP_003941919.1| PREDICTED: ras-related protein Rab-13 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQANKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|29789271|ref|NP_112354.1| ras-related protein Rab-13 [Rattus norvegicus]
gi|46577668|sp|P35286.2|RAB13_RAT RecName: Full=Ras-related protein Rab-13; Flags: Precursor
gi|21952483|gb|AAM82588.1|AF525280_1 GTP-binding protein RAB13 [Rattus norvegicus]
gi|149048004|gb|EDM00580.1| RAB13, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
Length = 203
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ +LA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQREQAERLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHRIRFFETSAKSSVN 157
>gi|71665398|ref|XP_819669.1| small GTP-binding protein Rab28 [Trypanosoma cruzi strain CL
Brener]
gi|70884981|gb|EAN97818.1| small GTP-binding protein Rab28, putative [Trypanosoma cruzi]
Length = 229
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVD---LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
V F+YD+T+ SF + W N + P V LV NK D+ + R VT + HAK
Sbjct: 91 VCFVYDVTNPVSFKDVEDWRQSLLALQGNGEGRKPLMV-LVGNKTDLPN-RQVTADMHAK 148
Query: 89 LAQSLHLHSFAVSARTGD 106
A + + S +SAR+GD
Sbjct: 149 AASAYDMESILISARSGD 166
>gi|339235967|ref|XP_003379538.1| GTP-binding protein yptV4 [Trichinella spiralis]
gi|316977780|gb|EFV60837.1| GTP-binding protein yptV4 [Trichinella spiralis]
Length = 375
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT QSF++I W L +S V L+ NK D+E +R VT ++ AQ
Sbjct: 85 LLVYDITCRQSFNAIAQW--LSDARSLASPQIIVILIGNKKDLEDRREVTFMEGSQFAQE 142
Query: 93 LHLHSFAVSARTGDN 107
+ SA TG+N
Sbjct: 143 NGMLFLETSALTGEN 157
>gi|294942675|ref|XP_002783640.1| rab6, putative [Perkinsus marinus ATCC 50983]
gi|239896142|gb|EER15436.1| rab6, putative [Perkinsus marinus ATCC 50983]
Length = 392
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+TS +SF+S+ +W + + + + + LV NK DM R V+ E LA
Sbjct: 272 VVVFDLTSEESFNSVRSW--MSQVEDEKGSGVKIVLVGNKADMADSRQVSGEEARALAGE 329
Query: 93 LHLHSFAVSARTG 105
L + F SA++G
Sbjct: 330 LGVRYFETSAKSG 342
>gi|440801319|gb|ELR22339.1| RAB8D, putative [Acanthamoeba castellanii str. Neff]
Length = 223
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ ++D+TS QSF S+ +W + ++ + LV NK D+ +R V ++ LA+
Sbjct: 83 VMLVFDLTSAQSFTSVRSW--MRNITEYAGKDILKVLVGNKCDLAEKRAVPADKCEALAK 140
Query: 92 SLHLHSFAVSARTGDN 107
+ F VSA+ G N
Sbjct: 141 EYDIPYFEVSAKAGTN 156
>gi|311254230|ref|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus scrofa]
Length = 203
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|302564361|ref|NP_001180784.1| ras-related protein Rab-27A [Macaca mulatta]
gi|109081224|ref|XP_001089429.1| PREDICTED: ras-related protein Rab-27A-like isoform 2 [Macaca
mulatta]
gi|355692732|gb|EHH27335.1| Ras-related protein Rab-27A [Macaca mulatta]
gi|355778060|gb|EHH63096.1| Ras-related protein Rab-27A [Macaca fascicularis]
gi|383414485|gb|AFH30456.1| ras-related protein Rab-27A [Macaca mulatta]
gi|384940718|gb|AFI33964.1| ras-related protein Rab-27A [Macaca mulatta]
gi|387541138|gb|AFJ71196.1| ras-related protein Rab-27A [Macaca mulatta]
Length = 221
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QR V E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRAVKEEEAVALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|145488569|ref|XP_001430288.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831445|emb|CAI39307.1| rab_C39 [Paramecium tetraurelia]
gi|124397385|emb|CAK62890.1| unnamed protein product [Paramecium tetraurelia]
Length = 210
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++D+TS QSF + W + + + + +V NK D+E QR V+ + + A+
Sbjct: 80 ILVFDVTSRQSFQGLVQWYE--KIQSYACDEIELIIVGNKTDLEEQRQVSQKEGMQFAKQ 137
Query: 93 LHLHSFAVSARTGDN---------CWV--NTRTPEINPLK 121
+ F SA+TG N C + + EI+P K
Sbjct: 138 YNFEYFETSAKTGLNVNQVFENLSCKILQKVNSGEIDPCK 177
>gi|359320911|ref|XP_003639460.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-44 [Canis
lupus familiaris]
Length = 715
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVA--LVANKGDMEHQRVVTLERHAKL 89
V+ MYDITS +SF + W++ + S P VA L+ NK D E +R V +E +L
Sbjct: 603 VVLMYDITSQESFAHVRYWLNCL----QESGPNGVAILLLGNKTDREEERQVPIEAGQQL 658
Query: 90 AQSLHLHSFAVSARTGDN 107
AQ L + SA G N
Sbjct: 659 AQELGVSFGECSAALGHN 676
>gi|318054582|ref|NP_001187853.1| ras-related protein Rab-6B [Ictalurus punctatus]
gi|308324148|gb|ADO29209.1| ras-related protein rab-6b [Ictalurus punctatus]
Length = 208
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YD+T+ SF W++ R S + LV NK D+E +R + +E + A
Sbjct: 88 VAVVVYDVTNVNSFQLTSKWIEDVRTERGSDV--IIMLVGNKTDLEEKRQILVEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 146 KELNVMFIETSAKTGTN 162
>gi|260942787|ref|XP_002615692.1| hypothetical protein CLUG_04574 [Clavispora lusitaniae ATCC 42720]
gi|238850982|gb|EEQ40446.1| hypothetical protein CLUG_04574 [Clavispora lusitaniae ATCC 42720]
Length = 204
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T ++F ++ W + + ++ + LV NK D E R V+ E+ +LA
Sbjct: 89 IVLIYDVTDARTFENVENWFQT--VTQHANEDAQIFLVGNKSDDEENRQVSREQGQQLAS 146
Query: 92 SLHLHSFAVSARTGDN 107
SL++ SA+T +N
Sbjct: 147 SLNIPFLEASAKTNEN 162
>gi|326680391|ref|XP_003201512.1| PREDICTED: ras-related protein Rab-8B-like, partial [Danio rerio]
Length = 165
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDITS +SF +I W+ ++ +S+ ++ NK DM +R V+ ER KLA
Sbjct: 42 IMLVYDITSEKSFENIKNWIR--NIEEHASSDVEKMILGNKCDMNERRQVSKERGEKLAI 99
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+T N
Sbjct: 100 DYGIKFLETSAKTSIN 115
>gi|123224924|ref|XP_001285722.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121849845|gb|EAX72792.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 190
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++D+T+ SF + WV H N ++ V + NK D+E+ R+++ E +LA
Sbjct: 82 VAIVVFDVTNKDSFEQVSGWVSELHEN---TSNAIVCICGNKIDLEN-RIISTESAKELA 137
Query: 91 QSLHLHSFAVSARTGD 106
+L+L + SA TG+
Sbjct: 138 NNLNLSYYETSAATGE 153
>gi|67463254|ref|XP_648284.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56464378|gb|EAL42896.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|56790176|dbj|BAD82884.1| small GTPase EhRabK4 [Entamoeba histolytica]
gi|449706357|gb|EMD46219.1| small GTPase EhRabK4, putative [Entamoeba histolytica KU27]
Length = 238
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+F +DIT ++F+ I W+ + + L+ KGD+ +R V+ E A+
Sbjct: 86 VLFCFDITKKETFNCIDMWIQEYEQAQTLKDLAARYLIGCKGDLASKREVSREEAESYAK 145
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+TGDN
Sbjct: 146 TKNMTYLECSAKTGDN 161
>gi|427778945|gb|JAA54924.1| Putative rab27a member ras oncoprotein family [Rhipicephalus
pulchellus]
Length = 264
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+TS QSF SI +W++ + P V L NK D+E R VT ER A
Sbjct: 130 LVLFDLTSEQSFLSIRSWLEQLRTHAYCENPD-VVLCGNKADLEEGRAVTEERARAEAAK 188
Query: 93 LHLHSFAVSARTGDN 107
F SA TG N
Sbjct: 189 HGFPYFETSAATGHN 203
>gi|72165047|ref|XP_783878.1| PREDICTED: ras-related protein Rab-5B-like [Strongylocentrotus
purpuratus]
Length = 216
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
+ I +YDIT+ ++F TWV L R++S +AL NK D+ ++R+V E
Sbjct: 93 QAAIVVYDITNQETFGRAKTWVK--ELQRQASPNIVIALAGNKADLANKRMVEFEEAQAY 150
Query: 90 AQSLHLHSFAVSARTGDN 107
A+ L SA+T N
Sbjct: 151 AEENSLLFMETSAKTAMN 168
>gi|402874376|ref|XP_003901015.1| PREDICTED: ras-related protein Rab-27A isoform 1 [Papio anubis]
gi|402874378|ref|XP_003901016.1| PREDICTED: ras-related protein Rab-27A isoform 2 [Papio anubis]
gi|402874380|ref|XP_003901017.1| PREDICTED: ras-related protein Rab-27A isoform 3 [Papio anubis]
gi|402874382|ref|XP_003901018.1| PREDICTED: ras-related protein Rab-27A isoform 4 [Papio anubis]
Length = 221
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QR V E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRAVKEEEAVALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|298705900|emb|CBJ29030.1| Rab5, RAB family GTPase [Ectocarpus siliculosus]
Length = 195
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YD+T+ +SF+ +WV L R+ +AL NK D+EH+R V E A+
Sbjct: 84 AIVVYDVTNKESFNGAKSWVK--ELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAE 141
Query: 92 SLHLHSFAVSARTGDN 107
L SA++ N
Sbjct: 142 DNGLIHMETSAKSAQN 157
>gi|256073245|ref|XP_002572942.1| rab-related GTP-binding protein [Schistosoma mansoni]
gi|353230961|emb|CCD77378.1| rab-related GTP-binding protein [Schistosoma mansoni]
Length = 146
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDITS Q+F ++ TW++ F L +S L+ANK DM H RVV+ E + A
Sbjct: 26 IMLIYDITSRQTFDNVQTWMNRTFSL---ASNEVEKLLIANKCDMAHNRVVSYEEGRQKA 82
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA++ N
Sbjct: 83 EEYGIGFLETSAKSSTN 99
>gi|126327867|ref|XP_001363218.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Monodelphis
domestica]
Length = 208
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|449296903|gb|EMC92922.1| hypothetical protein BAUCODRAFT_151311 [Baudoinia compniacensis
UAMH 10762]
Length = 208
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF++I TW ++ + +S L+ NK D E +R V+ E+ +LA
Sbjct: 86 ILLVYDVTDEKSFNNIRTWFS--NVEQHASEGVNKILIGNKCDWEEKRAVSTEQGQQLAN 143
Query: 92 SLHLHSFAVSARTGDN 107
L++ VSA++ N
Sbjct: 144 ELNIPFMEVSAKSNIN 159
>gi|390597749|gb|EIN07148.1| GTP binding protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 214
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ I ++DIT+ SF S W+D R + + LV NK D+ +R VTLE +
Sbjct: 94 VAIVVFDITNRASFLSTSKWIDDVRSERGNDV--IIVLVGNKADLSDKRQVTLEEATTKS 151
Query: 91 QSLHLHSFAVSARTGDN 107
Q +++ SA+ G N
Sbjct: 152 QEMNVMFMETSAKAGHN 168
>gi|148684516|gb|EDL16463.1| RAB6, member RAS oncogene family, isoform CRA_b [Mus musculus]
gi|149068774|gb|EDM18326.1| rCG39700, isoform CRA_c [Rattus norvegicus]
Length = 175
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 55 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 112
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 113 KELNVMFIETSAKAGYN 129
>gi|123407029|ref|XP_001302917.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736262|gb|AAX97460.1| small Rab GTPase RabA4 [Trichomonas vaginalis]
gi|121884251|gb|EAX89987.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 196
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI ++D+T ++F + +W L+ ++ + L+ NK D+ RV++L AQ
Sbjct: 82 VILVFDLTERKTFEDLSSW--LYDVHTLCDPNCVIQLIGNKSDLADNRVISLAEADAFAQ 139
Query: 92 SLHLHSFAVSARTG 105
H+H SA++G
Sbjct: 140 RNHMHYLEASAKSG 153
>gi|313239407|emb|CBY14345.1| unnamed protein product [Oikopleura dioica]
Length = 210
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YD+T+ SF+ W+D R T + LV NK D+ +R V+++ + A
Sbjct: 87 VAVVVYDVTNINSFNQTNKWIDDVRTER--GTDVIIVLVGNKTDLADKRQVSIDEGERKA 144
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+TG N
Sbjct: 145 KELNVMFIETSAKTGYN 161
>gi|289743331|gb|ADD20413.1| Rab protein 5 [Glossina morsitans morsitans]
Length = 222
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDI + SF TWV H +++S +AL NK D+ + RVV E +
Sbjct: 104 AQAAIVVYDIQNQDSFQRATTWVKELH--KQASPNIVIALAGNKADLSNIRVVEYEEAKQ 161
Query: 89 LAQSLHLHSFAVSARTGDN 107
A+ L SA+TG N
Sbjct: 162 YAEENGLLFMETSAKTGMN 180
>gi|167013419|pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
gi|167013420|pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
gi|167013421|pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 91 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 148
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 149 KELNVMFIETSAKAGYNV 166
>gi|156403714|ref|XP_001640053.1| predicted protein [Nematostella vectensis]
gi|156227185|gb|EDO47990.1| predicted protein [Nematostella vectensis]
Length = 215
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 20/114 (17%)
Query: 32 VIFMYDITSGQSFHSIPTWV-DLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YD+T+ SF +I W+ +++ R+ + L+ANK D+ QRVV+ ++ KLA
Sbjct: 99 LLLLYDVTNHASFENIRAWLAEIYEYARQD---VIIMLLANKADLTKQRVVSRDQGEKLA 155
Query: 91 QSLHLHSFAVSARTGDNCWV----------------NTRTPEINPLKYLQSNNE 128
+ ++ SA+TG N + T P+ N +Y++S E
Sbjct: 156 KDHNVAFMETSAKTGLNVDLAFMAIARDIKHREANSTTADPQFNIGQYVESQRE 209
>gi|318037408|ref|NP_001187761.1| ras-related protein rab-27b [Ictalurus punctatus]
gi|308323905|gb|ADO29088.1| ras-related protein rab-27b [Ictalurus punctatus]
Length = 225
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V ++ +LA
Sbjct: 103 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLADQREVQEKQAKELADK 161
Query: 93 LHLHSFAVSARTG 105
+ F SA TG
Sbjct: 162 YGIPYFETSAATG 174
>gi|74833768|emb|CAI39352.1| rab_B72 [Paramecium tetraurelia]
Length = 233
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 21 VLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV 80
+ + + S +IF Y I + SF S+ W+++ L + SS +VA D+E +R
Sbjct: 95 IYISNFSAAAAIIF-YKIDNQDSFKSLDNWINI--LKQVSSDKIQTVIVATHKDLEEKRQ 151
Query: 81 VTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSN 126
V E+ KLA S+ F +S + D V T N L+ + S+
Sbjct: 152 VETEQGRKLADSIGAKFFEISNQDKDQIDVIVNTLSFNVLRLISSS 197
>gi|20071543|gb|AAH26915.1| Rab6 protein, partial [Mus musculus]
Length = 184
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 64 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 121
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 122 KELNVMFIETSAKAGYN 138
>gi|296478104|tpg|DAA20219.1| TPA: RAB27A-like [Bos taurus]
Length = 221
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEVRGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGVPYFETSAANGTN 169
>gi|401827320|ref|XP_003887752.1| Rab5-like GTPase [Encephalitozoon hellem ATCC 50504]
gi|392998759|gb|AFM98771.1| Rab5-like GTPase [Encephalitozoon hellem ATCC 50504]
Length = 197
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
++ + +YDITS +SF + WV+ L + L+ NK D+E R V ++ +
Sbjct: 85 AQVALIVYDITSAESFETAKRWVE--ELGFEKPKEFIKVLIGNKSDLESDRRVEYQQGKE 142
Query: 89 LAQSLHLHSFAVSARTG 105
A S +L F SA+TG
Sbjct: 143 YADSHNLLFFESSAKTG 159
>gi|348675760|gb|EGZ15578.1| hypothetical protein PHYSODRAFT_354794 [Phytophthora sojae]
Length = 203
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+TS +SF + W++ +NR +S T LV NK D+ + V+ E A
Sbjct: 84 IIMVYDVTSQESFDHVNDWLN--EVNRYASEGTCKLLVGNKSDISDNKAVSYETAKAFAD 141
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 142 SLSIPFLETSAKNAQN 157
>gi|229596300|ref|XP_001011511.3| Ras family protein [Tetrahymena thermophila]
gi|225565488|gb|EAR91266.3| Ras family protein [Tetrahymena thermophila SB210]
gi|307777758|dbj|BAJ21275.1| Rab-family small GTPase Rab1B [Tetrahymena thermophila]
Length = 212
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T SF ++ TW + + + + L+ NK D+ +RVV+ E +LA
Sbjct: 92 IVVVYDVTDKLSFENVKTW--MSEIEKYAQENVCKLLIGNKSDLSDKRVVSTEEGQQLAS 149
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ +N
Sbjct: 150 SLKIKFIETSAKNSNN 165
>gi|195133854|ref|XP_002011354.1| GI16485 [Drosophila mojavensis]
gi|193907329|gb|EDW06196.1| GI16485 [Drosophila mojavensis]
Length = 228
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+TS +SF I W++ ++ + P V L NK D+ RVV+ E+ A LAQ
Sbjct: 92 LLIFDLTSQKSFLEITNWLEQLRMHAYTEDPD-VVLCGNKCDLLQLRVVSREQVAALAQR 150
Query: 93 LHLHSFAVSARTGDN 107
L SA TG N
Sbjct: 151 YRLPYIETSACTGAN 165
>gi|432101411|gb|ELK29593.1| Ras-related protein Rab-27B [Myotis davidii]
Length = 218
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG +
Sbjct: 155 YSIPYFETSAATGQD 169
>gi|83751822|gb|ABC42924.1| GTP-binding protein [Anas platyrhynchos]
Length = 208
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|145536742|ref|XP_001454093.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833739|emb|CAI39340.1| rab_B31 [Paramecium tetraurelia]
gi|124421837|emb|CAK86696.1| unnamed protein product [Paramecium tetraurelia]
Length = 218
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 24/123 (19%)
Query: 32 VIFMYDITSGQSFHSIPTW----VDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
V+ ++DIT+ QSFH+I W +D H + +V NK D+E++R V+ +
Sbjct: 83 VLLVFDITNRQSFHNIVRWYNEILDCAH------EYVDIVIVGNKIDLENERQVSADEGR 136
Query: 88 KLAQSLHLHSFAVSARTGDNCWVNT-------RTPEINPLKYLQSNNEYNFLSMVGFEAG 140
A+ +H SA+TG +V++ R E K + NNE +G + G
Sbjct: 137 LFAEQHRIHYIETSAKTGQ--YVDSVFQQMAMRIYEKIENKLVDQNNE-----NLGIKLG 189
Query: 141 TFY 143
TFY
Sbjct: 190 TFY 192
>gi|13195674|ref|NP_077249.1| ras-related protein Rab-6A isoform 2 [Mus musculus]
gi|13638404|sp|P35279.4|RAB6A_MOUSE RecName: Full=Ras-related protein Rab-6A; Short=Rab-6
gi|313104164|sp|Q9WVB1.2|RAB6A_RAT RecName: Full=Ras-related protein Rab-6A; Short=Rab-6
gi|7670415|dbj|BAA95059.1| unnamed protein product [Mus musculus]
gi|26341820|dbj|BAC34572.1| unnamed protein product [Mus musculus]
gi|26350389|dbj|BAC38834.1| unnamed protein product [Mus musculus]
gi|26350969|dbj|BAC39121.1| unnamed protein product [Mus musculus]
gi|74144412|dbj|BAE36058.1| unnamed protein product [Mus musculus]
gi|74146903|dbj|BAE41406.1| unnamed protein product [Mus musculus]
gi|74227574|dbj|BAE35649.1| unnamed protein product [Mus musculus]
gi|112292961|dbj|BAF02858.1| Rab6A [Mus musculus]
gi|148684515|gb|EDL16462.1| RAB6, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|148684520|gb|EDL16467.1| RAB6, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|149068773|gb|EDM18325.1| rCG39700, isoform CRA_b [Rattus norvegicus]
gi|149068775|gb|EDM18327.1| rCG39700, isoform CRA_b [Rattus norvegicus]
Length = 208
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|256078265|ref|XP_002575417.1| rab5 [Schistosoma mansoni]
gi|353230408|emb|CCD76579.1| putative rab5 [Schistosoma mansoni]
Length = 179
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ + +YDIT+ SF +W++ L K++T +AL NK D+E QR V+ E +
Sbjct: 81 AQAAVVVYDITNQNSFERAKSWIN--ELQEKANTSGVIALAGNKVDLEGQRAVSFEEAQE 138
Query: 89 LAQSLHLHSFAVSARTGDNC 108
A L SA+ N
Sbjct: 139 YADKNRLLFMETSAKISTNV 158
>gi|221042816|dbj|BAH13085.1| unnamed protein product [Homo sapiens]
Length = 144
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 34 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 91
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 92 KELNVMFIETSAKAGYNV 109
>gi|403223777|dbj|BAM41907.1| Rab GTPase [Theileria orientalis strain Shintoku]
Length = 210
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T SF I W L +N+ +S T L+ NK D+E R V +L++
Sbjct: 88 IIMVYDVTDKASFEHINDW--LNEVNKYASEDTCKLLLGNKCDIEDNRDVASTDVERLSE 145
Query: 92 SLHLHSFAVSARTGDN 107
+ + + VSA+TG N
Sbjct: 146 VIEVPAMEVSAKTGHN 161
>gi|345322815|ref|XP_003430635.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-10-like
[Ornithorhynchus anatinus]
Length = 200
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+G+SF +I W L +++ ++ L+ NK DME +RVV + ++A+
Sbjct: 85 IMLVYDITNGKSFENISKW--LRNIDEHANEDVERMLLGNKCDMEDKRVVLKTKGEQIAK 142
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+ N
Sbjct: 143 EHGIRFFETSAKANIN 158
>gi|325303414|tpg|DAA34126.1| TPA_exp: Rab5-related subfamily protein 481 [Amblyomma variegatum]
Length = 179
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +F TWV L R++S +AL NK D+ QR V LE
Sbjct: 94 AQAAIVVYDITNQDTFGRAKTWVK--ELQRQASPSIVIALAGNKADLASQRAVELEEAQA 151
Query: 89 LAQSLHLHSFAVSARTG 105
++ L SA+T
Sbjct: 152 YSEEXGLLFMETSAKTA 168
>gi|432100961|gb|ELK29310.1| Ras-related protein Rab-27A [Myotis davidii]
Length = 246
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QR V E LA+
Sbjct: 121 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRAVKEEEARGLAEK 179
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 180 YGIPYFETSAANGTN 194
>gi|359322436|ref|XP_003639844.1| PREDICTED: ras-related protein Rab-6A [Canis lupus familiaris]
Length = 208
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|154294011|ref|XP_001547449.1| secretion related Rab/GTPase [Botryotinia fuckeliana B05.10]
gi|347841066|emb|CCD55638.1| similar to GTP-binding protein [Botryotinia fuckeliana]
Length = 203
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF +I TW ++ + ++ L+ NK D E +RVV+ ER +LA
Sbjct: 86 ILLVYDVTDERSFTNIRTW--FSNVEQHATEGVNKILIGNKCDWEDKRVVSTERGQQLAD 143
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++ N
Sbjct: 144 ELGIPFLEVSAKSNIN 159
>gi|163915527|gb|AAI57380.1| Rab6a protein [Danio rerio]
Length = 208
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|123451588|ref|XP_001313967.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|121895948|gb|EAY01115.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 189
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVA-LVANKGDMEHQRVVTLERHAKLA 90
VI +YDIT+ SF ++ TW+ F R + P +A +VANK D+E + R + A
Sbjct: 80 VILVYDITNSASFDNLSTWLQSF---RDVTGPRSLAFVVANKTDLEPEDPSIFARGQQFA 136
Query: 91 QSLHLHSFAVSARTGDN 107
+ F SA+TG+N
Sbjct: 137 KDNGFLFFKTSAKTGEN 153
>gi|38679888|ref|NP_942599.1| ras-related protein Rab-6A isoform b [Homo sapiens]
gi|197102660|ref|NP_001125644.1| ras-related protein Rab-6A [Pongo abelii]
gi|397487240|ref|XP_003814713.1| PREDICTED: ras-related protein Rab-6A isoform 1 [Pan paniscus]
gi|131796|sp|P20340.3|RAB6A_HUMAN RecName: Full=Ras-related protein Rab-6A; Short=Rab-6
gi|75055038|sp|Q5RAV6.3|RAB6A_PONAB RecName: Full=Ras-related protein Rab-6A
gi|4585565|gb|AAD25535.1|AF130986_1 RAS-related protein RAB6 [Homo sapiens]
gi|20379054|gb|AAM21087.1|AF498939_1 small GTP binding protein RAB6A [Homo sapiens]
gi|550072|gb|AAA60246.1| GTP-binding protein [Homo sapiens]
gi|54696264|gb|AAV38504.1| RAB6A, member RAS oncogene family [Homo sapiens]
gi|55728729|emb|CAH91104.1| hypothetical protein [Pongo abelii]
gi|61356023|gb|AAX41200.1| RAB6A member RAS oncogene family [synthetic construct]
gi|66911837|gb|AAH96818.1| RAB6A, member RAS oncogene family [Homo sapiens]
gi|119595313|gb|EAW74907.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595314|gb|EAW74908.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595316|gb|EAW74910.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595318|gb|EAW74912.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|158260519|dbj|BAF82437.1| unnamed protein product [Homo sapiens]
gi|158261287|dbj|BAF82821.1| unnamed protein product [Homo sapiens]
gi|190692045|gb|ACE87797.1| RAB6A, member RAS oncogene family protein [synthetic construct]
gi|254071271|gb|ACT64395.1| RAB6A, member RAS oncogene family protein [synthetic construct]
gi|261860502|dbj|BAI46773.1| RAB6A, member RAS oncogene family [synthetic construct]
Length = 208
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|410959114|ref|XP_003986157.1| PREDICTED: ras-related protein Rab-44 [Felis catus]
Length = 984
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYD+TS +SF + W+D L S V L+ NK D E +R V E +LAQ
Sbjct: 872 VVLMYDVTSQESFAHVRHWLDC--LQDSGSDGVVVLLLGNKMDCEEKRQVPTEAGQQLAQ 929
Query: 92 SLHLHSFAVSARTGDN 107
L + SA G N
Sbjct: 930 ELGVSFGECSAALGHN 945
>gi|403336186|gb|EJY67281.1| Small rab-related GTPase [Oxytricha trifallax]
Length = 210
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV-ALVANKGDMEHQRVVTLERHAKLA 90
+I +DIT+ SF ++ TW++ + K + P+ LV NK D+E +RV++ + +K+A
Sbjct: 76 MIIAFDITNQLSFDNVKTWMNSIY---KHADPSIAKVLVGNKIDLEEERVISKQEASKIA 132
Query: 91 QSLHLHSFAVSAR 103
Q + F SAR
Sbjct: 133 QEHGMDYFETSAR 145
>gi|167539982|ref|XP_001741487.1| rab5 [Entamoeba dispar SAW760]
gi|165893902|gb|EDR22017.1| rab5, putative [Entamoeba dispar SAW760]
Length = 195
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS SF W+D R S + LV NK D+ RV+T E A+
Sbjct: 84 ALVVYDITSDSSFTQAKKWIDEL---RGSGNEAIIFLVGNKCDLADSRVITKEEAEGYAR 140
Query: 92 SLHLHSFAVSARTGDNC-----WVNTRTPE-----INPLKYLQSNNE 128
SL + SA+ N + + P I+P + L SNN+
Sbjct: 141 SLSIDYIETSAKANINVNELFDQIARKLPRNEKGLIDPDEVLISNNK 187
>gi|156035711|ref|XP_001585967.1| GTP-binding protein SAS1 [Sclerotinia sclerotiorum 1980]
gi|154698464|gb|EDN98202.1| GTP-binding protein SAS1 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 203
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF +I TW ++ + ++ L+ NK D E +RVV+ ER +LA
Sbjct: 86 ILLVYDVTDERSFTNIRTWFS--NVEQHATEGVNKILIGNKCDWEDKRVVSTERGQQLAD 143
Query: 92 SLHLHSFAVSARTGDN 107
L + VSA++ N
Sbjct: 144 ELGIPFLEVSAKSNIN 159
>gi|426251047|ref|XP_004019243.1| PREDICTED: ras-related protein Rab-44 [Ovis aries]
Length = 981
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYD+TS +SF + W+D L S + L+ NK D E R V+ E +LAQ
Sbjct: 869 VVLMYDVTSQESFVHVRYWLDC--LQDAESDDVVILLLGNKTDCEEDRQVSTEAGQQLAQ 926
Query: 92 SLHLHSFAVSARTGDN 107
L + SA G N
Sbjct: 927 ELGVSFGECSAALGHN 942
>gi|47209067|emb|CAF90248.1| unnamed protein product [Tetraodon nigroviridis]
Length = 176
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT SF +P W L + + ++ LV NK D+ +R V +R AQ
Sbjct: 59 LILTYDITCEDSFRCLPEW--LKEIEQYANNQVVTILVGNKIDLAEKREVVRQRAEDFAQ 116
Query: 92 SLHLHSFAVSARTGDN 107
S + SA+ DN
Sbjct: 117 SQSMLYLETSAKESDN 132
>gi|260827164|ref|XP_002608535.1| hypothetical protein BRAFLDRAFT_92366 [Branchiostoma floridae]
gi|229293886|gb|EEN64545.1| hypothetical protein BRAFLDRAFT_92366 [Branchiostoma floridae]
Length = 398
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
G + +Y +T QSFH + + +K T V ++ANK D++H+R ++ + K
Sbjct: 275 GDGFLLVYSVTDKQSFHDVGRMKEFLDEAKKPRNVTAV-ILANKMDLKHERCISTDEGEK 333
Query: 89 LAQSLHLHSFAVSARTGD 106
LAQ L F SA GD
Sbjct: 334 LAQELSCGYFEGSALLGD 351
>gi|410972687|ref|XP_003992789.1| PREDICTED: ras-related protein Rab-6A isoform 1 [Felis catus]
Length = 208
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|291384296|ref|XP_002708751.1| PREDICTED: RAB6A, member RAS oncogene family-like isoform 2
[Oryctolagus cuniculus]
gi|301759055|ref|XP_002915364.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Ailuropoda
melanoleuca]
gi|332211361|ref|XP_003254788.1| PREDICTED: ras-related protein Rab-6A isoform 1 [Nomascus
leucogenys]
gi|426245107|ref|XP_004016355.1| PREDICTED: ras-related protein Rab-6A [Ovis aries]
gi|296479823|tpg|DAA21938.1| TPA: RAB6A, member RAS oncogene family-like isoform 2 [Bos taurus]
gi|355566853|gb|EHH23232.1| hypothetical protein EGK_06662 [Macaca mulatta]
gi|355752448|gb|EHH56568.1| hypothetical protein EGM_06013 [Macaca fascicularis]
gi|380788413|gb|AFE66082.1| ras-related protein Rab-6A isoform b [Macaca mulatta]
gi|380788417|gb|AFE66084.1| ras-related protein Rab-6A isoform b [Macaca mulatta]
Length = 208
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|54696262|gb|AAV38503.1| RAB6A, member RAS oncogene family [synthetic construct]
Length = 209
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|395814868|ref|XP_003780961.1| PREDICTED: ras-related protein Rab-6A isoform 2 [Otolemur
garnettii]
Length = 208
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|357111244|ref|XP_003557424.1| PREDICTED: ras-related protein RABE1c-like [Brachypodium
distachyon]
Length = 217
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T SF++I W+ ++ + +S LV NK DM+ +RVV+ + KLA
Sbjct: 91 ILLVYDVTDESSFNNIRNWIR--NIEQHASDNVNKILVGNKVDMDAKRVVSTAQGQKLAD 148
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+T N
Sbjct: 149 EYGIKFFETSAKTNQN 164
>gi|281353162|gb|EFB28746.1| hypothetical protein PANDA_003355 [Ailuropoda melanoleuca]
Length = 105
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 27 VAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIEEGERKA 84
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 85 KELNVMFIETSAKAGYNV 102
>gi|38194437|gb|AAR13228.1| Rab family GTPase Rab8 [Fucus distichus]
Length = 205
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF+SI WV + + + L+ NK DM+ R V+ E A LA
Sbjct: 87 ILLVYDVTDKKSFNSIRNWV--AQIQQHADVAVNKILIGNKCDMDEDREVSKEEGANLAA 144
Query: 92 SLHLHSFAVSAR 103
+ F SA+
Sbjct: 145 EYGIQFFETSAK 156
>gi|147899840|ref|NP_001087991.1| RAB3D, member RAS oncogene family [Xenopus laevis]
gi|52139114|gb|AAH82662.1| LOC494677 protein [Xenopus laevis]
Length = 217
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDI++ +SF+++ W + S V LV NK D+E RV+ E KLA+
Sbjct: 99 LLMYDISNMESFNAVQDWAT--QIKTYSWDNAQVLLVGNKCDLEDDRVIPAEDGRKLAEE 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>gi|74834303|emb|CAI44510.1| rab_C21 [Paramecium tetraurelia]
Length = 234
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++D+TS QSF + W + + +ALVANK D++ +R V E A+
Sbjct: 84 ILVFDVTSRQSFEGVAKWYQ--EIQGYACDKIEMALVANKIDLDAKREVQTEEAQAFAKK 141
Query: 93 LHLHSFAVSARTGDN 107
F SA+TG+N
Sbjct: 142 HGFAYFETSAKTGEN 156
>gi|213424141|pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 81 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 138
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 139 KELNVMFIETSAKAGYNV 156
>gi|431892392|gb|ELK02832.1| Ras-related protein Rab-13 [Pteropus alecto]
Length = 184
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKSDMEAKRKVPGEQADKLAR 141
Query: 92 SLHLHSFAVSART 104
+ F SA++
Sbjct: 142 EHGIRFFETSAKS 154
>gi|384244624|gb|EIE18123.1| Rab5a Gtpase domain At 1.05 A resolution, partial [Coccomyxa
subellipsoidea C-169]
Length = 181
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 35 MYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH 94
+YDITSG+SF WV L + +S + LV NK D+ QR VT E + A+
Sbjct: 81 VYDITSGESFQKAKHWVS--ELQKNASGNIAIILVGNKSDLSEQREVTTETGQEYAERNS 138
Query: 95 LHSFAVSARTGDN 107
+ SA+T N
Sbjct: 139 MLFIETSAKTAAN 151
>gi|341885115|gb|EGT41050.1| hypothetical protein CAEBREN_19821 [Caenorhabditis brenneri]
gi|341885137|gb|EGT41072.1| hypothetical protein CAEBREN_20077 [Caenorhabditis brenneri]
Length = 201
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+ +SF +I W L +++ +S ++ NK DM +RVV+ ER K+AQ
Sbjct: 85 IMLVYDITNAKSFDNIAKW--LRNIDEHASEDVVKMILGNKCDMSDRRVVSRERGEKIAQ 142
Query: 92 SLHLHSFAVSAR 103
+ SA+
Sbjct: 143 DHGIRFHETSAK 154
>gi|146084122|ref|XP_001464928.1| putative ras-related protein rab-5 [Leishmania infantum JPCM5]
gi|398013871|ref|XP_003860127.1| ras-related protein rab-5, putative [Leishmania donovani]
gi|134069023|emb|CAM67167.1| putative ras-related protein rab-5 [Leishmania infantum JPCM5]
gi|322498346|emb|CBZ33420.1| ras-related protein rab-5, putative [Leishmania donovani]
Length = 236
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
+CG +V+ YDIT+ +S TW+ N S + LV NK D+E R V+ E
Sbjct: 107 ACGALVV--YDITNSESLKKAQTWIKELRANADPSL--IIVLVGNKKDLESLRQVSFEDG 162
Query: 87 AKLAQSLHLHSF-AVSARTGDN 107
+LA L +F SA+ +N
Sbjct: 163 QRLAAEEQLAAFYEASAKDNNN 184
>gi|440804147|gb|ELR25025.1| Ras-related protein Rab-2-B [Acanthamoeba castellanii str. Neff]
Length = 220
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT SF + W++ H N + + LV NK DME +R ++ E + A+
Sbjct: 87 ALLVYDITCRDSFKYLRGWLEDIHQN--AGAELVIMLVGNKADMEDRREISWEEGEQFAR 144
Query: 92 SLHLHSFA-VSARTGDN 107
+ F+ VSA+TG+
Sbjct: 145 DNGIDCFSEVSAKTGEK 161
>gi|340380157|ref|XP_003388590.1| PREDICTED: ras-related protein Rab-8A-like [Amphimedon
queenslandica]
gi|340386342|ref|XP_003391667.1| PREDICTED: ras-related protein Rab-8A-like [Amphimedon
queenslandica]
Length = 205
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T+ +SF +I W+ ++ ++ ++ NK D+E RVV+ ER LA+
Sbjct: 84 IMLVYDVTNEKSFDNIRNWIR--NIEENAAADVEKMILGNKCDLEESRVVSRERGQLLAE 141
Query: 92 SLHLHSFAVSARTGDN 107
+ SA++G N
Sbjct: 142 EHQVKFMETSAKSGQN 157
>gi|328869838|gb|EGG18213.1| Rab GTPase [Dictyostelium fasciculatum]
Length = 200
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT ++F + W L + SST + LV NK D+E R V+ + A
Sbjct: 102 ALIVYDITRRETFEGLANW--LTDCRKYSSTDVTIVLVGNKCDLEASRQVSYAEASSFAN 159
Query: 92 SLHLHSFAVSARTGDN 107
L F SA+TG N
Sbjct: 160 EHGLLFFETSAKTGSN 175
>gi|66359380|ref|XP_626868.1| Rab5 like small GTpase [Cryptosporidium parvum Iowa II]
gi|46228121|gb|EAK89020.1| Rab5 like small GTpase [Cryptosporidium parvum Iowa II]
Length = 218
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT+ ++F +W+ L ++ VALV NK D+E R V E A+
Sbjct: 90 AIVVYDITNVETFQGAKSWIS--ELQNINNNDIVVALVGNKYDLESSRTVDSETARNYAK 147
Query: 92 SLHLHSFAVSARTGDN 107
+ SF SA+TG N
Sbjct: 148 EKGILSFETSAKTGYN 163
>gi|441621491|ref|XP_003265428.2| PREDICTED: uncharacterized protein LOC100590410 [Nomascus
leucogenys]
Length = 474
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 371 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 428
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 429 KELSVMFIETSAKTGYN 445
>gi|440301486|gb|ELP93872.1| rab11, putative [Entamoeba invadens IP1]
Length = 213
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT SF S+ W++ H N + ++ NK D+ R VT E KLA+
Sbjct: 88 ALVVYDITKKSSFESVERWLNELHEN--ADRKVLQMIIGNKSDLNQTREVTTEEGKKLAE 145
Query: 92 SLHLHSFAVSARTGDN 107
F SA G+N
Sbjct: 146 DNKAFFFETSALDGNN 161
>gi|410922738|ref|XP_003974839.1| PREDICTED: ras-related protein Rab-3C-like [Takifugu rubripes]
Length = 219
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF ++ W + S V L NK DM+ +RVV+++ LA+
Sbjct: 98 ILMYDITNEESFGAVQDWST--QIKTYSWDNAQVVLAGNKCDMDEERVVSVDSGRLLAEQ 155
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 156 LGFEFFETSAK 166
>gi|327285133|ref|XP_003227289.1| PREDICTED: ras-related protein Rab-2A-like [Anolis carolinensis]
Length = 234
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT +F+ + TW++ + SS+ + LV NK D+E QRVV E A+
Sbjct: 83 LLVYDITKRDTFNHLHTWLE--DARKNSSSHIVIVLVGNKSDLEDQRVVQREEGEAFARE 140
Query: 93 LHLHSFAVSARTGDN 107
+ SART N
Sbjct: 141 HGMVFLETSARTATN 155
>gi|90085076|dbj|BAE91279.1| unnamed protein product [Macaca fascicularis]
Length = 187
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|387016274|gb|AFJ50256.1| GTP-binding protein [Crotalus adamanteus]
Length = 208
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYN 162
>gi|145549942|ref|XP_001460650.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124428480|emb|CAK93253.1| unnamed protein product [Paramecium tetraurelia]
Length = 287
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I Y I + SF S+ W+++ L + SS +VA D+E +R V E+ KLA
Sbjct: 86 AIIFYKIDNQDSFKSLDNWINI--LKQVSSDKIQTVIVATHKDLEEKRQVETEQGRKLAD 143
Query: 92 SLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQS 125
S+ F +S + D V T N L+ + S
Sbjct: 144 SIGAKFFEISNQDKDQIDVIVNTLSFNVLRLISS 177
>gi|169784109|ref|XP_001826516.1| GTP-binding protein ypt2 [Aspergillus oryzae RIB40]
gi|83775261|dbj|BAE65383.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391868528|gb|EIT77742.1| GTP-binding protein [Aspergillus oryzae 3.042]
Length = 206
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF +I TW ++ + +S + L+ NK D E +R V+ E+ +LA
Sbjct: 86 ILLVYDVTDERSFQNIRTWFS--NVEQHASEGVHKILIGNKCDWEEKRAVSTEQGQQLAD 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|355714968|gb|AES05180.1| RAB6A, member RAS oncoprotein family [Mustela putorius furo]
Length = 164
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 88 VAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 146 KELNVMFIETSAKAGYNV 163
>gi|417408833|gb|JAA50952.1| Putative rab subfamily protein of small gtpase, partial [Desmodus
rotundus]
Length = 228
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 109 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 166
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 167 EHGIRFFETSAKSSMN 182
>gi|340502213|gb|EGR28924.1| hypothetical protein IMG5_166730 [Ichthyophthirius multifiliis]
Length = 218
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 4 VKMLNLHNDNYEIQLKVVLLGDPSCGKI----------VIFMYDITSGQSFHSIPTWVDL 53
+ML++ N N ++Q+ G S I + +YDIT +SF + W+D
Sbjct: 45 ARMLSIDNKNIKLQIWDTA-GQESFRSITRSYYRSAAGALLVYDITRRESFQHLSRWLD- 102
Query: 54 FHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107
+ + L+ NK D+E+QR VT E + A+ L+ VSA+T N
Sbjct: 103 -EAKQNGNPQLSFILIGNKCDLENQRQVTYEEGQEFARQNDLYFLEVSAKTAYN 155
>gi|242047780|ref|XP_002461636.1| hypothetical protein SORBIDRAFT_02g005790 [Sorghum bicolor]
gi|241925013|gb|EER98157.1| hypothetical protein SORBIDRAFT_02g005790 [Sorghum bicolor]
Length = 216
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T SF++I W+ ++ + +S LV NK DM+ +RVV+ + KLA
Sbjct: 91 ILLVYDVTDESSFNNIRNWI--RNIEQHASDNVNKILVGNKVDMDAKRVVSTAQGQKLAD 148
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+T N
Sbjct: 149 EYGIKFFETSAKTNQN 164
>gi|402594067|gb|EJW87994.1| rab family protein 10 [Wuchereria bancrofti]
Length = 203
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+ +SF +I W L +++ +S L+ NK DM +RVV+ ER K+A
Sbjct: 85 IMLVYDITNAKSFDNIAKW--LRNIDEHASEDVEKMLLGNKCDMAERRVVSRERGEKIAN 142
Query: 92 SLHLHSFAVSART 104
+ SA+
Sbjct: 143 DHGIRFLETSAKA 155
>gi|392572292|gb|EIW65444.1| hypothetical protein TREMEDRAFT_70574 [Tremella mesenterica DSM
1558]
Length = 216
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF + WVD R + LV NK D+ +R VT E K A
Sbjct: 97 VAVIVYDITNRTSFLNTSKWVDDVRNERGQDV--IIVLVGNKTDLNDKRQVTPEELDKRA 154
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + S SA+ G N
Sbjct: 155 KELGVMSIETSAKAGHN 171
>gi|348515487|ref|XP_003445271.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Oreochromis
niloticus]
gi|410913473|ref|XP_003970213.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Takifugu
rubripes]
Length = 211
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 91 IAVVVYDITNLNSFQQTSKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSVEAAERKA 148
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 149 RELNVMYIETSAKAGYN 165
>gi|145538704|ref|XP_001455052.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422840|emb|CAK87655.1| unnamed protein product [Paramecium tetraurelia]
Length = 231
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++D+TS QSF + W + + +ALVANK D++ +R V E A+
Sbjct: 84 ILVFDVTSRQSFEGVAKWYQ--EIQGYACDKIEMALVANKIDLDAKREVQTEEAQAFAKK 141
Query: 93 LHLHSFAVSARTGDN 107
F SA+TG+N
Sbjct: 142 HGFAYFETSAKTGEN 156
>gi|355704896|gb|EHH30821.1| Ras-related protein Rab-41, partial [Macaca mulatta]
gi|355757440|gb|EHH60965.1| Ras-related protein Rab-41, partial [Macaca fascicularis]
Length = 222
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF WV+ H+ + + LV NK D++++R VT E + +
Sbjct: 106 IAVVVYDITNISSFKETDKWVE--HVRAERGDDVVIMLVGNKIDLDNKRQVTAEEGEEKS 163
Query: 91 QSLHLHSFAVSARTGDN 107
++L++ SA+TG N
Sbjct: 164 RNLNVMFIETSAKTGYN 180
>gi|198428453|ref|XP_002127854.1| PREDICTED: similar to small GTP binding protein Rab27B [Ciona
intestinalis]
Length = 237
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
G + ++D+ S SF S+ W+D S P V LV NK D++ + V T E K
Sbjct: 108 GMGFLLLFDLASENSFRSVRQWLDEIKEQAYSDEPDIV-LVGNKNDLDSREVTTAE-AKK 165
Query: 89 LAQSLHLHSFAVSARTGDN 107
LA L + SA TG+N
Sbjct: 166 LADELKIAYVETSAATGEN 184
>gi|158254057|gb|AAI54222.1| Zgc:63637 [Danio rerio]
Length = 211
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF W+D R S + LV NK D+ +R V++E K A
Sbjct: 91 IAVVVYDITNLNSFQQTSKWIDDVRTERGSD--VIIMLVGNKTDLGDKRQVSVEAAEKKA 148
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+ G N
Sbjct: 149 RELGVMYIETSAKAGYN 165
>gi|121714245|ref|XP_001274733.1| Rab GTPase SrgA, putative [Aspergillus clavatus NRRL 1]
gi|119402887|gb|EAW13307.1| Rab GTPase SrgA, putative [Aspergillus clavatus NRRL 1]
Length = 206
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF +I TW ++ + +S + L+ NK D E +R V+ E+ +LA
Sbjct: 86 ILLVYDVTDERSFQNIRTWFS--NVEQHASEGVHKILIGNKCDWEEKRAVSTEQGQQLAD 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|115471033|ref|NP_001059115.1| Os07g0195100 [Oryza sativa Japonica Group]
gi|113610651|dbj|BAF21029.1| Os07g0195100, partial [Oryza sativa Japonica Group]
Length = 273
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T SF++I W+ ++ + +S LV NK DM+ +RVV+ + KLA
Sbjct: 149 ILLVYDVTDESSFNNIRNWIR--NIEQHASDNVNKILVGNKVDMDTKRVVSTAQGQKLAD 206
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+T N
Sbjct: 207 EYGMKFFETSAKTNQN 222
>gi|395822218|ref|XP_003784419.1| PREDICTED: ras-related protein Rab-27A-like [Otolemur garnettii]
Length = 221
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ + P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQTHAYCENPDIV-LCGNKSDLEDQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|359078545|ref|XP_003587719.1| PREDICTED: ras-related protein Rab-44-like [Bos taurus]
Length = 547
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYD+TS +SF + W+D L S + L+ NK D E R V+ E +LAQ
Sbjct: 435 VVLMYDVTSQESFVHVRYWLDC--LRDAESDDVVILLLGNKTDREEDRQVSTEAGQQLAQ 492
Query: 92 SLHLHSFAVSARTGDN 107
L + SA G N
Sbjct: 493 ELGVSFGECSAALGHN 508
>gi|348527766|ref|XP_003451390.1| PREDICTED: ras-related protein Rab-3B-like [Oreochromis niloticus]
Length = 218
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V +V NK DM+ +RVV E+ LA
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVIMVGNKCDMDEERVVPPEKGKHLADQ 156
Query: 93 LHLHSFAVSAR 103
L + SA+
Sbjct: 157 LGFEYYEASAK 167
>gi|195433707|ref|XP_002064849.1| GK14984 [Drosophila willistoni]
gi|194160934|gb|EDW75835.1| GK14984 [Drosophila willistoni]
Length = 220
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDI + SF TWV H +++S +AL NK D+ + RVV + +
Sbjct: 102 AQAAIVVYDIQNQDSFQRAKTWVKELH--KQASPNIVIALAGNKADLSNIRVVEFDEAKQ 159
Query: 89 LAQSLHLHSFAVSARTGDN 107
A+ L SA+TG N
Sbjct: 160 YAEENGLLFMETSAKTGMN 178
>gi|148233542|ref|NP_001085155.1| uncharacterized protein LOC432237 [Xenopus laevis]
gi|47938712|gb|AAH72158.1| MGC80171 protein [Xenopus laevis]
Length = 218
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQ 91
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V ER AK LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDMV-LIGNKADLSDQREVN-ERQAKELAD 153
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA +G +
Sbjct: 154 KYGIPYFETSAASGQD 169
>gi|218199254|gb|EEC81681.1| hypothetical protein OsI_25244 [Oryza sativa Indica Group]
gi|222636607|gb|EEE66739.1| hypothetical protein OsJ_23431 [Oryza sativa Japonica Group]
Length = 192
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T SF++I W+ ++ + +S LV NK DM+ +RVV+ + KLA
Sbjct: 68 ILLVYDVTDESSFNNIRNWIR--NIEQHASDNVNKILVGNKVDMDTKRVVSTAQGQKLAD 125
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+T N
Sbjct: 126 EYGMKFFETSAKTNQN 141
>gi|38175435|dbj|BAC83185.2| putative ras-related protein [Oryza sativa Japonica Group]
gi|215737480|dbj|BAG96610.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737584|dbj|BAG96714.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767074|dbj|BAG99302.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 215
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T SF++I W+ ++ + +S LV NK DM+ +RVV+ + KLA
Sbjct: 91 ILLVYDVTDESSFNNIRNWIR--NIEQHASDNVNKILVGNKVDMDTKRVVSTAQGQKLAD 148
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+T N
Sbjct: 149 EYGMKFFETSAKTNQN 164
>gi|6010031|emb|CAB57219.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDITS SF WV L ++ + +AL NK D+E +R VT+E A+
Sbjct: 86 AIIVYDITSADSFTRAKKWVQ--ELQKQGNPNMVMALAGNKADLEDKRKVTVEEARVYAE 143
Query: 92 SLHLHSFAVSARTGDNC-----WVNTRTPEINPLK 121
L SA+T N + R P P +
Sbjct: 144 ENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQ 178
>gi|402900984|ref|XP_003913439.1| PREDICTED: ras-related protein Rab-37 isoform 2 [Papio anubis]
Length = 196
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ ++ +YDITS SF SI W L ++ + + L+ NK DM +RV+ E
Sbjct: 76 AQALLLLYDITSKSSFDSIRAW--LTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGET 133
Query: 89 LAQSLHLHSFAVSARTGDN 107
LA+ + SA+TG N
Sbjct: 134 LAREYGVPFLETSAKTGMN 152
>gi|326491937|dbj|BAJ98193.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326496867|dbj|BAJ98460.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 247
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM-EHQRVVTLERHAKLA 90
+ +YD+T +F +P WV+ L + T VALV NK D H+R V + A+ A
Sbjct: 101 AMVVYDVTRRATFDHVPRWVE--ELRAHADGSTVVALVGNKADAPAHRREVPADEAARFA 158
Query: 91 QSLHLHSFAVSARTGDN 107
+ L SA TGDN
Sbjct: 159 EEQGLFFSEASALTGDN 175
>gi|308475031|ref|XP_003099735.1| CRE-RAB-10 protein [Caenorhabditis remanei]
gi|308266390|gb|EFP10343.1| CRE-RAB-10 protein [Caenorhabditis remanei]
Length = 201
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+ +SF +I W L +++ +S ++ NK DM +RVV+ ER K+AQ
Sbjct: 85 IMLVYDITNAKSFDNIAKW--LRNIDEHASEDVVKMILGNKCDMSDRRVVSRERGEKIAQ 142
Query: 92 SLHLHSFAVSAR 103
+ SA+
Sbjct: 143 DHGIRFHETSAK 154
>gi|432877571|ref|XP_004073165.1| PREDICTED: ras-related protein Rab-6B-like isoform 2 [Oryzias
latipes]
Length = 211
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 91 IAVVVYDITNLNSFQQTSKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSVEAAERKA 148
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 149 RELNVMYIETSAKAGYN 165
>gi|344252929|gb|EGW09033.1| Ras-related protein Rab-6A [Cricetulus griseus]
Length = 108
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 27 VAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIEEGERKA 84
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 85 KELNVMFIETSAKAGYNV 102
>gi|67610128|ref|XP_667084.1| Rab5 [Cryptosporidium hominis TU502]
gi|54658188|gb|EAL36862.1| Rab5 [Cryptosporidium hominis]
Length = 218
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT+ ++F +W+ L ++ VALV NK D+E R V E A+
Sbjct: 90 AIVVYDITNVETFQGAKSWIS--ELQNINNNDIVVALVGNKYDLESSRTVDSETARNYAK 147
Query: 92 SLHLHSFAVSARTGDN 107
+ SF SA+TG N
Sbjct: 148 EKGILSFETSAKTGYN 163
>gi|390476751|ref|XP_003735179.1| PREDICTED: ras-related protein Rab-13-like [Callithrix jacchus]
Length = 203
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQANKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>gi|255935933|ref|XP_002558993.1| Pc13g05590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583613|emb|CAP91628.1| Pc13g05590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|425777724|gb|EKV15880.1| Rab GTPase SrgA, putative [Penicillium digitatum PHI26]
gi|425782706|gb|EKV20602.1| Rab GTPase SrgA, putative [Penicillium digitatum Pd1]
Length = 206
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF +I TW ++ + +S + L+ NK D E +R V+ E+ +LA
Sbjct: 86 ILLVYDVTDERSFQNIRTWFS--NVEQHASEGVHKILIGNKCDWEEKRAVSTEQGQQLAD 143
Query: 92 SLHLHSFAVSAR 103
L + VSA+
Sbjct: 144 ELGIPFLEVSAK 155
>gi|156372453|ref|XP_001629052.1| predicted protein [Nematostella vectensis]
gi|156216043|gb|EDO36989.1| predicted protein [Nematostella vectensis]
Length = 187
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+VI YD+++ QSF++ W++ KS AL+A K D++ +RV++ ++ A
Sbjct: 84 LVIVAYDVSNEQSFNACNKWLERCRSLAKSDNNLPGALIATKTDLKQRRVISTKQGKDYA 143
Query: 91 QSLHLHSFAVSARTGDN 107
S +L F SA+ +N
Sbjct: 144 NSKNLEYFECSAKEHEN 160
>gi|388453587|ref|NP_001253537.1| ras-related protein Rab-37 [Macaca mulatta]
gi|383417977|gb|AFH32202.1| ras-related protein Rab-37 isoform 2 [Macaca mulatta]
Length = 223
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
+ ++ +YDITS SF SI W L ++ + + L+ NK DM +RV+ E L
Sbjct: 104 QALLLLYDITSKSSFDSIRAW--LTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETL 161
Query: 90 AQSLHLHSFAVSARTGDN 107
A+ + SA+TG N
Sbjct: 162 AREYGVPFLETSAKTGMN 179
>gi|148229252|ref|NP_001084598.1| RAB27B, member RAS oncogene family [Xenopus laevis]
gi|50414608|gb|AAH77245.1| MGC80016 protein [Xenopus laevis]
Length = 218
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQ 91
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V ER AK LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLSDQREVN-ERQAKELAD 153
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA +G +
Sbjct: 154 KYGIPYFETSAASGKD 169
>gi|440294253|gb|ELP87270.1| rab11, putative [Entamoeba invadens IP1]
Length = 207
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLER 85
S G IV+ YD+T+ +SF + +W++ + L ++ P + L+ NK D+ +R + +
Sbjct: 79 SIGAIVV--YDLTNRESFSHVQSWIEKYQELGGMTNIPRSILLIGNKSDVLQEREIESQE 136
Query: 86 HAKLAQS---LHLHSFAVSARTGDN 107
LA+S L+ + F SA++G N
Sbjct: 137 GEDLAKSMKTLNTYFFETSAKSGKN 161
>gi|332235604|ref|XP_003266996.1| PREDICTED: ras-related protein Rab-27A isoform 1 [Nomascus
leucogenys]
gi|332235606|ref|XP_003266997.1| PREDICTED: ras-related protein Rab-27A isoform 2 [Nomascus
leucogenys]
gi|332235608|ref|XP_003266998.1| PREDICTED: ras-related protein Rab-27A isoform 3 [Nomascus
leucogenys]
gi|441615192|ref|XP_004088277.1| PREDICTED: ras-related protein Rab-27A [Nomascus leucogenys]
Length = 221
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QR V E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRAVKEEEAIALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>gi|320169952|gb|EFW46851.1| Rab8a protein [Capsaspora owczarzaki ATCC 30864]
Length = 214
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T ++F +I W+ ++ + +S ++ NK D++ +RVVT ER +LA+
Sbjct: 84 IMLVYDVTQDKTFENIKNWIR--NIEQHASEDVEKMILGNKCDVDDKRVVTKERGEQLAR 141
Query: 92 SLHLHSFAVSART 104
++ F SA+
Sbjct: 142 EYNVRFFETSAKA 154
>gi|402900986|ref|XP_003913440.1| PREDICTED: ras-related protein Rab-37 isoform 3 [Papio anubis]
Length = 186
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ ++ +YDITS SF SI W L ++ + + L+ NK DM +RV+ E
Sbjct: 66 AQALLLLYDITSKSSFDSIRAW--LTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGET 123
Query: 89 LAQSLHLHSFAVSARTGDN 107
LA+ + SA+TG N
Sbjct: 124 LAREYGVPFLETSAKTGMN 142
>gi|388520843|gb|AFK48483.1| unknown [Lotus japonicus]
Length = 210
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDI+S +F WV L R + +AL ANK D+E +R V E K AQ
Sbjct: 86 AIVVYDISSIDTFVQAEKWVQ--ELQRHGNQKLVMALAANKSDLEPKREVETEEGEKFAQ 143
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+T +N
Sbjct: 144 ENGMFYMETSAKTAEN 159
>gi|325193645|emb|CCA27913.1| Rab28 family GTPase putative [Albugo laibachii Nc14]
Length = 159
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 29 GKIVIFM-YDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G V F+ YD+T SF + W F + K V L+ NK D+ +RV+T E+H
Sbjct: 8 GSDVAFVCYDVTDALSFDDVSDW---FVMIGK---DVAVYLIGNKSDLIAERVITEEKHC 61
Query: 88 KLAQSLHLH-SFAVSARTGD 106
+ + L + F +SAR GD
Sbjct: 62 EFVEKLGICGGFCISARNGD 81
>gi|432868521|ref|XP_004071579.1| PREDICTED: ras-related protein Rab-37-like [Oryzias latipes]
Length = 229
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ ++ +YDIT+ SF +I W L ++ + + L+ NK DM +RVV E K
Sbjct: 109 AQALLLIYDITNKPSFDNIRAW--LTEIHEYAQKDVVIMLLGNKSDMAAERVVKTEEGEK 166
Query: 89 LAQSLHLHSFAVSARTGDN 107
LA+ + SA+TG N
Sbjct: 167 LAKECGIPFMETSAKTGVN 185
>gi|388491226|gb|AFK33679.1| unknown [Lotus japonicus]
Length = 200
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDITS SF WV L ++ + VAL NK D+E +R VT E A+
Sbjct: 86 AIIVYDITSSDSFTRAKKWVQ--ELQKQGNPNMVVALAGNKSDLEDKRKVTPEEARVYAE 143
Query: 92 SLHLHSFAVSARTGDNC-----WVNTRTPEINPLK 121
L SA+T N + R P P +
Sbjct: 144 DNGLFFMGTSAKTAANVNDVFYEIAKRLPRAQPAQ 178
>gi|47087033|ref|NP_998530.1| ras-related protein Rab-6A [Danio rerio]
gi|34784020|gb|AAH58059.1| Zgc:63637 [Danio rerio]
Length = 211
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + +YDIT+ SF W+D R S + LV NK D+ +R V++E K A
Sbjct: 91 IAVVVYDITNLNSFQQTSKWIDDVRTERGSD--VIIMLVGNKTDLGDKRQVSVEAAEKKA 148
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+ G N
Sbjct: 149 RELGVMYIETSAKAGYN 165
>gi|402900982|ref|XP_003913438.1| PREDICTED: ras-related protein Rab-37 isoform 1 [Papio anubis]
Length = 223
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
+ ++ +YDITS SF SI W L ++ + + L+ NK DM +RV+ E L
Sbjct: 104 QALLLLYDITSKSSFDSIRAW--LTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETL 161
Query: 90 AQSLHLHSFAVSARTGDN 107
A+ + SA+TG N
Sbjct: 162 AREYGVPFLETSAKTGMN 179
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,425,121,795
Number of Sequences: 23463169
Number of extensions: 89070404
Number of successful extensions: 192165
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 5616
Number of HSP's that attempted gapping in prelim test: 186977
Number of HSP's gapped (non-prelim): 7297
length of query: 158
length of database: 8,064,228,071
effective HSP length: 120
effective length of query: 38
effective length of database: 9,543,615,087
effective search space: 362657373306
effective search space used: 362657373306
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)